Query 026948
Match_columns 230
No_of_seqs 210 out of 2134
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.5 6.2E-14 1.3E-18 118.1 12.0 129 71-227 324-452 (966)
2 COG3063 PilF Tfp pilus assembl 99.5 2.4E-13 5.2E-18 101.9 12.4 128 75-228 43-170 (250)
3 PRK15359 type III secretion sy 99.5 1.9E-13 4.2E-18 98.6 11.0 98 120-229 27-124 (144)
4 PRK10370 formate-dependent nit 99.5 5.7E-13 1.2E-17 101.1 14.1 120 82-229 54-176 (198)
5 KOG4626 O-linked N-acetylgluco 99.5 2.3E-13 5.1E-18 114.7 11.6 133 68-228 355-487 (966)
6 PRK15363 pathogenicity island 99.4 2.7E-12 5.9E-17 91.9 12.3 102 114-227 32-133 (157)
7 KOG0553 TPR repeat-containing 99.4 9.5E-13 2.1E-17 102.4 10.2 104 113-228 77-180 (304)
8 PF13424 TPR_12: Tetratricopep 99.4 1.7E-12 3.8E-17 83.6 9.9 75 154-228 2-77 (78)
9 PRK11189 lipoprotein NlpI; Pro 99.4 6.2E-12 1.3E-16 101.5 14.3 103 115-229 62-164 (296)
10 TIGR02552 LcrH_SycD type III s 99.4 5.1E-12 1.1E-16 90.0 11.8 102 116-229 16-117 (135)
11 TIGR02521 type_IV_pilW type IV 99.4 4.5E-11 9.7E-16 91.9 14.8 119 82-226 80-198 (234)
12 KOG1840 Kinesin light chain [C 99.3 1.5E-10 3.2E-15 98.5 17.5 140 81-228 255-398 (508)
13 TIGR00990 3a0801s09 mitochondr 99.3 4.4E-11 9.6E-16 105.9 14.9 98 118-227 400-497 (615)
14 KOG1130 Predicted G-alpha GTPa 99.3 5.3E-12 1.1E-16 102.1 7.8 107 120-226 238-344 (639)
15 KOG1155 Anaphase-promoting com 99.3 4.2E-11 9.1E-16 98.1 12.9 118 82-227 345-462 (559)
16 CHL00033 ycf3 photosystem I as 99.3 1.3E-10 2.8E-15 86.1 14.3 108 112-228 30-144 (168)
17 PF14938 SNAP: Soluble NSF att 99.3 1.9E-10 4.2E-15 92.2 16.4 146 70-226 38-184 (282)
18 TIGR00990 3a0801s09 mitochondr 99.3 5.3E-11 1.1E-15 105.5 14.1 133 69-229 333-465 (615)
19 PF13424 TPR_12: Tetratricopep 99.3 8E-11 1.7E-15 75.7 11.2 73 116-188 4-77 (78)
20 KOG1130 Predicted G-alpha GTPa 99.3 4.1E-11 8.9E-16 97.1 11.5 136 83-228 171-306 (639)
21 KOG0553 TPR repeat-containing 99.3 1.1E-10 2.4E-15 91.0 12.5 124 63-214 77-200 (304)
22 PLN03088 SGT1, suppressor of 99.3 8.2E-11 1.8E-15 97.2 12.3 98 120-229 5-102 (356)
23 KOG1173 Anaphase-promoting com 99.3 6E-11 1.3E-15 99.2 11.0 119 88-228 401-520 (611)
24 PF12895 Apc3: Anaphase-promot 99.3 1.1E-10 2.4E-15 76.2 10.2 84 129-223 1-84 (84)
25 PF13414 TPR_11: TPR repeat; P 99.2 6.5E-11 1.4E-15 74.2 8.3 65 157-227 3-68 (69)
26 PRK10803 tol-pal system protei 99.2 8.4E-09 1.8E-13 81.5 22.1 106 118-229 143-249 (263)
27 PRK02603 photosystem I assembl 99.2 5.4E-10 1.2E-14 83.1 14.3 106 112-226 30-142 (172)
28 KOG1155 Anaphase-promoting com 99.2 1.5E-10 3.2E-15 95.0 11.9 118 82-227 379-496 (559)
29 KOG1840 Kinesin light chain [C 99.2 1.3E-09 2.7E-14 92.8 17.7 147 73-228 205-356 (508)
30 TIGR02795 tol_pal_ybgF tol-pal 99.2 3.9E-10 8.4E-15 78.1 12.2 105 119-229 4-108 (119)
31 PF14938 SNAP: Soluble NSF att 99.2 6.2E-10 1.3E-14 89.3 13.4 112 117-229 35-147 (282)
32 cd00189 TPR Tetratricopeptide 99.2 2.6E-10 5.5E-15 74.7 9.3 98 119-228 2-99 (100)
33 COG3063 PilF Tfp pilus assembl 99.2 4.6E-10 9.9E-15 84.5 11.4 101 114-226 32-132 (250)
34 TIGR02521 type_IV_pilW type IV 99.2 1.5E-09 3.3E-14 83.3 14.5 122 81-228 45-166 (234)
35 KOG1126 DNA-binding cell divis 99.2 5.4E-11 1.2E-15 101.0 6.7 98 117-226 455-552 (638)
36 PRK09782 bacteriophage N4 rece 99.2 6.4E-10 1.4E-14 102.1 13.3 99 118-228 610-708 (987)
37 PF09976 TPR_21: Tetratricopep 99.1 1E-08 2.2E-13 74.1 16.8 99 116-224 47-145 (145)
38 PRK12370 invasion protein regu 99.1 9.9E-10 2.2E-14 96.1 13.2 116 83-226 320-435 (553)
39 PRK15359 type III secretion sy 99.1 7.1E-10 1.5E-14 80.0 10.1 109 74-210 31-139 (144)
40 PRK12370 invasion protein regu 99.1 7.7E-10 1.7E-14 96.8 12.1 119 83-229 277-404 (553)
41 PRK11189 lipoprotein NlpI; Pro 99.1 3.4E-09 7.3E-14 85.6 14.3 128 70-226 67-194 (296)
42 KOG1125 TPR repeat-containing 99.1 1.7E-10 3.6E-15 96.8 6.5 102 116-229 429-530 (579)
43 TIGR03302 OM_YfiO outer membra 99.1 7.2E-09 1.6E-13 80.8 15.4 141 69-228 35-197 (235)
44 PRK15174 Vi polysaccharide exp 99.1 2.4E-09 5.3E-14 95.3 13.1 94 119-224 248-345 (656)
45 PRK11447 cellulose synthase su 99.1 3.2E-09 6.9E-14 100.3 14.4 125 82-228 284-416 (1157)
46 PRK15179 Vi polysaccharide bio 99.1 3.3E-09 7.2E-14 94.1 13.6 119 82-228 101-219 (694)
47 PF13414 TPR_11: TPR repeat; P 99.1 6.9E-10 1.5E-14 69.5 6.9 65 117-187 3-68 (69)
48 KOG0543 FKBP-type peptidyl-pro 99.1 2.7E-09 5.9E-14 86.6 11.3 108 116-229 207-323 (397)
49 PRK15174 Vi polysaccharide exp 99.0 5.7E-09 1.2E-13 93.0 13.7 101 116-228 283-383 (656)
50 KOG1941 Acetylcholine receptor 99.0 6E-09 1.3E-13 83.4 11.9 136 82-227 137-276 (518)
51 KOG1126 DNA-binding cell divis 99.0 1.5E-09 3.2E-14 92.5 8.8 100 116-227 488-587 (638)
52 PRK11788 tetratricopeptide rep 99.0 2.7E-08 5.8E-13 83.2 16.3 106 116-228 106-211 (389)
53 PF13432 TPR_16: Tetratricopep 99.0 1.6E-09 3.6E-14 66.9 6.7 62 162-229 2-63 (65)
54 PRK11788 tetratricopeptide rep 99.0 6.2E-08 1.4E-12 81.0 17.4 94 121-225 184-277 (389)
55 TIGR02917 PEP_TPR_lipo putativ 99.0 2E-08 4.3E-13 91.7 15.0 62 159-226 161-222 (899)
56 PLN03088 SGT1, suppressor of 99.0 1E-08 2.2E-13 84.9 11.8 114 70-211 5-118 (356)
57 COG1729 Uncharacterized protei 98.9 2.1E-08 4.5E-13 77.8 12.0 103 120-228 144-246 (262)
58 KOG0550 Molecular chaperone (D 98.9 5.4E-09 1.2E-13 84.8 9.0 135 81-227 217-351 (486)
59 PRK11447 cellulose synthase su 98.9 2E-08 4.3E-13 95.0 14.0 125 82-228 366-526 (1157)
60 PRK15331 chaperone protein Sic 98.9 1.6E-08 3.6E-13 72.9 10.3 104 111-226 31-134 (165)
61 PRK09782 bacteriophage N4 rece 98.9 2.8E-08 6.1E-13 91.5 14.4 95 122-229 581-675 (987)
62 TIGR03302 OM_YfiO outer membra 98.9 3.6E-08 7.9E-13 76.8 13.2 108 116-229 32-147 (235)
63 TIGR02917 PEP_TPR_lipo putativ 98.9 2.6E-08 5.7E-13 90.9 13.6 98 117-227 770-867 (899)
64 PF12688 TPR_5: Tetratrico pep 98.9 1.6E-07 3.4E-12 65.1 14.0 101 119-225 3-103 (120)
65 KOG0547 Translocase of outer m 98.9 1.1E-08 2.3E-13 84.8 9.3 119 82-228 375-493 (606)
66 PRK15179 Vi polysaccharide bio 98.9 5.6E-08 1.2E-12 86.4 14.6 98 116-225 85-182 (694)
67 COG5010 TadD Flp pilus assembl 98.9 1.3E-07 2.8E-12 72.7 14.5 95 119-225 102-196 (257)
68 KOG0548 Molecular co-chaperone 98.9 4.9E-08 1.1E-12 81.6 13.0 100 117-228 358-457 (539)
69 KOG1173 Anaphase-promoting com 98.8 2.1E-08 4.6E-13 84.2 9.7 126 82-229 361-487 (611)
70 PF13432 TPR_16: Tetratricopep 98.8 1.8E-08 4E-13 62.2 7.0 61 121-187 1-61 (65)
71 KOG2003 TPR repeat-containing 98.8 1.5E-08 3.3E-13 83.4 8.1 108 111-230 484-591 (840)
72 COG5010 TadD Flp pilus assembl 98.8 9.3E-08 2E-12 73.5 11.8 121 73-221 106-226 (257)
73 KOG4234 TPR repeat-containing 98.8 9.7E-08 2.1E-12 70.7 11.4 106 116-228 94-199 (271)
74 COG4235 Cytochrome c biogenesi 98.8 7.8E-08 1.7E-12 75.6 11.5 102 116-229 155-259 (287)
75 PF13429 TPR_15: Tetratricopep 98.8 2.7E-08 5.8E-13 79.7 8.9 101 116-228 145-245 (280)
76 PF13429 TPR_15: Tetratricopep 98.8 2.8E-08 6.2E-13 79.6 8.8 121 79-227 158-278 (280)
77 KOG4555 TPR repeat-containing 98.8 3.8E-07 8.2E-12 63.1 12.5 101 118-226 44-144 (175)
78 PLN02789 farnesyltranstransfer 98.8 3.1E-07 6.8E-12 74.7 14.2 118 82-227 52-172 (320)
79 PRK15363 pathogenicity island 98.8 2.6E-07 5.7E-12 66.4 12.0 102 64-187 32-133 (157)
80 KOG0543 FKBP-type peptidyl-pro 98.8 1.8E-07 3.9E-12 76.1 12.3 149 65-226 206-355 (397)
81 PRK10049 pgaA outer membrane p 98.8 2.4E-07 5.2E-12 84.2 14.3 96 119-227 51-146 (765)
82 KOG0547 Translocase of outer m 98.7 4.9E-08 1.1E-12 80.9 8.5 95 115-221 113-207 (606)
83 KOG2002 TPR-containing nuclear 98.7 6.7E-08 1.4E-12 85.8 9.8 122 82-229 627-748 (1018)
84 cd05804 StaR_like StaR_like; a 98.7 1.6E-07 3.5E-12 77.6 10.9 102 116-225 113-214 (355)
85 KOG0624 dsRNA-activated protei 98.7 1.6E-06 3.4E-11 69.4 15.2 161 62-228 33-220 (504)
86 PRK10049 pgaA outer membrane p 98.7 8.2E-07 1.8E-11 80.8 15.7 103 115-229 357-459 (765)
87 PF13512 TPR_18: Tetratricopep 98.7 1.2E-06 2.5E-11 62.1 13.0 106 118-229 11-131 (142)
88 PF13525 YfiO: Outer membrane 98.7 8.8E-07 1.9E-11 67.6 13.1 108 116-229 4-122 (203)
89 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 7.7E-08 1.7E-12 79.9 7.7 70 111-186 69-141 (453)
90 KOG1129 TPR repeat-containing 98.6 1E-07 2.3E-12 75.6 7.3 124 82-224 271-422 (478)
91 KOG1125 TPR repeat-containing 98.6 2.2E-07 4.7E-12 78.4 9.3 118 81-220 444-565 (579)
92 PRK02603 photosystem I assembl 98.6 1.7E-06 3.6E-11 64.3 12.6 75 151-228 29-103 (172)
93 PF13371 TPR_9: Tetratricopept 98.6 2.3E-07 5E-12 58.5 6.7 59 164-228 2-60 (73)
94 PRK10866 outer membrane biogen 98.6 3.3E-06 7.2E-11 66.2 14.5 105 119-229 34-156 (243)
95 KOG1586 Protein required for f 98.6 1.9E-06 4.2E-11 65.4 12.4 110 119-229 36-146 (288)
96 KOG4648 Uncharacterized conser 98.6 2.2E-07 4.8E-12 74.2 7.8 96 120-227 100-195 (536)
97 TIGR02552 LcrH_SycD type III s 98.6 4.9E-07 1.1E-11 64.1 9.0 78 139-228 5-82 (135)
98 PF12895 Apc3: Anaphase-promot 98.6 5.3E-07 1.2E-11 58.6 8.4 80 83-183 5-84 (84)
99 COG2956 Predicted N-acetylgluc 98.6 5.3E-06 1.1E-10 65.9 15.2 101 116-227 179-279 (389)
100 PRK14574 hmsH outer membrane p 98.6 9.3E-07 2E-11 80.2 12.7 100 117-229 102-201 (822)
101 TIGR00540 hemY_coli hemY prote 98.6 5.7E-06 1.2E-10 70.0 16.8 97 119-226 120-216 (409)
102 KOG0551 Hsp90 co-chaperone CNS 98.6 6.6E-07 1.4E-11 71.1 10.1 109 111-227 75-183 (390)
103 PRK10370 formate-dependent nit 98.6 6.3E-07 1.4E-11 68.1 9.5 88 130-229 52-142 (198)
104 KOG2076 RNA polymerase III tra 98.5 2.4E-06 5.1E-11 75.7 13.6 137 64-228 136-272 (895)
105 PRK10866 outer membrane biogen 98.5 1.3E-05 2.7E-10 63.0 16.6 140 70-228 35-206 (243)
106 CHL00033 ycf3 photosystem I as 98.5 1.1E-06 2.4E-11 65.0 9.9 91 131-228 13-103 (168)
107 KOG0548 Molecular co-chaperone 98.5 4.5E-07 9.7E-12 76.0 8.0 97 120-228 5-101 (539)
108 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 4.1E-06 9E-11 69.7 13.7 91 119-221 202-292 (395)
109 COG2956 Predicted N-acetylgluc 98.5 9.4E-06 2E-10 64.5 14.5 101 119-226 143-243 (389)
110 cd05804 StaR_like StaR_like; a 98.5 2E-06 4.3E-11 71.1 11.5 122 82-228 58-179 (355)
111 KOG4234 TPR repeat-containing 98.5 5.2E-06 1.1E-10 61.8 12.0 125 64-211 92-216 (271)
112 KOG1586 Protein required for f 98.5 2E-05 4.4E-10 60.0 15.2 109 116-225 73-182 (288)
113 PRK04841 transcriptional regul 98.5 1.1E-05 2.5E-10 74.7 17.1 113 116-228 490-604 (903)
114 PRK14720 transcript cleavage f 98.5 2.5E-06 5.4E-11 77.2 12.1 121 82-227 46-179 (906)
115 PF14559 TPR_19: Tetratricopep 98.5 3.8E-07 8.3E-12 56.6 4.9 55 168-228 2-56 (68)
116 COG4700 Uncharacterized protei 98.4 7.6E-06 1.7E-10 60.2 12.1 124 79-228 68-191 (251)
117 KOG2003 TPR repeat-containing 98.4 8.9E-07 1.9E-11 73.2 7.8 104 113-228 520-623 (840)
118 PF14559 TPR_19: Tetratricopep 98.4 7.7E-07 1.7E-11 55.3 5.9 66 128-205 2-67 (68)
119 COG2976 Uncharacterized protei 98.4 0.00013 2.8E-09 54.2 18.2 102 116-227 88-189 (207)
120 PLN02789 farnesyltranstransfer 98.4 6.6E-06 1.4E-10 67.0 12.7 118 84-229 89-215 (320)
121 KOG1129 TPR repeat-containing 98.4 4.6E-07 1E-11 72.0 5.7 101 119-228 360-460 (478)
122 KOG1941 Acetylcholine receptor 98.4 2.8E-05 6.1E-10 62.8 15.7 114 115-228 204-322 (518)
123 COG4783 Putative Zn-dependent 98.4 6.3E-06 1.4E-10 68.7 12.4 98 116-225 339-436 (484)
124 PRK10153 DNA-binding transcrip 98.4 4.7E-06 1E-10 72.2 12.1 66 156-228 419-484 (517)
125 PF13371 TPR_9: Tetratricopept 98.4 2.1E-06 4.6E-11 54.0 7.5 58 124-187 2-59 (73)
126 PF13525 YfiO: Outer membrane 98.4 1.8E-05 3.9E-10 60.4 13.9 143 68-229 6-173 (203)
127 KOG4555 TPR repeat-containing 98.4 2.3E-05 5.1E-10 54.3 12.8 101 69-187 45-145 (175)
128 KOG0624 dsRNA-activated protei 98.4 3.9E-06 8.4E-11 67.3 10.2 104 113-228 34-137 (504)
129 PRK10747 putative protoheme IX 98.4 2.9E-05 6.3E-10 65.4 16.1 94 120-225 121-215 (398)
130 PRK10747 putative protoheme IX 98.4 1.1E-05 2.4E-10 67.9 13.3 87 129-228 306-392 (398)
131 KOG2002 TPR-containing nuclear 98.4 4.4E-06 9.6E-11 74.6 11.0 102 119-228 272-373 (1018)
132 PF09976 TPR_21: Tetratricopep 98.4 3.9E-05 8.5E-10 55.2 14.2 101 116-222 10-110 (145)
133 KOG2076 RNA polymerase III tra 98.4 7.2E-06 1.6E-10 72.7 11.9 102 116-229 138-239 (895)
134 TIGR02795 tol_pal_ybgF tol-pal 98.3 9.4E-06 2E-10 55.9 10.2 98 74-187 9-106 (119)
135 KOG3060 Uncharacterized conser 98.3 2.9E-05 6.2E-10 59.8 13.3 121 80-228 99-222 (289)
136 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 1.8E-06 4E-11 71.9 7.3 71 153-226 71-141 (453)
137 cd00189 TPR Tetratricopeptide 98.3 3.1E-06 6.7E-11 54.8 7.1 64 159-228 2-65 (100)
138 PRK10803 tol-pal system protei 98.3 1.4E-05 3E-10 63.3 11.7 91 81-187 157-247 (263)
139 PRK04841 transcriptional regul 98.3 4.5E-05 9.8E-10 70.8 17.0 116 111-227 525-642 (903)
140 TIGR00540 hemY_coli hemY prote 98.3 1.4E-05 3.1E-10 67.6 12.6 90 125-227 307-400 (409)
141 KOG4162 Predicted calmodulin-b 98.3 7.2E-06 1.6E-10 71.6 9.9 99 118-228 685-785 (799)
142 KOG1585 Protein required for f 98.2 0.00013 2.9E-09 56.0 14.7 113 116-229 30-142 (308)
143 PF12968 DUF3856: Domain of Un 98.2 0.0003 6.4E-09 48.0 14.7 110 119-228 11-131 (144)
144 KOG4642 Chaperone-dependent E3 98.2 4.1E-06 8.9E-11 63.8 6.2 96 120-227 13-108 (284)
145 COG4783 Putative Zn-dependent 98.2 2E-05 4.3E-10 65.8 10.3 101 115-227 304-404 (484)
146 KOG3060 Uncharacterized conser 98.2 0.00011 2.4E-09 56.7 13.1 97 119-227 88-184 (289)
147 PF12862 Apc5: Anaphase-promot 98.1 7.1E-05 1.5E-09 49.7 10.5 81 127-207 8-91 (94)
148 PF12688 TPR_5: Tetratrico pep 98.1 2.5E-05 5.5E-10 54.2 8.4 69 158-229 2-70 (120)
149 KOG0550 Molecular chaperone (D 98.1 7E-06 1.5E-10 67.1 6.4 113 113-227 199-317 (486)
150 PRK14574 hmsH outer membrane p 98.1 4.2E-05 9.2E-10 69.7 12.0 127 73-227 40-166 (822)
151 PF00515 TPR_1: Tetratricopept 98.1 8.9E-06 1.9E-10 43.0 4.2 29 199-227 3-31 (34)
152 PF09986 DUF2225: Uncharacteri 98.1 0.00012 2.6E-09 56.1 11.8 99 129-227 89-195 (214)
153 PF07719 TPR_2: Tetratricopept 98.0 1.5E-05 3.3E-10 42.0 4.8 32 198-229 2-33 (34)
154 KOG0545 Aryl-hydrocarbon recep 98.0 0.0001 2.3E-09 56.6 10.9 106 115-226 176-293 (329)
155 COG4785 NlpI Lipoprotein NlpI, 98.0 1.3E-05 2.9E-10 60.4 5.7 101 113-225 61-161 (297)
156 KOG1128 Uncharacterized conser 98.0 1.9E-05 4.2E-10 68.7 7.4 97 119-227 487-583 (777)
157 PF12569 NARP1: NMDA receptor- 98.0 0.00036 7.7E-09 60.5 14.7 112 111-228 188-336 (517)
158 PF13176 TPR_7: Tetratricopept 98.0 2E-05 4.2E-10 42.4 4.5 26 200-225 2-27 (36)
159 KOG1156 N-terminal acetyltrans 98.0 9.5E-05 2.1E-09 63.8 10.8 93 120-224 78-170 (700)
160 PRK14720 transcript cleavage f 98.0 0.0001 2.3E-09 67.0 11.5 106 117-229 116-255 (906)
161 PF13176 TPR_7: Tetratricopept 98.0 3E-05 6.5E-10 41.6 5.0 31 159-189 1-31 (36)
162 PF13431 TPR_17: Tetratricopep 97.9 8.6E-06 1.9E-10 43.1 2.7 34 179-218 1-34 (34)
163 PRK11906 transcriptional regul 97.9 0.00015 3.3E-09 60.8 11.0 85 132-228 319-403 (458)
164 PF13428 TPR_14: Tetratricopep 97.9 3E-05 6.4E-10 43.7 4.6 42 158-205 2-43 (44)
165 KOG1174 Anaphase-promoting com 97.9 0.00031 6.7E-09 57.9 11.9 133 74-229 341-503 (564)
166 PF00515 TPR_1: Tetratricopept 97.9 4.7E-05 1E-09 40.1 4.7 31 157-187 1-31 (34)
167 KOG1128 Uncharacterized conser 97.9 5.4E-05 1.2E-09 66.1 7.3 101 116-228 518-618 (777)
168 PF03704 BTAD: Bacterial trans 97.8 0.00074 1.6E-08 48.5 12.2 103 120-228 9-127 (146)
169 KOG4642 Chaperone-dependent E3 97.8 8.3E-05 1.8E-09 56.9 7.1 104 68-193 11-114 (284)
170 PF10602 RPN7: 26S proteasome 97.8 0.0017 3.8E-08 48.3 14.1 106 117-225 36-141 (177)
171 COG1729 Uncharacterized protei 97.8 0.0002 4.4E-09 55.9 9.2 90 82-187 156-245 (262)
172 PF10300 DUF3808: Protein of u 97.8 0.00076 1.6E-08 58.1 13.3 103 119-228 269-378 (468)
173 PRK15331 chaperone protein Sic 97.8 0.00025 5.5E-09 51.4 8.7 75 148-228 28-102 (165)
174 KOG4648 Uncharacterized conser 97.8 0.00035 7.6E-09 56.4 10.2 98 68-187 98-195 (536)
175 PF13181 TPR_8: Tetratricopept 97.8 0.0001 2.3E-09 38.7 4.9 31 198-228 2-32 (34)
176 PF06552 TOM20_plant: Plant sp 97.7 0.00042 9E-09 50.9 9.3 83 133-227 7-103 (186)
177 PF13512 TPR_18: Tetratricopep 97.7 0.00092 2E-08 47.5 10.5 103 69-187 12-129 (142)
178 KOG2376 Signal recognition par 97.7 0.0011 2.4E-08 56.9 12.3 110 119-228 112-255 (652)
179 PF07719 TPR_2: Tetratricopept 97.7 0.00016 3.4E-09 38.0 4.8 31 157-187 1-31 (34)
180 PF12862 Apc5: Anaphase-promot 97.6 0.00058 1.3E-08 45.3 8.4 63 167-229 8-73 (94)
181 COG4105 ComL DNA uptake lipopr 97.6 0.02 4.4E-07 44.6 17.5 141 69-228 36-198 (254)
182 COG4105 ComL DNA uptake lipopr 97.6 0.0046 1E-07 48.1 13.3 106 117-228 34-147 (254)
183 KOG1156 N-terminal acetyltrans 97.6 0.00075 1.6E-08 58.4 9.7 130 70-227 10-139 (700)
184 KOG0376 Serine-threonine phosp 97.5 5.6E-05 1.2E-09 63.2 2.8 96 122-229 9-104 (476)
185 KOG3785 Uncharacterized conser 97.5 0.0027 5.9E-08 51.6 12.0 61 115-181 55-115 (557)
186 PF04733 Coatomer_E: Coatomer 97.5 0.0015 3.3E-08 52.6 10.7 96 117-224 165-263 (290)
187 PF09986 DUF2225: Uncharacteri 97.5 0.0015 3.2E-08 50.2 10.1 97 82-187 92-195 (214)
188 KOG1127 TPR repeat-containing 97.5 0.00041 8.9E-09 62.8 7.7 97 119-227 564-660 (1238)
189 PRK10153 DNA-binding transcrip 97.5 0.0025 5.4E-08 55.5 12.1 107 112-228 334-451 (517)
190 KOG1174 Anaphase-promoting com 97.5 0.00091 2E-08 55.2 8.7 97 120-228 303-399 (564)
191 KOG1585 Protein required for f 97.5 0.013 2.8E-07 45.4 14.3 107 119-225 112-218 (308)
192 PF13181 TPR_8: Tetratricopept 97.5 0.00049 1.1E-08 36.1 4.9 30 158-187 2-31 (34)
193 PF13431 TPR_17: Tetratricopep 97.4 0.00011 2.3E-09 38.9 2.0 34 139-178 1-34 (34)
194 PF06552 TOM20_plant: Plant sp 97.4 0.0031 6.8E-08 46.4 10.1 49 133-187 51-110 (186)
195 KOG1127 TPR repeat-containing 97.4 0.0021 4.6E-08 58.4 10.9 106 116-227 595-701 (1238)
196 COG3071 HemY Uncharacterized e 97.4 0.0076 1.6E-07 49.5 12.8 103 119-228 265-392 (400)
197 PF13174 TPR_6: Tetratricopept 97.3 0.00045 9.7E-09 35.8 3.9 31 199-229 2-32 (33)
198 COG4785 NlpI Lipoprotein NlpI, 97.3 0.015 3.3E-07 44.3 12.9 92 69-182 67-158 (297)
199 PF12569 NARP1: NMDA receptor- 97.3 0.0016 3.6E-08 56.4 9.0 68 153-226 190-257 (517)
200 KOG2796 Uncharacterized conser 97.3 0.002 4.2E-08 50.4 8.2 107 116-228 211-317 (366)
201 PF13428 TPR_14: Tetratricopep 97.3 0.00061 1.3E-08 38.2 4.2 33 198-230 2-34 (44)
202 KOG0495 HAT repeat protein [RN 97.2 0.0034 7.3E-08 54.8 9.9 89 126-227 627-715 (913)
203 COG0457 NrfG FOG: TPR repeat [ 97.2 0.034 7.3E-07 41.4 14.8 94 126-228 139-233 (291)
204 PF13374 TPR_10: Tetratricopep 97.2 0.0011 2.4E-08 36.3 4.8 28 159-186 4-31 (42)
205 PRK11906 transcriptional regul 97.2 0.005 1.1E-07 51.9 10.5 95 116-222 337-432 (458)
206 KOG2471 TPR repeat-containing 97.2 0.00093 2E-08 56.3 6.0 88 116-209 282-381 (696)
207 KOG1308 Hsp70-interacting prot 97.1 0.00013 2.7E-09 58.7 0.6 99 116-226 113-211 (377)
208 KOG2376 Signal recognition par 97.1 0.0097 2.1E-07 51.3 11.5 98 121-227 83-205 (652)
209 PF13374 TPR_10: Tetratricopep 97.1 0.0018 3.9E-08 35.5 5.0 31 198-228 3-33 (42)
210 PF10345 Cohesin_load: Cohesin 97.1 0.03 6.6E-07 50.0 15.0 116 111-228 53-170 (608)
211 KOG4340 Uncharacterized conser 97.1 0.0028 6E-08 50.4 7.3 99 116-220 143-264 (459)
212 KOG4340 Uncharacterized conser 97.1 0.013 2.8E-07 46.8 10.8 29 119-147 46-74 (459)
213 PLN03218 maturation of RBCL 1; 97.0 0.021 4.5E-07 54.0 13.9 96 119-224 651-746 (1060)
214 KOG2796 Uncharacterized conser 97.0 0.031 6.6E-07 43.9 12.3 103 119-226 179-281 (366)
215 KOG3785 Uncharacterized conser 97.0 0.0025 5.4E-08 51.8 6.6 86 127-223 32-117 (557)
216 PLN03218 maturation of RBCL 1; 97.0 0.024 5.1E-07 53.7 13.7 98 118-225 615-712 (1060)
217 smart00028 TPR Tetratricopepti 97.0 0.0013 2.9E-08 33.0 3.3 30 199-228 3-32 (34)
218 KOG2471 TPR repeat-containing 96.9 0.0025 5.3E-08 53.9 6.3 109 119-228 242-366 (696)
219 PF10579 Rapsyn_N: Rapsyn N-te 96.9 0.036 7.8E-07 35.0 10.0 73 117-192 6-78 (80)
220 PF09295 ChAPs: ChAPs (Chs5p-A 96.9 0.028 6E-07 47.2 12.1 92 123-229 175-266 (395)
221 PLN03081 pentatricopeptide (PP 96.9 0.014 3E-07 53.1 11.2 95 117-225 290-419 (697)
222 PF11817 Foie-gras_1: Foie gra 96.9 0.039 8.5E-07 43.4 12.2 92 132-223 153-244 (247)
223 PF08631 SPO22: Meiosis protei 96.9 0.044 9.5E-07 44.0 12.7 91 128-218 4-105 (278)
224 KOG0551 Hsp90 co-chaperone CNS 96.8 0.0091 2E-07 48.1 8.4 84 142-227 66-149 (390)
225 PF04781 DUF627: Protein of un 96.8 0.02 4.4E-07 38.7 8.9 99 123-230 2-111 (111)
226 PF10602 RPN7: 26S proteasome 96.8 0.055 1.2E-06 40.3 11.9 91 135-228 14-104 (177)
227 PF04733 Coatomer_E: Coatomer 96.7 0.0045 9.7E-08 49.9 6.3 96 120-227 134-231 (290)
228 KOG4162 Predicted calmodulin-b 96.7 0.019 4.1E-07 51.0 10.1 97 118-226 651-749 (799)
229 COG0457 NrfG FOG: TPR repeat [ 96.7 0.1 2.2E-06 38.7 13.1 104 117-229 95-199 (291)
230 PF13174 TPR_6: Tetratricopept 96.6 0.0044 9.5E-08 31.9 3.7 29 159-187 2-30 (33)
231 PLN03081 pentatricopeptide (PP 96.6 0.033 7.1E-07 50.6 11.6 95 118-221 392-486 (697)
232 COG3071 HemY Uncharacterized e 96.6 0.34 7.4E-06 40.2 16.8 94 119-223 120-213 (400)
233 KOG0495 HAT repeat protein [RN 96.6 0.026 5.6E-07 49.6 9.8 95 120-226 654-748 (913)
234 PF10300 DUF3808: Protein of u 96.5 0.021 4.5E-07 49.3 9.3 88 130-225 246-333 (468)
235 KOG2300 Uncharacterized conser 96.4 0.11 2.3E-06 44.3 12.1 109 114-222 442-552 (629)
236 PLN03077 Protein ECB2; Provisi 96.4 0.069 1.5E-06 49.7 12.4 99 116-223 553-651 (857)
237 PF04184 ST7: ST7 protein; In 96.4 0.1 2.3E-06 44.5 12.0 90 132-225 215-323 (539)
238 COG4235 Cytochrome c biogenesi 96.3 0.086 1.9E-06 42.0 10.7 85 81-187 170-257 (287)
239 PF10516 SHNi-TPR: SHNi-TPR; 96.3 0.016 3.4E-07 31.3 4.6 32 158-189 2-33 (38)
240 PF03704 BTAD: Bacterial trans 96.3 0.15 3.2E-06 36.4 11.3 70 119-194 64-134 (146)
241 COG4700 Uncharacterized protei 96.3 0.33 7.1E-06 36.4 12.8 118 82-225 104-221 (251)
242 KOG0545 Aryl-hydrocarbon recep 96.2 0.039 8.5E-07 42.8 8.2 116 63-187 174-294 (329)
243 KOG2610 Uncharacterized conser 96.2 0.17 3.6E-06 41.3 11.9 94 122-223 180-273 (491)
244 PF05843 Suf: Suppressor of fo 96.2 0.03 6.4E-07 45.0 8.0 60 160-225 38-98 (280)
245 PF10516 SHNi-TPR: SHNi-TPR; 96.2 0.012 2.6E-07 31.8 3.7 31 198-228 2-32 (38)
246 KOG4814 Uncharacterized conser 96.1 0.087 1.9E-06 46.3 10.6 102 121-228 358-459 (872)
247 KOG0376 Serine-threonine phosp 96.0 0.009 1.9E-07 50.3 4.2 111 70-208 7-117 (476)
248 PRK10941 hypothetical protein; 96.0 0.081 1.8E-06 42.1 9.3 72 152-229 176-247 (269)
249 KOG3081 Vesicle coat complex C 95.9 0.24 5.2E-06 39.0 11.3 90 119-220 171-264 (299)
250 KOG3617 WD40 and TPR repeat-co 95.9 0.4 8.6E-06 43.7 13.9 107 119-225 860-995 (1416)
251 smart00028 TPR Tetratricopepti 95.9 0.013 2.8E-07 29.1 3.2 30 158-187 2-31 (34)
252 PF14853 Fis1_TPR_C: Fis1 C-te 95.9 0.084 1.8E-06 30.8 6.7 30 158-187 2-31 (53)
253 KOG1550 Extracellular protein 95.8 0.063 1.4E-06 47.4 8.8 101 116-225 243-356 (552)
254 PF12968 DUF3856: Domain of Un 95.7 0.41 9E-06 33.0 13.8 107 80-190 22-133 (144)
255 KOG4507 Uncharacterized conser 95.7 0.029 6.3E-07 48.7 5.9 94 124-228 614-707 (886)
256 PF11817 Foie-gras_1: Foie gra 95.6 0.31 6.8E-06 38.3 11.3 71 113-183 174-244 (247)
257 PRK13184 pknD serine/threonine 95.6 0.056 1.2E-06 50.2 7.9 104 122-228 480-583 (932)
258 PF05843 Suf: Suppressor of fo 95.5 0.99 2.1E-05 36.2 14.6 102 119-229 37-139 (280)
259 PLN03077 Protein ECB2; Provisi 95.5 0.15 3.2E-06 47.6 10.6 98 119-225 356-483 (857)
260 KOG2053 Mitochondrial inherita 95.4 0.38 8.3E-06 43.9 12.0 107 82-217 24-130 (932)
261 PF10579 Rapsyn_N: Rapsyn N-te 95.4 0.34 7.3E-06 30.7 8.4 66 160-228 9-74 (80)
262 PF15015 NYD-SP12_N: Spermatog 95.3 0.27 5.8E-06 41.3 10.0 104 116-225 175-290 (569)
263 KOG3617 WD40 and TPR repeat-co 95.3 0.26 5.7E-06 44.8 10.5 87 140-227 842-942 (1416)
264 KOG3081 Vesicle coat complex C 95.2 0.7 1.5E-05 36.5 11.5 64 159-228 171-238 (299)
265 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.067 1.5E-06 31.2 4.7 31 198-228 2-32 (53)
266 KOG2053 Mitochondrial inherita 95.2 0.089 1.9E-06 47.7 7.5 90 128-229 20-109 (932)
267 KOG1308 Hsp70-interacting prot 95.2 0.014 3.1E-07 47.2 2.4 85 81-187 128-212 (377)
268 KOG4814 Uncharacterized conser 95.2 1.7 3.8E-05 38.6 14.8 70 157-226 354-423 (872)
269 COG5187 RPN7 26S proteasome re 95.0 1.4 3.1E-05 35.3 12.8 133 83-228 91-223 (412)
270 KOG2300 Uncharacterized conser 95.0 0.99 2.2E-05 38.7 12.5 106 113-220 42-150 (629)
271 PF02259 FAT: FAT domain; Int 94.9 0.49 1.1E-05 38.9 11.0 114 113-228 142-289 (352)
272 COG2976 Uncharacterized protei 94.9 0.8 1.7E-05 34.5 10.6 67 114-187 123-189 (207)
273 KOG1550 Extracellular protein 94.8 0.24 5.3E-06 43.8 9.3 93 119-227 290-394 (552)
274 KOG3616 Selective LIM binding 94.7 0.9 1.9E-05 41.1 12.0 99 122-220 711-847 (1636)
275 PF07721 TPR_4: Tetratricopept 94.6 0.055 1.2E-06 26.4 2.8 23 199-221 3-25 (26)
276 PF08631 SPO22: Meiosis protei 94.6 1.9 4.2E-05 34.5 13.5 108 115-227 33-151 (278)
277 PF07721 TPR_4: Tetratricopept 94.6 0.057 1.2E-06 26.3 2.8 24 158-181 2-25 (26)
278 PF04190 DUF410: Protein of un 94.5 1.7 3.7E-05 34.5 12.6 102 119-221 12-114 (260)
279 COG0790 FOG: TPR repeat, SEL1 94.5 0.84 1.8E-05 36.6 11.0 96 118-226 110-220 (292)
280 KOG2581 26S proteasome regulat 94.4 0.92 2E-05 38.0 10.9 108 119-228 171-278 (493)
281 KOG1915 Cell cycle control pro 94.4 1.7 3.7E-05 37.3 12.5 90 129-228 449-538 (677)
282 KOG1839 Uncharacterized protei 94.3 1.5 3.3E-05 41.9 13.3 118 111-228 1009-1130(1236)
283 PF11207 DUF2989: Protein of u 94.3 0.28 6.1E-06 37.0 7.2 62 155-219 139-200 (203)
284 KOG3824 Huntingtin interacting 94.3 0.12 2.7E-06 41.5 5.5 79 115-205 114-192 (472)
285 PF09613 HrpB1_HrpK: Bacterial 94.2 1.4 3E-05 32.1 10.4 87 116-214 9-95 (160)
286 PF10255 Paf67: RNA polymerase 94.2 0.097 2.1E-06 44.0 5.1 29 197-225 164-192 (404)
287 KOG2610 Uncharacterized conser 94.1 0.36 7.9E-06 39.4 7.9 109 107-223 127-235 (491)
288 COG3629 DnrI DNA-binding trans 94.1 1.2 2.7E-05 35.6 10.8 65 156-226 152-216 (280)
289 KOG1915 Cell cycle control pro 94.0 1.5 3.2E-05 37.7 11.4 118 83-225 382-499 (677)
290 KOG1070 rRNA processing protei 93.9 1.8 3.9E-05 41.9 12.9 97 119-225 1566-1662(1710)
291 COG4649 Uncharacterized protei 93.9 1.9 4.2E-05 32.0 11.6 103 116-225 93-195 (221)
292 KOG1839 Uncharacterized protei 93.8 0.41 8.9E-06 45.4 8.7 110 119-228 975-1088(1236)
293 KOG1464 COP9 signalosome, subu 93.7 1.4 3E-05 35.1 10.1 131 83-225 43-173 (440)
294 PF13281 DUF4071: Domain of un 93.5 2.2 4.7E-05 35.7 11.7 104 119-227 181-335 (374)
295 COG3118 Thioredoxin domain-con 93.5 3.1 6.8E-05 33.4 11.9 101 120-226 137-265 (304)
296 KOG1310 WD40 repeat protein [G 93.4 0.42 9.1E-06 41.3 7.4 96 121-228 378-476 (758)
297 KOG0687 26S proteasome regulat 93.4 3.7 8.1E-05 33.5 14.7 110 116-228 103-212 (393)
298 COG4976 Predicted methyltransf 93.3 0.14 3.1E-06 39.4 4.2 55 168-228 6-60 (287)
299 KOG3824 Huntingtin interacting 93.3 0.32 6.9E-06 39.3 6.2 62 161-228 120-181 (472)
300 PF15015 NYD-SP12_N: Spermatog 93.1 4.9 0.00011 34.1 13.0 106 80-191 189-296 (569)
301 COG2909 MalT ATP-dependent tra 93.0 7.3 0.00016 36.1 14.7 90 122-212 463-552 (894)
302 PF04184 ST7: ST7 protein; In 92.9 5.7 0.00012 34.4 14.7 64 116-183 258-321 (539)
303 KOG3783 Uncharacterized conser 92.9 1.4 3E-05 38.2 9.9 79 149-227 441-521 (546)
304 COG2909 MalT ATP-dependent tra 92.8 8.1 0.00018 35.8 15.6 133 84-227 475-648 (894)
305 PF13281 DUF4071: Domain of un 92.8 5.2 0.00011 33.5 14.3 102 119-227 143-256 (374)
306 KOG3364 Membrane protein invol 92.6 2.7 5.9E-05 29.8 9.4 65 119-187 34-101 (149)
307 PF07079 DUF1347: Protein of u 92.4 1.8 3.8E-05 37.0 9.5 61 115-182 460-520 (549)
308 PF10373 EST1_DNA_bind: Est1 D 92.3 0.41 8.9E-06 38.0 5.9 62 136-209 1-62 (278)
309 KOG2047 mRNA splicing factor [ 92.2 1 2.3E-05 39.9 8.3 100 126-227 356-455 (835)
310 PF02259 FAT: FAT domain; Int 92.2 5.5 0.00012 32.6 12.6 104 118-227 185-339 (352)
311 PF10952 DUF2753: Protein of u 92.2 2.8 6E-05 29.1 8.7 64 162-225 6-78 (140)
312 KOG3364 Membrane protein invol 92.0 1.5 3.3E-05 30.9 7.5 68 156-227 31-101 (149)
313 KOG1070 rRNA processing protei 92.0 7 0.00015 38.2 13.8 100 119-228 1532-1631(1710)
314 KOG1497 COP9 signalosome, subu 92.0 3.7 8.1E-05 33.4 10.6 109 115-224 101-211 (399)
315 PF10952 DUF2753: Protein of u 92.0 2.8 6E-05 29.1 8.6 67 120-186 4-79 (140)
316 KOG2908 26S proteasome regulat 91.9 6.2 0.00013 32.4 12.3 98 127-224 85-184 (380)
317 PF11207 DUF2989: Protein of u 91.8 0.4 8.7E-06 36.2 4.9 59 116-177 140-198 (203)
318 PF10345 Cohesin_load: Cohesin 91.8 9.5 0.0002 34.4 17.9 135 82-227 75-209 (608)
319 PF07720 TPR_3: Tetratricopept 91.7 0.92 2E-05 24.0 4.9 20 160-179 4-23 (36)
320 KOG3616 Selective LIM binding 91.5 1.5 3.1E-05 39.8 8.5 100 123-223 667-791 (1636)
321 PRK10941 hypothetical protein; 91.4 3.6 7.7E-05 32.9 10.1 63 119-187 183-245 (269)
322 COG0790 FOG: TPR repeat, SEL1 91.3 3.9 8.4E-05 32.7 10.6 95 118-225 74-183 (292)
323 TIGR03504 FimV_Cterm FimV C-te 91.2 0.52 1.1E-05 26.3 3.8 25 201-225 3-27 (44)
324 PF05053 Menin: Menin; InterP 90.7 2.8 6.1E-05 36.7 9.3 84 119-203 279-364 (618)
325 COG3898 Uncharacterized membra 90.5 9.7 0.00021 32.1 17.5 96 118-225 121-216 (531)
326 PF14561 TPR_20: Tetratricopep 90.5 3.5 7.5E-05 26.9 8.0 77 138-224 9-85 (90)
327 PF04212 MIT: MIT (microtubule 90.4 1 2.2E-05 27.7 5.0 28 159-186 7-34 (69)
328 cd02680 MIT_calpain7_2 MIT: do 90.4 0.91 2E-05 28.6 4.7 26 164-189 13-38 (75)
329 KOG0686 COP9 signalosome, subu 90.3 7.5 0.00016 32.8 11.1 100 119-223 152-255 (466)
330 COG3947 Response regulator con 90.2 2.8 6.1E-05 33.7 8.3 61 161-227 283-343 (361)
331 KOG2581 26S proteasome regulat 90.0 2.4 5.1E-05 35.7 8.0 75 112-188 204-278 (493)
332 cd02682 MIT_AAA_Arch MIT: doma 89.8 1.1 2.5E-05 28.1 4.8 28 159-186 8-35 (75)
333 COG5187 RPN7 26S proteasome re 89.8 8.9 0.00019 31.0 10.8 80 131-210 89-168 (412)
334 cd02679 MIT_spastin MIT: domai 89.6 0.9 1.9E-05 28.9 4.3 26 202-227 13-38 (79)
335 KOG0546 HSP90 co-chaperone CPR 89.6 0.17 3.6E-06 41.4 1.2 103 120-228 225-340 (372)
336 KOG3783 Uncharacterized conser 89.1 3.8 8.3E-05 35.6 8.9 76 112-187 444-521 (546)
337 cd02681 MIT_calpain7_1 MIT: do 88.9 1.4 3.1E-05 27.7 4.8 30 157-186 6-35 (76)
338 TIGR02561 HrpB1_HrpK type III 88.5 7.4 0.00016 28.1 9.1 84 119-214 12-95 (153)
339 KOG2047 mRNA splicing factor [ 88.5 11 0.00024 33.9 11.3 106 119-226 389-506 (835)
340 PF07720 TPR_3: Tetratricopept 88.0 2.7 5.8E-05 22.3 4.8 28 199-226 3-32 (36)
341 KOG1463 26S proteasome regulat 87.8 14 0.00031 30.5 11.6 76 119-194 170-246 (411)
342 cd02683 MIT_1 MIT: domain cont 87.3 1.9 4.2E-05 27.2 4.7 27 160-186 9-35 (77)
343 COG5159 RPN6 26S proteasome re 87.2 14 0.00031 29.8 14.5 65 160-224 128-192 (421)
344 COG5091 SGT1 Suppressor of G2 87.1 1.2 2.6E-05 35.3 4.3 59 130-188 52-110 (368)
345 COG2178 Predicted RNA-binding 86.4 11 0.00024 28.4 8.9 105 122-226 34-150 (204)
346 COG5091 SGT1 Suppressor of G2 86.2 2.9 6.2E-05 33.2 6.0 58 172-229 54-111 (368)
347 KOG0686 COP9 signalosome, subu 86.0 14 0.00031 31.2 10.2 93 131-226 124-216 (466)
348 PF14561 TPR_20: Tetratricopep 86.0 3.5 7.7E-05 26.9 5.6 45 176-226 7-51 (90)
349 COG4976 Predicted methyltransf 86.0 1.8 4E-05 33.6 4.7 56 126-187 4-59 (287)
350 PF04212 MIT: MIT (microtubule 85.8 3.7 8E-05 25.1 5.4 33 116-148 4-36 (69)
351 TIGR03504 FimV_Cterm FimV C-te 85.6 2.1 4.6E-05 23.8 3.8 25 161-185 3-27 (44)
352 COG2912 Uncharacterized conser 85.1 5 0.00011 31.9 6.9 72 152-229 176-247 (269)
353 PF05053 Menin: Menin; InterP 85.0 16 0.00034 32.3 10.3 87 140-227 260-348 (618)
354 COG4649 Uncharacterized protei 84.7 7.4 0.00016 29.0 7.2 84 129-219 70-154 (221)
355 KOG2041 WD40 repeat protein [G 84.0 32 0.00069 31.5 11.9 70 152-221 791-876 (1189)
356 PRK13184 pknD serine/threonine 83.4 9.1 0.0002 36.2 9.0 98 82-192 490-587 (932)
357 PF12739 TRAPPC-Trs85: ER-Golg 83.3 28 0.0006 29.7 12.3 108 119-226 210-329 (414)
358 cd02682 MIT_AAA_Arch MIT: doma 83.2 9.1 0.0002 24.1 7.3 34 116-149 5-38 (75)
359 PF12854 PPR_1: PPR repeat 83.1 3.9 8.4E-05 21.1 4.0 27 196-222 6-32 (34)
360 smart00745 MIT Microtubule Int 82.8 3.7 8E-05 25.7 4.6 31 157-187 8-38 (77)
361 PF10255 Paf67: RNA polymerase 82.8 8.1 0.00017 32.8 7.7 72 119-191 124-198 (404)
362 KOG4507 Uncharacterized conser 82.1 2.1 4.5E-05 37.8 4.1 90 126-225 222-311 (886)
363 cd02683 MIT_1 MIT: domain cont 82.1 5.5 0.00012 25.1 5.1 33 116-148 5-37 (77)
364 PF11846 DUF3366: Domain of un 81.9 5.8 0.00013 29.8 6.1 33 196-228 143-175 (193)
365 KOG0687 26S proteasome regulat 81.6 28 0.00062 28.7 12.0 76 134-209 81-156 (393)
366 cd02681 MIT_calpain7_1 MIT: do 81.6 11 0.00023 23.8 8.2 34 116-149 5-38 (76)
367 COG5159 RPN6 26S proteasome re 81.5 11 0.00024 30.4 7.6 106 122-227 130-236 (421)
368 PF07079 DUF1347: Protein of u 81.2 35 0.00077 29.5 13.9 59 157-222 460-520 (549)
369 KOG1310 WD40 repeat protein [G 81.0 12 0.00026 32.9 8.1 99 65-185 372-473 (758)
370 cd02679 MIT_spastin MIT: domai 80.9 12 0.00026 23.8 6.2 32 161-192 12-43 (79)
371 KOG1463 26S proteasome regulat 80.7 31 0.00068 28.6 13.6 94 131-224 102-195 (411)
372 KOG4014 Uncharacterized conser 80.6 2.1 4.6E-05 32.0 3.1 88 131-226 41-141 (248)
373 PF12854 PPR_1: PPR repeat 80.5 4.8 0.0001 20.7 3.8 26 157-182 7-32 (34)
374 KOG1464 COP9 signalosome, subu 80.4 29 0.00062 28.0 10.7 94 130-225 40-133 (440)
375 cd02656 MIT MIT: domain contai 80.1 6.1 0.00013 24.6 4.8 27 160-186 9-35 (75)
376 PF01535 PPR: PPR repeat; Int 79.8 3.8 8.2E-05 19.9 3.2 25 200-224 3-27 (31)
377 cd02678 MIT_VPS4 MIT: domain c 79.6 6.5 0.00014 24.6 4.8 28 159-186 8-35 (75)
378 PF08626 TRAPPC9-Trs120: Trans 79.2 5.4 0.00012 38.9 6.2 54 116-169 241-294 (1185)
379 smart00745 MIT Microtubule Int 78.7 9.7 0.00021 23.7 5.5 34 116-149 7-40 (77)
380 cd02677 MIT_SNX15 MIT: domain 78.6 5.7 0.00012 24.9 4.3 24 163-186 12-35 (75)
381 PF00244 14-3-3: 14-3-3 protei 77.3 17 0.00037 28.4 7.5 55 173-227 142-199 (236)
382 PF13041 PPR_2: PPR repeat fam 77.0 7.7 0.00017 21.7 4.3 29 197-225 3-31 (50)
383 cd02684 MIT_2 MIT: domain cont 76.9 8 0.00017 24.3 4.6 27 160-186 9-35 (75)
384 KOG0890 Protein kinase of the 76.9 1E+02 0.0022 32.4 14.1 108 113-228 1666-1786(2382)
385 smart00671 SEL1 Sel1-like repe 76.9 6 0.00013 20.1 3.6 28 198-225 2-33 (36)
386 TIGR00756 PPR pentatricopeptid 76.9 7.4 0.00016 19.2 3.9 25 200-224 3-27 (35)
387 cd02684 MIT_2 MIT: domain cont 76.8 11 0.00023 23.7 5.2 33 116-148 5-37 (75)
388 COG3629 DnrI DNA-binding trans 76.6 38 0.00083 27.3 10.6 65 116-186 152-216 (280)
389 PF04053 Coatomer_WDAD: Coatom 76.5 31 0.00068 29.8 9.5 61 158-218 348-410 (443)
390 KOG4322 Anaphase-promoting com 75.8 51 0.0011 28.3 14.8 116 112-227 268-383 (482)
391 PF09670 Cas_Cas02710: CRISPR- 75.7 48 0.001 28.0 15.2 105 119-227 133-271 (379)
392 PF08238 Sel1: Sel1 repeat; I 75.7 8.5 0.00018 20.0 4.0 14 212-225 23-36 (39)
393 KOG2908 26S proteasome regulat 75.7 31 0.00068 28.5 8.6 60 166-225 84-143 (380)
394 KOG4563 Cell cycle-regulated h 75.5 17 0.00038 30.2 7.2 68 113-180 37-106 (400)
395 KOG0546 HSP90 co-chaperone CPR 74.1 5 0.00011 33.1 3.8 79 119-209 277-355 (372)
396 cd02678 MIT_VPS4 MIT: domain c 74.0 15 0.00032 22.9 5.3 33 116-148 5-37 (75)
397 COG3014 Uncharacterized protei 73.8 38 0.00082 28.2 8.6 28 199-226 127-154 (449)
398 cd02656 MIT MIT: domain contai 71.8 16 0.00036 22.6 5.2 33 117-149 6-38 (75)
399 PF13812 PPR_3: Pentatricopept 70.9 11 0.00024 18.6 4.2 27 199-225 3-29 (34)
400 cd02677 MIT_SNX15 MIT: domain 69.0 18 0.00038 22.7 4.8 34 116-149 5-38 (75)
401 COG3947 Response regulator con 68.8 41 0.00089 27.4 7.7 58 122-185 284-341 (361)
402 KOG2041 WD40 repeat protein [G 68.6 20 0.00044 32.7 6.6 32 192-223 791-822 (1189)
403 COG3118 Thioredoxin domain-con 68.6 63 0.0014 26.3 12.2 102 117-222 168-297 (304)
404 PF04053 Coatomer_WDAD: Coatom 68.4 7.3 0.00016 33.6 3.9 47 168-225 329-375 (443)
405 KOG2034 Vacuolar sorting prote 68.4 12 0.00027 34.6 5.4 58 162-228 363-420 (911)
406 PF08626 TRAPPC9-Trs120: Trans 68.3 13 0.00028 36.4 5.9 55 156-210 241-295 (1185)
407 PRK11677 hypothetical protein; 67.9 36 0.00078 24.1 6.6 16 66-81 30-45 (134)
408 KOG2561 Adaptor protein NUB1, 66.1 79 0.0017 27.3 9.2 108 120-227 166-297 (568)
409 KOG4322 Anaphase-promoting com 65.9 87 0.0019 26.9 10.4 77 113-189 309-385 (482)
410 PF04910 Tcf25: Transcriptiona 64.1 87 0.0019 26.3 10.8 102 116-222 39-164 (360)
411 KOG2114 Vacuolar assembly/sort 64.1 24 0.00052 32.7 6.2 49 139-187 349-398 (933)
412 PF00244 14-3-3: 14-3-3 protei 63.4 67 0.0015 25.1 8.1 75 115-189 114-201 (236)
413 KOG0985 Vesicle coat protein c 62.0 62 0.0014 31.2 8.5 60 157-227 1104-1163(1666)
414 KOG0739 AAA+-type ATPase [Post 61.4 76 0.0016 26.1 8.0 11 135-145 9-19 (439)
415 KOG0890 Protein kinase of the 61.3 1.4E+02 0.0031 31.5 11.2 87 133-227 1645-1732(2382)
416 KOG2758 Translation initiation 61.1 95 0.0021 25.7 9.4 79 148-228 120-198 (432)
417 PF04910 Tcf25: Transcriptiona 60.9 1E+02 0.0022 25.9 13.9 25 159-183 141-165 (360)
418 PF04781 DUF627: Protein of un 59.9 16 0.00035 24.9 3.5 47 135-187 62-108 (111)
419 COG2178 Predicted RNA-binding 59.9 75 0.0016 24.1 8.2 64 158-221 30-93 (204)
420 KOG4151 Myosin assembly protei 59.8 28 0.0006 32.0 5.9 95 119-221 55-151 (748)
421 smart00386 HAT HAT (Half-A-TPR 59.5 19 0.00042 17.3 3.7 28 171-204 1-28 (33)
422 PF09670 Cas_Cas02710: CRISPR- 58.4 1.1E+02 0.0025 25.8 9.7 65 158-226 132-198 (379)
423 cd02680 MIT_calpain7_2 MIT: do 58.4 44 0.00095 21.0 9.5 34 116-149 5-38 (75)
424 COG3914 Spy Predicted O-linked 57.1 1.5E+02 0.0032 26.7 9.7 99 123-227 73-172 (620)
425 COG2912 Uncharacterized conser 57.0 75 0.0016 25.4 7.3 60 122-187 186-245 (269)
426 KOG1538 Uncharacterized conser 56.3 1.6E+02 0.0036 27.0 10.5 30 195-224 802-831 (1081)
427 PF14863 Alkyl_sulf_dimr: Alky 55.4 73 0.0016 22.8 6.4 50 159-214 72-121 (141)
428 PF13041 PPR_2: PPR repeat fam 55.3 35 0.00075 18.9 5.4 28 158-185 4-31 (50)
429 PRK15180 Vi polysaccharide bio 54.7 51 0.0011 28.9 6.4 96 121-228 327-422 (831)
430 COG1747 Uncharacterized N-term 54.7 1.6E+02 0.0034 26.3 11.0 88 126-228 75-162 (711)
431 KOG2114 Vacuolar assembly/sort 54.4 34 0.00074 31.8 5.6 48 181-228 351-399 (933)
432 PF09613 HrpB1_HrpK: Bacterial 53.9 85 0.0019 23.0 8.8 64 156-225 9-72 (160)
433 PF06295 DUF1043: Protein of u 52.3 79 0.0017 22.1 6.8 12 68-79 28-39 (128)
434 PF14858 DUF4486: Domain of un 51.0 1.6E+02 0.0034 26.2 8.8 69 160-228 154-228 (542)
435 KOG3024 Uncharacterized conser 50.6 1.4E+02 0.0029 24.3 11.4 62 162-223 90-153 (312)
436 PF12753 Nro1: Nuclear pore co 49.7 33 0.00072 29.0 4.5 46 173-226 334-391 (404)
437 PHA02537 M terminase endonucle 49.6 1.2E+02 0.0027 23.6 8.6 99 128-228 94-209 (230)
438 KOG2709 Uncharacterized conser 49.4 1.4E+02 0.003 25.7 7.9 33 157-189 22-54 (560)
439 PF10373 EST1_DNA_bind: Est1 D 49.2 38 0.00083 26.6 4.8 61 87-169 2-62 (278)
440 PF04190 DUF410: Protein of un 49.0 1.3E+02 0.0029 23.8 10.4 90 137-226 70-170 (260)
441 TIGR02710 CRISPR-associated pr 48.7 1.5E+02 0.0033 25.1 8.2 71 151-222 124-196 (380)
442 PF02064 MAS20: MAS20 protein 48.4 50 0.0011 22.9 4.6 26 162-187 68-93 (121)
443 PF09205 DUF1955: Domain of un 48.2 1E+02 0.0022 22.1 9.4 32 195-226 118-149 (161)
444 PF08311 Mad3_BUB1_I: Mad3/BUB 47.8 92 0.002 21.6 12.5 84 131-224 40-126 (126)
445 KOG0276 Vesicle coat complex C 47.6 35 0.00076 30.6 4.5 29 197-225 666-694 (794)
446 cd07603 BAR_ACAPs The Bin/Amph 46.5 1.3E+02 0.0028 22.9 9.4 18 64-81 8-25 (200)
447 smart00101 14_3_3 14-3-3 homol 46.0 1.5E+02 0.0032 23.4 9.1 74 114-187 115-201 (244)
448 KOG1258 mRNA processing protei 45.2 2.3E+02 0.005 25.4 12.9 103 113-226 293-395 (577)
449 PF09205 DUF1955: Domain of un 44.6 1.2E+02 0.0025 21.8 6.7 32 154-185 117-148 (161)
450 PF08424 NRDE-2: NRDE-2, neces 44.5 1.8E+02 0.0038 23.9 15.5 96 129-227 77-184 (321)
451 smart00101 14_3_3 14-3-3 homol 44.1 1.6E+02 0.0034 23.3 8.2 54 173-226 144-200 (244)
452 KOG1914 mRNA cleavage and poly 44.0 2.2E+02 0.0048 25.5 8.6 54 167-226 411-464 (656)
453 COG3014 Uncharacterized protei 43.6 2E+02 0.0043 24.2 11.2 116 111-228 119-244 (449)
454 KOG4014 Uncharacterized conser 42.4 86 0.0019 23.8 5.2 64 156-226 33-102 (248)
455 KOG4563 Cell cycle-regulated h 42.4 99 0.0021 26.0 6.0 60 158-217 42-103 (400)
456 TIGR01716 RGG_Cterm transcript 42.2 1.5E+02 0.0032 22.4 8.4 74 119-192 130-203 (220)
457 PF13127 DUF3955: Protein of u 42.2 62 0.0013 19.5 3.8 50 5-54 1-53 (63)
458 PF07219 HemY_N: HemY protein 41.5 1.1E+02 0.0023 20.5 6.7 29 117-145 59-87 (108)
459 KOG2396 HAT (Half-A-TPR) repea 40.7 2.4E+02 0.0052 25.0 8.2 54 169-228 117-171 (568)
460 COG3898 Uncharacterized membra 39.9 2.4E+02 0.0053 24.2 10.4 65 156-227 328-393 (531)
461 KOG0276 Vesicle coat complex C 39.4 1.9E+02 0.004 26.4 7.5 66 158-223 667-747 (794)
462 TIGR01716 RGG_Cterm transcript 39.1 1.7E+02 0.0037 22.1 9.3 73 156-228 127-199 (220)
463 PF08969 USP8_dimer: USP8 dime 38.8 75 0.0016 21.5 4.3 36 116-151 37-72 (115)
464 PF08969 USP8_dimer: USP8 dime 38.3 1E+02 0.0023 20.8 5.0 30 198-227 39-68 (115)
465 KOG0985 Vesicle coat protein c 37.7 4.1E+02 0.0089 26.2 10.0 56 118-184 1105-1160(1666)
466 cd09243 BRO1_Brox_like Protein 36.7 2.4E+02 0.0053 23.6 7.7 34 156-189 247-280 (353)
467 PF05131 Pep3_Vps18: Pep3/Vps1 36.4 1E+02 0.0022 22.1 4.8 20 163-182 109-128 (147)
468 cd09247 BRO1_Alix_like_2 Prote 36.1 1.1E+02 0.0025 25.4 5.8 30 197-226 253-282 (346)
469 PF07219 HemY_N: HemY protein 36.0 1.3E+02 0.0029 20.1 7.2 49 158-212 60-108 (108)
470 cd09245 BRO1_UmRIM23-like Prot 35.9 2.6E+02 0.0057 24.0 7.9 32 156-187 295-326 (413)
471 PF02064 MAS20: MAS20 protein 34.9 73 0.0016 22.1 3.7 29 200-228 66-94 (121)
472 TIGR02561 HrpB1_HrpK type III 34.8 1.8E+02 0.0039 21.1 7.7 61 159-225 12-72 (153)
473 KOG3677 RNA polymerase I-assoc 33.7 50 0.0011 28.2 3.2 26 201-226 276-301 (525)
474 cd09247 BRO1_Alix_like_2 Prote 33.5 2.8E+02 0.0061 23.1 9.3 55 135-189 214-285 (346)
475 cd08977 SusD starch binding ou 33.4 1.5E+02 0.0033 24.4 6.2 32 194-225 173-209 (359)
476 cd09034 BRO1_Alix_like Protein 32.6 2.8E+02 0.0061 22.8 7.8 55 135-189 211-283 (345)
477 COG3105 Uncharacterized protei 32.5 1.8E+02 0.0039 20.5 5.3 10 70-79 39-48 (138)
478 PHA02537 M terminase endonucle 32.4 1.8E+02 0.0039 22.7 5.9 43 116-158 168-219 (230)
479 PF08311 Mad3_BUB1_I: Mad3/BUB 32.4 1.1E+02 0.0025 21.1 4.5 46 135-184 81-126 (126)
480 cd08977 SusD starch binding ou 32.3 1.8E+02 0.004 23.9 6.5 33 153-185 172-209 (359)
481 PF11846 DUF3366: Domain of un 32.1 2.1E+02 0.0046 21.2 8.7 32 156-187 143-174 (193)
482 cd00215 PTS_IIA_lac PTS_IIA, P 32.0 1.5E+02 0.0033 19.6 4.8 33 154-186 12-44 (97)
483 KOG1811 Predicted Zn2+-binding 31.0 1.7E+02 0.0036 26.7 6.0 32 196-227 586-617 (1141)
484 TIGR00823 EIIA-LAC phosphotran 30.4 1.7E+02 0.0036 19.5 4.8 33 154-186 14-46 (99)
485 PF07172 GRP: Glycine rich pro 30.1 44 0.00096 22.1 1.9 6 8-13 4-9 (95)
486 PF02255 PTS_IIA: PTS system, 29.2 1.7E+02 0.0037 19.3 4.8 33 154-186 11-43 (96)
487 PF10366 Vps39_1: Vacuolar sor 28.4 81 0.0018 21.3 3.1 28 158-185 40-67 (108)
488 COG5107 RNA14 Pre-mRNA 3'-end 27.5 2.4E+02 0.0051 24.8 6.1 71 109-185 34-104 (660)
489 PF12309 KBP_C: KIF-1 binding 27.5 1.4E+02 0.0029 25.3 4.8 55 174-228 266-340 (371)
490 PRK04778 septation ring format 27.0 4.7E+02 0.01 23.5 9.2 87 118-212 480-566 (569)
491 COG5290 IkappaB kinase complex 26.8 4.1E+02 0.0089 25.3 7.7 26 200-225 938-963 (1243)
492 PRK09591 celC cellobiose phosp 26.6 2E+02 0.0044 19.3 4.8 32 154-185 17-48 (104)
493 KOG0292 Vesicle coat complex C 26.2 1.9E+02 0.0042 27.6 5.7 44 169-223 655-698 (1202)
494 PF04348 LppC: LppC putative l 26.1 22 0.00048 31.5 0.0 103 116-224 23-125 (536)
495 PRK10454 PTS system N,N'-diace 26.0 2.1E+02 0.0046 19.6 4.8 33 154-186 28-60 (115)
496 cd09245 BRO1_UmRIM23-like Prot 25.5 3.5E+02 0.0076 23.2 7.0 32 196-227 295-326 (413)
497 cd09242 BRO1_ScBro1_like Prote 24.5 4.2E+02 0.009 22.1 7.8 33 157-189 244-276 (348)
498 PF07575 Nucleopor_Nup85: Nup8 24.4 1.5E+02 0.0034 26.5 4.9 47 139-185 407-453 (566)
499 PRK15180 Vi polysaccharide bio 24.3 3.8E+02 0.0082 23.9 6.8 55 162-222 328-382 (831)
500 TIGR03362 VI_chp_7 type VI sec 24.1 4E+02 0.0087 21.8 7.3 61 164-227 220-280 (301)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.55 E-value=6.2e-14 Score=118.08 Aligned_cols=129 Identities=20% Similarity=0.282 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc
Q 026948 71 NEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV 150 (230)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~ 150 (230)
++..+.+.+.++-.++...|.+++.+.+. .+.+.+++|.+|..+|.++.|...|.+++++.+.
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~----------------hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~- 386 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPN----------------HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE- 386 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCc----------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-
Confidence 33344444444445555566666666555 5667888888888888888888888888886555
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.+.++.|||.+|.++|++++|+.+|+.++++. |..++++.|+|.+|.++|+-+.|+.+|.+|+.+.
T Consensus 387 -----~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 387 -----FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred -----hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 78888888888888888888888888888885 7888888888888888888888888888888764
No 2
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.53 E-value=2.4e-13 Score=101.93 Aligned_cols=128 Identities=17% Similarity=0.223 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH
Q 026948 75 RQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI 154 (230)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 154 (230)
..+...+....+..++++++...|. ...++..++.+|...|+.+.|.+.|++|+++.++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs----------------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~----- 101 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPS----------------YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN----- 101 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-----
Confidence 3344445667777788899988887 5668889999999999999999999999997776
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 155 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 155 ~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
....++|.|..++.+|+|++|..+|++|+.-. ..+..+.++.|+|.|-.+.|+++.|.++|++++++-+
T Consensus 102 -~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P----~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp 170 (250)
T COG3063 102 -NGDVLNNYGAFLCAQGRPEEAMQQFERALADP----AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP 170 (250)
T ss_pred -ccchhhhhhHHHHhCCChHHHHHHHHHHHhCC----CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence 78889999999999999999999999997653 3456788999999999999999999999999998653
No 3
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.52 E-value=1.9e-13 Score=98.57 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=89.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 199 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 199 (230)
+..+|..+...|++++|+.+|++++.+.+. ...++.++|.++...|++++|+..|++++.+. |..+.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~------p~~~~a 94 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW------SWRAHIALAGTWMMLKEYTTAINFYGHALMLD------ASHPEP 94 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCCcHH
Confidence 556899999999999999999999985444 78899999999999999999999999999985 888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 200 YGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
++++|.++..+|++++|+..|++++++.+.
T Consensus 95 ~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 95 VYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999987653
No 4
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.52 E-value=5.7e-13 Score=101.11 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=105.3
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
+.+..+..+++.+...|. +...+..+|.+|...|++++|+..|++++++.++ ....+.
T Consensus 54 ~~~~~i~~l~~~L~~~P~----------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~------~~~~~~ 111 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQ----------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE------NAELYA 111 (198)
T ss_pred hHHHHHHHHHHHHHHCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 456667778888887776 5668999999999999999999999999997766 788899
Q ss_pred HHHHHH-HHcCC--HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 162 GLGASL-QRQGK--YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 162 ~lg~~~-~~~~~--~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
++|.++ ...|+ +++|...++++++.. |....++.++|.++...|++++|+.+|+++++..++
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~d------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALD------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhC------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 999975 67787 599999999999986 888999999999999999999999999999987654
No 5
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.50 E-value=2.3e-13 Score=114.65 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948 68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 147 (230)
Q Consensus 68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~ 147 (230)
+.+++.++...+.+..+.+..-|.++++..|. -+.++.++|.+|-++|++++|+.+|++++++.
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~p~----------------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVFPE----------------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhChh----------------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 56677677777777888888889999988886 55688999999999999999999999999965
Q ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
+. .+.++.|+|+.|..+|+.+.|+.+|.+||.+. |..++++.|+|.+|...|+..+|+..|+.++.+-
T Consensus 419 P~------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n------Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 419 PT------FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN------PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred ch------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC------cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 55 99999999999999999999999999999996 8899999999999999999999999999999864
Q ss_pred h
Q 026948 228 E 228 (230)
Q Consensus 228 ~ 228 (230)
+
T Consensus 487 P 487 (966)
T KOG4626|consen 487 P 487 (966)
T ss_pred C
Confidence 3
No 6
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.45 E-value=2.7e-12 Score=91.91 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948 114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 193 (230)
Q Consensus 114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 193 (230)
.+.....+..|..++..|++++|...|+-...+.+. ....+++||.++..+|+|.+|++.|.+++.+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~------ 99 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK------ 99 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence 446667889999999999999999999999986555 88999999999999999999999999999986
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 194 SGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
++.+..+.+.|.|+...|+.+.|...|+.++.+.
T Consensus 100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999876
No 7
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=9.5e-13 Score=102.39 Aligned_cols=104 Identities=25% Similarity=0.370 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
+...+..+-.-|.-.+..++|.+|+..|.+|+.+.++ .+..|++.+.+|.++|+|+.|++.++.|+.++
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD----- 145 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT------NAVYYCNRAAAYSKLGEYEDAVKDCESALSID----- 145 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC------cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----
Confidence 4556667778999999999999999999999997766 78889999999999999999999999999996
Q ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 193 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
|....+|..||.+|..+|++++|++.|+|||++-+
T Consensus 146 -p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 146 -PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP 180 (304)
T ss_pred -hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC
Confidence 88999999999999999999999999999998754
No 8
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.44 E-value=1.7e-12 Score=83.55 Aligned_cols=75 Identities=28% Similarity=0.546 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
+..+.++.++|.++..+|+|++|+++|++++++.+..++.. ..+.++.++|.+|..+|++++|+.++++++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 44678899999999999999999999999999966666543 5688999999999999999999999999999876
No 9
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=6.2e-12 Score=101.52 Aligned_cols=103 Identities=19% Similarity=0.107 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948 115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 194 (230)
Q Consensus 115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 194 (230)
..+..++.+|.+|...|++++|+..|++++++.++ .+.+++++|.++...|++++|+..|++++++. |
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P 129 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD------P 129 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------C
Confidence 34567889999999999999999999999996554 67889999999999999999999999999885 7
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
....++.++|.++...|++++|+..++++++..+.
T Consensus 130 ~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 130 TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 77889999999999999999999999999987654
No 10
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.41 E-value=5.1e-12 Score=90.02 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
.....+.+|..+...|++++|...+++++...+. ...++.++|.++...|++++|+.++++++++. |.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~ 83 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYALAAALD------PD 83 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CC
Confidence 4556889999999999999999999999885443 67889999999999999999999999998885 66
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
....++++|.+|...|++++|..+|+++++..+.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7899999999999999999999999999987653
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=4.5e-11 Score=91.93 Aligned_cols=119 Identities=19% Similarity=0.270 Sum_probs=93.0
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
+.+.++..+.+++...+. ....+..+|.++...|++++|+.++.++++.. ........+.
T Consensus 80 ~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~ 139 (234)
T TIGR02521 80 ELEKAEDSFRRALTLNPN----------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP----LYPQPARSLE 139 (234)
T ss_pred CHHHHHHHHHHHHhhCCC----------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc----ccccchHHHH
Confidence 445556666666655443 22367788999999999999999999988732 1223456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
++|.++...|++++|+.++++++... +.....+..+|.++...|++++|..+++++++.
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 140 NAGLCALKAGDFDKAEKYLTRALQID------PQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999999999999999999998874 555778889999999999999999999998876
No 12
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=1.5e-10 Score=98.45 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=116.8
Q ss_pred HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHH
Q 026948 81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKK 158 (230)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~ 158 (230)
.++..++..|.+++..... ....+...-+.++.++|..|...|+|++|..++++|+++..+. ...+....
T Consensus 255 ~k~~eAv~ly~~AL~i~e~--------~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREE--------VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred ccHHHHHHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 3566777777777766543 1224556677788899999999999999999999999999872 35556777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+.+++.++..++++++|+.++++++++.... .+.+..+..+.++|.+|..+|+|++|.+.|++|+.+..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998843 34446788999999999999999999999999999874
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.33 E-value=4.4e-11 Score=105.94 Aligned_cols=98 Identities=9% Similarity=0.129 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948 118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 197 (230)
Q Consensus 118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 197 (230)
.+++.+|.+++..|++++|+.+|++++++.+. ...++.++|.++...|++++|+..|+++++.. |..+
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------P~~~ 467 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF------PEAP 467 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCh
Confidence 35556666666666666666666666664333 44556666777777777777777777766653 5556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.++..+|.++..+|++++|+..|++++.+.
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 667777777777777777777777776654
No 14
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.32 E-value=5.3e-12 Score=102.13 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=53.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 199 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 199 (230)
+.++|++|...|+++.|+++|++++.++..+++....+..++.||+.|.-..++++||+|+++-+.+.++.+|..+...+
T Consensus 238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Ra 317 (639)
T KOG1130|consen 238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRA 317 (639)
T ss_pred hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33444444455555555555555555555555555555555555555555555555555555555555544444444455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 200 YGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
++.+|.+|-.+|+.++|..+.++.+++
T Consensus 318 cwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 318 CWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 555555555555555555544444443
No 15
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.2e-11 Score=98.07 Aligned_cols=118 Identities=19% Similarity=0.346 Sum_probs=93.8
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
+.+.++..|++++..-|. ...++.-+|+-|..+++...|++.|++|+++.+. ..++++
T Consensus 345 eHEKAv~YFkRALkLNp~----------------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~------DyRAWY 402 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPK----------------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR------DYRAWY 402 (559)
T ss_pred hHHHHHHHHHHHHhcCcc----------------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch------hHHHHh
Confidence 346666667777766655 5557778888888888888888888888886655 778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
++|..|--++.+.=|+-+|++|+... |.++..|..||.||.++++.++|+.+|.+|+...
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~k------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELK------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcC------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 88888888888888888888888774 7778888888888888888888888888887654
No 16
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.31 E-value=1.3e-10 Score=86.12 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=88.5
Q ss_pred ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948 112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191 (230)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~ 191 (230)
.....+..++.+|.++..+|++++|+..|.+++.+.+ ++.....++.++|.++...|++++|+.++++++.+.
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---- 102 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---- 102 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 3344677889999999999999999999999998743 233356689999999999999999999999999885
Q ss_pred CcccHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhhh
Q 026948 192 EYSGSTEAYGAIADCYT-------ELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 192 ~~~~~~~~~~~lg~~y~-------~~g~~~~A~~~~~~al~~~~ 228 (230)
+.....+.++|.++. .+|+++.|..++++++..++
T Consensus 103 --~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 103 --PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred --cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 555566777777777 89999988888888776653
No 17
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.31 E-value=1.9e-10 Score=92.20 Aligned_cols=146 Identities=20% Similarity=0.292 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948 70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 149 (230)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 149 (230)
....+...........+...|.++...... .++....+..+...+.+|... ++++|+++|++++.++..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~----------~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEK----------LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh
Confidence 333334343434667777777777766654 344555566666777777666 999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 150 VKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 150 ~~~~~~~~~~~~~lg~~~~~~-~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
.+.....+.++..+|.+|... |++++|+++|++|+++.+..+.......++..+|.++..+|+|++|++.|++....
T Consensus 107 ~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 107 AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999999999988877778889999999999999999999999998764
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.30 E-value=5.3e-11 Score=105.45 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948 69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 148 (230)
Q Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 148 (230)
.+...+.-.....+.+.++..+.+++...|. ....++.+|.++...|++++|+.++++++++.+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~----------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 396 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPR----------------VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3444444444555888899999999988775 445788999999999999999999999998644
Q ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
. ...+++++|.++...|++++|+.+|++++++. |.....+.++|.++..+|++++|+..|++++...+
T Consensus 397 ~------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 397 E------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4 56789999999999999999999999999885 77788999999999999999999999999998765
Q ss_pred c
Q 026948 229 S 229 (230)
Q Consensus 229 ~ 229 (230)
.
T Consensus 465 ~ 465 (615)
T TIGR00990 465 E 465 (615)
T ss_pred C
Confidence 3
No 19
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.30 E-value=8e-11 Score=75.72 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI-EEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 188 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~-~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~ 188 (230)
.+.++.++|.+|..+|+|++|+.+|++++++....++.. ..+.++.++|.++...|++++|++++++++++.+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 456788999999999999999999999999977777654 4689999999999999999999999999999864
No 20
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.29 E-value=4.1e-11 Score=97.07 Aligned_cols=136 Identities=18% Similarity=0.264 Sum_probs=121.1
Q ss_pred HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948 83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 162 (230)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 162 (230)
.+.+...|..-++.... .++...+-.++=++|+.|+-.|+|+.|+...+.-+.+++..+|.....+++.|
T Consensus 171 l~~Av~fy~eNL~l~~~----------lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sN 240 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEK----------LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSN 240 (639)
T ss_pred HHHHHHHHHHHHHHHHH----------hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcc
Confidence 44444555555555544 35555566688899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
+|+++.-.|+++.|+++|++.+.+..+.++....+...+.+|.+|....++++|+.|+++-+.+.+
T Consensus 241 lgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 241 LGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred cchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999875
No 21
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=1.1e-10 Score=91.02 Aligned_cols=124 Identities=15% Similarity=0.236 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 026948 63 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKA 142 (230)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 142 (230)
.....++|..++.......+++.++..|.+++...|. ++..+.+++..|.++|.|+.|+...+.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~----------------nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT----------------NAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC----------------cchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3445568888999999999999999999999999987 555666999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHH
Q 026948 143 ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 214 (230)
Q Consensus 143 al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 214 (230)
++.+.+. ..++|..||.+|..+|+|.+|++.|+++|++. |.......+|..+-.++++.+
T Consensus 141 Al~iDp~------yskay~RLG~A~~~~gk~~~A~~aykKaLeld------P~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPH------YSKAYGRLGLAYLALGKYEEAIEAYKKALELD------PDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChH------HHHHHHHHHHHHHccCcHHHHHHHHHhhhccC------CCcHHHHHHHHHHHHHhcCCC
Confidence 9996555 89999999999999999999999999999996 778888899988888777665
No 22
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.26 E-value=8.2e-11 Score=97.22 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=89.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 199 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 199 (230)
+...|...+..|+|++|+..|.+++++.+. ...++.++|.++...|++++|+..+++++.+. |..+.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------P~~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN------NAELYADRAQANIKLGNFTEAVADANKAIELD------PSLAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCCHHH
Confidence 556789999999999999999999997655 67789999999999999999999999999996 778899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 200 YGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
|+++|.++..+|+|++|+.+|++++.+.+.
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999987643
No 23
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6e-11 Score=99.16 Aligned_cols=119 Identities=24% Similarity=0.340 Sum_probs=102.2
Q ss_pred hhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHH
Q 026948 88 ESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGAS 166 (230)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~-~~~~~~~lg~~ 166 (230)
.-+.+++...|. +...+..+|.+.+..+.|++|..+|+.++...+....... -.....|||.+
T Consensus 401 ~Ff~~A~ai~P~----------------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 401 KFFKQALAIAPS----------------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHhcCCC----------------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 345667777765 4457788999999999999999999999977776544443 45668999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 167 LQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 167 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
+++++.|++||.+|++++.+. |..+.+|..+|.+|..+|++++|+++|.++|.+-+
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLS------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcC------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 999999999999999999986 77899999999999999999999999999998654
No 24
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.25 E-value=1.1e-10 Score=76.16 Aligned_cols=84 Identities=26% Similarity=0.410 Sum_probs=69.5
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 026948 129 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 208 (230)
Q Consensus 129 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 208 (230)
.+|+|+.|+.++++.++..+. +. ....++.+|.++++.|+|++|++.+++ .+.. +......+.+|.|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~------~~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD------PSNPDIHYLLARCLL 69 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH------HCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC------CCCHHHHHHHHHHHH
Confidence 368999999999999997764 22 455677799999999999999999999 5554 455677888899999
Q ss_pred HcCCHHHHHHHHHHH
Q 026948 209 ELGDLERAARFYDKY 223 (230)
Q Consensus 209 ~~g~~~~A~~~~~~a 223 (230)
++|+|++|+..+++|
T Consensus 70 ~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 KLGKYEEAIKALEKA 84 (84)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcC
Confidence 999999999999876
No 25
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.24 E-value=6.5e-11 Score=74.24 Aligned_cols=65 Identities=31% Similarity=0.471 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Q 026948 157 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG-DLERAARFYDKYISRL 227 (230)
Q Consensus 157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-~~~~A~~~~~~al~~~ 227 (230)
+..+..+|.++...|+|++|+.+|++++++. |..+.+++++|.+|..+| ++++|+.++++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 5678899999999999999999999999996 788999999999999999 7999999999999864
No 26
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.24 E-value=8.4e-09 Score=81.45 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=89.7
Q ss_pred HHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948 118 LSRLKTGKNF-LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 196 (230)
Q Consensus 118 ~~~~~~g~~~-~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 196 (230)
...+..|..+ ...|+|++|+..|++.++.+++ ......+++.+|.+|+..|+|++|+..|+++++.. ++.+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~ 216 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKA 216 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcch
Confidence 3566677765 5679999999999999986655 23346789999999999999999999999987664 455678
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 197 TEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
+++++.+|.++..+|++++|...|+++++.+++
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 899999999999999999999999999987653
No 27
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.23 E-value=5.4e-10 Score=83.07 Aligned_cols=106 Identities=19% Similarity=0.324 Sum_probs=85.0
Q ss_pred ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948 112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191 (230)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~ 191 (230)
+....+..++.+|..+...|++++|+.+|++++++.+.. .....++.++|.++...|++++|+.++++++.+.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 102 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEHDKALEYYHQALELN---- 102 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 344567788999999999999999999999999875542 2245789999999999999999999999999985
Q ss_pred CcccHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHh
Q 026948 192 EYSGSTEAYGAIADCYTELGD-------LERAARFYDKYISR 226 (230)
Q Consensus 192 ~~~~~~~~~~~lg~~y~~~g~-------~~~A~~~~~~al~~ 226 (230)
|.....+..+|.++...|+ +++|...|+++++.
T Consensus 103 --p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~ 142 (172)
T PRK02603 103 --PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY 142 (172)
T ss_pred --cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence 6667888899999988766 44555555555444
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-10 Score=94.96 Aligned_cols=118 Identities=27% Similarity=0.378 Sum_probs=106.1
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
....+++.|+++++..|. +..+++.+|+.|..++-.--|+.+|++|+++-+. ..+.+.
T Consensus 379 Nt~AAi~sYRrAvdi~p~----------------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn------DsRlw~ 436 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPR----------------DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN------DSRLWV 436 (559)
T ss_pred ccHHHHHHHHHHHhcCch----------------hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC------chHHHH
Confidence 568888999999988877 6779999999999999999999999999996554 788899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.||.||.+.++.++|+++|.+|+... .-...++..||..|.+++++++|..+|++.++..
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~~------dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILLG------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999885 2256889999999999999999999999999854
No 29
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=1.3e-09 Score=92.80 Aligned_cols=147 Identities=15% Similarity=0.124 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-
Q 026948 73 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELL-SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV- 150 (230)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~- 150 (230)
....+...++++.+...+..++....+. .+.....+. ....+|..|..+++|++|+..|++|+++....
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~---------~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKT---------SGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHc---------cCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 4455555567888888888888774331 112222333 34469999999999999999999999999864
Q ss_pred -CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 151 -KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 151 -~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.+++..+..+.+||..|...|+|++|..++++|+++.++. ...+.....+.+++.++..++++++|..+++++++++
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4777788899999999999999999999999999999883 3445677889999999999999999999999999987
Q ss_pred h
Q 026948 228 E 228 (230)
Q Consensus 228 ~ 228 (230)
.
T Consensus 356 ~ 356 (508)
T KOG1840|consen 356 L 356 (508)
T ss_pred H
Confidence 5
No 30
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.22 E-value=3.9e-10 Score=78.13 Aligned_cols=105 Identities=24% Similarity=0.250 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
.++.+|..+...|++++|+..+.+++...+ +......+++.+|.++...|++++|+.+|++++... ++.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~ 77 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYP---KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKSPKAPD 77 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCCCcccH
Confidence 678899999999999999999999987543 223346788999999999999999999999998764 22233467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
++..+|.++..+|++++|..+++++++..++
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 8999999999999999999999999987654
No 31
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.19 E-value=6.2e-10 Score=89.28 Aligned_cols=112 Identities=24% Similarity=0.324 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 196 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 196 (230)
+..+..-|..|...+++++|.++|.++..+..+.++....+.++...+.++.+. ++++|+++|++++.+....++...-
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 334557889999999999999999999999999889888999999999998777 9999999999999999999988888
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhc
Q 026948 197 TEAYGAIADCYTEL-GDLERAARFYDKYISRLES 229 (230)
Q Consensus 197 ~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~ 229 (230)
+.++.++|.+|... |++++|+++|++|+++++.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999998864
No 32
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.18 E-value=2.6e-10 Score=74.72 Aligned_cols=98 Identities=27% Similarity=0.405 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
+++.+|..+...|++++|+..++++++..+. ...++..+|.++...+++++|++++++++... +....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALELD------PDNAK 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------Ccchh
Confidence 4678899999999999999999999986443 34778999999999999999999999998875 44557
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
++..+|.++...|++++|..+++++++..+
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 899999999999999999999999987653
No 33
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=4.6e-10 Score=84.53 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948 114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 193 (230)
Q Consensus 114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 193 (230)
...+.+...+|.-|+..|++..|...++++++..++ ...++..++.+|...|+.+.|-+.|++|+.+.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs------~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~------ 99 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS------YYLAHLVRAHYYQKLGENDLADESYRKALSLA------ 99 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC------
Confidence 345567889999999999999999999999996555 88899999999999999999999999999996
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 194 SGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
|...++++|.|.-.+.+|+|++|..+|++|+.-
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~ 132 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD 132 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence 888999999999999999999999999999873
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.17 E-value=1.5e-09 Score=83.32 Aligned_cols=122 Identities=21% Similarity=0.314 Sum_probs=80.3
Q ss_pred HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948 81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 160 (230)
.+.+.++..+.+++...|. ....+..+|.++...|++++|+.+++++++..+. ...++
T Consensus 45 ~~~~~A~~~~~~~l~~~p~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~ 102 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPD----------------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN------NGDVL 102 (234)
T ss_pred CCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHH
Confidence 3455555556555554443 2335666777777777777777777777775433 34566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.++|.++...|++++|+.++++++... ..+.....+.++|.++...|++++|..+++++++..+
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDP----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcc----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 777777777777777777777776532 1233455677777777777777777777777776543
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=5.4e-11 Score=101.03 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 196 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 196 (230)
++++.-+|.-+..+..||+|..+|++|+.+.++ ..++++++|.+|.++++++.|.-+|++|+++. |..
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r------hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN------P~n 522 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGVDPR------HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN------PSN 522 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcCCch------hhHHHHhhhhheeccchhhHHHHHHHhhhcCC------ccc
Confidence 334444555555555566666666666554333 66677777777777777777777777777775 556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 197 TEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
......+|..+.++|+.|+|+..|++|+.+
T Consensus 523 svi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 523 SVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 666777777777777777777777777654
No 36
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.15 E-value=6.4e-10 Score=102.12 Aligned_cols=99 Identities=15% Similarity=0.214 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948 118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 197 (230)
Q Consensus 118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 197 (230)
..+..+|.++...|++++|+..|.+++.+.+. ...++.++|.++...|++++|++.|++++++. |..+
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~------P~~~ 677 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIAQSREMLERAHKGL------PDDP 677 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCH
Confidence 46788999999999999999999999996655 67899999999999999999999999999986 8889
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.++.++|.++..+|++++|+.+|+++++..+
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999998654
No 37
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.14 E-value=1e-08 Score=74.06 Aligned_cols=99 Identities=26% Similarity=0.298 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
...+.+.+|..++..|++++|...|++++.-. .+......+...++.++...|+|++|+..++.. .+.+.
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~~ 116 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARILLQQGQYDEALATLQQI-------PDEAF 116 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcch
Confidence 45578889999999999999999999988832 455667788999999999999999999999662 13355
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYI 224 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al 224 (230)
.+..+..+|++|...|++++|+..|++|+
T Consensus 117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 117 KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 67788899999999999999999999985
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=9.9e-10 Score=96.09 Aligned_cols=116 Identities=15% Similarity=-0.038 Sum_probs=82.9
Q ss_pred HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948 83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 162 (230)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 162 (230)
...++..+++++...|. ...++..+|.++...|++++|+..|++++++.++ .+.+++.
T Consensus 320 ~~~A~~~~~~Al~ldP~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~ 377 (553)
T PRK12370 320 MIKAKEHAIKATELDHN----------------NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYY 377 (553)
T ss_pred HHHHHHHHHHHHhcCCC----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHH
Confidence 34555566666666554 3446677788888888888888888888886555 5667788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
+|.++...|++++|+..+++++++. |.....+..++.++...|++++|+..+++++..
T Consensus 378 lg~~l~~~G~~~eAi~~~~~Al~l~------P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 378 YGWNLFMAGQLEEALQTINECLKLD------PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC------CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 8888888888888888888888775 444444455555566677777777777776654
No 39
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.13 E-value=7.1e-10 Score=79.96 Aligned_cols=109 Identities=9% Similarity=0.025 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh
Q 026948 74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP 153 (230)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 153 (230)
+......++.+.++..+++++...|. ...++..+|.++...|++++|+..|.+++.+.+.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---- 90 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPW----------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---- 90 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC----
Confidence 44444555677788888888877765 5668899999999999999999999999996555
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948 154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 210 (230)
Q Consensus 154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 210 (230)
.+.+++++|.++...|++++|+..|++++.+. |..+..+.+.|.+...+
T Consensus 91 --~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~------p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 91 --HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS------YADASWSEIRQNAQIMV 139 (144)
T ss_pred --CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHH
Confidence 78899999999999999999999999999986 77888888888876544
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=7.7e-10 Score=96.79 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=98.7
Q ss_pred HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHHhcCCh
Q 026948 83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLR---------NQDLEKAFTEFKAALELAQNVKDP 153 (230)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------~g~~~~A~~~~~~al~l~~~~~~~ 153 (230)
.+.++..+.+++...|. .+.++..+|.+|.. .+++++|...+++++++.+.
T Consensus 277 ~~~A~~~~~~Al~ldP~----------------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~---- 336 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN----------------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN---- 336 (553)
T ss_pred HHHHHHHHHHHHhcCCc----------------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC----
Confidence 45666677777776665 34456667766652 34589999999999996655
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
...++..+|.++...|++++|+..|++++++. |..+.+++.+|.++...|++++|+.++++++++.+.
T Consensus 337 --~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 337 --NPQALGLLGLINTIHSEYIVGSLLFKQANLLS------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 67888999999999999999999999999996 888899999999999999999999999999987543
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.11 E-value=3.4e-09 Score=85.65 Aligned_cols=128 Identities=15% Similarity=0.068 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948 70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 149 (230)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 149 (230)
..+.+......++.+.++..|.+++...|. ...+++.+|..+...|++++|+..|++++++.++
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~ 130 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD----------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT 130 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 444455555555777788888888887776 4568899999999999999999999999997655
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
...++.++|.++...|++++|++.|+++++.. |..+.. ..........+++++|+..+++++..
T Consensus 131 ------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~------P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 131 ------YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD------PNDPYR-ALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 67789999999999999999999999999875 433321 11122345678999999999877643
No 42
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=1.7e-10 Score=96.81 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
+......+|.+|+..|+|++|+++|+.||. ..+.....++.||..+....+..+||..|++|+++. |.
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq------P~ 496 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQ------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ------PG 496 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHh------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC------CC
Confidence 445677899999999999999999999999 444488889999999999999999999999999996 99
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
...+.+|||.++..+|.|++|.++|-.||.+.+.
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999987653
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.10 E-value=7.2e-09 Score=80.82 Aligned_cols=141 Identities=14% Similarity=0.102 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948 69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 148 (230)
Q Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 148 (230)
.+...+.......+.+.++..+.+.+...|. + .....+++.+|.+++..|++++|+..|+++++..+
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-----------~--~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPF-----------S--PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP 101 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------c--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc
Confidence 4445555555666777788888887777664 1 11334678999999999999999999999999766
Q ss_pred hcCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhCCcccHHH--------------HHHHHHHH
Q 026948 149 NVKDPIEEKKAARGLGASLQRQ--------GKYREAIKYHSMVLQISEREGEYSGSTE--------------AYGAIADC 206 (230)
Q Consensus 149 ~~~~~~~~~~~~~~lg~~~~~~--------~~~~~Ai~~~~~al~~~~~~~~~~~~~~--------------~~~~lg~~ 206 (230)
+.. ....+++.+|.++... |++++|++.|++++..... .+.... ....+|..
T Consensus 102 ~~~---~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 102 NHP---DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN---SEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred CCC---chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 522 2345788899999876 8899999999999877522 111111 12478999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhh
Q 026948 207 YTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 207 y~~~g~~~~A~~~~~~al~~~~ 228 (230)
|...|++++|+..|+++++.++
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p 197 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYP 197 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCC
Confidence 9999999999999999998764
No 44
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.07 E-value=2.4e-09 Score=95.33 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCHHH----HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948 119 SRLKTGKNFLRNQDLEK----AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 194 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~----A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 194 (230)
++..+|..+...|++++ |+..|++++++.+. ...++.++|.++...|++++|+.++++++.+. |
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~------P 315 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD------NVRIVTLYADALIRTGQNEKAIPLLQQSLATH------P 315 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------C
Confidence 33444555555555443 44444444443322 33444444444444455555555444444442 3
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948 195 GSTEAYGAIADCYTELGDLERAARFYDKYI 224 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 224 (230)
..+.++.++|.++...|++++|+..|++++
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444444444444444444444444
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.07 E-value=3.2e-09 Score=100.31 Aligned_cols=125 Identities=14% Similarity=0.154 Sum_probs=101.7
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH------
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------ 155 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~------ 155 (230)
+.+.++..+++++...|. ...++..+|.+|..+|++++|+.+|+++++..+.......
T Consensus 284 ~~~~A~~~l~~aL~~~P~----------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 284 QGGKAIPELQQAVRANPK----------------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 556677777777776654 3457889999999999999999999999997765332110
Q ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 156 --EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 156 --~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.......+|.++...|++++|+..|++++++. |....++..+|.++...|++++|+.+|++++++.+
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 12234566889999999999999999999985 67788999999999999999999999999998754
No 46
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.07 E-value=3.3e-09 Score=94.09 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=100.4
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
+.+++...+...+...|. ...+...++.++.+.+++++|+..+++++...+. ...+++
T Consensus 101 ~~~ea~~~l~~~~~~~Pd----------------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~------~~~~~~ 158 (694)
T PRK15179 101 RSDEGLAVWRGIHQRFPD----------------SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS------SAREIL 158 (694)
T ss_pred CcHHHHHHHHHHHhhCCC----------------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC------CHHHHH
Confidence 556666667777777766 5667888899999999999999999999985444 888899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+|.++.+.|+|++|++.|++++.-. |+.+.++.++|.++...|+.++|...|++|++...
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998732 67789999999999999999999999999988653
No 47
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.07 E-value=6.9e-10 Score=69.51 Aligned_cols=65 Identities=28% Similarity=0.437 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQIS 187 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~Ai~~~~~al~~~ 187 (230)
+..+..+|.+++..|++++|+.+|.+++++.+. ...+++++|.++..+| ++++|+.++++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 457889999999999999999999999997655 7889999999999999 7999999999999874
No 48
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.7e-09 Score=86.56 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC---C------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK---D------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---~------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
.+...-..|+.|++.|+|..|...|++++....... + ......++.|++.++.++++|.+|+.++.++|.+
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 344455789999999999999999999998776321 1 1113456999999999999999999999999998
Q ss_pred HHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 187 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
. +.+..+++..|.++..+|+|+.|+..|++++++-+.
T Consensus 287 ~------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 287 D------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred C------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 6 888999999999999999999999999999987654
No 49
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.03 E-value=5.7e-09 Score=93.03 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
...++..+|.++..+|++++|+.++++++++.+. ...++.++|.++...|++++|+..|++++... |.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~------P~ 350 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD------LPYVRAMYARALRQVGQYTAASDEFVQLAREK------GV 350 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cc
Confidence 4557888999999999999999999999996554 56778899999999999999999999998874 55
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
....+..+|.++...|++++|+..|+++++..+
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 566777789999999999999999999998754
No 50
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.02 E-value=6e-09 Score=83.43 Aligned_cols=136 Identities=24% Similarity=0.280 Sum_probs=119.8
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC-C---hHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK-D---PIEEK 157 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-~---~~~~~ 157 (230)
.++..++.+++++.++.. .+|..-+..++..+|..|-...|+++|..+..+|.++..+.+ + .....
T Consensus 137 ~fq~~Lesfe~A~~~A~~----------~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHN----------NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred HHHHHHHHHHHHHHHhhc----------cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 567777778888777766 466667777899999999999999999999999999999876 2 22356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.+++.++..++.+|+...|.++++++.++....+|.+..+.+..-+|++|...|+.+.|..-|++|....
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999999999998754
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=1.5e-09 Score=92.50 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
...+++.+|.+|.++++++.|..+|++|+++.+. .......+|.++.+.|+.++|+.+|++|+.+. +.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~------nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld------~k 555 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS------NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD------PK 555 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc------chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC------CC
Confidence 6678999999999999999999999999996555 77788899999999999999999999998775 55
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.+-+.+..|.++..+++|++|...+++.-++.
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 55666667777777777777777666655443
No 52
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.01 E-value=2.7e-08 Score=83.24 Aligned_cols=106 Identities=18% Similarity=0.180 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
....+..+|.+|...|++++|...|.++++. .+....++..++.++...|++++|++.++++++.... .....
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 178 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-SLRVE 178 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-cchHH
Confidence 3456778888888888888888888888763 2235567888888888888888888888887765311 00112
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
....+..+|.++...|++++|+.+|+++++..+
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 211 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAADP 211 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence 344677888888999999999999999887654
No 53
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.00 E-value=1.6e-09 Score=66.95 Aligned_cols=62 Identities=23% Similarity=0.360 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
.+|..+...|+|++|++.|+++++.. |....+++.+|.++..+|++++|+.+|+++++..++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD------PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 56778888888888888888887764 778888888888888888888888888888877654
No 54
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.98 E-value=6.2e-08 Score=81.04 Aligned_cols=94 Identities=24% Similarity=0.286 Sum_probs=46.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 026948 121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 200 (230)
Q Consensus 121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 200 (230)
..+|..+...|++++|+.+++++++..+. ...++..+|.++...|++++|++++++++... +.....++
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~ 252 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQ------CVRASILLGDLALAQGDYAAAIEALERVEEQD-----PEYLSEVL 252 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----hhhHHHHH
Confidence 34555555555555555555555553222 23344555555555555555555555554432 11122334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 201 GAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 201 ~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
..++.+|...|++++|...++++++
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555555555554444
No 55
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.96 E-value=2e-08 Score=91.73 Aligned_cols=62 Identities=27% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
++..+|.++...|++++|++.+++++... |....++..+|.++...|++++|...|++++..
T Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 222 (899)
T TIGR02917 161 AKLGLAQLALAENRFDEARALIDEVLTAD------PGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222 (899)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 34444444444444444444444444332 334445555555555555555555555555544
No 56
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.96 E-value=1e-08 Score=84.90 Aligned_cols=114 Identities=12% Similarity=0.179 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948 70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 149 (230)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 149 (230)
+..++.......+++.++..|.+++...+. ...+++.+|.+|...|++++|+..+.+++.+.+.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----------------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPN----------------NAELYADRAQANIKLGNFTEAVADANKAIELDPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 445566666667888899999999988776 4557889999999999999999999999997655
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC
Q 026948 150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 211 (230)
Q Consensus 150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 211 (230)
...+++.+|.++...|+|++|+.+|++++.+. |........++.|...+.
T Consensus 69 ------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~------P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 69 ------LAKAYLRKGTACMKLEEYQTAKAALEKGASLA------PGDSRFTKLIKECDEKIA 118 (356)
T ss_pred ------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999986 777788888888876663
No 57
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.94 E-value=2.1e-08 Score=77.82 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=91.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 199 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 199 (230)
.++.|.-++..|+|..|...|...++-+ ++....+.++++||.+++.+|+|++|...|..+++ ..++.+.-+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y---P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY---PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHH
Confidence 7889999999999999999999988844 44555788999999999999999999999999765 45666777899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 200 YGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
++.+|.+...+|+.++|...|++.++.++
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999998775
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=5.4e-09 Score=84.82 Aligned_cols=135 Identities=21% Similarity=0.251 Sum_probs=110.1
Q ss_pred HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948 81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 160 (230)
..-..++..+++++...|.-..... .--.......+-..|.-.+..|+|.+|.+.|..++.+.+. +....+..|
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~----~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--n~~~naklY 290 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKS----ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--NKKTNAKLY 290 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHh----HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--ccchhHHHH
Confidence 3456677788888887775100000 0111224455667899999999999999999999999888 666688899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.|.+.+..+.|+.++|+..++.++++. +....++...|.|+..++++++|.++|+++++.-
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~Al~iD------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEALKID------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhhhhcC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999996 7789999999999999999999999999998754
No 59
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.93 E-value=2e-08 Score=95.02 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=97.4
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH------
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE------ 155 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~------ 155 (230)
+.+.++..|++++...|. ...++..+|.++...|++++|+.+|++++++.+.......
T Consensus 366 ~~~eA~~~~~~Al~~~P~----------------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 366 NLAQAERLYQQARQVDNT----------------DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred CHHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 445566666666666554 3457888999999999999999999999986554211000
Q ss_pred ------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 026948 156 ------------------------------EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 205 (230)
Q Consensus 156 ------------------------------~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 205 (230)
....+..+|.++...|++++|++.|++++++. |..+.+++.+|.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~------P~~~~~~~~LA~ 503 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD------PGSVWLTYRLAQ 503 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Confidence 01223456778888999999999999999886 777889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhh
Q 026948 206 CYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 206 ~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
+|...|++++|+..++++++..+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999987654
No 60
>PRK15331 chaperone protein SicA; Provisional
Probab=98.93 E-value=1.6e-08 Score=72.92 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=87.7
Q ss_pred CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 026948 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190 (230)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~ 190 (230)
+-+.......+..|..++..|++++|...|+-...+.. ...+...+||.++..+++|++|++.|-.|..+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDF------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 44455677888999999999999999999986665322 256678999999999999999999999998875
Q ss_pred CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 191 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
+.++...+..|.||..+|+.++|+.+|+.+++.
T Consensus 102 ---~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 102 ---KNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ---cCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 344556888999999999999999999999874
No 61
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.93 E-value=2.8e-08 Score=91.54 Aligned_cols=95 Identities=12% Similarity=0.133 Sum_probs=81.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 026948 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 201 (230)
Q Consensus 122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 201 (230)
.++......|++++|+..|++++++.+ . ..++.++|.++.+.|++++|+..|++++.+. |..+.++.
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P------~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------Pd~~~a~~ 647 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAP------S-ANAYVARATIYRQRHNVPAAVSDLRAALELE------PNNSNYQA 647 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHH
Confidence 344555566999999999999988543 2 4678999999999999999999999999986 88889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 202 AIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 202 ~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
++|.++...|++++|+..|+++++..+.
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999987653
No 62
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.93 E-value=3.6e-08 Score=76.85 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
.+..++.+|..++..|++++|+..+++++...+. .+....+++.+|.++...|++++|+..|+++++... +.+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~ 105 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---NHPD 105 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCc
Confidence 4557889999999999999999999999885543 334557889999999999999999999999987752 3344
Q ss_pred HHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhhc
Q 026948 196 STEAYGAIADCYTEL--------GDLERAARFYDKYISRLES 229 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~--------g~~~~A~~~~~~al~~~~~ 229 (230)
...+++.+|.++... |++++|+..|++++...+.
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 456899999999887 8999999999999886653
No 63
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.90 E-value=2.6e-08 Score=90.94 Aligned_cols=98 Identities=15% Similarity=0.236 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 196 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 196 (230)
..+++.+|.+|...|++++|+..|+++++..+. ...++.++|.++...|+ .+|+.++++++... |..
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~------~~~ 836 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVVLNNLAWLYLELKD-PRALEYAEKALKLA------PNI 836 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC------CCC
Confidence 346677788888888888888888887775433 44556666666666666 66666666666553 444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 197 TEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
+..+..+|.++...|++++|..+|+++++..
T Consensus 837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5566666777777777777777777766644
No 64
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.90 E-value=1.6e-07 Score=65.14 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
+.++.|..+...|+.++|+.+|++++.. ..+......++.++|..+...|++++|+..+++++.- .++++....
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~---gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~ 76 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA---GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAA 76 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHH
Confidence 5788999999999999999999999883 1234446789999999999999999999999998754 234444667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
....++.+....|++++|+..+-.++.
T Consensus 77 l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 77 LRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778899999999999999998877654
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.1e-08 Score=84.79 Aligned_cols=119 Identities=21% Similarity=0.245 Sum_probs=102.1
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
+.+..+..+.++.+..|. +..+++++|.+++-.++|++|+..|++++.+.++ ...++.
T Consensus 375 ~~~~~~~~F~~A~~ldp~----------------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe------~~~~~i 432 (606)
T KOG0547|consen 375 QSEKMWKDFNKAEDLDPE----------------NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE------NAYAYI 432 (606)
T ss_pred ccHHHHHHHHHHHhcCCC----------------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh------hhHHHH
Confidence 344445555555555554 4447899999999999999999999999997666 888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.++...++++.+++++..|+.+.+-. |..+++|...|.++..++++++|.+.|++|+.+-+
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkkF------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKKF------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999999999999999999998876 88899999999999999999999999999998654
No 66
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.89 E-value=5.6e-08 Score=86.41 Aligned_cols=98 Identities=11% Similarity=0.111 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
.+.++..+|.+....|++++|...++.++++++. ...+..+++.++.+.+++++|+..+++++... |.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------p~ 152 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG------SS 152 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC------CC
Confidence 4668899999999999999999999999997766 88999999999999999999999999999986 88
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
.+..++.+|.+..++|+|++|+..|++++.
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 999999999999999999999999999996
No 67
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.89 E-value=1.3e-07 Score=72.73 Aligned_cols=95 Identities=24% Similarity=0.278 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
.+...|......|+|..|+..+.++..+.+. ...++..+|.+|-+.|++++|..-|.+++++. +..+.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~------~~~p~ 169 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPT------DWEAWNLLGAALDQLGRFDEARRAYRQALELA------PNEPS 169 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCC------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhc------cCCch
Confidence 3434677777888888888888888875444 67778888888888888888888888888876 66677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
...|+|..|...||++.|..++..+..
T Consensus 170 ~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 170 IANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788888888888888888887777654
No 68
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.9e-08 Score=81.62 Aligned_cols=100 Identities=15% Similarity=0.241 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 196 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 196 (230)
+......|+.++..|+|..|+.+|.++++.. +..+..|.|.+.||...|++..|+..+++++++. |..
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~------p~~ 425 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD------PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD------PNF 425 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------chH
Confidence 3345567999999999999999999999944 4488999999999999999999999999999995 888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 197 TEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
..+|..-|.++..+.+|++|.+.|+++++.-+
T Consensus 426 ~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 426 IKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999998643
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.1e-08 Score=84.23 Aligned_cols=126 Identities=21% Similarity=0.298 Sum_probs=101.9
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
..++++..|..+-...+.. -.-.+.+|.-|...+++..|..+|.+|+.+++. .+..+.
T Consensus 361 EhdQAmaaY~tAarl~~G~----------------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~------Dplv~~ 418 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLMPGC----------------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS------DPLVLH 418 (611)
T ss_pred hHHHHHHHHHHHHHhccCC----------------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC------cchhhh
Confidence 4566666666666655540 113557899999999999999999999998877 677889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
.+|.+.+..+.|.+|..+|++++...+...... -....+.|||.+|.+++.+++|+.+|+++|...+.
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999996665544322 35567999999999999999999999999987654
No 70
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.84 E-value=1.8e-08 Score=62.17 Aligned_cols=61 Identities=26% Similarity=0.439 Sum_probs=54.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
+.+|..++..|++++|+..|+++++ ..+....+++.+|.++..+|++++|+.+|+++++..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3579999999999999999999999 445589999999999999999999999999999875
No 71
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1.5e-08 Score=83.38 Aligned_cols=108 Identities=22% Similarity=0.231 Sum_probs=95.3
Q ss_pred CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 026948 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190 (230)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~ 190 (230)
..++.++.++.+.|.+-+..|++++|.+.|.+++. +...-..+++++|..+-.+|+.++|+++|-+...+.
T Consensus 484 n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~il--- 554 (840)
T KOG2003|consen 484 NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--- 554 (840)
T ss_pred cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH---
Confidence 34455667788899999999999999999999998 666678899999999999999999999999988876
Q ss_pred CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 026948 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230 (230)
Q Consensus 191 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 230 (230)
...+.+++.++.+|+.+.+..+|++++.++..+.++|
T Consensus 555 ---~nn~evl~qianiye~led~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 555 ---LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND 591 (840)
T ss_pred ---HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence 5678999999999999999999999999998776543
No 72
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.83 E-value=9.3e-08 Score=73.48 Aligned_cols=121 Identities=19% Similarity=0.144 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC
Q 026948 73 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD 152 (230)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~ 152 (230)
++......+++..++..++++....|. +...+..+|.+|.+.|+++.|...|.+++++..+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~----------------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--- 166 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPT----------------DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN--- 166 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCC----------------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC---
Confidence 455555556788888888888888776 5668999999999999999999999999998887
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948 153 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 221 (230)
Q Consensus 153 ~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 221 (230)
.+.+..|+|..+.-.||++.|..++..+.... +....+-.|++.+...+|+++.|...-.
T Consensus 167 ---~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~------~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 167 ---EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP------AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ---CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC------CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77889999999999999999999999986553 5577899999999999999999987543
No 73
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=9.7e-08 Score=70.75 Aligned_cols=106 Identities=23% Similarity=0.275 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
.+..+-.-|+-++..|+|.+|..-|..|+.+++.+.. ......|.|.|.+...++.++.||+.+.++|++. |.
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------pt 166 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELN------PT 166 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC------ch
Confidence 4445567799999999999999999999999887544 4456678899999999999999999999999997 77
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
...++...+.+|.++.+|++|++.|.+.+..-+
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 888999999999999999999999999987643
No 74
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.8e-08 Score=75.56 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCC
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---GKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~---~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
++.-+..+|.+|+.+|+++.|...|.+++++.++ ++..+..+|.+++.+ .+-.++...+++++..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D----- 223 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD------NPEILLGLAEALYYQAGQQMTAKARALLRQALALD----- 223 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-----
Confidence 5567999999999999999999999999998877 677778888887654 45778999999999985
Q ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 193 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
+....+...+|..+.+.|+|.+|...+++.++..+.
T Consensus 224 -~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 224 -PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred -CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 888999999999999999999999999999987654
No 75
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.81 E-value=2.7e-08 Score=79.75 Aligned_cols=101 Identities=24% Similarity=0.340 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
....+...|.++...|+.++|+..|++++++.+. ...+...++.++...|+++++.+.++...+.. +.
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~------~~ 212 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPD------DPDARNALAWLLIDMGDYDEAREALKRLLKAA------PD 212 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------HT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------cC
Confidence 4556778999999999999999999999997776 55566667777777777777666666654443 22
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+..+..+|.+|..+|++++|+.+|++++...+
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhccccccccccccccccccccc
Confidence 334566677777777777777777777776544
No 76
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.80 E-value=2.8e-08 Score=79.59 Aligned_cols=121 Identities=20% Similarity=0.244 Sum_probs=80.4
Q ss_pred HHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026948 79 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK 158 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 158 (230)
..++...++..+++++...|. +..+...++..+...|+++++...+....+..+. .+.
T Consensus 158 ~~G~~~~A~~~~~~al~~~P~----------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~------~~~ 215 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELDPD----------------DPDARNALAWLLIDMGDYDEAREALKRLLKAAPD------DPD 215 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH-TT-----------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT------SCC
T ss_pred HcCCHHHHHHHHHHHHHcCCC----------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC------HHH
Confidence 334678888888999988876 4446778899999999999988887777665433 344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.+..+|.++...|++++|+.+|+++++.. |.++..+..+|.++...|++++|...+++++...
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLN------PDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHS------TT-HHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHhcccccccccccccccccccc------cccccccccccccccccccccccccccccccccc
Confidence 56788999999999999999999998875 7788999999999999999999999999988653
No 77
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.78 E-value=3.8e-07 Score=63.06 Aligned_cols=101 Identities=20% Similarity=0.176 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948 118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 197 (230)
Q Consensus 118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 197 (230)
..+-..|......|+.+.|++.|.+++.+.++ .+.+|+|.+..++-+|+.++|++.+++++++... ....-.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~--~trtac 115 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGD--QTRTAC 115 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc--cchHHH
Confidence 34556788889999999999999999998877 7889999999999999999999999999988622 223345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
.++...|.+|..+|+-+.|...|+.|-++
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 67899999999999999999999988764
No 78
>PLN02789 farnesyltranstransferase
Probab=98.78 E-value=3.1e-07 Score=74.70 Aligned_cols=118 Identities=11% Similarity=0.088 Sum_probs=88.6
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQNVKDPIEEKKAA 160 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 160 (230)
+.+.++..+.+++...|. ...++..+|.++...| ++++++..+.++++..++ ...++
T Consensus 52 ~serAL~lt~~aI~lnP~----------------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk------nyqaW 109 (320)
T PLN02789 52 RSPRALDLTADVIRLNPG----------------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK------NYQIW 109 (320)
T ss_pred CCHHHHHHHHHHHHHCch----------------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc------chHHh
Confidence 556666666667766655 5557778888888877 578888888888875444 56677
Q ss_pred HHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 161 RGLGASLQRQGKY--REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 161 ~~lg~~~~~~~~~--~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
++.+.+....|++ +++++++++++++. +....+|...|.++..+|++++|+++++++++.-
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~d------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLD------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 7777777777764 67788888888775 6778888888888888888888888888888753
No 79
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.77 E-value=2.6e-07 Score=66.40 Aligned_cols=102 Identities=12% Similarity=0.065 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 026948 64 RGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA 143 (230)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 143 (230)
+..++.+-...-.+...++.+.+..-|+....+.+. ...-++++|.++...|+|.+|++.|.++
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~----------------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW----------------SFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455556666666666667777777777777777765 5667899999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 144 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 144 l~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
+.+.++ .++.++++|.+++..|+.+.|.+.|+.++...
T Consensus 96 ~~L~~d------dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 96 AQIKID------APQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HhcCCC------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 997665 78899999999999999999999999999987
No 80
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.8e-07 Score=76.14 Aligned_cols=149 Identities=17% Similarity=0.238 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 026948 65 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAAL 144 (230)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 144 (230)
.........++.+....++..+...|.+++.+..........+.. .-......++++++.+|.++++|..|+.+.+++|
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~-~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQK-KAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHH-HHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 333466777888888889999999999988887642111111100 0111234467799999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Q 026948 145 ELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERA-ARFYDKY 223 (230)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A-~~~~~~a 223 (230)
++.+. +..+++..|.++...++|+.|+..|++++++. |.+..+...+..+..+..++.+. .+.|.+.
T Consensus 285 e~~~~------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~------P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 285 ELDPN------NVKALYRRGQALLALGEYDLARDDFQKALKLE------PSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred hcCCC------chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96555 89999999999999999999999999999996 77778888888887766665544 6777776
Q ss_pred HHh
Q 026948 224 ISR 226 (230)
Q Consensus 224 l~~ 226 (230)
+..
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
No 81
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.75 E-value=2.4e-07 Score=84.24 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
++..+|..+...|++++|+..+++++++.+. ...+...+|.++...|++++|+..++++++.. |....
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~------P~~~~ 118 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRGLILTLADAGQYDEALVKAKQLVSGA------PDKAN 118 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHH
Confidence 3445555555555555555555555554332 33344455555555555555555555555543 44444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
+..+|.++...|++++|+..++++++..
T Consensus 119 -~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 119 -LLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5555555555555555555555555543
No 82
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=4.9e-08 Score=80.92 Aligned_cols=95 Identities=19% Similarity=0.257 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948 115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 194 (230)
Q Consensus 115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 194 (230)
..+..+-..|+-++..|+|++|+.+|++|+++.+. .+..|.|++.+|...|++++-++.+.+++++. |
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~------epiFYsNraAcY~~lgd~~~Vied~TkALEl~------P 180 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD------EPIFYSNRAACYESLGDWEKVIEDCTKALELN------P 180 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC------c
Confidence 34556668999999999999999999999997766 47789999999999999999999999999996 8
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948 195 GSTEAYGAIADCYTELGDLERAARFYD 221 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~ 221 (230)
..+.++++.+.+++.+|++++|.....
T Consensus 181 ~Y~KAl~RRA~A~E~lg~~~eal~D~t 207 (606)
T KOG0547|consen 181 DYVKALLRRASAHEQLGKFDEALFDVT 207 (606)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHhhh
Confidence 899999999999999999999987653
No 83
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.74 E-value=6.7e-08 Score=85.77 Aligned_cols=122 Identities=19% Similarity=0.181 Sum_probs=103.3
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
..+.++..|.+.+...|. ++++-+.+|.++...|++.+|.+.|.+..+-... ....+.
T Consensus 627 ~~~KAlq~y~kvL~~dpk----------------N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~------~~dv~l 684 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRNDPK----------------NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD------FEDVWL 684 (1018)
T ss_pred HHHHHHHHHHHHHhcCcc----------------hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh------CCceee
Confidence 345566677777776666 7788899999999999999999999998884432 567789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
|+|+||..+|+|..|++.|+.+++-.- ......++..||.++...|.+.+|.++..+|+...+.
T Consensus 685 Nlah~~~e~~qy~~AIqmYe~~lkkf~----~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 685 NLAHCYVEQGQYRLAIQMYENCLKKFY----KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999987652 3456789999999999999999999999999987654
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.71 E-value=1.6e-07 Score=77.63 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
.......+|.++..+|++++|+..+++++++.+. ...++..+|.++...|++++|+.++++++..... +...
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~ 184 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSML 184 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--Ccch
Confidence 4556668899999999999999999999997655 4678899999999999999999999999887532 1122
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
....+..+|.++...|++++|+..|++++.
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 345678899999999999999999999863
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.69 E-value=1.6e-06 Score=69.44 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc------------------CCCCCcccccCccHHHHHHHHHH
Q 026948 62 QRRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVG------------------SRIPEDEVIVDPKKEELLSRLKT 123 (230)
Q Consensus 62 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~ 123 (230)
..+.++++..+.+.++....+...++..|..+++..|.. ..+....-.+.-.+.-..+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 345667777777778888788888888888888776651 00111111112222233466788
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIE---------EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 194 (230)
Q Consensus 124 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~---------~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 194 (230)
|.++..+|.+++|...|...+.-.++.+.... ..+.+......+...||+..|+++..+.+++. |
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~------~ 186 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ------P 186 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC------c
Confidence 88888889999998888888875544221111 11223334445566788888888888888886 8
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
+.+..+...+.||...|+..+|+...+.+-++.+
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~ 220 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ 220 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence 8888999999999999999999999988876543
No 86
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.69 E-value=8.2e-07 Score=80.79 Aligned_cols=103 Identities=14% Similarity=0.003 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948 115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 194 (230)
Q Consensus 115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 194 (230)
....+...+|..+...|++++|+..+++++...+. ....+..+|.++...|++++|+..+++++.+. |
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~------n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~------P 424 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG------NQGLRIDYASVLQARGWPRAAENELKKAEVLE------P 424 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------C
Confidence 34556778899999999999999999999986555 56789999999999999999999999999986 7
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
....+++.+|.++...|++++|...++++++..++
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 78889999999999999999999999999987654
No 87
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.69 E-value=1.2e-06 Score=62.05 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948 118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 197 (230)
Q Consensus 118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 197 (230)
..++..|...+..|+|++|+..++.... +....+....+...+|.+|+..++|++|+..+++.+++.. ..+...
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~---ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP---~hp~vd 84 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDT---RYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP---THPNVD 84 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCCCcc
Confidence 3688899999999999999999988665 5555566778899999999999999999999999988864 455667
Q ss_pred HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhhhc
Q 026948 198 EAYGAIADCYTELGD---------------LERAARFYDKYISRLES 229 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~---------------~~~A~~~~~~al~~~~~ 229 (230)
.+++..|.++..+.+ ..+|...|++.++.+++
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 899999999999887 88999999999988764
No 88
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.67 E-value=8.8e-07 Score=67.62 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
....++..|..++..|+|.+|+..|++....++. .+....+...+|.+++..|+|++|+..+++.++.. +..+.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y---P~~~~ 77 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY---PNSPK 77 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----TT-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcc
Confidence 4457889999999999999999999998886554 44467788999999999999999999999987664 45566
Q ss_pred HHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhhhc
Q 026948 196 STEAYGAIADCYTELG-----------DLERAARFYDKYISRLES 229 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g-----------~~~~A~~~~~~al~~~~~ 229 (230)
...+++.+|.++..+. ...+|+..|+..++.+++
T Consensus 78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 7889999999976653 345888899988887764
No 89
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.67 E-value=7.7e-08 Score=79.88 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=56.1
Q ss_pred CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK---KAARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~---~~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
..+.....+++++|..|+..|+|++|+..|+++++ ..+... .+++|+|.+|..+|++++|+.++++|+++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALE------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35667778888888888888888888888888888 344444 35888888888888888888888888876
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=1e-07 Score=75.58 Aligned_cols=124 Identities=12% Similarity=0.126 Sum_probs=73.6
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----------
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV----------- 150 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~----------- 150 (230)
+.+.++..+...++..|. ++..+..++.++..++++++|+++|+.+++..+..
T Consensus 271 QP~~AL~~~~~gld~fP~----------------~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y 334 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPF----------------DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGY 334 (478)
T ss_pred cHHHHHHHHhhhhhcCCc----------------hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence 556666677777776665 56566677888888888888888888877754330
Q ss_pred --CChHH---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCH
Q 026948 151 --KDPIE---------------EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL 213 (230)
Q Consensus 151 --~~~~~---------------~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 213 (230)
++.+. .+..+.|+|.|++--++++-++..|++|+....+ +..-+++|+|+|.+.-..||+
T Consensus 335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~ 411 (478)
T KOG1129|consen 335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDF 411 (478)
T ss_pred ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccch
Confidence 11111 2334555566666566666666666665554421 122345566666666666666
Q ss_pred HHHHHHHHHHH
Q 026948 214 ERAARFYDKYI 224 (230)
Q Consensus 214 ~~A~~~~~~al 224 (230)
..|..+|+-++
T Consensus 412 nlA~rcfrlaL 422 (478)
T KOG1129|consen 412 NLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHHHHh
Confidence 66666655554
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=2.2e-07 Score=78.45 Aligned_cols=118 Identities=16% Similarity=0.237 Sum_probs=96.7
Q ss_pred HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948 81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 160 (230)
..++.+++.|+.++..-|. +...++.+|-.+....+..+|+..|++|+++-+. ..++.
T Consensus 444 ~efdraiDcf~~AL~v~Pn----------------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~------yVR~R 501 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPN----------------DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG------YVRVR 501 (579)
T ss_pred hHHHHHHHHHHHHHhcCCc----------------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC------eeeee
Confidence 3667778888888877666 6668999999999999999999999999997666 89999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc----HHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948 161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG----STEAYGAIADCYTELGDLERAARFY 220 (230)
Q Consensus 161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~----~~~~~~~lg~~y~~~g~~~~A~~~~ 220 (230)
+|||..+..+|.|++|+++|..||.+.++...... ...+|-.|-.+...+++.|.+...+
T Consensus 502 yNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 502 YNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 99999999999999999999999999887433222 2356777777888888888665544
No 92
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.60 E-value=1.7e-06 Score=64.27 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=64.3
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
+.....+.+++++|..+...|++++|+.+|++++..... .+....++.++|.++...|++++|+.+|++++++.+
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 455667888999999999999999999999999987532 223467899999999999999999999999998654
No 93
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.59 E-value=2.3e-07 Score=58.53 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=41.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 164 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 164 g~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
..++...++|++|++++++++.+. |..+..+...|.++..+|++++|...++++++..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD------PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 356667777777777777777764 55666777777777777777777777777776554
No 94
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.59 E-value=3.3e-06 Score=66.18 Aligned_cols=105 Identities=11% Similarity=0.010 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
..+..|..++..|+|++|+..|++.+...+ +.+....+...+|.++++.++|++|+.++++.++.. ++.+....
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~---P~~~~~~~ 107 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHPNIDY 107 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---cCCCchHH
Confidence 577889999999999999999999888554 445667778999999999999999999999988775 45667788
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHhhhc
Q 026948 199 AYGAIADCYTELG---------------D---LERAARFYDKYISRLES 229 (230)
Q Consensus 199 ~~~~lg~~y~~~g---------------~---~~~A~~~~~~al~~~~~ 229 (230)
+++.+|.++..++ | ..+|+..+++.++.+++
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~ 156 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN 156 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC
Confidence 9999999976554 1 25677888888887754
No 95
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.9e-06 Score=65.39 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
.+..-|+.|...++++.|-..|.++-++..+.+...+.+..|...+++|.+. ++.+|+.++++++++....+...--+.
T Consensus 36 l~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk 114 (288)
T KOG1586|consen 36 LYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAK 114 (288)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 4446778888889999999999999999999888888888888888887655 999999999999999987776666666
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhhhc
Q 026948 199 AYGAIADCYTEL-GDLERAARFYDKYISRLES 229 (230)
Q Consensus 199 ~~~~lg~~y~~~-g~~~~A~~~~~~al~~~~~ 229 (230)
-+..+|.+|+.- .++++|+.+|+++-+++..
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 788999999865 9999999999999988753
No 96
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.59 E-value=2.2e-07 Score=74.20 Aligned_cols=96 Identities=11% Similarity=0.156 Sum_probs=86.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 199 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 199 (230)
.-..|+.|+.+|.|++|+++|.+++.+++. ++..+.|.+.+|++++.|..|...+..|+.+. .....+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------~~Y~KA 167 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPH------NPVYHINRALAYLKQKSFAQAEEDCEAAIALD------KLYVKA 167 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCC------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh------HHHHHH
Confidence 346899999999999999999999996654 66778899999999999999999999999997 567889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 200 YGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
|...|.+...+|+..+|.+.|+.+|++=
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 9999999999999999999999998753
No 97
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.59 E-value=4.9e-07 Score=64.13 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHH
Q 026948 139 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 218 (230)
Q Consensus 139 ~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 218 (230)
.+++++.. .+....+...+|..+...|++++|++.+++++... |....++.++|.++...|++++|..
T Consensus 5 ~~~~~l~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~~~~~~A~~ 72 (135)
T TIGR02552 5 TLKDLLGL------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD------PYNSRYWLGLAACCQMLKEYEEAID 72 (135)
T ss_pred hHHHHHcC------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566663 33366788999999999999999999999998875 7788999999999999999999999
Q ss_pred HHHHHHHhhh
Q 026948 219 FYDKYISRLE 228 (230)
Q Consensus 219 ~~~~al~~~~ 228 (230)
++++++...+
T Consensus 73 ~~~~~~~~~p 82 (135)
T TIGR02552 73 AYALAAALDP 82 (135)
T ss_pred HHHHHHhcCC
Confidence 9999988654
No 98
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.59 E-value=5.3e-07 Score=58.63 Aligned_cols=80 Identities=21% Similarity=0.276 Sum_probs=60.1
Q ss_pred HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948 83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 162 (230)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 162 (230)
.+.++..+.+.+...+. +. +...++.+|.+|+..|+|++|+..+++ .+..+. ...+.+.
T Consensus 5 y~~Ai~~~~k~~~~~~~-------------~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~------~~~~~~l 63 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPT-------------NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS------NPDIHYL 63 (84)
T ss_dssp HHHHHHHHHHHHHHHCG-------------TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC------HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-------------Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC------CHHHHHH
Confidence 44555666666665552 11 344677799999999999999999998 554443 5677778
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 026948 163 LGASLQRQGKYREAIKYHSMV 183 (230)
Q Consensus 163 lg~~~~~~~~~~~Ai~~~~~a 183 (230)
+|.++..+|+|++|++.++++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 899999999999999999875
No 99
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=5.3e-06 Score=65.90 Aligned_cols=101 Identities=20% Similarity=0.256 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
.+..+..++..+....+.++|...+.+|++..++ -.++-.-+|.+....|+|+.|++.++.+++-+ +..
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-----~~y 247 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQADKK------CVRASIILGRVELAKGDYQKAVEALERVLEQN-----PEY 247 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc------ceehhhhhhHHHHhccchHHHHHHHHHHHHhC-----hHH
Confidence 4445557888888889999999999999996555 77888889999999999999999999987764 356
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.+.+...+..||.++|+.++......++.+.+
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 77888899999999999999999998887754
No 100
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.58 E-value=9.3e-07 Score=80.20 Aligned_cols=100 Identities=7% Similarity=0.066 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 196 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 196 (230)
......+|.++..+|++++|++.|+++++..+. ...++..++..+...+++++|++.++++.... +..
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d------p~~ 169 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPT------NPDLISGMIMTQADAGRGGVVLKQATELAERD------PTV 169 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC------cch
Confidence 445666688999999999999999999986554 45666788889999999999999999987664 332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 197 TEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
..+..++.++...+++.+|++.|+++++..+.
T Consensus 170 -~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 170 -QNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred -HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 22344566666677887799999999987654
No 101
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.58 E-value=5.7e-06 Score=69.99 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
.....|..+..+|+++.|..++.++.+..+. .. .......+.++...|++++|...+++.++.. |..+.
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~---~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~------P~~~~ 188 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELAGN---DN--ILVEIARTRILLAQNELHAARHGVDKLLEMA------PRHKE 188 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---Cc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHH
Confidence 4567789999999999999999999874433 11 1223345888999999999999999998875 77788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
++..++.++...|++++|.+.+++..+.
T Consensus 189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 189 VLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 9999999999999999999999888764
No 102
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=6.6e-07 Score=71.09 Aligned_cols=109 Identities=18% Similarity=0.273 Sum_probs=98.7
Q ss_pred CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 026948 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190 (230)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~ 190 (230)
+.+...+..+-.-|+-|+..++|..|+..|.++++ .++.|+...+..|.|.+.+....|+|..|+..+.+++.+.
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~--- 149 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK--- 149 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 45555666677899999999999999999999998 6788999999999999999999999999999999999986
Q ss_pred CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 191 GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 191 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
|....+++.=+.|..++++++.|..+.+..+.+.
T Consensus 150 ---P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 150 ---PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred ---cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 8889999999999999999999999998887654
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=6.3e-07 Score=68.08 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH-H
Q 026948 130 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY-T 208 (230)
Q Consensus 130 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y-~ 208 (230)
.++.++++..++++++..+. ....+..+|.++...|++++|+..|++++++. |..+..+.++|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~------P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWRNDYDNALLAYRQALQLR------GENAELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Confidence 46678888999999995554 78899999999999999999999999999996 88899999999974 7
Q ss_pred HcCC--HHHHHHHHHHHHHhhhc
Q 026948 209 ELGD--LERAARFYDKYISRLES 229 (230)
Q Consensus 209 ~~g~--~~~A~~~~~~al~~~~~ 229 (230)
..|+ +++|...++++++.-++
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~ 142 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDAN 142 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCC
Confidence 7787 59999999999986543
No 104
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.54 E-value=2.4e-06 Score=75.66 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 026948 64 RGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA 143 (230)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 143 (230)
..++..+..+.+.+...++.+.+..-+...+...|. ...++..+|.+|.++|+..++......|
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~----------------~~~ay~tL~~IyEqrGd~eK~l~~~llA 199 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR----------------NPIAYYTLGEIYEQRGDIEKALNFWLLA 199 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc----------------chhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 344667777888888888888888888888887776 5568999999999999999999998877
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 144 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 223 (230)
Q Consensus 144 l~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 223 (230)
-.+.++ ....+..++....++|++++|.-||.+||+.. |......+..+..|.++|++..|...|.+.
T Consensus 200 AHL~p~------d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l 267 (895)
T KOG2076|consen 200 AHLNPK------DYELWKRLADLSEQLGNINQARYCYSRAIQAN------PSNWELIYERSSLYQKTGDLKRAMETFLQL 267 (895)
T ss_pred HhcCCC------ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 775544 33667788889999999999999999999986 767888999999999999999999999999
Q ss_pred HHhhh
Q 026948 224 ISRLE 228 (230)
Q Consensus 224 l~~~~ 228 (230)
+...+
T Consensus 268 ~~~~p 272 (895)
T KOG2076|consen 268 LQLDP 272 (895)
T ss_pred HhhCC
Confidence 88654
No 105
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.54 E-value=1.3e-05 Score=62.95 Aligned_cols=140 Identities=13% Similarity=0.049 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948 70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 149 (230)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 149 (230)
+-.........++.+.++..|.+.+...|. . .....+.+++|.+|+..+++++|+.++++.++..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-----------s--~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-----------G--PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------C--hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 334455555556777888888888887775 2 223345789999999999999999999999997776
Q ss_pred cCChHHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHhCCcccHHH-------------
Q 026948 150 VKDPIEEKKAARGLGASLQRQG---------------K---YREAIKYHSMVLQISEREGEYSGSTE------------- 198 (230)
Q Consensus 150 ~~~~~~~~~~~~~lg~~~~~~~---------------~---~~~Ai~~~~~al~~~~~~~~~~~~~~------------- 198 (230)
.+ ....+++.+|.++...+ | -.+|+..|++.++... +++...+
T Consensus 102 ~~---~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP---~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 102 HP---NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP---NSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CC---chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc---CChhHHHHHHHHHHHHHHHH
Confidence 43 35677888887764443 2 2467778888766543 3332222
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 199 -AYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 199 -~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
--..+|.-|.+.|+|..|+.-++.+++-++
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp 206 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYP 206 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCC
Confidence 233478889999999999999999988664
No 106
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.53 E-value=1.1e-06 Score=65.00 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 210 (230)
Q Consensus 131 g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 210 (230)
++|..+.+.+.+.++ .........+++++|.++...|++++|+..|++++.+.. +++..+.++.++|.++...
T Consensus 13 ~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 13 KTFTIVADILLRILP----TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred cccccchhhhhHhcc----CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHc
Confidence 445555555544332 224444778899999999999999999999999998742 2233567999999999999
Q ss_pred CCHHHHHHHHHHHHHhhh
Q 026948 211 GDLERAARFYDKYISRLE 228 (230)
Q Consensus 211 g~~~~A~~~~~~al~~~~ 228 (230)
|++++|+.+|++++.+.+
T Consensus 86 g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 86 GEHTKALEYYFQALERNP 103 (168)
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999998643
No 107
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.5e-07 Score=76.01 Aligned_cols=97 Identities=20% Similarity=0.263 Sum_probs=87.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 199 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 199 (230)
.-..|+..+..|+|+.|+.+|.+++.+.+. +...|.|...+|..+|+|++|+..-.+.+++. |..+..
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~------p~w~kg 72 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPT------NHVLYSNRSAAYASLGSYEKALKDATKTRRLN------PDWAKG 72 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCC------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC------CchhhH
Confidence 345688899999999999999999997655 56678889999999999999999999999996 889999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 200 YGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
|..+|.+...+|+|++|+..|.+.|+.-+
T Consensus 73 y~r~Gaa~~~lg~~~eA~~ay~~GL~~d~ 101 (539)
T KOG0548|consen 73 YSRKGAALFGLGDYEEAILAYSEGLEKDP 101 (539)
T ss_pred HHHhHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999998643
No 108
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.51 E-value=4.1e-06 Score=69.74 Aligned_cols=91 Identities=20% Similarity=0.291 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
....++.++...++-.+|+...+++++..+. ....+...+..+...++|+.|++..++++.+. |....
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls------P~~f~ 269 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQ------DSELLNLQAEFLLSKKKYELALEIAKKAVELS------PSEFE 269 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------chhHH
Confidence 4556889999999999999999999974433 47778888999999999999999999999996 88999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 026948 199 AYGAIADCYTELGDLERAARFYD 221 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~ 221 (230)
+|+.|+.+|..+|++++|+...+
T Consensus 270 ~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 270 TWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999997665
No 109
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=9.4e-06 Score=64.51 Aligned_cols=101 Identities=13% Similarity=0.091 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
++-.+-.+|....++++|++...+..++.+. ......+..|+.++..+....+.+.|+..+.+|++.+ +....
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~------~~cvR 215 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD------KKCVR 215 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC------cccee
Confidence 5667788888888888888888777765443 2445578889999999999999999999999999886 66778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
+-..+|+++...|+|++|++.++.+++-
T Consensus 216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 216 ASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred hhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 8889999999999999999999998763
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.49 E-value=2e-06 Score=71.12 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=88.6
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
+.+.++..+.+.+...|. ...++.. +..+...|++..+.....+++.. ..+..+....+..
T Consensus 58 ~~~~A~~~~~~~l~~~P~----------------~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~ 118 (355)
T cd05804 58 DLPKALALLEQLLDDYPR----------------DLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLG 118 (355)
T ss_pred CHHHHHHHHHHHHHHCCC----------------cHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHH
Confidence 445566666666666554 1122222 55555556555555555555543 2234455667788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+|.++...|++++|+..+++++++. |....++..+|.++...|++++|+.++++++...+
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 89999999999999999999999986 66678899999999999999999999999988653
No 111
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=5.2e-06 Score=61.76 Aligned_cols=125 Identities=17% Similarity=0.206 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 026948 64 RGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAA 143 (230)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 143 (230)
..+.+++...++.+...+.++.+...|..++...|. -....+...+.+.|.+...++.++.|++...++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~-----------~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPS-----------TSTEERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcc-----------ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 455668888899999989999999999999999987 344556667779999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC
Q 026948 144 LELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 211 (230)
Q Consensus 144 l~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 211 (230)
+++.+. ...++...+.+|-....|++|++.|++.+... |..-.+...+.++--...
T Consensus 161 iel~pt------y~kAl~RRAeayek~ek~eealeDyKki~E~d------Ps~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 161 IELNPT------YEKALERRAEAYEKMEKYEEALEDYKKILESD------PSRREAREAIARLPPKIN 216 (271)
T ss_pred HhcCch------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC------cchHHHHHHHHhcCHHHH
Confidence 997655 66778888999999999999999999998875 555555555554443333
No 112
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=2e-05 Score=59.96 Aligned_cols=109 Identities=13% Similarity=0.180 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCCcc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ-GKYREAIKYHSMVLQISEREGEYS 194 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~Ai~~~~~al~~~~~~~~~~ 194 (230)
-+.++...+.+| +.++..+|+++++++++++-..+.-...+..+..+|.+|-.- .++++||.+|+++-+.........
T Consensus 73 aat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 73 AATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 333444445554 556999999999999999998887777788888999998765 999999999999999887665555
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 195 GSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
.-..++...+..-..+++|.+|+..|++...
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788888888999999999999998765
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=1.1e-05 Score=74.75 Aligned_cols=113 Identities=14% Similarity=0.046 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc--
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY-- 193 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-- 193 (230)
...+...+|..+...|++++|...+.+++......++......++.++|.++...|++++|..++++++.+.......
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 569 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL 569 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 444667889999999999999999999999998877777777889999999999999999999999999988765432
Q ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 194 SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 194 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
+.....+..+|.++...|++++|...+++++....
T Consensus 570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 22344577889999999999999999999987643
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.47 E-value=2.5e-06 Score=77.23 Aligned_cols=121 Identities=16% Similarity=0.125 Sum_probs=93.2
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh------------
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN------------ 149 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~------------ 149 (230)
+.+.++......+...|. ....++.+|.++++.++++++... .++...+.
T Consensus 46 ~~deai~i~~~~l~~~P~----------------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 46 LTDEAKDICEEHLKEHKK----------------SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred CHHHHHHHHHHHHHhCCc----------------ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence 455555555556665555 445677788888888887777654 44443332
Q ss_pred -cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 150 -VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 150 -~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.++......+++.+|.||-+.|++++|...|++++++. |..+.+++++|..|... +.++|..++.+|+..+
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 12333455799999999999999999999999999996 88899999999999999 9999999999999865
No 115
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.45 E-value=3.8e-07 Score=56.64 Aligned_cols=55 Identities=27% Similarity=0.463 Sum_probs=35.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 168 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 168 ~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
...|+|++|++.|++++... |....++..+|.+|...|++++|...+++++...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35567777777777776664 55666667777777777777777777666655443
No 116
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.45 E-value=7.6e-06 Score=60.23 Aligned_cols=124 Identities=14% Similarity=0.142 Sum_probs=94.9
Q ss_pred HHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026948 79 AALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK 158 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 158 (230)
..+..+.......+.++.+|. ..-.+.+|......|++.+|...|++++. +.......
T Consensus 68 q~ldP~R~~Rea~~~~~~ApT-----------------vqnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a 125 (251)
T COG4700 68 QKLDPERHLREATEELAIAPT-----------------VQNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAA 125 (251)
T ss_pred HhcChhHHHHHHHHHHhhchh-----------------HHHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHH
Confidence 334445555555556666653 33566889999999999999999999987 22333456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+.++++..+..+++..|...+++..+.... -..++....+|.++..+|.+.+|...|+.+++.++
T Consensus 126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa----~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA----FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhcCCc----cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 6788999999999999999999997766421 23456788899999999999999999999998765
No 117
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=8.9e-07 Score=73.24 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=88.7
Q ss_pred cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
+..-..+++++|..+-.+|+.++|+++|.+.-.+..+ .+..++.++.+|-...+..+||+++-++..+.
T Consensus 520 dasc~ealfniglt~e~~~~ldeald~f~klh~il~n------n~evl~qianiye~led~aqaie~~~q~~sli----- 588 (840)
T KOG2003|consen 520 DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN------NAEVLVQIANIYELLEDPAQAIELLMQANSLI----- 588 (840)
T ss_pred chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-----
Confidence 3334557889999999999999999999988877666 78899999999999999999999999998775
Q ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 193 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
|..+..+..+|..|.+.|+..+|..++-....+++
T Consensus 589 -p~dp~ilskl~dlydqegdksqafq~~ydsyryfp 623 (840)
T KOG2003|consen 589 -PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP 623 (840)
T ss_pred -CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC
Confidence 77788999999999999998888887765555443
No 118
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.43 E-value=7.7e-07 Score=55.26 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=54.1
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 026948 128 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 205 (230)
Q Consensus 128 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 205 (230)
+..|++++|+..|++++...+. ...+...+|.++...|++++|...+++++... |..+..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~------~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERLLKQD------PDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG------TTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCHHHHHHHHhc
Confidence 5689999999999999997665 77888999999999999999999999987765 555555555543
No 119
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.43 E-value=0.00013 Score=54.17 Aligned_cols=102 Identities=25% Similarity=0.194 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
-..+.+.++..+...+++++|+..++.++.. ..|.....-+-..++.+...+|.+++|+..+...- ++..
T Consensus 88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------~~~w 157 (207)
T COG2976 88 AVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-------EESW 157 (207)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-------cccH
Confidence 3446678999999999999999999988862 23445566778889999999999999999887632 2233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.+..-...|+++...|+.++|+..|++++...
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44556667999999999999999999999874
No 120
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=6.6e-06 Score=67.02 Aligned_cols=118 Identities=12% Similarity=0.048 Sum_probs=94.1
Q ss_pred HHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 84 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDL--EKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~--~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
+.++..+.+.+...++ ...+++.++.+....|+. ++++.++.+++++.++ ...++.
T Consensus 89 ~eeL~~~~~~i~~npk----------------nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk------Ny~AW~ 146 (320)
T PLN02789 89 EEELDFAEDVAEDNPK----------------NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK------NYHAWS 146 (320)
T ss_pred HHHHHHHHHHHHHCCc----------------chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc------cHHHHH
Confidence 4555555556655554 455788899888888874 7788999999986555 888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhhhc
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL---GDL----ERAARFYDKYISRLES 229 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---g~~----~~A~~~~~~al~~~~~ 229 (230)
+.|.+....|+|++|++++.++|+.. +....+|+..|.+.... |.+ ++++.+..+++...+.
T Consensus 147 ~R~w~l~~l~~~~eeL~~~~~~I~~d------~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~ 215 (320)
T PLN02789 147 HRQWVLRTLGGWEDELEYCHQLLEED------VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR 215 (320)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHC------CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999986 77889999999998776 333 5788888899886653
No 121
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=4.6e-07 Score=71.98 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
.+.++|.+.+..+++|-++..|++++..+.. +...+..++|+|.+....||+.-|..+|+-++..+ +....
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d------~~h~e 430 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD------AQHGE 430 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccchHHHHHHHHHHhccC------cchHH
Confidence 3557889999999999999999999986643 23367889999999999999999999999998764 78899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
+++|+|..-...|+.++|..+++-|-...+
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 999999999999999999999998876543
No 122
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.42 E-value=2.8e-05 Score=62.85 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948 115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 194 (230)
Q Consensus 115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 194 (230)
....+++.++..+..+|..-.|.++.+++.+++-..+|....+++...+|++|+..|+.+.|..-|++|.......+|..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrm 283 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRM 283 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhH
Confidence 45668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHhhh
Q 026948 195 GSTEAYGAIADCYTELGDLER-----AARFYDKYISRLE 228 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~-----A~~~~~~al~~~~ 228 (230)
....++-..+.+.....-..+ |++.-++.+++.+
T Consensus 284 gqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 284 GQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 999999999999887766666 8888888888764
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=6.3e-06 Score=68.68 Aligned_cols=98 Identities=22% Similarity=0.243 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
+...+...+.++...++.++|.+.+++++.+.+. ......++|+.+...|++++|+..++..+.-. |.
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~------~~~l~~~~a~all~~g~~~eai~~L~~~~~~~------p~ 406 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALALDPN------SPLLQLNLAQALLKGGKPQEAIRILNRYLFND------PE 406 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC------CC
Confidence 4555667899999999999999999999996655 56778899999999999999999999876553 77
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
++..|..++.+|..+|+-.+|...+-.++.
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 888999999999999888877776655544
No 124
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.41 E-value=4.7e-06 Score=72.15 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+.++..+|..+...|++++|...+++|+.+. + ...+|..+|.++...|++++|++.|++|+.+-+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE------M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 35778888999999999999999999999985 5 368999999999999999999999999998654
No 125
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.40 E-value=2.1e-06 Score=54.04 Aligned_cols=58 Identities=26% Similarity=0.388 Sum_probs=53.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 124 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
..+|...+++++|+.++++++.+.+. ....+...|.++...|++++|++.|+++++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 56789999999999999999997655 78889999999999999999999999999885
No 126
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.40 E-value=1.8e-05 Score=60.40 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948 68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 147 (230)
Q Consensus 68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~ 147 (230)
+.+-..+......++...++..|.+.....|. .+. ...+.+.+|..++..|++++|+..+++.++..
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-----------s~~--a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPN-----------SPY--APQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-----------STT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-----------ChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34556667777777888888888888888775 222 23468899999999999999999999999977
Q ss_pred HhcCChHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhCCcccHH--------------HHHHH
Q 026948 148 QNVKDPIEEKKAARGLGASLQRQ-----------GKYREAIKYHSMVLQISEREGEYSGST--------------EAYGA 202 (230)
Q Consensus 148 ~~~~~~~~~~~~~~~lg~~~~~~-----------~~~~~Ai~~~~~al~~~~~~~~~~~~~--------------~~~~~ 202 (230)
+... ....+++.+|.++... +...+|+..|+..++... +++... .--..
T Consensus 73 P~~~---~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP---~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 73 PNSP---KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP---NSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp TT-T---THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T---TSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCc---chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc---CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7643 3567788888876554 334578888888776543 333222 22344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 203 IADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 203 lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
+|..|...|+|..|+..++.+++.++.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~ 173 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPD 173 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 799999999999999999999987653
No 127
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.40 E-value=2.3e-05 Score=54.34 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948 69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 148 (230)
Q Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 148 (230)
.+.-++..+.+.++...+++.|.+++...|. .+.++++.+..+.-+|+.++|++.++++++++.
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~----------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPE----------------RASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhccc----------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 3444555566666788899999999999987 677899999999999999999999999999876
Q ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
. .......++...|.+|+.+|+-+.|...|+.+-++.
T Consensus 109 ~--~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 109 D--QTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred c--cchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 5 455578889999999999999999999999987764
No 128
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.39 E-value=3.9e-06 Score=67.26 Aligned_cols=104 Identities=22% Similarity=0.251 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
+..++.-.+.+|..+...|++..|+..|..|++ ..+....+++..|.+|...|+-.-|+..+.+++++.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK----- 102 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVE------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK----- 102 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC-----
Confidence 344666788999999999999999999999999 444488999999999999999999999999999985
Q ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 193 YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
|+..-+....|.++.++|++++|...|++.++.-+
T Consensus 103 -pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~ 137 (504)
T KOG0624|consen 103 -PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP 137 (504)
T ss_pred -ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC
Confidence 88888999999999999999999999999987543
No 129
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.39 E-value=2.9e-05 Score=65.44 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=75.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKK-AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~-~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
+...+.....+|+++.|..++.++.+..++ ... .....+.++...|++++|+..+++..+.. |..+.
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~------~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~------P~~~~ 188 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAELADN------DQLPVEITRVRIQLARNENHAARHGVDKLLEVA------PRHPE 188 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCc------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCHH
Confidence 334456668999999999999999874333 211 22234889999999999999999998875 77889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
++..++.+|...|++++|.+.+.+..+
T Consensus 189 al~ll~~~~~~~gdw~~a~~~l~~l~k 215 (398)
T PRK10747 189 VLRLAEQAYIRTGAWSSLLDILPSMAK 215 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999988877664
No 130
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.37 E-value=1.1e-05 Score=67.95 Aligned_cols=87 Identities=17% Similarity=0.161 Sum_probs=71.6
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 026948 129 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 208 (230)
Q Consensus 129 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 208 (230)
..+++++++...++.++. .+..+..+..+|.++...+++++|.++|+++++.. |. ...+..++.++.
T Consensus 306 ~~~~~~~al~~~e~~lk~------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~------P~-~~~~~~La~~~~ 372 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQ------HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR------PD-AYDYAWLADALD 372 (398)
T ss_pred cCCChHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CC-HHHHHHHHHHHH
Confidence 347777777777777763 33366788899999999999999999999999874 44 455778999999
Q ss_pred HcCCHHHHHHHHHHHHHhhh
Q 026948 209 ELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~~ 228 (230)
++|+.++|..+|++++....
T Consensus 373 ~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 373 RLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HcCCHHHHHHHHHHHHhhhc
Confidence 99999999999999988653
No 131
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.37 E-value=4.4e-06 Score=74.59 Aligned_cols=102 Identities=20% Similarity=0.306 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
++..++.-|+.-|+|+.+.....-++.-. ......+.+++++|.+|-.+|+|++|..||.++++... ....-
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t---~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-----d~~~l 343 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNT---ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN-----DNFVL 343 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-----CCccc
Confidence 45556666666666666666665555422 22333555566666666666666666666666655531 11244
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.++.+|..|...|+++.|..+|++.+...+
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p 373 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLP 373 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCc
Confidence 556666666666666666666666665443
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.36 E-value=3.9e-05 Score=55.25 Aligned_cols=101 Identities=17% Similarity=0.062 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
.+...+.........++...+...+++..+ ..++.+....+...+|.++...|++++|+..|++++... +++..
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l 83 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPEL 83 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHH
Confidence 333445555555578899988777777655 455666678889999999999999999999999987743 34445
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDK 222 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~ 222 (230)
...+...+|.++...|++++|+..++.
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 567899999999999999999999866
No 133
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.35 E-value=7.2e-06 Score=72.68 Aligned_cols=102 Identities=22% Similarity=0.318 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
.+..++..|+..+..|++++|...+.++++..+. ...+|+.||.+|.++|+.+++...+-.|-.+. |.
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~------p~ 205 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN------PK 205 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC------CC
Confidence 4667888999999999999999999999997666 88899999999999999999999998887664 66
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
....|..++....++|++++|+-+|.+|++.-++
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~ 239 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPS 239 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 6699999999999999999999999999987653
No 134
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.34 E-value=9.4e-06 Score=55.85 Aligned_cols=98 Identities=17% Similarity=0.116 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh
Q 026948 74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP 153 (230)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 153 (230)
+.......+.+.++..+.+.+...+. . .....+.+.+|.++...|++++|+.++++++...+. .
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~-----------~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~ 72 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPK-----------S--TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---S 72 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-----------c--cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---C
Confidence 44444445666677777777665543 1 112346788999999999999999999999986543 2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
+....++..+|.++...|++++|+.+++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 2235678999999999999999999999998875
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=2.9e-05 Score=59.84 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=91.0
Q ss_pred HHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026948 80 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKA 159 (230)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~ 159 (230)
......+++.|...++..|. +...+-..--+.-.+|+.-+|+....+-++.+.. ...+
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt----------------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D~EA 156 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPT----------------DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------DQEA 156 (289)
T ss_pred hhchhhHHHHHHHHhccCcc----------------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------cHHH
Confidence 33556666666666654443 2222333334445678888999988888886655 6788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhh
Q 026948 160 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYISRLE 228 (230)
Q Consensus 160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~~~~ 228 (230)
+..++.+|...|+|++|.-++++.+-+. |-.+..+..+|++++-+| +++-|.+||.+++++.+
T Consensus 157 W~eLaeiY~~~~~f~kA~fClEE~ll~~------P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 157 WHELAEIYLSEGDFEKAAFCLEELLLIQ------PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999998775 777788888899887665 67889999999999875
No 136
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.33 E-value=1.8e-06 Score=71.88 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 153 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 153 ~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
.+..+.+++|+|.++...|+|++|+..|++++++.....+ ...+|+|+|.+|..+|++++|+.++++|++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae---A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE---AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3447788999999999999999999999999999888321 1267999999999999999999999999986
No 137
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.32 E-value=3.1e-06 Score=54.79 Aligned_cols=64 Identities=30% Similarity=0.460 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
+++++|.++...|++++|+..++++++.. +....++..+|.++...|++++|..+++++++..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46789999999999999999999998875 44558899999999999999999999999988654
No 138
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.31 E-value=1.4e-05 Score=63.34 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=74.7
Q ss_pred HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948 81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 160 (230)
.++..++..|...+..+|. .. ....+++++|.+|+..|++++|+.+|.++++.++ +.+....++
T Consensus 157 ~~y~~Ai~af~~fl~~yP~-----------s~--~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl 220 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPD-----------ST--YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAM 220 (263)
T ss_pred CCHHHHHHHHHHHHHHCcC-----------Cc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHH
Confidence 4567777778888887775 11 1234789999999999999999999999888554 445578889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 161 RGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
+.+|.++...|++++|+..|+++++..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999998775
No 139
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.31 E-value=4.5e-05 Score=70.85 Aligned_cols=116 Identities=17% Similarity=0.131 Sum_probs=93.6
Q ss_pred CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026948 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP--IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 188 (230)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~--~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~ 188 (230)
++......+...+|.++...|++++|..++.+++.+....+.. ......+..+|.++...|++++|...+++++.+..
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 3344455577789999999999999999999999988875432 22344567789999999999999999999999876
Q ss_pred HhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 189 REGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 189 ~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
... ......++..+|.++...|+++.|...++++..+.
T Consensus 605 ~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 605 NYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred ccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 443 23356678889999999999999999999998764
No 140
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.31 E-value=1.4e-05 Score=67.56 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=69.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHHHHHhCCcccHHHHH
Q 026948 125 KNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK--KAARGLGASLQRQGKYREAIKYHSM--VLQISEREGEYSGSTEAY 200 (230)
Q Consensus 125 ~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~--~~~~~lg~~~~~~~~~~~Ai~~~~~--al~~~~~~~~~~~~~~~~ 200 (230)
......++.+.+....+++++..+. .+ ..+..+|.++.+.|++++|.++|++ +++.. |+.. .+
T Consensus 307 ~~~l~~~~~~~~~~~~e~~lk~~p~------~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~------p~~~-~~ 373 (409)
T TIGR00540 307 IPRLKPEDNEKLEKLIEKQAKNVDD------KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ------LDAN-DL 373 (409)
T ss_pred hhhcCCCChHHHHHHHHHHHHhCCC------ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC------CCHH-HH
Confidence 3334457777777778777773333 44 7788999999999999999999995 54442 4433 46
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 201 GAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 201 ~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
..+|.++.++|+.++|.++|++++...
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 689999999999999999999997653
No 141
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.27 E-value=7.2e-06 Score=71.62 Aligned_cols=99 Identities=24% Similarity=0.245 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHhCCccc
Q 026948 118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK--YHSMVLQISEREGEYSG 195 (230)
Q Consensus 118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~--~~~~al~~~~~~~~~~~ 195 (230)
..++..|..+...|++.+|...|..|+.+.+. ...+...+|.++.+.|+..-|.+ .+..+++++ |.
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d------p~ 752 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD------PL 752 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC------CC
Confidence 35567788888888899999999988886655 67788889999999998888888 888888885 88
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
..++|+.+|.++..+|+.++|.++|+-|+++-+
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999988644
No 142
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00013 Score=56.00 Aligned_cols=113 Identities=16% Similarity=0.091 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
.+..+..-+..|....+|++|..++.++.+.+++.......+.++-..|........+.++..++++|..+..+.+.+..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 34445566778888899999999999999988887777778888999999999999999999999999999988776554
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
-+.++-.-|.+ .+..+.++|+..|++++++++.
T Consensus 110 AAmaleKAak~-lenv~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 110 AAMALEKAAKA-LENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred HHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhc
Confidence 45555544544 4566899999999999998865
No 143
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.22 E-value=0.0003 Score=47.96 Aligned_cols=110 Identities=20% Similarity=0.217 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPI------EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~------~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
..+.-|.-....|-|++|...+.++.++...++... ..+-++-.|+..+..+|+|++++..-.+++......++
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE 90 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE 90 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Confidence 344555666778999999999999999998765322 24566778899999999999999999999987766543
Q ss_pred cc-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 193 YS-----GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 193 ~~-----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.. ....+-++.|.++..+|+.++|+..|+++-++..
T Consensus 91 L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 91 LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 22 2344667889999999999999999999988764
No 144
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=4.1e-06 Score=63.80 Aligned_cols=96 Identities=9% Similarity=0.067 Sum_probs=86.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 199 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 199 (230)
+...|..++.-.+|+.|+++|.+++.+.+. .+..+.|-+.+|++.++++.+...+++++++. ++....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~------~~~Y~tnralchlk~~~~~~v~~dcrralql~------~N~vk~ 80 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPT------VASYYTNRALCHLKLKHWEPVEEDCRRALQLD------PNLVKA 80 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCC------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC------hHHHHH
Confidence 445688888899999999999999996555 67778899999999999999999999999996 888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 200 YGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
++.+|.+......|++|+..+++|.+..
T Consensus 81 h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 81 HYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 9999999999999999999999997765
No 145
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=2e-05 Score=65.79 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948 115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 194 (230)
Q Consensus 115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 194 (230)
....+.+..+..++..|.+++|...+...+. +.+.+.......|.++...++.++|++.+++++... |
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~------P 371 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIA------AQPDNPYYLELAGDILLEANKAKEAIERLKKALALD------P 371 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------C
Confidence 3445788888999999999999999998777 344477778889999999999999999999999986 7
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 195 GSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.......++|.+|.+.|++++|+...+..+.-.
T Consensus 372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 372 NSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 778899999999999999999999998887644
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.00011 Score=56.67 Aligned_cols=97 Identities=24% Similarity=0.222 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
+.-..|..+...|++++|+++|+..++ +.+....++-..-.+...+|+.-+||+.+..-++.. +.+.+
T Consensus 88 V~~lkam~lEa~~~~~~A~e~y~~lL~------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F------~~D~E 155 (289)
T KOG3060|consen 88 VGKLKAMLLEATGNYKEAIEYYESLLE------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF------MNDQE 155 (289)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhc------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh------cCcHH
Confidence 344567888889999999999999888 444455555555556778888889999999988886 88899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
+|..++++|...|+|++|..+|++.+=+.
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999987543
No 147
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=98.13 E-value=7.1e-05 Score=49.69 Aligned_cols=81 Identities=19% Similarity=0.248 Sum_probs=67.9
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 026948 127 FLRNQDLEKAFTEFKAALELAQNVKDPI---EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 203 (230)
Q Consensus 127 ~~~~g~~~~A~~~~~~al~l~~~~~~~~---~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 203 (230)
....|+|..|++.+.+..+......... ....+..++|.++...|++++|+..+++++++.++.+|......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3467999999999999999887765544 5677889999999999999999999999999999999987777776666
Q ss_pred HHHH
Q 026948 204 ADCY 207 (230)
Q Consensus 204 g~~y 207 (230)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 5543
No 148
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.12 E-value=2.5e-05 Score=54.17 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
.+.++++.++-..|+.++|+.+|++++... .+.+....++..+|.++..+|++++|...+++++.-++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g---L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG---LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 467899999999999999999999998752 233456789999999999999999999999999886553
No 149
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=7e-06 Score=67.14 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=93.4
Q ss_pred cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDP------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~------~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
+...+.+++..|.+++..++.+.|+.+|++++.+.+.+.+. +........-|+-.++.|+|..|.++|..+|.+
T Consensus 199 d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 199 DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 33456678889999999999999999999999988764332 223444667789999999999999999999999
Q ss_pred HHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 187 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.+... ...+.+|.|.|.+...+|+.++|+...+.|+++-
T Consensus 279 dP~n~--~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 279 DPSNK--KTNAKLYGNRALVNIRLGRLREAISDCNEALKID 317 (486)
T ss_pred Ccccc--chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC
Confidence 75522 3468899999999999999999999999998864
No 150
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.12 E-value=4.2e-05 Score=69.66 Aligned_cols=127 Identities=6% Similarity=-0.047 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCC
Q 026948 73 QLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKD 152 (230)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~ 152 (230)
++......++...++..+++.+...|. ...+...+..++...|+.++|+.++++++. .
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~----------------~~~av~dll~l~~~~G~~~~A~~~~eka~~------p 97 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPL----------------QSGQVDDWLQIAGWAGRDQEVIDVYERYQS------S 97 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCcc----------------chhhHHHHHHHHHHcCCcHHHHHHHHHhcc------C
Confidence 344444555666788889999988876 111222667777788999999999999993 2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 153 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 153 ~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.......+..+|.++...|+|++|++.|+++++.. |..+.++..++.+|...++.++|++.++++....
T Consensus 98 ~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 98 MNISSRGLASAARAYRNEKRWDQALALWQSSLKKD------PTNPDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 22244556667889999999999999999999885 7678888899999999999999999999887654
No 151
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.06 E-value=8.9e-06 Score=43.02 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
+|+++|.+|..+|++++|+.+|++++++-
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 44555555555555555555555555443
No 152
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=98.06 E-value=0.00012 Score=56.14 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=76.6
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-------CcccHHHHH
Q 026948 129 RNQDLEKAFTEFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-------EYSGSTEAY 200 (230)
Q Consensus 129 ~~g~~~~A~~~~~~al~l~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~-------~~~~~~~~~ 200 (230)
...++++|+..|.-|+-.+...+ +....+..+..++.+|...|+.+....++++|++..++.- ...+.....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34678889998888887777544 4445788889999999999997777777777776665521 122456788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 201 GAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 201 ~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
+.+|.++...|++++|..+|.+++...
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 889999999999999999999988643
No 153
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.04 E-value=1.5e-05 Score=41.98 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
.+++.+|.++..+|++++|+.+|++++++.++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555666666666666555555443
No 154
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.0001 Score=56.62 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC------ChH------HHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948 115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK------DPI------EEKKAARGLGASLQRQGKYREAIKYHSM 182 (230)
Q Consensus 115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------~~~------~~~~~~~~lg~~~~~~~~~~~Ai~~~~~ 182 (230)
..+.++...|+-++.+|+|.+|...|..|+...++.. +.. .....+.|...|+...|+|-++++.+..
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 3445677999999999999999999999998776531 111 1344588999999999999999999999
Q ss_pred HHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 183 VLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 183 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
.+... +.+..+|+..|.+....=+.++|...+.++++.
T Consensus 256 iL~~~------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 256 ILRHH------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhcC------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 98886 889999999999999999999999999999875
No 155
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=1.3e-05 Score=60.41 Aligned_cols=101 Identities=16% Similarity=0.074 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
++..+..++.+|..|-..|-..-|...|.+++.+.++ .+.+++.+|..+...|+|+-|.+.|...++++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD----- 129 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD----- 129 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC------cHHHHHHHHHHHHhcccchHHHHHhhhHhccC-----
Confidence 3446667889999999999999999999999997666 88899999999999999999999999999986
Q ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 193 YSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
|....++.|.|..+.--|+|+-|.+.+.+-.+
T Consensus 130 -p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 130 -PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred -CcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 77788999999999999999999988766443
No 156
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=1.9e-05 Score=68.74 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
+...+|...+..++|.++..+++.++++.+- ....++++|.+..+.++++.|.++|..++.+. |+...
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~npl------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~------Pd~~e 554 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPL------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE------PDNAE 554 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCcc------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC------CCchh
Confidence 4555666667789999999999999995544 77889999999999999999999999999886 88999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
+|+|++.+|...|+..+|...+++|++..
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999998743
No 157
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.99 E-value=0.00036 Score=60.48 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=88.2
Q ss_pred CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 026948 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190 (230)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~ 190 (230)
.++...+.+++.+|..|...|++++|+++.++++. ..+.....|...|.++-+.|++++|.++++.|-.++.+.
T Consensus 188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 34444566788999999999999999999999999 445588999999999999999999999999887654430
Q ss_pred -----------------------------CC-cc-------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 191 -----------------------------GE-YS-------GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 191 -----------------------------~~-~~-------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+ .+ .........|.+|...|++..|+..|..+.++++
T Consensus 262 RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 262 RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 11 11 0111223469999999999999999999988775
No 158
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.98 E-value=2e-05 Score=42.36 Aligned_cols=26 Identities=23% Similarity=0.617 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 200 YGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
|.+||.+|..+|+|++|+.+|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555443
No 159
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.98 E-value=9.5e-05 Score=63.77 Aligned_cols=93 Identities=14% Similarity=0.216 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 199 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 199 (230)
|..+|.++....+|++|+.+|..|+.+.++ +...+..++....++++|+...+.-.+-++.. |..-..
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~------~~~ra~ 145 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKD------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR------PSQRAS 145 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh------hhhHHH
Confidence 334444444445555555555555543222 44444445544455555554444444444332 444455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948 200 YGAIADCYTELGDLERAARFYDKYI 224 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al 224 (230)
|...+.++...|+|..|....+...
T Consensus 146 w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 146 WIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665554443
No 160
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.97 E-value=0.0001 Score=67.04 Aligned_cols=106 Identities=13% Similarity=0.200 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 196 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 196 (230)
-.++..+|.+|..+|++++|...|++++++. +..+.+++++|..+... +.++|+.++.+|+...-........
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~ 188 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKAD------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGI 188 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHH
Confidence 3488899999999999999999999999965 44899999999999999 9999999999998765432211111
Q ss_pred H----------------------HHHHHHH------------HHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 197 T----------------------EAYGAIA------------DCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 197 ~----------------------~~~~~lg------------~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
. .....+| .+|.+.++|++++..++.++++-++
T Consensus 189 ~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 189 EEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 1 1122234 8899999999999999999987654
No 161
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.96 E-value=3e-05 Score=41.62 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMVLQISER 189 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~ 189 (230)
++.+||.+|...|+|++|+++|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678888888888888888888888766543
No 162
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.95 E-value=8.6e-06 Score=43.14 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHH
Q 026948 179 YHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAAR 218 (230)
Q Consensus 179 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 218 (230)
+|+++|++. |..+.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~------P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELN------PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHC------CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 378888886 8899999999999999999999863
No 163
>PRK11906 transcriptional regulator; Provisional
Probab=97.93 E-value=0.00015 Score=60.77 Aligned_cols=85 Identities=14% Similarity=0.016 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC
Q 026948 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 211 (230)
Q Consensus 132 ~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 211 (230)
+-.+|.+...+|+++.+. .+.++..+|.+....++++.|+..|++|+.+. |+.+.+++..|.+....|
T Consensus 319 ~~~~a~~~A~rAveld~~------Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~------Pn~A~~~~~~~~~~~~~G 386 (458)
T PRK11906 319 AAQKALELLDYVSDITTV------DGKILAIMGLITGLSGQAKVSHILFEQAKIHS------TDIASLYYYRALVHFHNE 386 (458)
T ss_pred HHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC------CccHHHHHHHHHHHHHcC
Confidence 345666777777775544 78899999999999999999999999999996 899999999999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 026948 212 DLERAARFYDKYISRLE 228 (230)
Q Consensus 212 ~~~~A~~~~~~al~~~~ 228 (230)
+.++|.+..++++++.+
T Consensus 387 ~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 387 KIEEARICIDKSLQLEP 403 (458)
T ss_pred CHHHHHHHHHHHhccCc
Confidence 99999999999988653
No 164
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.91 E-value=3e-05 Score=43.69 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 205 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 205 (230)
.++..+|.+|...|++++|++.|+++++.. |++..++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCCHHHHHHhhh
Confidence 467889999999999999999999999986 888889888875
No 165
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00031 Score=57.92 Aligned_cols=133 Identities=17% Similarity=0.129 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh----
Q 026948 74 LRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN---- 149 (230)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---- 149 (230)
+..+-...+.++++..|+.+....|- ....+-.+-.+|...|++.+|....+.++...+.
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq~Lap~----------------rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~ 404 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQMLAPY----------------RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARS 404 (564)
T ss_pred cHHHHhccchHHHHHHHHHHHhcchh----------------hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhh
Confidence 33444444667777777777777654 3333444445555555555554433222221111
Q ss_pred --------------------------cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 026948 150 --------------------------VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 203 (230)
Q Consensus 150 --------------------------~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 203 (230)
..-.+....+-..++..+..-|.+..++..+++.+... + +...+..+
T Consensus 405 LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~------~-D~~LH~~L 477 (564)
T KOG1174|consen 405 LTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF------P-DVNLHNHL 477 (564)
T ss_pred hhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc------c-ccHHHHHH
Confidence 11233345566778888999999999999999998874 3 45688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 204 ADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 204 g~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
|+++...+.+++|..+|..|+.+-++
T Consensus 478 gd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 478 GDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999987654
No 166
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.87 E-value=4.7e-05 Score=40.15 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 157 KKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
+.+++++|.++..+|++++|+.+|++++++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3578899999999999999999999999885
No 167
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.85 E-value=5.4e-05 Score=66.06 Aligned_cols=101 Identities=16% Similarity=0.207 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
....++..|.+..+.++++.|..+|...+.+.+. ...+.+|+...|...++-.+|...+++|++.. ..
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd------~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn------~~ 585 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD------NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN------YQ 585 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC------chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC------CC
Confidence 5568999999999999999999999999996555 88999999999999999999999999999885 45
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
....|.|--.+-...|++++|+..|.+.+.+-.
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 567888888899999999999999999887643
No 168
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.84 E-value=0.00074 Score=48.52 Aligned_cols=103 Identities=25% Similarity=0.342 Sum_probs=76.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----CC-h----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNV-----KD-P----------IEEKKAARGLGASLQRQGKYREAIKYHSMV 183 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----~~-~----------~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a 183 (230)
....|......++.+.++..+.+++.+++.- .+ . .....+...++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3444666667788888888888888877531 11 1 112335667778888999999999999999
Q ss_pred HHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
+... |....+|..+-.+|...|++..|+..|++..+.+.
T Consensus 89 l~~d------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 89 LALD------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHS------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HhcC------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 9996 88899999999999999999999999999877654
No 169
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=8.3e-05 Score=56.87 Aligned_cols=104 Identities=21% Similarity=0.182 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948 68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 147 (230)
Q Consensus 68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~ 147 (230)
.++.++++..+..-++..++..|.+++...|. .+.-+.+.+.+|++..+++.+.....+++++.
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~----------------~~~Y~tnralchlk~~~~~~v~~dcrralql~ 74 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPT----------------VASYYTNRALCHLKLKHWEPVEEDCRRALQLD 74 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCC----------------cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC
Confidence 46777777777777889999999999998886 23345588999999999999999999999977
Q ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948 148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 193 (230)
Q Consensus 148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 193 (230)
++ ...+.+.+|.+......|++||..++++..+.+.....
T Consensus 75 ~N------~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 75 PN------LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred hH------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence 66 88999999999999999999999999998888775543
No 170
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.82 E-value=0.0017 Score=48.33 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 196 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 196 (230)
-.++..+|..|.+.|+.++|+..|.++.+. +.........+.++-.+....+++.....+..++-.+.+..++....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 346889999999999999999999997763 33444466778888888999999999999999998888765554444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 197 TEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
......-|..+...++|..|...|-.+..
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 45566678888899999999998876653
No 171
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.81 E-value=0.0002 Score=55.92 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=72.0
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
++..+...|+.-+..+|++ .....+++++|.+++.+|+|++|...|..+.+ ..++.+..+.++.
T Consensus 156 dy~~A~~~F~~fi~~YP~s-------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdall 219 (262)
T COG1729 156 DYAEAEQAFQAFIKKYPNS-------------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDALL 219 (262)
T ss_pred CHHHHHHHHHHHHHcCCCC-------------cccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHHH
Confidence 4555556666666666652 12344799999999999999999999998877 4555555778999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
.+|.+..++|+.++|...|+++++-.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 99999999999999999999998775
No 172
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.79 E-value=0.00076 Score=58.07 Aligned_cols=103 Identities=19% Similarity=0.098 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
-++..|.++...|+.++|++.+++++..... .+.....+++.+|.++..+.+|++|.++|.+..+.. .-..+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-----~WSka~ 341 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-----KWSKAF 341 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-----ccHHHH
Confidence 4567899999999999999999998853333 444566789999999999999999999999987653 123455
Q ss_pred HHHHHHHHHHHcCCH-------HHHHHHHHHHHHhhh
Q 026948 199 AYGAIADCYTELGDL-------ERAARFYDKYISRLE 228 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~-------~~A~~~~~~al~~~~ 228 (230)
..+..|.|+...|+. ++|.+++.++-....
T Consensus 342 Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 342 YAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 567779999999999 888888887765543
No 173
>PRK15331 chaperone protein SicA; Provisional
Probab=97.78 E-value=0.00025 Score=51.44 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=63.4
Q ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.-.+-+...-...+..|.-++..|++++|...|+-..... +...+.+..||-|+..+++|++|+..|-.|..+-
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344556677788999999999999999999998866553 7778899999999999999999999999887654
Q ss_pred h
Q 026948 228 E 228 (230)
Q Consensus 228 ~ 228 (230)
.
T Consensus 102 ~ 102 (165)
T PRK15331 102 K 102 (165)
T ss_pred c
Confidence 3
No 174
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.77 E-value=0.00035 Score=56.36 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948 68 QRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELA 147 (230)
Q Consensus 68 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~ 147 (230)
..+.++++.+..++.++++|+.|.+.+...|. +.-.+.+++..|+++.+|..|....+.|+.+.
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~----------------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd 161 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH----------------NPVYHINRALAYLKQKSFAQAEEDCEAAIALD 161 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCC----------------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 34778889999999999999999999998885 23356688999999999999999999999987
Q ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
+. ...+|...|.+-..+|+..+|.+.++.++++.
T Consensus 162 ~~------Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 162 KL------YVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HH------HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 66 78889999999999999999999999999885
No 175
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.75 E-value=0.0001 Score=38.72 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+|+.+|.+|..+|++++|..+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3566666666666666666666666666544
No 176
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.73 E-value=0.00042 Score=50.94 Aligned_cols=83 Identities=19% Similarity=0.251 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 026948 133 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----------GKYREAIKYHSMVLQISEREGEYSGSTEAYGA 202 (230)
Q Consensus 133 ~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----------~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 202 (230)
|+.|.+.++......+. .+..+++=|.++.++ ..+++|+.=|++|+.+. |...+++++
T Consensus 7 FE~ark~aea~y~~nP~------DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~------P~~hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL------DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN------PNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHH
T ss_pred HHHHHHHHHHHHHhCcH------hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC------CchHHHHHH
Confidence 55666666666664333 455555555555443 44677788888888886 888999999
Q ss_pred HHHHHHHcCC----HHHHHHHHHHHHHhh
Q 026948 203 IADCYTELGD----LERAARFYDKYISRL 227 (230)
Q Consensus 203 lg~~y~~~g~----~~~A~~~~~~al~~~ 227 (230)
+|.+|..++. ..+|..+|++|.+.+
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~F 103 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYF 103 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHH
Confidence 9999987654 345555555555444
No 177
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.71 E-value=0.00092 Score=47.47 Aligned_cols=103 Identities=13% Similarity=0.117 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948 69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 148 (230)
Q Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 148 (230)
.+-..+........+..++..+.......|. ++-. ..+.+.+|..|+..+++++|+..+++.+++.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-----------g~ya--~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPF-----------GEYA--EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-----------Cccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3445555666666777777777776666665 2221 23688999999999999999999999999887
Q ss_pred hcCChHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHHH
Q 026948 149 NVKDPIEEKKAARGLGASLQRQGK---------------YREAIKYHSMVLQIS 187 (230)
Q Consensus 149 ~~~~~~~~~~~~~~lg~~~~~~~~---------------~~~Ai~~~~~al~~~ 187 (230)
.+.+ ...+++-.|.+++.+.+ ..+|...|++.++..
T Consensus 79 ~hp~---vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 79 THPN---VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCC---ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 7543 55678888888888776 888888888887765
No 178
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0011 Score=56.88 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH------------------------HHhcC-ChHHHHHHHHHHHHHHHHcCCH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALEL------------------------AQNVK-DPIEEKKAARGLGASLQRQGKY 173 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l------------------------~~~~~-~~~~~~~~~~~lg~~~~~~~~~ 173 (230)
...-.|.+++++|+|++|++.|+...+- ....+ ........++|.+-++...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 5666799999999999999988776420 00111 1122455689999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCc---------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 174 REAIKYHSMVLQISEREGEY---------SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 174 ~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+|++.+++|+++.++.-.. .....+...++.++..+|+.++|...|...+....
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 99999999998887763211 12344677899999999999999999999887543
No 179
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.67 E-value=0.00016 Score=37.97 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 157 KKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
+.+++.+|.++...|++++|+++|++++++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999999885
No 180
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.64 E-value=0.00058 Score=45.30 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=55.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcc---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 167 LQRQGKYREAIKYHSMVLQISEREGEYS---GSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 167 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~---~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
..+.|||.+|++.+.+..+......... ....+..++|.++...|++++|...+++++++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999987776655 56678899999999999999999999999998753
No 181
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.60 E-value=0.02 Score=44.61 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948 69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 148 (230)
Q Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 148 (230)
.+-+++......+....++..|.......|. ++.. -.+.+.++..+++.+++++|+...++.+.+.+
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-----------s~~~--~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPF-----------SPYS--EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------Cccc--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 3444455555556667777777777766664 2222 23688899999999999999999999999877
Q ss_pred hcCChHHHHHHHHHHHHHHHHc-----CCH---HHHHHHHHHHHHHHHHhCCcccHHHH--------------HHHHHHH
Q 026948 149 NVKDPIEEKKAARGLGASLQRQ-----GKY---REAIKYHSMVLQISEREGEYSGSTEA--------------YGAIADC 206 (230)
Q Consensus 149 ~~~~~~~~~~~~~~lg~~~~~~-----~~~---~~Ai~~~~~al~~~~~~~~~~~~~~~--------------~~~lg~~ 206 (230)
...+ ...+++-.|.+++.. .|. .+|+..|+..+. +.++++...++ -..+|..
T Consensus 103 ~~~n---~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~---ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 103 THPN---ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ---RYPNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred CCCC---hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH---HCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6444 445666667666532 333 345555555544 34444432222 2347889
Q ss_pred HHHcCCHHHHHHHHHHHHHhhh
Q 026948 207 YTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 207 y~~~g~~~~A~~~~~~al~~~~ 228 (230)
|.+.|.+-.|+..++..++-++
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~ 198 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYP 198 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccc
Confidence 9999999999999999987654
No 182
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.56 E-value=0.0046 Score=48.11 Aligned_cols=106 Identities=17% Similarity=0.140 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 196 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 196 (230)
+..++..|....+.|++++|+..|++... ++...+....+...++.++++.++|++|+.+.++-+... +.+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~---~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly---P~~~n~ 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDS---RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY---PTHPNA 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---CCCCCh
Confidence 34788999999999999999999998664 555555568889999999999999999999999987775 455667
Q ss_pred HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhhh
Q 026948 197 TEAYGAIADCYTELGD--------LERAARFYDKYISRLE 228 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~--------~~~A~~~~~~al~~~~ 228 (230)
..+++..|.++...=+ -.+|+..++..++.++
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP 147 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP 147 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC
Confidence 7888888988754321 2466666666666554
No 183
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.56 E-value=0.00075 Score=58.44 Aligned_cols=130 Identities=15% Similarity=0.098 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948 70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 149 (230)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 149 (230)
+..+..+.++..++...+...++.+...+. ...++-..|..+...|+-++|.++...++.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~e----------------HgeslAmkGL~L~~lg~~~ea~~~vr~glr---- 69 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPE----------------HGESLAMKGLTLNCLGKKEEAYELVRLGLR---- 69 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCc----------------cchhHHhccchhhcccchHHHHHHHHHHhc----
Confidence 444455555555666666556666665554 333567789999999999999999999998
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
+......+++-+|.+++..++|++|+++|+.|+.+. +++...+..++....++++|+-....-.+-++..
T Consensus 70 --~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 70 --NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred --cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 333366788899999999999999999999999996 7788999999999999999998887777766643
No 184
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.54 E-value=5.6e-05 Score=63.15 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=84.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 026948 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 201 (230)
Q Consensus 122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 201 (230)
..+...+..++|+.|+..|.+|+++.++ .+..+.+.+..+.+.++|..|+..+.++++.. |....+|+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpn------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d------P~~~K~Y~ 76 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPN------CAIYFANRALAHLKVESFGGALHDALKAIELD------PTYIKAYV 76 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCc------ceeeechhhhhheeechhhhHHHHHHhhhhcC------chhhheee
Confidence 4567778889999999999999997665 55566777788999999999999999999985 88899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 202 AIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 202 ~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
..|.+...++++.+|...|++.....++
T Consensus 77 rrg~a~m~l~~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 77 RRGTAVMALGEFKKALLDLEKVKKLAPN 104 (476)
T ss_pred eccHHHHhHHHHHHHHHHHHHhhhcCcC
Confidence 9999999999999999999998776654
No 185
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0027 Score=51.61 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948 115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHS 181 (230)
Q Consensus 115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~ 181 (230)
++.....++|.+++..|+|++|+..|+-+.. +. + -.+....+++-+++-.|.|.+|.....
T Consensus 55 EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~--~~--~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 55 EEDSLQLWIAHCYFHLGDYEEALNVYTFLMN--KD--D--APAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHhc--cC--C--CCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 3445777899999999999999886654443 10 0 012223344445555555555544433
No 186
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.52 E-value=0.0015 Score=52.61 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948 117 LLSRLKTGKNFLRNQ--DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 194 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 194 (230)
..+.+..+++....| ++.+|...|++..+ +. ...+..+.+++.++..+|+|++|.+.+++++... +
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~---~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~------~ 232 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSD---KF---GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD------P 232 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------C
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh---cc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------c
Confidence 334555556655554 68899988888443 32 2245678899999999999999999999987543 7
Q ss_pred cHHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 026948 195 GSTEAYGAIADCYTELGDL-ERAARFYDKYI 224 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~-~~A~~~~~~al 224 (230)
..++++.|+..+...+|+. +.+.++..+.-
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 7889999999999999998 55555655543
No 187
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.52 E-value=0.0015 Score=50.24 Aligned_cols=97 Identities=22% Similarity=0.218 Sum_probs=71.5
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-------CChH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNV-------KDPI 154 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-------~~~~ 154 (230)
..+.++..|..++-.+.. ...+....+..++.+|++|...|+-+....++++|+..+... ....
T Consensus 92 t~~~ai~~YkLAll~~~~---------~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~ 162 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQI---------KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM 162 (214)
T ss_pred CHHHHHHHHHHHHHHHHH---------hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence 345666667666655442 123455678889999999999999777777777777666532 1233
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 155 EEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 155 ~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
......+-+|..+++.|++++|+.+|.+.+...
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 456778899999999999999999999987653
No 188
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.50 E-value=0.00041 Score=62.77 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
.+..+|..|...+++.+|+..++.+++..++ ..++..++|.+|.+.|+|..|++.|.++..+. |....
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPk------D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr------P~s~y 631 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPK------DYNLWLGLGEAYPESGRYSHALKVFTKASLLR------PLSKY 631 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCch------hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC------cHhHH
Confidence 3446788888899999999999999996555 78889999999999999999999999998885 77777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
+-+..+......|+|++|...+.+.+..+
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 88889999999999999999999888755
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.47 E-value=0.0025 Score=55.49 Aligned_cols=107 Identities=15% Similarity=0.086 Sum_probs=76.3
Q ss_pred ccHHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC--------HHHHHHHH
Q 026948 112 PKKEELLSRLKTGKNFLRNQD---LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK--------YREAIKYH 180 (230)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~--------~~~Ai~~~ 180 (230)
+....++.++..|.-|...++ +.+|+.+|++++++.+. .+.++-.++.++..... ...+.+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~------~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD------FTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 344467778888888876655 88999999999997766 66677776666654322 23344444
Q ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 181 SMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 181 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
++++.+ ...+..+.+|..+|......|++++|..++++|+++.+
T Consensus 408 ~~a~al----~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p 451 (517)
T PRK10153 408 DNIVAL----PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM 451 (517)
T ss_pred HHhhhc----ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 443332 12344568899999999999999999999999998653
No 190
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00091 Score=55.24 Aligned_cols=97 Identities=11% Similarity=0.120 Sum_probs=84.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 199 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 199 (230)
++.-|...+..+++..|+.+-.++++..++ ...++.-.|......|+.++|+-.|+.|+.+. |..-++
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La------p~rL~~ 370 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPR------NHEALILKGRLLIALERHTQAVIAFRTAQMLA------PYRLEI 370 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcc------cchHHHhccHHHHhccchHHHHHHHHHHHhcc------hhhHHH
Confidence 444556677788999999999999986555 77889999999999999999999999999886 788899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 200 YGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
|..+-.+|...|++.+|...-+.+++.++
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~ 399 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQ 399 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence 99999999999999999998888887664
No 191
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.013 Score=45.40 Aligned_cols=107 Identities=18% Similarity=0.151 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
.-+..+--.....+.++|+..|++++.+...-+........+...++++.+.+.|++|-..+.+-..+..+....+....
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 44455556667889999999999999998875555556667788899999999999999999888777776666666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
.+...-.+|....||..|..+|+...+
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 777777778888899999999987544
No 192
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.45 E-value=0.00049 Score=36.08 Aligned_cols=30 Identities=30% Similarity=0.571 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
.+++.+|.++...|++++|+++|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 568889999999999999999999998886
No 193
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.42 E-value=0.00011 Score=38.88 Aligned_cols=34 Identities=38% Similarity=0.511 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q 026948 139 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIK 178 (230)
Q Consensus 139 ~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~ 178 (230)
+|++++++.++ .+.+++++|.++...|++++|++
T Consensus 1 ~y~kAie~~P~------n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPN------NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCC------CHHHHHHHHHHHHHCcCHHhhcC
Confidence 36788886665 88999999999999999999863
No 194
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.41 E-value=0.0031 Score=46.43 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHH
Q 026948 133 LEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGK-----------YREAIKYHSMVLQIS 187 (230)
Q Consensus 133 ~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~-----------~~~Ai~~~~~al~~~ 187 (230)
+++|+.-|++++.+.++ ...+++++|+++...+. |++|.++|++|.+..
T Consensus 51 iedAisK~eeAL~I~P~------~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~ 110 (186)
T PF06552_consen 51 IEDAISKFEEALKINPN------KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED 110 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC
Confidence 55677778888887766 78899999999987544 666666777766654
No 195
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.40 E-value=0.0021 Score=58.38 Aligned_cols=106 Identities=19% Similarity=0.166 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCcc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYS 194 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~ 194 (230)
+...+..+|..|-..|++.-|+..|.++..+.+. ...+.+..+...+..|+|.+|++.+...+..... .....
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~------s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~ 668 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL------SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQN 668 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6668999999999999999999999999996544 6777888899999999999999999988765432 12234
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 195 GSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
+.+.++..++..+...|=+.+|..++++++.++
T Consensus 669 gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 669 GLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 677888888888888999999999999998865
No 196
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.36 E-value=0.0076 Score=49.52 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH---------HHh----------------cCChHHHHHHHHHHHHHHHHcCCH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALEL---------AQN----------------VKDPIEEKKAARGLGASLQRQGKY 173 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l---------~~~----------------~~~~~~~~~~~~~lg~~~~~~~~~ 173 (230)
.....+.-+...|+.++|......+++- .+. ....+..+..+..||..+++.+.+
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w 344 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW 344 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH
Confidence 3444566677888888888876666641 111 011222346688999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 174 REAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 174 ~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+|-++|+.|++. ......+.-+|.++.++|+..+|.+.++.++-.+.
T Consensus 345 ~kA~~~leaAl~~-------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 345 GKASEALEAALKL-------RPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHHHHhc-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 9999999999877 33567788899999999999999999999996653
No 197
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.34 E-value=0.00045 Score=35.83 Aligned_cols=31 Identities=32% Similarity=0.692 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
+++.+|.++...|++++|+..|++.++.+++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666665543
No 198
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.31 E-value=0.015 Score=44.32 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948 69 RVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 148 (230)
Q Consensus 69 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 148 (230)
-+.+++.-++..+-..-+-..+.+++...|. .+.+.+.+|..+...|+|+.|.+.|+..+++.+
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~----------------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp 130 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPD----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCC----------------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCC
Confidence 4556666666666555555677788887776 566788899999999999999999999998765
Q ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948 149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 182 (230)
Q Consensus 149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~ 182 (230)
. ...+..|.|..++--|+|.-|.+.+.+
T Consensus 131 ~------y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 131 T------YNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred c------chHHHhccceeeeecCchHhhHHHHHH
Confidence 5 445566666666666666666666554
No 199
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.30 E-value=0.0016 Score=56.45 Aligned_cols=68 Identities=22% Similarity=0.219 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 153 PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 153 ~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
+....++++.++..|-..|++++|+++.++||+.. |..++.|...|.++.+.|++++|..+.+.|-.+
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT------PTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 34457889999999999999999999999999985 778999999999999999999999999988653
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.002 Score=50.36 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
+......+|.+-++-||-+.|..++++.-+...+.++-........+.+.+|.-.++|.+|...|.+.+..+ +.
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D------~~ 284 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD------PR 284 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC------CC
Confidence 444555788888888999988888887777777766777777788888888888899999999888887764 66
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+.+-++.|.|..-+|+...|++..+.++.+.+
T Consensus 285 ~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 285 NAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred chhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 677888888888889999999988888876543
No 201
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.29 E-value=0.00061 Score=38.23 Aligned_cols=33 Identities=27% Similarity=0.424 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYISRLESD 230 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 230 (230)
.++..+|.+|..+|++++|+..|+++++..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 578899999999999999999999999987653
No 202
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.24 E-value=0.0034 Score=54.85 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=66.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 026948 126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 205 (230)
Q Consensus 126 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 205 (230)
+-+....++.|...+.++...++ ..+.++.-......+++.++|++.++++++.. |.....|..+|.
T Consensus 627 le~en~e~eraR~llakar~~sg-------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~f------p~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSISG-------TERVWMKSANLERYLDNVEEALRLLEEALKSF------PDFHKLWLMLGQ 693 (913)
T ss_pred HhhccccHHHHHHHHHHHhccCC-------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC------CchHHHHHHHhH
Confidence 34455667777777766665322 24556666677778888999999999998886 778888899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhh
Q 026948 206 CYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 206 ~y~~~g~~~~A~~~~~~al~~~ 227 (230)
++..+++.+.|.+.|...++..
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccC
Confidence 9999999999999888876644
No 203
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.23 E-value=0.034 Score=41.39 Aligned_cols=94 Identities=29% Similarity=0.397 Sum_probs=74.5
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc-HHHHHHHHH
Q 026948 126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIA 204 (230)
Q Consensus 126 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~-~~~~~~~lg 204 (230)
++...|+++.|...+.+++...+. .......+...+..+...+++++|+..+.+++... +. ....+..++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~ 209 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLN------PDDDAEALLNLG 209 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC------cccchHHHHHhh
Confidence 888999999999999999652210 12345556666666888899999999999998885 44 467899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 205 DCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 205 ~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.++...+++++|...+.+++...+
T Consensus 210 ~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 210 LLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhCc
Confidence 999999999999999999887654
No 204
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.22 E-value=0.0011 Score=36.34 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
++.++|.+|..+|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4445555555555555555555555444
No 205
>PRK11906 transcriptional regulator; Provisional
Probab=97.21 E-value=0.005 Score=51.90 Aligned_cols=95 Identities=12% Similarity=-0.102 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
++.++..+|.+....++++.|...+++|+.+.++ .+.+++..|.+..-.|+.++|++..++++++. |.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs------P~ 404 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD------IASLYYYRALVHFHNEKIEEARICIDKSLQLE------PR 404 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------ch
Confidence 6667888999998899999999999999997776 88999999999999999999999999999985 43
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948 196 -STEAYGAIADCYTELGDLERAARFYDK 222 (230)
Q Consensus 196 -~~~~~~~lg~~y~~~g~~~~A~~~~~~ 222 (230)
...+...+..-.+--...++|+..|-+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 405 RRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred hhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 233333444412334456777776644
No 206
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.00093 Score=56.28 Aligned_cols=88 Identities=11% Similarity=0.079 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHhc----CC-------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQNV----KD-------PIEEKKAARGLGASLQRQGKYREAIKYHSMV 183 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~----~~-------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a 183 (230)
....++++|.++++.|.|.-+..+|.+|++ ..... .. .......+||.|..+...|++-.|.++|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 455678999999999999999999999996 22211 11 1113567999999999999999999999999
Q ss_pred HHHHHHhCCcccHHHHHHHHHHHHHH
Q 026948 184 LQISEREGEYSGSTEAYGAIADCYTE 209 (230)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~lg~~y~~ 209 (230)
.... ...+..|..+++|...
T Consensus 362 v~vf------h~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVF------HRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHH------hcCcHHHHHHHHHHHH
Confidence 9987 5567899999999754
No 207
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.15 E-value=0.00013 Score=58.66 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
++.-....+...+..|.++.|++.|..++++.+. .+..+-..+.++...++...|++.|..++.+. ++
T Consensus 113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ein------~D 180 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEIN------PD 180 (377)
T ss_pred HHHHHHHHHHHHhcCcchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhccC------cc
Confidence 3333445566677889999999999999995444 77888899999999999999999999999986 66
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
.+..|-..|.+...+|++++|..++..+.++
T Consensus 181 sa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 181 SAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 7778888999999999999999999998764
No 208
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0097 Score=51.33 Aligned_cols=98 Identities=19% Similarity=0.172 Sum_probs=74.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------
Q 026948 121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER----------- 189 (230)
Q Consensus 121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~----------- 189 (230)
+..++|.++++..++|+..++ .+. . . ....+.-.|.+++++|+|++|++.|+..++....
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~---~---~--~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~ 153 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLD---R---L--DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL 153 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-ccc---c---c--chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 688999999999999999887 222 1 1 1335666788999999999999999986422111
Q ss_pred -------------hCCc-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 190 -------------EGEY-SGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 190 -------------~~~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.+.. .+..+.++|.+-++...|+|.+|++.+++|+++.
T Consensus 154 a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~ 205 (652)
T KOG2376|consen 154 AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRIC 205 (652)
T ss_pred HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1121 2356789999999999999999999999997654
No 209
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.11 E-value=0.0018 Score=35.48 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.++.++|.+|..+|++++|..++++++.+.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 3566677777777777777777777666543
No 210
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.08 E-value=0.03 Score=50.02 Aligned_cols=116 Identities=16% Similarity=0.070 Sum_probs=87.5
Q ss_pred CccHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948 111 DPKKEELLSRLKTGKNFL-RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 189 (230)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~ 189 (230)
-+++.++.+.+.+|.++. ...|++.|..+..+++.+..+.+-......+.+-++.++.+.+... |...+++.++..+.
T Consensus 53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET 131 (608)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence 456778999999999988 6799999999999999999885555556677777888888887777 99999999998865
Q ss_pred hCCcccHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 190 EGEYSGSTEAYGAI-ADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 190 ~~~~~~~~~~~~~l-g~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+..+. ..+...+ .......+|+..|.+.++.......
T Consensus 132 ~~~~~w-~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 132 YGHSAW-YYAFRLLKIQLALQHKDYNAALENLQSIAQLAN 170 (608)
T ss_pred cCchhH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 433332 2223333 2223333799999999999887764
No 211
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0028 Score=50.43 Aligned_cols=99 Identities=22% Similarity=0.241 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG---- 191 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~---- 191 (230)
++....+.|.+.++.|+++.|+.-|+.+++...- .+-.-++++.++++.|+|+.|+++....++..-+.-
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy------qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY------QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCC------CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 5557888999999999999999999999985432 455668999999999999999999887765433210
Q ss_pred --------C------c-----ccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948 192 --------E------Y-----SGSTEAYGAIADCYTELGDLERAARFY 220 (230)
Q Consensus 192 --------~------~-----~~~~~~~~~lg~~y~~~g~~~~A~~~~ 220 (230)
| + +....+.+..+-++.+.|+++.|.+..
T Consensus 217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 0 0 123345566677888999999888754
No 212
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.013 Score=46.78 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELA 147 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~ 147 (230)
.+..+|.+|+...+|..|.++|++.-.+.
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~ 74 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLH 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45566777777777777777666655433
No 213
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.03 E-value=0.021 Score=54.01 Aligned_cols=96 Identities=14% Similarity=0.056 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
++..+...|...|++++|...+.+..+. +.......+..+...|.+.|++++|++.|++.... +- .....
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~-----G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~-~Pdvv 720 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQ-----GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI----KL-RPTVS 720 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCCHH
Confidence 3444555566666666666666655431 11112335556666666666666666666654221 11 12344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYI 224 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al 224 (230)
.|..+...|.+.|++++|.+.|++..
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56666666666666666666666544
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.031 Score=43.91 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
+.+-+..++.-.|.|.-+.+.+++.++. +++..+.....+|.+.++.||-+.|..+|+++-+...+.++-.....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence 5666788888899999999999998883 44556777889999999999999999999988777777777777888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
++.+.+.+|.-.++|.+|...|.+.+..
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhcccc
Confidence 9999999999999999999999887654
No 215
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.0025 Score=51.82 Aligned_cols=86 Identities=24% Similarity=0.286 Sum_probs=65.8
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Q 026948 127 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADC 206 (230)
Q Consensus 127 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 206 (230)
+....+|..|+..++-.+.+ +..........+|.|++..|+|++|+..|+-..+- +...+..+.+++.|
T Consensus 32 fls~rDytGAislLefk~~~-----~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~~el~vnLAcc 100 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNL-----DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAPAELGVNLACC 100 (557)
T ss_pred HHhcccchhHHHHHHHhhcc-----chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCCcccchhHHHH
Confidence 34567888888876655432 33334466778999999999999999999886542 23457889999999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 026948 207 YTELGDLERAARFYDKY 223 (230)
Q Consensus 207 y~~~g~~~~A~~~~~~a 223 (230)
+.-+|.|.+|...-.++
T Consensus 101 ~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 101 KFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999877665
No 216
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.97 E-value=0.024 Score=53.68 Aligned_cols=98 Identities=10% Similarity=0.069 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948 118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 197 (230)
Q Consensus 118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 197 (230)
.++..+...|.+.|++++|...|.+..+. . -.+ ....+..+...+.+.|++++|.+.+++..+.. .....
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~--G--v~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G-----~~pd~ 684 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKK--G--VKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQG-----IKLGT 684 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--C--CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCH
Confidence 35666777788888888888888876651 1 111 24567778888889999999999998865431 23356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
.+|..+...|.+.|++++|...|++..+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7889999999999999999999987754
No 217
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.95 E-value=0.0013 Score=33.04 Aligned_cols=30 Identities=27% Similarity=0.497 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
++.++|.++..+|++++|..++++++++.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 455666666666666666666666665443
No 218
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.95 E-value=0.0025 Score=53.86 Aligned_cols=109 Identities=13% Similarity=0.061 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhCC-
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK----DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISEREGE- 192 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~----~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~-~~~~~~~- 192 (230)
++.-.+..++..||+.+|...+...- +.+..+ ..-....+.+|+|-++++.|.|.-+..+|.+|++ ...+...
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456677888888888887664332 112211 1112444568999999999999999999999995 4444221
Q ss_pred ----------cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 193 ----------YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 193 ----------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.......++|.|..|...|+.-.|.++|.++...+-
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 113456899999999999999999999999988763
No 219
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.94 E-value=0.036 Score=35.00 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
+......|.-++...+.++|+..+.++++- ..+.+..-.++-.+..+|...|+|.+++++-.+=+.+.++.++
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k---~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled 78 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEK---ITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELED 78 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345566777788888999999999998873 3345556677888888899999999999998887777766554
No 220
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.89 E-value=0.028 Score=47.23 Aligned_cols=92 Identities=17% Similarity=0.046 Sum_probs=75.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Q 026948 123 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGA 202 (230)
Q Consensus 123 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 202 (230)
+-..+...++++.|++.+++..+. . +.....++.++...++-.+|++.+.+++... |.....+..
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~------~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~------p~d~~LL~~ 239 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER------D---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN------PQDSELLNL 239 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc------C---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------CCCHHHHHH
Confidence 334455678999999999987762 1 2344568899999999999999999998654 666888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 203 IADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 203 lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
.+..+...++++.|+...+++.+..+.
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~lsP~ 266 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVELSPS 266 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 999999999999999999999987754
No 221
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.88 E-value=0.014 Score=53.06 Aligned_cols=95 Identities=12% Similarity=0.115 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH----------------------------------
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG---------------------------------- 162 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~---------------------------------- 162 (230)
..+++.+...|.+.|++++|+..|.+..+. .... ....+..
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~p---d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSI---DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCC---CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 346777777888888888888877765431 1000 1223334
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 163 -LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 163 -lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
+...|.+.|+.++|.+.|++.. ..+..+|+.+...|...|+.++|++.|++..+
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~---------~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMP---------RKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC---------CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444445555555555554421 11234566677777777777777777776554
No 222
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.85 E-value=0.039 Score=43.44 Aligned_cols=92 Identities=20% Similarity=0.169 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC
Q 026948 132 DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 211 (230)
Q Consensus 132 ~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 211 (230)
.-...++.+.+|...+++.+...........+|.-|+..|+|++|+++|+.+....++.+=......++..+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 45567888999999999887777788888899999999999999999999998887776666667788999999999999
Q ss_pred CHHHHHHHHHHH
Q 026948 212 DLERAARFYDKY 223 (230)
Q Consensus 212 ~~~~A~~~~~~a 223 (230)
+.+..+.+.-+.
T Consensus 233 ~~~~~l~~~leL 244 (247)
T PF11817_consen 233 DVEDYLTTSLEL 244 (247)
T ss_pred CHHHHHHHHHHH
Confidence 999888765443
No 223
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.85 E-value=0.044 Score=43.97 Aligned_cols=91 Identities=22% Similarity=0.288 Sum_probs=69.9
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH----hCCcc----cH
Q 026948 128 LRNQDLEKAFTEFKAALELAQNVK--DPIEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISER----EGEYS----GS 196 (230)
Q Consensus 128 ~~~g~~~~A~~~~~~al~l~~~~~--~~~~~~~~~~~lg~~~~~~~-~~~~Ai~~~~~al~~~~~----~~~~~----~~ 196 (230)
..+||++.|..++.|+-.+..... .....+..+++.|......+ ++++|+.++++|.++... ....+ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 357999999999999988774222 22336778999999999999 999999999999999644 22222 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH
Q 026948 197 TEAYGAIADCYTELGDLERAAR 218 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~~~~A~~ 218 (230)
..++..++.+|...+.++...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHH
Confidence 5678889999999998864444
No 224
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0091 Score=48.12 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=68.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948 142 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 221 (230)
Q Consensus 142 ~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 221 (230)
++++....-+.+...+.-+-.-|+-|+..++|..|+..|.++|+. +..|+...+..|.|.+-|...+|+|..|+....
T Consensus 66 qslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs 143 (390)
T KOG0551|consen 66 QSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCS 143 (390)
T ss_pred HHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444333455557777888899999999999999999999765 456666778899999999999999999999999
Q ss_pred HHHHhh
Q 026948 222 KYISRL 227 (230)
Q Consensus 222 ~al~~~ 227 (230)
+|+.+-
T Consensus 144 ~al~~~ 149 (390)
T KOG0551|consen 144 AALKLK 149 (390)
T ss_pred HHHhcC
Confidence 998754
No 225
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.83 E-value=0.02 Score=38.73 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=69.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----CC-------HHHHHHHHHHHHHHHHHhC
Q 026948 123 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----GK-------YREAIKYHSMVLQISEREG 191 (230)
Q Consensus 123 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----~~-------~~~Ai~~~~~al~~~~~~~ 191 (230)
++..++..||+-+|++..+..+....+..+. ...+..-|.++..+ .+ ...|+++|.++..+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~---~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls---- 74 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS---WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS---- 74 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch---HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC----
Confidence 4667889999999999999988855542222 23444556666543 33 344666666666664
Q ss_pred CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcC
Q 026948 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLESD 230 (230)
Q Consensus 192 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 230 (230)
|..+..++.+|.=+.....|+++..-.+++|.+..+|
T Consensus 75 --p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~pd 111 (111)
T PF04781_consen 75 --PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVTNPD 111 (111)
T ss_pred --hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCCC
Confidence 6668888888888777888899998888888776543
No 226
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.79 E-value=0.055 Score=40.32 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHH
Q 026948 135 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 214 (230)
Q Consensus 135 ~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 214 (230)
+-++.++.-++-+++.........++..+|..|.+.|++++|++.|.++.+.. .......+.+.++-.+....+++.
T Consensus 14 ~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 14 EELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCHH
Confidence 33445556666666666777788999999999999999999999999976653 222346678888999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 026948 215 RAARFYDKYISRLE 228 (230)
Q Consensus 215 ~A~~~~~~al~~~~ 228 (230)
....+..++-...+
T Consensus 91 ~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 91 HVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987664
No 227
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.75 E-value=0.0045 Score=49.92 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=63.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG--KYREAIKYHSMVLQISEREGEYSGST 197 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~--~~~~Ai~~~~~al~~~~~~~~~~~~~ 197 (230)
..-.-.++...++++.|...++...+. .+. ..-.....+.+....| .+.+|...|+...+. .+..+
T Consensus 134 ~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD--~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~------~~~t~ 201 (290)
T PF04733_consen 134 LALAVQILLKMNRPDLAEKELKNMQQI----DED--SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK------FGSTP 201 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHCC----SCC--HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC------S--SH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc----CCc--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc------cCCCH
Confidence 334567888999999998877765432 222 2222233334444444 699999999984322 13456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
..++.++.++..+|+|++|...++++++.-
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 788999999999999999999999987643
No 228
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.71 E-value=0.019 Score=51.02 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948 118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 197 (230)
Q Consensus 118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 197 (230)
..+...|..+...++.++|..+..++-++. +..+..++-.|..+..+|...+|...|..|+.++ |+.+
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld------P~hv 718 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD------PDHV 718 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC------CCCc
Confidence 345577888889999999999999998855 4488899999999999999999999999999996 8888
Q ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHHHh
Q 026948 198 EAYGAIADCYTELGDLERAAR--FYDKYISR 226 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~--~~~~al~~ 226 (230)
.+...+|.++.+.|+..-|.. ....++++
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 999999999999999888877 77777664
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.66 E-value=0.1 Score=38.75 Aligned_cols=104 Identities=23% Similarity=0.236 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGA-SLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~-~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
...+...|..+...+++..++..+.+++...... .......+. ++...|++++|+..+++++.... ....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~ 165 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDP------DLAEALLALGALYELGDYEEALELYEKALELDP---ELNE 165 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---Cccc
Confidence 3456678888888889999999998888744331 222233333 88999999999999999966320 0024
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
....+...+..+...++++.|+..+.+++.....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 166 LAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 5667777788889999999999999999887653
No 230
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.61 E-value=0.0044 Score=31.91 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
+++++|.++...|++++|++.|++.++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 67888888888899999999998887654
No 231
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.61 E-value=0.033 Score=50.62 Aligned_cols=95 Identities=9% Similarity=0.011 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948 118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 197 (230)
Q Consensus 118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 197 (230)
.+++.+...|...|+.++|++.|++..+. . ..+ ....+..+-..+...|+.++|.++|+...+. .+..| ..
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g--~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~---~g~~p-~~ 462 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAE--G--VAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSEN---HRIKP-RA 462 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHh--C--CCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh---cCCCC-Cc
Confidence 46777777888888888888888776542 1 111 1233444555555666666666666554321 11111 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 026948 198 EAYGAIADCYTELGDLERAARFYD 221 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~ 221 (230)
..|..+...|.+.|+.++|.+.++
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHH
Confidence 344445555555555555554444
No 232
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.58 E-value=0.34 Score=40.15 Aligned_cols=94 Identities=18% Similarity=0.177 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
.+..-+..-.++||++.+-.+..++-+..++ + .-......+.....+|+++.|..-..+.++.. |....
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~--~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~------pr~~~ 188 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGD--D---TLAVELTRARLLLNRRDYPAARENVDQLLEMT------PRHPE 188 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCC--c---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC------cCChH
Confidence 4445556677889999999999998885332 1 33455667788889999999999999998886 77889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 199 AYGAIADCYTELGDLERAARFYDKY 223 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~a 223 (230)
+..-.-.+|...|++........+.
T Consensus 189 vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 189 VLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999888776654
No 233
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.56 E-value=0.026 Score=49.60 Aligned_cols=95 Identities=17% Similarity=0.054 Sum_probs=75.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEA 199 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 199 (230)
++.-+..-..+++.++|+..++++++.++. ....+.-+|.++-++++.+.|.+.|...++.. |.....
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c------P~~ipL 721 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSFPD------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKC------PNSIPL 721 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhCCc------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccC------CCCchH
Confidence 444455566678888999888888886555 77788889999999999999999999888876 777778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 200 YGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
|..++.+-+..|+.-+|...++++.-.
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 888888888888888888888877543
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.53 E-value=0.021 Score=49.33 Aligned_cols=88 Identities=19% Similarity=0.121 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Q 026948 130 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 209 (230)
Q Consensus 130 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 209 (230)
..+.+.|.+......+.+|+ ....+...|.++...|+.++|++.|++++....+ -..-..-+++.+|.++..
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~------s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPN------SALFLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMF 317 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHH
Confidence 34566677777777765544 6677889999999999999999999998853322 123345679999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 026948 210 LGDLERAARFYDKYIS 225 (230)
Q Consensus 210 ~g~~~~A~~~~~~al~ 225 (230)
+.+|++|..++.+..+
T Consensus 318 ~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 318 QHDWEEAAEYFLRLLK 333 (468)
T ss_pred HchHHHHHHHHHHHHh
Confidence 9999999999998776
No 235
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.11 Score=44.34 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Q 026948 114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY 193 (230)
Q Consensus 114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 193 (230)
..++..++..|...+.++++.+|.....+.++.++.-+.....+-.+.-+|.+....|+..++.+...-++++.++..|.
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di 521 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI 521 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc
Confidence 34555777888888999999999999999999986655555566778889999999999999999999999999999998
Q ss_pred ccHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Q 026948 194 SGSTEAYGAIADCYTELGD--LERAARFYDK 222 (230)
Q Consensus 194 ~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~ 222 (230)
+-.-.+.--+-..|...|+ -+.+.+.|.+
T Consensus 522 ~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 522 PVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 8777777777888888888 5555554443
No 236
>PLN03077 Protein ECB2; Provisional
Probab=96.38 E-value=0.069 Score=49.75 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
+..+++.+...|...|+.++|++.|++..+. . ..+ ....+..+-..+.+.|+.++|.++|+...+. .+..|
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g--~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~---~gi~P- 623 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVES--G--VNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEK---YSITP- 623 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--C--CCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHH---hCCCC-
Confidence 3446778888888999999999999886652 1 111 2234555556788889999999999885422 22223
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKY 223 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~a 223 (230)
....|..+...+.+.|++++|.+.+++.
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3567888899999999999999888764
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.36 E-value=0.1 Score=44.53 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHHHHhcC-------------------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948 132 DLEKAFTEFKAALELAQNVK-------------------DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 132 ~~~~A~~~~~~al~l~~~~~-------------------~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
...+|.++|+++++..+..- +......+...++.+..+.|+.++|++.++..++...
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p---- 290 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP---- 290 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----
Confidence 46777788888887665321 1111244567899999999999999999999876541
Q ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 193 YSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
..+...++.++-.++..++.|.++.....+.-+
T Consensus 291 ~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 291 NLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred ccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 124567899999999999999999888777644
No 238
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.086 Score=42.04 Aligned_cols=85 Identities=24% Similarity=0.184 Sum_probs=65.7
Q ss_pred HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026948 81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN---QDLEKAFTEFKAALELAQNVKDPIEEK 157 (230)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~A~~~~~~al~l~~~~~~~~~~~ 157 (230)
.+...+...|.++....++ +...+..+|.+++.+ ....++...+++++++.+. +.
T Consensus 170 ~~~~~A~~AY~~A~rL~g~----------------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~------~i 227 (287)
T COG4235 170 GRASDALLAYRNALRLAGD----------------NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA------NI 227 (287)
T ss_pred cchhHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc------cH
Confidence 3566777777888877765 333455566665543 3467888899999995444 88
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
++.+.||..++..|+|.+|+..++.-++..
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999988775
No 239
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.30 E-value=0.016 Score=31.30 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQISER 189 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~ 189 (230)
.++..||.+....++|++|+..|++++++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777544
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.29 E-value=0.15 Score=36.41 Aligned_cols=70 Identities=23% Similarity=0.219 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCcc
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER-EGEYS 194 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~ 194 (230)
+...++..+...|++++|+..+.+++...+- ...++..+-.++...|++.+|++.|++..+...+ .+..|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~------~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY------DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 4456777888999999999999999996554 7788899999999999999999999999776654 34444
No 241
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.25 E-value=0.33 Score=36.39 Aligned_cols=118 Identities=18% Similarity=0.202 Sum_probs=85.4
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
+..++...|++++.-.-. .+...++.+++..+..+++..|...+++..+..+... .+....
T Consensus 104 r~~EA~~hy~qalsG~fA---------------~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r----~pd~~L 164 (251)
T COG4700 104 RYHEAVPHYQQALSGIFA---------------HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR----SPDGHL 164 (251)
T ss_pred hhhhhHHHHHHHhccccC---------------CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC----CCCchH
Confidence 445555566666654332 1444788999999999999999999988777443211 233445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
.+|.++-.+|.+.+|...|+.++... |+ +.+....+.-..++|+.++|..-|....+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y------pg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY------PG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC------CC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 67888999999999999999999885 43 45666678888899988888877765544
No 242
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.039 Score=42.84 Aligned_cols=116 Identities=12% Similarity=0.010 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCc-----cHHHHHHHHHHHHHHHhCCCHHHHH
Q 026948 63 RRGELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDP-----KKEELLSRLKTGKNFLRNQDLEKAF 137 (230)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~g~~~~A~ 137 (230)
+......+.++++.++...++.++...|+.++....+- .-++...++ +....-.+++...++...|+|-+++
T Consensus 174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L---~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevl 250 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNL---QLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVL 250 (329)
T ss_pred hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHH---HhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHH
Confidence 33444567888999999999999999999888765431 000101111 1222335668899999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 138 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 138 ~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
++....+.. .+.+..+|+..|.++...=+.++|...|.+++++.
T Consensus 251 eh~seiL~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 251 EHCSEILRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHHHhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 999999984 44488999999999999999999999999999986
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.17 Score=41.30 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=68.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 026948 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 201 (230)
Q Consensus 122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 201 (230)
..+..+...|-|++|.....+++++.+. .+++....+.++.-.+++.++.+...+.-..=++ ........|.
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s~mlasHNyW 251 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRF------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--SWMLASHNYW 251 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCc------chHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--hhHHHhhhhH
Confidence 4566677888899999888888886544 6778888888888889999888888774332211 1122344566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 026948 202 AIADCYTELGDLERAARFYDKY 223 (230)
Q Consensus 202 ~lg~~y~~~g~~~~A~~~~~~a 223 (230)
.-+.++.+-++|+.|.+.|++-
T Consensus 252 H~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 252 HTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHhhhcccchhHHHHHHHHH
Confidence 6788888889999999988654
No 244
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.21 E-value=0.03 Score=44.99 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=26.0
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 160 ARGLGASLQR-QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 160 ~~~lg~~~~~-~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
|...|..-+. .++.+.|...|+.+++.. +.....|..-..-....|+.++|...|++++.
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f------~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKF------PSDPDFWLEYLDFLIKLNDINNARALFERAIS 98 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3333444333 334444555555555443 33333444444444455555555555555543
No 245
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.16 E-value=0.012 Score=31.78 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
++|..+|.+-...++|++|+..|++++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999764
No 246
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.087 Score=46.28 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=81.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 026948 121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 200 (230)
Q Consensus 121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 200 (230)
.+-|...++..+|..++++|...+...+.-......+....++..||....+.|.|.++++.|-+.. |..+-.-
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------~~~~l~q 431 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------RQSPLCQ 431 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc------cccHHHH
Confidence 3567778889999999999999998777644455568889999999999999999999999997775 4455555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 201 GAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 201 ~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
..+-.+....|+-++|+....+...+..
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 6666667788888999988887766553
No 247
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.03 E-value=0.009 Score=50.35 Aligned_cols=111 Identities=14% Similarity=0.201 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948 70 VNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 149 (230)
Q Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 149 (230)
+..++........+..++..|.++++..++ .+...-+++..+...++|..|+....+++++.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpn----------------ca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-- 68 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPN----------------CAIYFANRALAHLKVESFGGALHDALKAIELD-- 68 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCc----------------ceeeechhhhhheeechhhhHHHHHHhhhhcC--
Confidence 344455555556778888899999988875 22233356778889999999999999999954
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 026948 150 VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 208 (230)
Q Consensus 150 ~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 208 (230)
+....+|+..|.++...+.+.+|...|++...+. |....+...+..|-.
T Consensus 69 ----P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~------Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 69 ----PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLA------PNDPDATRKIDECNK 117 (476)
T ss_pred ----chhhheeeeccHHHHhHHHHHHHHHHHHHhhhcC------cCcHHHHHHHHHHHH
Confidence 4488999999999999999999999999998876 777777777766643
No 248
>PRK10941 hypothetical protein; Provisional
Probab=95.98 E-value=0.081 Score=42.13 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 152 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 152 ~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
+.....+.+.++=.++.+.++++.|+.+.+..+.+. |+.+.-+...|.+|.++|.+..|...++..++..++
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~------P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFD------PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 445567788999999999999999999999999986 777888999999999999999999999998886654
No 249
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.24 Score=39.03 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=63.7
Q ss_pred HHHHHHHHHHh--C--CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948 119 SRLKTGKNFLR--N--QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 194 (230)
Q Consensus 119 ~~~~~g~~~~~--~--g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 194 (230)
++..+|..+.. . +.+.+|.-.|++.-+ + .+..+..+.+.+.++..+|+|++|...++.++.-. +
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~---k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd------~ 238 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE---K---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD------A 238 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc---c---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc------C
Confidence 34445554432 2 346666666665433 2 22356678899999999999999999999997654 6
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948 195 GSTEAYGAIADCYTELGDLERAARFY 220 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~A~~~~ 220 (230)
..++++.|+-.+-...|.-.++..-+
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 67899999998888888876665544
No 250
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.92 E-value=0.4 Score=43.72 Aligned_cols=107 Identities=20% Similarity=0.241 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----HHHhcCChHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALE----LAQNVKDPIE----------EKKAARGLGASLQRQGKYREAIKYHSMVL 184 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~----l~~~~~~~~~----------~~~~~~~lg~~~~~~~~~~~Ai~~~~~al 184 (230)
++++.|.-+...++.+.|+++|+++-. +..-..+.+. ....+..-|...-..|+.+-|+.+|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 677788888888999999999987642 1111111111 12345666778888999999999998765
Q ss_pred HHHHH---------------hCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 185 QISER---------------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 185 ~~~~~---------------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
+.... .....++-.+.+.+|+-|+..|+..+|+..|.+|-.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 43322 011233345677799999999999999999998754
No 251
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.90 E-value=0.013 Score=29.11 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
.++..+|.++...+++++|+.++++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 357788999999999999999999988763
No 252
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.85 E-value=0.084 Score=30.81 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
.+++.++..+.+.|+|++|.++.+.++++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 467888999999999999999999999885
No 253
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.82 E-value=0.063 Score=47.42 Aligned_cols=101 Identities=24% Similarity=0.270 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc----C-CHHHHHHHHHHHHH
Q 026948 116 ELLSRLKTGKNFLRN-----QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ----G-KYREAIKYHSMVLQ 185 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~----~-~~~~Ai~~~~~al~ 185 (230)
.+.+...+|.+|..- .|.++|+.++..+.+-.++. .......+.+.+|.+|.+. . ++..|+.+|.++-+
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~-a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA-ATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH-HhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 445566777777643 68999999999887721110 0111344678888888874 3 77889999988855
Q ss_pred HHHHhCCcccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 026948 186 ISEREGEYSGSTEAYGAIADCYTELG---DLERAARFYDKYIS 225 (230)
Q Consensus 186 ~~~~~~~~~~~~~~~~~lg~~y~~~g---~~~~A~~~~~~al~ 225 (230)
. +.+++.+.+|.+|..-. |+.+|.++|..|..
T Consensus 322 ~--------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 322 L--------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred c--------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 4 35678888999887665 67789988888864
No 254
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.70 E-value=0.41 Score=32.99 Aligned_cols=107 Identities=13% Similarity=0.081 Sum_probs=71.6
Q ss_pred HHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC---ChH--
Q 026948 80 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK---DPI-- 154 (230)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---~~~-- 154 (230)
...++.+..+++++.+.... ++..+ ..+.+--++..+-.++..+..+|+|++++..-.+++..+++.+ ...
T Consensus 22 ~g~~~eAa~s~r~AM~~srt---iP~eE-aFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk 97 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRT---IPAEE-AFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK 97 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTT---S-TTS----HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH
T ss_pred hhhHHHHHHHHHHHHHHhcc---CChHh-hcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch
Confidence 34566666777777766543 11111 1122333555666888999999999999999999999988643 222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 026948 155 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISERE 190 (230)
Q Consensus 155 ~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~ 190 (230)
.-..+-++.+..+-..|+.++|+..|+.+-++....
T Consensus 98 lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 98 LWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 234457888899999999999999999998876543
No 255
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.68 E-value=0.029 Score=48.70 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=77.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Q 026948 124 GKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAI 203 (230)
Q Consensus 124 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 203 (230)
|..+...|+...|+.++..|+-..+.- .-....+|+++....|....|-..+.+++.+. ...+-.++.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~-----~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~------~sepl~~~~~ 682 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQ-----QDVPLVNLANLLIHYGLHLDATKLLLQALAIN------SSEPLTFLSL 682 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhh-----hcccHHHHHHHHHHhhhhccHHHHHHHHHhhc------ccCchHHHhc
Confidence 444567899999999999999844331 22347789999999999999999999999986 3445678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 204 ADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 204 g~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
|..|..+.+.++|++.+++|++...
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCC
Confidence 9999999999999999999998654
No 256
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.63 E-value=0.31 Score=38.35 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183 (230)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a 183 (230)
.+........+|..|+..|++++|+.+++.+...+.+-+........+..+-.|+...|+.+..+.+.-+.
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44455566689999999999999999999999988887888888889999999999999999888776553
No 257
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.60 E-value=0.056 Score=50.23 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=74.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 026948 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 201 (230)
Q Consensus 122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 201 (230)
.....+...+.|++|+..|++.. .+.++......+.+.+|.....+-.-..--+.|.+|+......-+.+.-+--|.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIR---ESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYL 556 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHh---hcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHH
Confidence 34455666777888888887744 456666677788888888877643222222455555555555556677677788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 202 AIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 202 ~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
..|.+|..+|+|++-+++|..|++.+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYS 583 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 899999999999999999999998764
No 258
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.54 E-value=0.99 Score=36.24 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=72.8
Q ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948 119 SRLKTGKNFLR-NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 197 (230)
Q Consensus 119 ~~~~~g~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 197 (230)
.+...|..-+. .++.+.|...|+.+++.++. ...........+...++.+.|...|++++... .......
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l---~~~~~~~ 107 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPS------DPDFWLEYLDFLIKLNDINNARALFERAISSL---PKEKQSK 107 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS---SCHHHCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---CchhHHH
Confidence 45566777455 67777799999999997766 34444444566778999999999999997653 1111134
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
..|......-...|+.+.....++++.+.++.
T Consensus 108 ~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 108 KIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 57777888888999999999999999887754
No 259
>PLN03077 Protein ECB2; Provisional
Probab=95.52 E-value=0.15 Score=47.55 Aligned_cols=98 Identities=11% Similarity=0.022 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---------------cC---------------ChHHHHHHHHHHHHHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN---------------VK---------------DPIEEKKAARGLGASLQ 168 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---------------~~---------------~~~~~~~~~~~lg~~~~ 168 (230)
++..+...|.+.|++++|+..|.+..+..-. .+ +.......+..+-..|.
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 5666777788888888888887765431100 00 00011223445556677
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 169 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 169 ~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
+.|++++|.+.|++.. .....+|..+...|...|+.++|+..|++...
T Consensus 436 k~g~~~~A~~vf~~m~---------~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 436 KCKCIDKALEVFHNIP---------EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HcCCHHHHHHHHHhCC---------CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777777777776521 11234677777777777777777777777654
No 260
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.40 E-value=0.38 Score=43.86 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=72.7
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
++..++....+.+...|+ ...+....|.++.++|+.++|..+++ ++..-+. + .-..+.
T Consensus 24 qfkkal~~~~kllkk~Pn----------------~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~--~---D~~tLq 81 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPN----------------ALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKG--T---DDLTLQ 81 (932)
T ss_pred HHHHHHHHHHHHHHHCCC----------------cHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCC--C---chHHHH
Confidence 344455555555666665 34456667889999999999995544 3332222 1 345667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHH
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 217 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 217 (230)
-+-.+|.+++++++|...|++++... |+ .+..+.+=.+|.+.++|.+=.
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~------P~-eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQKY------PS-EELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhC------Cc-HHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999998775 55 556666666777777775433
No 261
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.37 E-value=0.34 Score=30.69 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 160 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
...-|.-++.+.+.++|+..++++++-. .+.++...++-.+..+|...|+|++.+.+--+=+++.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~---~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKI---TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555668899999999999997664 34456677788888999999999999999877666654
No 262
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.31 E-value=0.27 Score=41.30 Aligned_cols=104 Identities=18% Similarity=0.070 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC---C---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK---D---------PIEEKKAARGLGASLQRQGKYREAIKYHSMV 183 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---~---------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a 183 (230)
...+.+.-|..++++++|..|.--|.-++++..+.. . ......+...+..||.+.++.+-|+..-.++
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence 444566678888999999999999999999886521 1 1112345677899999999999999999999
Q ss_pred HHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 184 LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
|.+. |....-+..-|.|+..+.+|.+|...+.-+.-
T Consensus 255 I~ln------P~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 255 INLN------PSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hhcC------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886 77788888899999999999999887665543
No 263
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.27 E-value=0.26 Score=44.82 Aligned_cols=87 Identities=18% Similarity=0.326 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHhCCccc----------HHHHHHHHHH
Q 026948 140 FKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV----LQISEREGEYSG----------STEAYGAIAD 205 (230)
Q Consensus 140 ~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a----l~~~~~~~~~~~----------~~~~~~~lg~ 205 (230)
+.+|+++++. .|.......|++.+.-+...+|-+.|++||+|+ .++.+-..+.|. ....|.-.|.
T Consensus 842 w~eA~eiAE~-~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq 920 (1416)
T KOG3617|consen 842 WSEAFEIAET-KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ 920 (1416)
T ss_pred HHHHHHHHhh-ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH
Confidence 3344444433 355556778999999999999999999999986 333333333332 2345555799
Q ss_pred HHHHcCCHHHHHHHHHHHHHhh
Q 026948 206 CYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 206 ~y~~~g~~~~A~~~~~~al~~~ 227 (230)
..+..|+.+.|+.+|..|-+.+
T Consensus 921 YlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 921 YLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred HHhcccchHHHHHHHHHhhhhh
Confidence 9999999999999999998765
No 264
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=0.7 Score=36.51 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=45.1
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 159 AARGLGASLQR----QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 159 ~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+..|+..+.. .+.+.+|.-+|+.- .++ .+..+.....++.|...+|+|++|....+.+++...
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~---s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEEL---SEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHH---hcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 34445555443 34567777777663 221 244677889999999999999999999999997543
No 265
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.21 E-value=0.067 Score=31.22 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
++++.+|..+.++|+|++|..+.+.++++-+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 5788899999999999999999999998654
No 266
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.19 E-value=0.089 Score=47.73 Aligned_cols=90 Identities=24% Similarity=0.272 Sum_probs=67.5
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Q 026948 128 LRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY 207 (230)
Q Consensus 128 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 207 (230)
...++|.+|.....+.++-.++ ...+...-|.++.++|++++|..+++. +... .+.+-..+-.+-.||
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn------~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~-----~~~D~~tLq~l~~~y 87 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPN------ALYAKVLKALSLFRLGKGDEALKLLEA-LYGL-----KGTDDLTLQFLQNVY 87 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHhcCchhHHHHHhh-hccC-----CCCchHHHHHHHHHH
Confidence 3457888888888887774333 445555667789999999999966654 3322 123456788899999
Q ss_pred HHcCCHHHHHHHHHHHHHhhhc
Q 026948 208 TELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~~~ 229 (230)
..+|++++|...|++++..+++
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHhhhhHHHHHHHHHHhhCCc
Confidence 9999999999999999987653
No 267
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.19 E-value=0.014 Score=47.23 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=66.2
Q ss_pred HHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026948 81 LRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAA 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~ 160 (230)
+..+.+++.+..++...+. .+..+-.+|.++..+++...|+..+..++++.+. ....|
T Consensus 128 G~~~~ai~~~t~ai~lnp~----------------~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D------sa~~y 185 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPP----------------LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD------SAKGY 185 (377)
T ss_pred cchhhhhcccccccccCCc----------------hhhhcccccceeeeccCCchhhhhhhhhhccCcc------ccccc
Confidence 3456666666666665554 3445557899999999999999999999995443 66667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 161 RGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
-..|...+.+|++.+|-+++..+.++.
T Consensus 186 kfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 186 KFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred chhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 778888899999999999999998774
No 268
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=1.7 Score=38.58 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 157 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
...+++-+.-+++.++|..|+++|+.++........+...+....+++.||..+.+.|+|.++++.|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 3457777888899999999999999999887655555566888999999999999999999999998653
No 269
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=1.4 Score=35.32 Aligned_cols=133 Identities=13% Similarity=0.109 Sum_probs=86.6
Q ss_pred HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948 83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 162 (230)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 162 (230)
.+..+..+.+.+..... .+.....+.+..++|..|.+.++-+.+.++..+.++-+-..+-+.+.--+-..
T Consensus 91 neeki~Elde~i~~~ee----------dngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiR 160 (412)
T COG5187 91 NEEKIEELDERIREKEE----------DNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIR 160 (412)
T ss_pred hHHHHHHHHHHHHHHhh----------cccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 34455555555554443 12244567788899999999999999999999988877777776666667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
+|.+|..+.=.++.++... .+.++.+|=......-...|.-.....++.+|...+-..+..++
T Consensus 161 lg~~y~d~~vV~e~lE~~~---~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 161 LGLIYGDRKVVEESLEVAD---DIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHhhccHHHHHHHHHHHH---HHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 8888866655555444433 35555554332233333346666677788888887776665543
No 270
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.99 Score=38.72 Aligned_cols=106 Identities=15% Similarity=0.063 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Q 026948 113 KKEELLSRLKTGKNFL-RNQDLEKAFTEFKAALELAQNVKDP-IEEKKAARGLGASLQRQG-KYREAIKYHSMVLQISER 189 (230)
Q Consensus 113 ~~~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~-~~~~~~~~~lg~~~~~~~-~~~~Ai~~~~~al~~~~~ 189 (230)
...++.+.+.+|.+.+ ...|.+.|..+++++..+.+.++.. ...-.++.-++.+|.... .+..|...+++++++...
T Consensus 42 ~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~ 121 (629)
T KOG2300|consen 42 FLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQS 121 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcC
Confidence 3457778889998754 5799999999999999999887755 446667888899988876 889999999999998743
Q ss_pred hCCcccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948 190 EGEYSGSTEAYGAIADCYTELGDLERAARFY 220 (230)
Q Consensus 190 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 220 (230)
.+ -........++..+.-..|+..|.+..
T Consensus 122 ~p--~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 122 VP--YWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred Cc--hhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 22 355667788999999999999998764
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.92 E-value=0.49 Score=38.86 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHh-
Q 026948 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-ISERE- 190 (230)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~-~~~~~- 190 (230)
.......++..+.+.+..|+++.|...+.++......... ..+......+......|+..+|+..++..++ .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~--~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES--LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 3445667889999999999999999999887774432111 1455667778889999999999999998887 22211
Q ss_pred --------------------------CCcccHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhhh
Q 026948 191 --------------------------GEYSGSTEAYGAIADCYTEL------GDLERAARFYDKYISRLE 228 (230)
Q Consensus 191 --------------------------~~~~~~~~~~~~lg~~y~~~------g~~~~A~~~~~~al~~~~ 228 (230)
......+.++..+|.-.... ++.+++...|+++.++.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 11234556777788887777 888999999999987654
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=0.8 Score=34.48 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 114 KEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 114 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
.-...+...+|.+..++|.+|+|+..+... .+....+..-.-.|+++...|+-++|...|++++...
T Consensus 123 ~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-------~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 123 NLKALAALRLARVQLQQKKADAALKTLDTI-------KEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-------ccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 334456668999999999999888765432 2444455556678999999999999999999998874
No 273
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.83 E-value=0.24 Score=43.78 Aligned_cols=93 Identities=29% Similarity=0.400 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHh
Q 026948 119 SRLKTGKNFLRNQ-----DLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG---KYREAIKYHSMVLQISERE 190 (230)
Q Consensus 119 ~~~~~g~~~~~~g-----~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~Ai~~~~~al~~~~~~ 190 (230)
+.+.+|.+|.... +++.|..+|.++-..- .+.+.+.+|.++.... |+..|.++|..|.+
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~----- 356 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK----- 356 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-----
Confidence 4667888888743 7788999998887732 5577889998887655 68899999999854
Q ss_pred CCcccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q 026948 191 GEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISRL 227 (230)
Q Consensus 191 ~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~~ 227 (230)
.+...+.+++|.||.. .-+.+.|..+|.++-+.-
T Consensus 357 ---~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 357 ---AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred ---cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 4467899999999874 358899999999987653
No 274
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.66 E-value=0.9 Score=41.10 Aligned_cols=99 Identities=18% Similarity=0.283 Sum_probs=59.2
Q ss_pred HHHHHHHhCCCHHHHHHHH-------------------HHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948 122 KTGKNFLRNQDLEKAFTEF-------------------KAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 182 (230)
Q Consensus 122 ~~g~~~~~~g~~~~A~~~~-------------------~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~ 182 (230)
..|.-+.+.|+++.|+.+| .+++.+.+++.+.......|-.++.-|...|+|+-|.+.|.+
T Consensus 711 ~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 711 AWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh
Confidence 3455556667777776654 344445554444444444455567777777777777766543
Q ss_pred H------H-------------HHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948 183 V------L-------------QISEREGEYSGSTEAYGAIADCYTELGDLERAARFY 220 (230)
Q Consensus 183 a------l-------------~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 220 (230)
+ + ++..+--.+......|...+.-..+.|+|.+|...|
T Consensus 791 ~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 791 ADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred cchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 2 2 222222233445566777777788888888877665
No 275
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.61 E-value=0.055 Score=26.36 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 026948 199 AYGAIADCYTELGDLERAARFYD 221 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~ 221 (230)
+..++|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555555443
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.58 E-value=1.9 Score=34.52 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh---c-----CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 115 EELLSRLKTGKNFLRNQ-DLEKAFTEFKAALELAQN---V-----KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 185 (230)
Q Consensus 115 ~~~~~~~~~g~~~~~~g-~~~~A~~~~~~al~l~~~---~-----~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~ 185 (230)
.-+..+++.|......+ +++.|..+++++.++.+. . +.......++..++.++...+.++...+ ..++++
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~ 111 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHH
Confidence 34557889999999999 999999999999999633 1 1223456779999999999998875555 333444
Q ss_pred HHHH-hCCcccHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 186 ISER-EGEYSGSTEAY-GAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 186 ~~~~-~~~~~~~~~~~-~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
..+. .+++ +..+ ..+-.+.. .++.+.+.+.+.+++.-.
T Consensus 112 ~l~~e~~~~---~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 112 LLESEYGNK---PEVFLLKLEILLK-SFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHhCCCC---cHHHHHHHHHHhc-cCChhHHHHHHHHHHHhc
Confidence 3322 2332 3333 33333333 788888888888877644
No 277
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.56 E-value=0.057 Score=26.30 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 026948 158 KAARGLGASLQRQGKYREAIKYHS 181 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~ 181 (230)
.+..++|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677777777777777777664
No 278
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=94.53 E-value=1.7 Score=34.50 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCCcccHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYR-EAIKYHSMVLQISEREGEYSGST 197 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~-~Ai~~~~~al~~~~~~~~~~~~~ 197 (230)
.++.=+..+.+.|++..|.+...-.++.+.+.+...... ....+..+......-+ +-.+..+++++..+....+.+.+
T Consensus 12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp 90 (260)
T PF04190_consen 12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence 444556778888999999998877777777654443322 3356666666554333 46677788888885555566889
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 026948 198 EAYGAIADCYTELGDLERAARFYD 221 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~ 221 (230)
..+..+|..|.+.|++.+|..+|-
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH
Confidence 999999999999999999998874
No 279
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.46 E-value=0.84 Score=36.62 Aligned_cols=96 Identities=20% Similarity=0.224 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHH
Q 026948 118 LSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQG-------KYREAIKYHSMVLQI 186 (230)
Q Consensus 118 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~-------~~~~Ai~~~~~al~~ 186 (230)
.+.+.+|..|.. ..+..+|..+|.++.+.-.. . ...+...+|..|..-. +...|+.+|.++-..
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~----~-a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV----E-AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh----h-HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 367778888876 45899999999999883211 1 1445777887776642 333788888887554
Q ss_pred HHHhCCcccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 026948 187 SEREGEYSGSTEAYGAIADCYTE----LGDLERAARFYDKYISR 226 (230)
Q Consensus 187 ~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~~ 226 (230)
. ...+..++|.+|.. ..++++|..+|+++-+.
T Consensus 185 ~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 185 G--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred c--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 3 57889999988865 45899999999998763
No 280
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.92 Score=37.97 Aligned_cols=108 Identities=11% Similarity=-0.043 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
.++.+...|-..|+...-...+...+..+.-..+....+...+.+-..|..-+.|++|-+.-.++.-- ........+.
T Consensus 171 ~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~p--e~~snne~AR 248 (493)
T KOG2581|consen 171 LYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYP--EAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCc--cccccHHHHH
Confidence 45566667777777666555666666555544466666667777777888888888887776665311 1111124556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
..+.+|.+..-+++|..|.+++-+|+...+
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 677788888888888888888888877654
No 281
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.37 E-value=1.7 Score=37.30 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=50.8
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Q 026948 129 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYT 208 (230)
Q Consensus 129 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 208 (230)
+.+++|.+...|++.+. ..+..+.+....|..-..+|+.+.|...|+-|+.-.. .+.| .-.|-..-+--.
T Consensus 449 qL~efDRcRkLYEkfle------~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~--ldmp--ellwkaYIdFEi 518 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLE------FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA--LDMP--ELLWKAYIDFEI 518 (677)
T ss_pred HHhhHHHHHHHHHHHHh------cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc--cccH--HHHHHHhhhhhh
Confidence 44566666666666666 4444666666666666677777777777766654321 1111 112222233344
Q ss_pred HcCCHHHHHHHHHHHHHhhh
Q 026948 209 ELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~~ 228 (230)
..|++++|...|++.|+..+
T Consensus 519 ~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred hcchHHHHHHHHHHHHHhcc
Confidence 56677777777777666543
No 282
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.33 E-value=1.5 Score=41.88 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=94.6
Q ss_pred CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh-c-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026948 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN-V-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 188 (230)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~-~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~ 188 (230)
-+.......+-+++...+..++...|...+.+++.+..- . .+.+.......+++.++...++++.|+++.+.|++..+
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 344556667778888888888999999988888876542 1 24555666778999999999999999999999999777
Q ss_pred HhCC--cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 189 REGE--YSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 189 ~~~~--~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.... ......++..+++.+..++++..|....+....++.
T Consensus 1089 ~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1089 KVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 6443 335677899999999999999999999998888764
No 283
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.31 E-value=0.28 Score=37.05 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHH
Q 026948 155 EEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARF 219 (230)
Q Consensus 155 ~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 219 (230)
..+...+.+|..|. ..|.++|+..+.+++++.... ..-+++.+..|+.+|..+|++++|--+
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD--DNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 35677888886665 669999999999999987432 244688999999999999999998643
No 284
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.27 E-value=0.12 Score=41.53 Aligned_cols=79 Identities=29% Similarity=0.284 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948 115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 194 (230)
Q Consensus 115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 194 (230)
.++......+.-....|+.++|...|+-|+.+++. .+.++..+|...-.-++.-+|-.+|-+|+.+. |
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis------P 181 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT------NPQILIEMGQFREMHNEIVEADQCYVKALTIS------P 181 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC------CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC------C
Confidence 45556667777788899999999999999998877 78889999999888899999999999999885 7
Q ss_pred cHHHHHHHHHH
Q 026948 195 GSTEAYGAIAD 205 (230)
Q Consensus 195 ~~~~~~~~lg~ 205 (230)
+...++.|.++
T Consensus 182 ~nseALvnR~R 192 (472)
T KOG3824|consen 182 GNSEALVNRAR 192 (472)
T ss_pred CchHHHhhhhc
Confidence 77777766544
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.24 E-value=1.4 Score=32.13 Aligned_cols=87 Identities=18% Similarity=0.069 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
-+..+......-...++.+++...+....-+.++ ....-..-|..+...|++.+|+..++....- .+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~------~~~ 76 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE------FPELDLFDGWLHIVRGDWDDALRLLRELEER------APG 76 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc------CCC
Confidence 4445667777777888999888887765555455 5666677889999999999999999996332 355
Q ss_pred HHHHHHHHHHHHHHcCCHH
Q 026948 196 STEAYGAIADCYTELGDLE 214 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~ 214 (230)
.+.+--.++.|+..+||.+
T Consensus 77 ~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 77 FPYAKALLALCLYALGDPS 95 (160)
T ss_pred ChHHHHHHHHHHHHcCChH
Confidence 6667777888888888864
No 286
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=94.21 E-value=0.097 Score=43.98 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 197 TEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
...++.+|.+|.-+++|.+|+..|...+-
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555443
No 287
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.14 E-value=0.36 Score=39.42 Aligned_cols=109 Identities=17% Similarity=0.054 Sum_probs=74.2
Q ss_pred ccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 107 EVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 107 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
+...++-+.+..++..--..++.+|+.+.....+++.+.-- ..+.+-.....--++......|-|++|.+.-++++++
T Consensus 127 dklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi 204 (491)
T KOG2610|consen 127 DKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI 204 (491)
T ss_pred HHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC
Confidence 34455666666666666677777888877777777755421 2233333333333566677888888888888888888
Q ss_pred HHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 223 (230)
Q Consensus 187 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 223 (230)
. +....+.+..+.+.+-.|+++++.+...+-
T Consensus 205 N------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 205 N------RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred C------CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 6 666777788888888888888888876654
No 288
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.11 E-value=1.2 Score=35.60 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
...++..+...+...|+++.+++.+++.+... |.....|..+-.+|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 56778899999999999999999999998885 888889999999999999999999999987664
No 289
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.97 E-value=1.5 Score=37.73 Aligned_cols=118 Identities=20% Similarity=0.177 Sum_probs=89.5
Q ss_pred HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948 83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 162 (230)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 162 (230)
.+..-..|+..+...|.. .=.-+..++.-|..-..+.+.+.|...+..|+-.+++ +. ..-.
T Consensus 382 ~ertr~vyq~~l~lIPHk------------kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK--~K-----lFk~ 442 (677)
T KOG1915|consen 382 VERTRQVYQACLDLIPHK------------KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK--DK-----LFKG 442 (677)
T ss_pred HHHHHHHHHHHHhhcCcc------------cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc--hh-----HHHH
Confidence 344455688888888862 1112335666677777889999999999999886665 22 2222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
.-..-.+.++++.....|++.+... |....+|...|..-..+|+.+.|...|+-|++
T Consensus 443 YIelElqL~efDRcRkLYEkfle~~------Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEFS------PENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC------hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 2234557789999999999999885 88889999999999999999999999998876
No 290
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.93 E-value=1.8 Score=41.87 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
.|...|..++.+.+-+.|-..+.+|++..++ ..+.......+..-++.|+.+.+...|+-.+.-+ |...+
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay------PKRtD 1635 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY------PKRTD 1635 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC------ccchh
Confidence 4445555555555555555555555554433 2233344445555566666666666666555443 55556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
.|.-..+.-.+.|+.+.++..|++++.
T Consensus 1636 lW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1636 LWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 666666666677777777777777765
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.90 E-value=1.9 Score=31.96 Aligned_cols=103 Identities=15% Similarity=0.162 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
.+.+.+..|.+..+.|+...|+.+|.++-.-.+. +....-.+...-+..+...|-|++-..-.+. +. .+..|.
T Consensus 93 pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~--P~~~rd~ARlraa~lLvD~gsy~dV~srvep---La--~d~n~m 165 (221)
T COG4649 93 PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI--PQIGRDLARLRAAYLLVDNGSYDDVSSRVEP---LA--GDGNPM 165 (221)
T ss_pred hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC--cchhhHHHHHHHHHHHhccccHHHHHHHhhh---cc--CCCChh
Confidence 3447778899999999999999999886652221 1122223344456677788888875554433 11 223456
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
...+...||.+-++.|++.+|..+|.+..+
T Consensus 166 R~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 677888899999999999999999988754
No 292
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.83 E-value=0.41 Score=45.44 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hCCcc
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNV--KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER--EGEYS 194 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~--~~~~~ 194 (230)
.+..++.++...|++++|+.+-.++..+..+. .+.+.....+.+++...+..++...|+..+.++..+..- .++.|
T Consensus 975 ~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP 1054 (1236)
T KOG1839|consen 975 KYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHP 1054 (1236)
T ss_pred HHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCC
Confidence 45578889999999999999999999887764 367778888999999999999999999999998765433 23467
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 195 GSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
..+..-.+++.++...++++.|+.+.+.|+++.+
T Consensus 1055 ~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1055 PTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 7777788999999999999999999999998543
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.66 E-value=1.4 Score=35.14 Aligned_cols=131 Identities=8% Similarity=0.054 Sum_probs=80.1
Q ss_pred HHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026948 83 RQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG 162 (230)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~ 162 (230)
..+++..|++.++.-+.. +.. -..++-.+-.+++.+++|++-.+.|.+.+...++.--.-....+.++
T Consensus 43 p~~Al~sF~kVlelEgEK----------geW--GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~ 110 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEK----------GEW--GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINS 110 (440)
T ss_pred HHHHHHHHHHHHhccccc----------chh--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 455666777777665431 111 23366778889999999999999999999876642111111122222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 163 LGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 163 lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
+-..-...++-+--.+.|+..++..+...+.......-..+|.+|...++|.+-....++.-.
T Consensus 111 IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 111 ILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 222222334444455566666666555555555555667789999999998877766665443
No 294
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.53 E-value=2.2 Score=35.71 Aligned_cols=104 Identities=18% Similarity=0.140 Sum_probs=66.6
Q ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHH
Q 026948 119 SRLKTGKNFLR---NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---------QGKYREAIKYHSMVLQI 186 (230)
Q Consensus 119 ~~~~~g~~~~~---~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~---------~~~~~~Ai~~~~~al~~ 186 (230)
.....|..+.+ .|+.++|++.+..++.- .....+..+.-+|.+|-+ ....++|+++|.++.++
T Consensus 181 i~~~yafALnRrn~~gdre~Al~il~~~l~~-----~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 181 IKFQYAFALNRRNKPGDREKALQILLPVLES-----DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-----cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 34455666666 89999999999886552 222245566677777653 33578899999998865
Q ss_pred HHHh--------------C-------------------------CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 187 SERE--------------G-------------------------EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 187 ~~~~--------------~-------------------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.... . +.......+-.++.+....|++++|+.+++++.+..
T Consensus 256 ~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 256 EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 4220 0 000111122235666777889999999999988754
No 295
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=3.1 Score=33.44 Aligned_cols=101 Identities=23% Similarity=0.217 Sum_probs=76.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM---------------VL 184 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~---------------al 184 (230)
.+..+.-....|++.+|...+..++...++ ...+...++.++...|+.+.|...+.. -+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPE------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcc------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344556777889999999999999997666 467778889999999998777776653 13
Q ss_pred HHHHH-------------hCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 185 QISER-------------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 185 ~~~~~-------------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
++..+ ...+|++...-+.++..+...|+++.|.+.+-..+..
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33332 2234667788889999999999999999887665543
No 296
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.39 E-value=0.42 Score=41.35 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948 121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQ---GKYREAIKYHSMVLQISEREGEYSGST 197 (230)
Q Consensus 121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~---~~~~~Ai~~~~~al~~~~~~~~~~~~~ 197 (230)
..-|.--+..+....|+..|.+++...+. ....+.+.+.+++++ |+---|+..+..|+++. +...
T Consensus 378 ~~egnd~ly~~~~~~~i~~~s~a~q~~~~------~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln------~s~~ 445 (758)
T KOG1310|consen 378 KTEGNDGLYESIVSGAISHYSRAIQYVPD------AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLN------PSIQ 445 (758)
T ss_pred HhhccchhhhHHHHHHHHHHHHHhhhccc------hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCC------hHHH
Confidence 34444444556677888889888885443 677788888887774 56666888888888775 7888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+++.|++++.+++++.+|+.+..-+...++
T Consensus 446 kah~~la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 446 KAHFRLARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 9999999999999999999998776555444
No 297
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=3.7 Score=33.52 Aligned_cols=110 Identities=12% Similarity=0.097 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
...++..+|..|.+-|+-+.|.+.+.+..+-.-..+...+..-+...+|..|....=.. +..++|=.+.++.+|=..
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~---~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVT---ESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHH---HHHHHHHHHHHhCCChhh
Confidence 45578899999999999999999999988866667777777777778888876543333 333444445555554332
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
....-..-|.-.....++.+|...|-.++..+.
T Consensus 180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 180 RNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 333334446666778889999888877766543
No 298
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.30 E-value=0.14 Score=39.39 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=35.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 168 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 168 ~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+.+|.+-|.+.|.+++.+. |.....|..+|...++.|+++.|...|++.+++-+
T Consensus 6 ~~~~D~~aaaely~qal~la------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALELA------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhcC------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34566666666666666664 55566666666666666666666666666665543
No 299
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.27 E-value=0.32 Score=39.27 Aligned_cols=62 Identities=11% Similarity=0.156 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+.+.-....|+.++|...|+.|+.+. |..+.++..+|...+.-++.=+|..+|-+|+.+.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlala------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALA------PTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcC------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 334444567899999999999999997 88899999999999999999999999999987654
No 300
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.10 E-value=4.9 Score=34.10 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=71.4
Q ss_pred HHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026948 80 ALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEEL--LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEK 157 (230)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 157 (230)
+..+..+...|+.+++...++...........++...+ ...-.+..||..+++.+.|+++-.+.+-+.+. ..
T Consensus 189 qk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~------~f 262 (569)
T PF15015_consen 189 QKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS------YF 262 (569)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc------hh
Confidence 34566677778888888766544333221112222222 23447899999999999999999999885444 44
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~ 191 (230)
.-+..-+.+++...+|.+|-+-+--+.-+.--.+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455567889999999999888877765554433
No 301
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.96 E-value=7.3 Score=36.07 Aligned_cols=90 Identities=16% Similarity=0.078 Sum_probs=74.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 026948 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 201 (230)
Q Consensus 122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 201 (230)
-.|.+....|++++|++..+.++...+...... ...++..+|.+..-+|++++|..+..++.++.++.+.......+.+
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~~-r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~ 541 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYRS-RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL 541 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccchh-hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 467788889999999999999998666532222 4567889999999999999999999999999888777666677778
Q ss_pred HHHHHHHHcCC
Q 026948 202 AIADCYTELGD 212 (230)
Q Consensus 202 ~lg~~y~~~g~ 212 (230)
..+.+...+|+
T Consensus 542 ~~s~il~~qGq 552 (894)
T COG2909 542 QQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHhhH
Confidence 88899999993
No 302
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.94 E-value=5.7 Score=34.42 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV 183 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a 183 (230)
..++...+|.+..+.|+.++|++.+...++..+. .+......++-.++...+.|.++...+.+-
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~----~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN----LDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc----cchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4556778999999999999999999998875432 234567899999999999999999888873
No 303
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.94 E-value=1.4 Score=38.19 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=63.5
Q ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 026948 149 NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG-EYSGSTEAYGAIADCYTELGD-LERAARFYDKYISR 226 (230)
Q Consensus 149 ~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~ 226 (230)
+.+|.....--+.-+|.++...|+...|..+|..+++-..... +.-..+.+++.+|..|+.+|. .+++..+..+|-+.
T Consensus 441 ~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 441 KIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred CCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 3445555666677789999999999999999999875543333 333577899999999999999 99999999999876
Q ss_pred h
Q 026948 227 L 227 (230)
Q Consensus 227 ~ 227 (230)
+
T Consensus 521 ~ 521 (546)
T KOG3783|consen 521 A 521 (546)
T ss_pred c
Confidence 6
No 304
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.78 E-value=8.1 Score=35.78 Aligned_cols=133 Identities=16% Similarity=0.098 Sum_probs=86.1
Q ss_pred HHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 026948 84 QAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGL 163 (230)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~l 163 (230)
+.++..-+.++...+. ......+......|....-.|++++|..+...+.+.+..++.......+....
T Consensus 475 e~a~~lar~al~~L~~-----------~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~ 543 (894)
T COG2909 475 EEAEDLARLALVQLPE-----------AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQ 543 (894)
T ss_pred HHHHHHHHHHHHhccc-----------ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3444444455555554 33344565777889999999999999999999999999888887777787777
Q ss_pred HHHHHHcCCH--HHHHHHHHHH--------------------------------------HHHHHHhCCcc-cHHHHHHH
Q 026948 164 GASLQRQGKY--REAIKYHSMV--------------------------------------LQISEREGEYS-GSTEAYGA 202 (230)
Q Consensus 164 g~~~~~~~~~--~~Ai~~~~~a--------------------------------------l~~~~~~~~~~-~~~~~~~~ 202 (230)
+.+...+|+. .+....|... +.+.......+ ...-+++.
T Consensus 544 s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~ 623 (894)
T COG2909 544 SEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSM 623 (894)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHH
Confidence 7777777732 2222222211 11110011111 11123457
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 203 IADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 203 lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
++.++...|++++|....+......
T Consensus 624 LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 624 LAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 8999999999999998888776544
No 305
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.76 E-value=5.2 Score=33.53 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR---QGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
...++=..|....+|+.-+...+..-.+ +.+ +........+..|.++.+ .|+.++|++.+..++.-. ...
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~-p~~-~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-----~~~ 215 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEAL-PTC-DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-----ENP 215 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhcc-Ccc-chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----CCC
Confidence 4556666788888998888776644332 111 123345566777778878 899999999999975442 355
Q ss_pred HHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhh
Q 026948 196 STEAYGAIADCYTE---------LGDLERAARFYDKYISRL 227 (230)
Q Consensus 196 ~~~~~~~lg~~y~~---------~g~~~~A~~~~~~al~~~ 227 (230)
.++.+..+|.+|.. ....++|+.+|.++..+-
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 67899999999864 224689999999987653
No 306
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.56 E-value=2.7 Score=29.76 Aligned_cols=65 Identities=15% Similarity=0.307 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 119 SRLKTGKNFLRNQDL---EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~---~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
+.+++++......+. .+.+..++..++ ..++.....+.+.|+..+.+.|+|+.|+.|....++..
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 556667776655443 455556666554 12444566788889999999999999999999988774
No 307
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.38 E-value=1.8 Score=36.98 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948 115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM 182 (230)
Q Consensus 115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~ 182 (230)
.+..-.+.-|...+.+|+|.++..+-.=..+++|+ +.++.-+|.+....++|++|-+++..
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS-------~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS-------PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 34445556677788899999998876666665543 67899999999999999999999987
No 308
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.31 E-value=0.41 Score=38.02 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Q 026948 136 AFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 209 (230)
Q Consensus 136 A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 209 (230)
|..+|.+|..+.+. .+..++.+|.++...|+.-+|+-+|-+++-.. ...+.+..|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~------~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPS------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR------IPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TT------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS------B--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC------CCCcccchhhhhccccchHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHH
Confidence 67899999999888 67789999999999999999999999998553 3346788888888877
No 309
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.18 E-value=1 Score=39.94 Aligned_cols=100 Identities=10% Similarity=0.048 Sum_probs=75.5
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 026948 126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 205 (230)
Q Consensus 126 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 205 (230)
+-...|+..+-+..|.+|++-.+-....-........+|..|...|+.+.|...|++|.+.. .+.-...+.+|++.|.
T Consensus 356 V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~--y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 356 VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP--YKTVEDLAEVWCAWAE 433 (835)
T ss_pred hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC--ccchHHHHHHHHHHHH
Confidence 33456888899999998887332111222245667889999999999999999999998764 1222345789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhh
Q 026948 206 CYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 206 ~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.-....+++.|....++|....
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP 455 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVP 455 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCC
Confidence 9999999999999999887543
No 310
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.16 E-value=5.5 Score=32.63 Aligned_cols=104 Identities=19% Similarity=0.097 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHh---------------------------cCChHHHHHHHHHHHHHHHH
Q 026948 118 LSRLKTGKNFLRNQDLEKAFTEFKAALE-LAQN---------------------------VKDPIEEKKAARGLGASLQR 169 (230)
Q Consensus 118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~---------------------------~~~~~~~~~~~~~lg~~~~~ 169 (230)
...+..+......|+..+|+......+. .... .......+.++..+|.....
T Consensus 185 ~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~ 264 (352)
T PF02259_consen 185 RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE 264 (352)
T ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence 3566678888899999999998887777 2211 11234456778888888878
Q ss_pred c------CCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHh
Q 026948 170 Q------GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDL-----------------ERAARFYDKYISR 226 (230)
Q Consensus 170 ~------~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~-----------------~~A~~~~~~al~~ 226 (230)
. ++.++++..|++++.+. +....+|+.+|..+...=+. ..|+.+|-+++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~a~~~~------~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~ 338 (352)
T PF02259_consen 265 LYSKLSSESSDEILKYYKEATKLD------PSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSL 338 (352)
T ss_pred hccccccccHHHHHHHHHHHHHhC------hhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 7 99999999999999986 66677888888887654222 2466777766655
Q ss_pred h
Q 026948 227 L 227 (230)
Q Consensus 227 ~ 227 (230)
-
T Consensus 339 ~ 339 (352)
T PF02259_consen 339 G 339 (352)
T ss_pred C
Confidence 4
No 311
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=92.16 E-value=2.8 Score=29.11 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc---------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYS---------GSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~---------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
.+|....+.+++-.|+-+|++|+.+.++..... -...+..|||..++.+|+.+=.++|++-|-+
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 445555555555555555555555554431000 1223466777778888887777777766544
No 312
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.04 E-value=1.5 Score=30.95 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 156 EKKAARGLGASLQRQ---GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 156 ~~~~~~~lg~~~~~~---~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
...+.++++.+.... .+-++.+..++..++ ...+...-++.+.|+..+.++|+|++|+.|.+..++.-
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 445677888777655 456678888888765 12234456788899999999999999999999887753
No 313
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=92.03 E-value=7 Score=38.15 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
.+..+..+|...+.+++|.++++..++-+.. ....+...|..++++.+-+.|...+.+|+....+ .....
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv~ 1601 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQ------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHVE 1601 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcc------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhHH
Confidence 5667888999999999999999988874443 5566777888888998889999999999888632 23566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.....+....+.|+.+.+...|+--+..++
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayP 1631 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYP 1631 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCc
Confidence 777788899999999999999988776553
No 314
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.00 E-value=3.7 Score=33.44 Aligned_cols=109 Identities=13% Similarity=0.027 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948 115 EELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ--NVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 115 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~--~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
.-+.....+|.+|-..++|..|...+.. +.... ...+.......+..+|..|.+.++..+|..+-.++--......+
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 3445677999999999999998775532 21111 11122334556888999999999999999998887433222222
Q ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948 193 YSGSTEAYGAIADCYTELGDLERAARFYDKYI 224 (230)
Q Consensus 193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 224 (230)
+......-.--|++.-..++|=+|...|.+..
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222223555666777766666665544
No 315
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=92.00 E-value=2.8 Score=29.10 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=53.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC--Ch-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVK--DP-------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--~~-------~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
+..+|...++.+++-.++-+|++|+.+..+.. .. ........||+..++.+|+.+-.++|++-|-+.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence 34578888999999999999999999888752 11 112445899999999999999999999877543
No 316
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=6.2 Score=32.45 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=71.7
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc-HHHHHHHHH-
Q 026948 127 FLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAYGAIA- 204 (230)
Q Consensus 127 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~-~~~~~~~lg- 204 (230)
..+.++.++|+.+.++...-.+....+.........+|.++...||.+++.+.+...-....+..+-+. ....++.++
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 344569999999999999888776666667778888999999999999999999887766555555444 444455564
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 026948 205 DCYTELGDLERAARFYDKYI 224 (230)
Q Consensus 205 ~~y~~~g~~~~A~~~~~~al 224 (230)
..|...|++...-...-+.+
T Consensus 165 qYyk~~~d~a~yYr~~L~YL 184 (380)
T KOG2908|consen 165 QYYKKIGDFASYYRHALLYL 184 (380)
T ss_pred HHHHHHHhHHHHHHHHHHHh
Confidence 44567888876544444433
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.81 E-value=0.4 Score=36.23 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAI 177 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai 177 (230)
.+...+.+|..|. ..|.++|+..+.+++++.+. +....+..+..|+.++..+|+++.|-
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~--~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNP--DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4446667777766 67999999999999998876 43446788999999999999999885
No 318
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.81 E-value=9.5 Score=34.35 Aligned_cols=135 Identities=8% Similarity=0.005 Sum_probs=89.1
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
..+.+-..+.+++..... .+-.+....+..-++.++.+.+... |....++.++.++..+.........+
T Consensus 75 n~~~Ae~~L~k~~~l~~~----------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frl 143 (608)
T PF10345_consen 75 NLDLAETYLEKAILLCER----------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRL 143 (608)
T ss_pred CHHHHHHHHHHHHHhccc----------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHH
Confidence 344444455566555543 1222234445556788888887777 99999999998887554443332222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
-........+|+..|++.++.........++..-...+....+.+....+..+++++..+++....
T Consensus 144 l~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~ 209 (608)
T PF10345_consen 144 LKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQA 209 (608)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Confidence 213333334899999999999999887666655555556666777888888888988888886544
No 319
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.65 E-value=0.92 Score=24.04 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=9.7
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 026948 160 ARGLGASLQRQGKYREAIKY 179 (230)
Q Consensus 160 ~~~lg~~~~~~~~~~~Ai~~ 179 (230)
.+.+|..+..+|+|++|++.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34445555555555555555
No 320
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.49 E-value=1.5 Score=39.85 Aligned_cols=100 Identities=30% Similarity=0.429 Sum_probs=57.6
Q ss_pred HHHHHHhCCCHHHHHHHHHH------HHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------
Q 026948 123 TGKNFLRNQDLEKAFTEFKA------ALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMV------------- 183 (230)
Q Consensus 123 ~g~~~~~~g~~~~A~~~~~~------al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~a------------- 183 (230)
-|.+|.+..++++|+++|++ ++++++- .-+......-..-|.-.-..|+++-|+.+|-.+
T Consensus 667 agdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a 745 (1636)
T KOG3616|consen 667 AGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA 745 (1636)
T ss_pred hhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 34455556678888887654 4444432 122222223333455666777788777776543
Q ss_pred ------HHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 184 ------LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 223 (230)
Q Consensus 184 ------l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 223 (230)
+.+.....|..-....|-.++.-|...|+|+-|.+.|.++
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 2232223333323334556788899999999998887654
No 321
>PRK10941 hypothetical protein; Provisional
Probab=91.43 E-value=3.6 Score=32.89 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
.+.++=.+|...++++.|+.+.+..+.+.+. .+.-....|.+|.+.|.+..|...++..++..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~------dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPE------DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 4447788899999999999999999997766 44556678999999999999999999988776
No 322
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.30 E-value=3.9 Score=32.75 Aligned_cols=95 Identities=18% Similarity=0.111 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q 026948 118 LSRLKTGKNFLR----NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR----QGKYREAIKYHSMVLQISER 189 (230)
Q Consensus 118 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~Ai~~~~~al~~~~~ 189 (230)
.....+|..|.. ..+..+|.++|..+.. .....+.+++|..|.. ..|+.+|..+|+++.+..
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-- 143 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAA--------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-- 143 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhh--------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC--
Confidence 356677777764 3578899999985555 2255678889999887 569999999999997653
Q ss_pred hCCcccHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHH
Q 026948 190 EGEYSGSTEAYGAIADCYTELG-------DLERAARFYDKYIS 225 (230)
Q Consensus 190 ~~~~~~~~~~~~~lg~~y~~~g-------~~~~A~~~~~~al~ 225 (230)
. +.-..+.+.+|..|..-+ +..+|..+|.++..
T Consensus 144 --~-~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~ 183 (292)
T COG0790 144 --N-VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE 183 (292)
T ss_pred --C-hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH
Confidence 1 110344888888887642 23478888888754
No 323
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.23 E-value=0.52 Score=26.28 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 201 GAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 201 ~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
++++.+|..+|+++.|.+..++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4677888888888888888777764
No 324
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=90.67 E-value=2.8 Score=36.69 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=52.5
Q ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948 119 SRLKTGKNFL--RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGS 196 (230)
Q Consensus 119 ~~~~~g~~~~--~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 196 (230)
++-++|.+-- ....-+.++..|.+|+..++..-+.. +..-|..+|-.+++.++|.+|+.++-.|-+...+.+....+
T Consensus 279 ALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~-HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reD 357 (618)
T PF05053_consen 279 ALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNH-HVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSRED 357 (618)
T ss_dssp HHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGG
T ss_pred hhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCC-ccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccH
Confidence 4444454432 22334567888999999888754433 44456777888999999999999999998887766555555
Q ss_pred HHHHHHH
Q 026948 197 TEAYGAI 203 (230)
Q Consensus 197 ~~~~~~l 203 (230)
.+.|-.+
T Consensus 358 eEiYKEf 364 (618)
T PF05053_consen 358 EEIYKEF 364 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 325
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.52 E-value=9.7 Score=32.14 Aligned_cols=96 Identities=26% Similarity=0.255 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948 118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 197 (230)
Q Consensus 118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 197 (230)
..++.-++.-.-.|+++.|..-|+..+. ++......+.+|-.--.+.|+++-|+.|-+++-... |...
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A------p~l~ 188 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA------PQLP 188 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc------cCCc
Confidence 3455567777788999999999988776 655555556666566678999999999999998776 6667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
.+....-......|+++.|++..+....
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 7777777778899999999998876654
No 326
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.46 E-value=3.5 Score=26.92 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHH
Q 026948 138 TEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 217 (230)
Q Consensus 138 ~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 217 (230)
..+++.+.. .+....+.+.++..+...|++++|++.+...++..+..+ ...+...+=.++..+|.-+.-.
T Consensus 9 ~al~~~~a~------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~----~~~ar~~ll~~f~~lg~~~plv 78 (90)
T PF14561_consen 9 AALEAALAA------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE----DDAARKRLLDIFELLGPGDPLV 78 (90)
T ss_dssp HHHHHHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC----CCHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHc------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc----ccHHHHHHHHHHHHcCCCChHH
Confidence 345555553 233668889999999999999999999988876653322 2345555666677777755444
Q ss_pred HHHHHHH
Q 026948 218 RFYDKYI 224 (230)
Q Consensus 218 ~~~~~al 224 (230)
.-|++-+
T Consensus 79 ~~~RRkL 85 (90)
T PF14561_consen 79 SEYRRKL 85 (90)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4454443
No 327
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=90.37 E-value=1 Score=27.68 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
.+...|.-.=..|+|++|+++|.+++..
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444455555556666666666665443
No 328
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=90.36 E-value=0.91 Score=28.57 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=20.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948 164 GASLQRQGKYREAIKYHSMVLQISER 189 (230)
Q Consensus 164 g~~~~~~~~~~~Ai~~~~~al~~~~~ 189 (230)
|.--=..|+|++|+++|..+++....
T Consensus 13 A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 13 AFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 33444889999999999999988755
No 329
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.33 E-value=7.5 Score=32.81 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHhCCcc
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS----EREGEYS 194 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~----~~~~~~~ 194 (230)
++..+|.-|...|+++.|+..|-++...+-. .......+.++-.+....|+|..-..+-.+|.... .....
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~-- 226 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQE-- 226 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHh--
Confidence 6778999999999999999999997765543 22345567777778888899988888888776552 11111
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 195 GSTEAYGAIADCYTELGDLERAARFYDKY 223 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 223 (230)
..+...+.-|.+...+++|+.|..++-.+
T Consensus 227 v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 227 VPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22335556666777788999999887543
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.19 E-value=2.8 Score=33.74 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 161 RGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
...+..|...|.+.+|+.+.++++.+. |.....+..+-.++..+||--.|+..|++.-+..
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld------pL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD------PLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 334566889999999999999999986 7778889999999999999999999998876543
No 331
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.96 E-value=2.4 Score=35.65 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026948 112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 188 (230)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~ 188 (230)
+...++...+.+-..|...+-|++|...-.++. ++........++..+.+|.+..-+++|..|.++|.+|+....
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 455566556667778888888888877665543 122223335788899999999999999999999999987763
No 332
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.85 E-value=1.1 Score=28.11 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
.+...+.-+=..|++.+|+.+|+++++.
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444454555566666666666666554
No 333
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.84 E-value=8.9 Score=30.99 Aligned_cols=80 Identities=9% Similarity=0.066 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 210 (230)
Q Consensus 131 g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 210 (230)
...++-++.+.+.++-....+.......+..++|..|++.+|-+.+.+++.+.+.-.-..+-.-+..-+-..+|.+|..+
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence 45566677777777766665667778899999999999999999999999998876665555545555566666666443
No 334
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=89.64 E-value=0.9 Score=28.91 Aligned_cols=26 Identities=35% Similarity=0.314 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 202 AIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 202 ~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
+.|..+.+.|+.++|+.+|++++...
T Consensus 13 ~kaL~~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 13 SKALRADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence 34444445556666666666665544
No 335
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=89.58 E-value=0.17 Score=41.39 Aligned_cols=103 Identities=16% Similarity=0.093 Sum_probs=78.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC--------C-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVK--------D-----PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--------~-----~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
.-..|...+..++++.|..-|.+++....... + .........+++.+-...+.+..|+.....++..
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 33577788999999999999999888665211 1 1112234667888888899999999888777662
Q ss_pred HHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 187 SEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 187 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+....+++..+..+..+.++++|+++++.+....+
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p 340 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP 340 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCc
Confidence 366678999999999999999999999999866543
No 336
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.08 E-value=3.8 Score=35.63 Aligned_cols=76 Identities=21% Similarity=0.077 Sum_probs=62.6
Q ss_pred ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Q 026948 112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALEL-AQNVKDPIEEKKAARGLGASLQRQGK-YREAIKYHSMVLQIS 187 (230)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~~~~lg~~~~~~~~-~~~Ai~~~~~al~~~ 187 (230)
+........+-+|.++...|+-..|..+|.-.++- .....+....+.+++.+|..+..++. ..++.+++.+|-+..
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 44555666778999999999999999999877643 33455777789999999999999999 999999999986654
No 337
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=88.89 E-value=1.4 Score=27.75 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 157 KKAARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
+..+...+.-.=..|+|++|+.+|..+++.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 334455555566678888888888887665
No 338
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.55 E-value=7.4 Score=28.06 Aligned_cols=84 Identities=24% Similarity=0.167 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
.+......-...++.+++.......--+.++ ....-.--|.++...|++.+|+..++...+- .+..+.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------~~~~p~ 79 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPN------LKELDMFDGWLLIARGNYDEAARILRELLSS------AGAPPY 79 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------ccccchhHHHHHHHcCCHHHHHHHHHhhhcc------CCCchH
Confidence 4444455555578888888777655555555 4455566788899999999999999986432 234455
Q ss_pred HHHHHHHHHHHcCCHH
Q 026948 199 AYGAIADCYTELGDLE 214 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~ 214 (230)
+.-.++.|...+||.+
T Consensus 80 ~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 80 GKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHhcCChH
Confidence 6666788888888753
No 339
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.47 E-value=11 Score=33.88 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hCC
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER------EGE 192 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~------~~~ 192 (230)
.+...|..|...|+.+.|...++++.+. ..+.-...+..+.+-|..-.+..+++.|++..++|..+... .+.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V--~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKV--PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcC--CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 4557899999999999999999999984 23344446778888888999999999999999999865433 111
Q ss_pred ccc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 193 YSG------STEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 193 ~~~------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
.|- ....|...++..+..|=++.-...|++.+++
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 121 2235666777788888888888888888763
No 340
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.98 E-value=2.7 Score=22.25 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHh
Q 026948 199 AYGAIADCYTELGDLERAARF--YDKYISR 226 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~--~~~al~~ 226 (230)
.++.+|-.+...|++++|++. |.-+..+
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 345556666666666666666 5544433
No 341
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=87.85 E-value=14 Score=30.51 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS 194 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 194 (230)
....-...|+...|..+|...+..|...++..--++. .+..=..-|..+..-+||..|..||-.|++-....+++.
T Consensus 170 v~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 170 VHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred ehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 4455567788888999999988888887776544443 333333447888888999999999999987665555543
No 342
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=87.33 E-value=1.9 Score=27.25 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 160 ARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
+...|.-.=..|+|++|+.+|.++++.
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444455566666666666666555
No 343
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.23 E-value=14 Score=29.85 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948 160 ARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYI 224 (230)
Q Consensus 160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 224 (230)
-..+...+++.|.|.+|+....-.+.-.++..|.+....+|..-..+|.+..+..++.....-|-
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaAr 192 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAAR 192 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHH
Confidence 45567788899999999999999988888888888888888888999999988888877766553
No 344
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=87.09 E-value=1.2 Score=35.26 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026948 130 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISE 188 (230)
Q Consensus 130 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~ 188 (230)
.-....|.+...+|+-.++..+|......+.+..|..|+..++|+-|..||.+|.++..
T Consensus 52 ~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~ 110 (368)
T COG5091 52 DATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYV 110 (368)
T ss_pred ccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 34677888888888888888888887887888888888888888888888888888764
No 345
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=86.38 E-value=11 Score=28.43 Aligned_cols=105 Identities=21% Similarity=0.111 Sum_probs=61.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Q 026948 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYG 201 (230)
Q Consensus 122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 201 (230)
..+......|++++|...++++.+...+.+.......-.+.-|.+-..+..|.+|...|.-.-.-...+.+.-+.+...+
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~Y 113 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAY 113 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHH
Confidence 34555667789999999999988877765544434445566677777788899998776542211100111011111222
Q ss_pred H--HHH----------HHHHcCCHHHHHHHHHHHHHh
Q 026948 202 A--IAD----------CYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 202 ~--lg~----------~y~~~g~~~~A~~~~~~al~~ 226 (230)
- +|+ .....|++++|...++=.-++
T Consensus 114 ilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 114 ILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 2 222 234578889998887654443
No 346
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=86.19 E-value=2.9 Score=33.17 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 172 KYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 172 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
....|.+...+|+-..+..+|...+..+-...+..|....+|+.|..||.+|.+.+..
T Consensus 54 ~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 54 TMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred ChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 5667889999999999999999988888889999999999999999999999987754
No 347
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.04 E-value=14 Score=31.22 Aligned_cols=93 Identities=11% Similarity=0.056 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 210 (230)
Q Consensus 131 g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 210 (230)
.++..-.+-++.-++-++....+....+++..+|.-|...|+.+.|++.|-++-+...+ .....+.+.|+-.+-..+
T Consensus 124 ~~a~~~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~ 200 (466)
T KOG0686|consen 124 KKAVLKLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYM 200 (466)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhh
Confidence 33444444555555555555556667889999999999999999999999997666532 124567788888888899
Q ss_pred CCHHHHHHHHHHHHHh
Q 026948 211 GDLERAARFYDKYISR 226 (230)
Q Consensus 211 g~~~~A~~~~~~al~~ 226 (230)
|+|..-..+-.+|...
T Consensus 201 ~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 201 GNWGHVLSYISKAEST 216 (466)
T ss_pred cchhhhhhHHHHHHhC
Confidence 9998888877777654
No 348
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.01 E-value=3.5 Score=26.88 Aligned_cols=45 Identities=24% Similarity=0.227 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 176 AIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 176 Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
.+..+++.++-. |....+.+.+|..+...|++++|++.+-..+..
T Consensus 7 ~~~al~~~~a~~------P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 7 DIAALEAALAAN------PDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHS------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHcC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 355566666654 778899999999999999999999988877754
No 349
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.96 E-value=1.8 Score=33.57 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=49.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 126 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
.....++.+.|.+.|.+++.+.+. ....++.+|....+.|+.+.|...|++.+++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch------hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 345678999999999999997766 67778899999999999999999999999885
No 350
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=85.77 E-value=3.7 Score=25.13 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 148 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 148 (230)
.+..+...|...-..|++++|+++|.+++....
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 445666788888899999999999999988543
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.56 E-value=2.1 Score=23.81 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 161 RGLGASLQRQGKYREAIKYHSMVLQ 185 (230)
Q Consensus 161 ~~lg~~~~~~~~~~~Ai~~~~~al~ 185 (230)
.+++..|...|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5788999999999999999999874
No 352
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.09 E-value=5 Score=31.92 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Q 026948 152 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLES 229 (230)
Q Consensus 152 ~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 229 (230)
+.....+...++=..+.+.++++.|..+-++.+.+. |..+.-+..-|.+|.++|.+.-|++.++..++..++
T Consensus 176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~------P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLN------PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhC------CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 444466778888888999999999999999999886 666777888999999999999999999887765543
No 353
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=85.03 E-value=16 Score=32.32 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHH
Q 026948 140 FKAALELAQNVKDPIEEKKAARGLGASLQR--QGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAA 217 (230)
Q Consensus 140 ~~~al~l~~~~~~~~~~~~~~~~lg~~~~~--~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 217 (230)
-++.+-+.-..+.-...+.++.+||.+--- ..+-..++..|.+|+...+..-+. ....-|..+|-.|.+.++|.+|+
T Consensus 260 qq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n-~HvYPYty~gg~~yR~~~~~eA~ 338 (618)
T PF05053_consen 260 QQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNN-HHVYPYTYLGGYYYRHKRYREAL 338 (618)
T ss_dssp HHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcC-CccccceehhhHHHHHHHHHHHH
Confidence 344444444445555577888888877543 233456899999999988776553 24456888999999999999999
Q ss_pred HHHHHHHHhh
Q 026948 218 RFYDKYISRL 227 (230)
Q Consensus 218 ~~~~~al~~~ 227 (230)
.++-.|-+..
T Consensus 339 ~~Wa~aa~Vi 348 (618)
T PF05053_consen 339 RSWAEAADVI 348 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 354
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.67 E-value=7.4 Score=29.00 Aligned_cols=84 Identities=12% Similarity=0.026 Sum_probs=48.6
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHH
Q 026948 129 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCY 207 (230)
Q Consensus 129 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y 207 (230)
..+..++|+..|...-+ .+.......+....|.+..+.|+-..|+.+|...-.- ...+. ..-.+...-+..+
T Consensus 70 ~~~k~d~Alaaf~~lek----tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 70 QENKTDDALAAFTDLEK----TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HcCCchHHHHHHHHHHh----cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHH
Confidence 34555555554443222 2233334556778889999999999999999885332 22111 1122344445566
Q ss_pred HHcCCHHHHHHH
Q 026948 208 TELGDLERAARF 219 (230)
Q Consensus 208 ~~~g~~~~A~~~ 219 (230)
...|.|++-..-
T Consensus 143 vD~gsy~dV~sr 154 (221)
T COG4649 143 VDNGSYDDVSSR 154 (221)
T ss_pred hccccHHHHHHH
Confidence 677778765543
No 355
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.97 E-value=32 Score=31.54 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------h-------CCcccHHHHHHHHHHHHHHcCCHHH
Q 026948 152 DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER---------E-------GEYSGSTEAYGAIADCYTELGDLER 215 (230)
Q Consensus 152 ~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~---------~-------~~~~~~~~~~~~lg~~y~~~g~~~~ 215 (230)
+......+..++|..+..+..+++|.++|.++-..... . ...|.....+-.+|+.+...|--++
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHH
Confidence 44556778888888888888888888888765432211 0 0112333445556777777777777
Q ss_pred HHHHHH
Q 026948 216 AARFYD 221 (230)
Q Consensus 216 A~~~~~ 221 (230)
|.+.|-
T Consensus 871 AV~a~L 876 (1189)
T KOG2041|consen 871 AVEAYL 876 (1189)
T ss_pred HHHHHH
Confidence 766653
No 356
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=83.40 E-value=9.1 Score=36.19 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=65.0
Q ss_pred HHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026948 82 RRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAAR 161 (230)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~ 161 (230)
.+++++..|++.-...|. .. +--.+.+..|.....+.+-..--..+.+|+......-+.+..+--|-
T Consensus 490 ~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (932)
T PRK13184 490 LYDQALIFYRRIRESFPG------------RK-EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYL 556 (932)
T ss_pred HHHHHHHHHHHHhhcCCC------------cc-cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHH
Confidence 456677778887777765 11 11225666666655332211111456666666666556666677788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
+.+.+|.+.|+|++-++++.-|++...+.+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 8899999999999999999999988754443
No 357
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=83.29 E-value=28 Score=29.75 Aligned_cols=108 Identities=16% Similarity=0.004 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHh-
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKY-------REAIKYHSMVLQISERE- 190 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~-------~~Ai~~~~~al~~~~~~- 190 (230)
....+|..++..|+|+.|...|+-..+-+..-+--...+-++.-.|.+..-.+.. ++...+++.|+....+.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 3457899999999999999999988886654222222344455556666655533 36777888887777662
Q ss_pred ----CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 191 ----GEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 191 ----~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
.....-..+....+.++...|.+.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 112244556777788889999998888877666543
No 358
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.15 E-value=9.1 Score=24.06 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 149 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 149 (230)
.+..+...|.-+-..|++.+|+.+|++++++.-.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4456678899999999999999999999986543
No 359
>PF12854 PPR_1: PPR repeat
Probab=83.05 E-value=3.9 Score=21.11 Aligned_cols=27 Identities=22% Similarity=0.553 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDK 222 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~ 222 (230)
+..+|..+-..|.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456677777788888888888877764
No 360
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=82.80 E-value=3.7 Score=25.68 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 157 KKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
+..+...|.-.-..|++++|+.+|.++++..
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3444555655666777777777777776653
No 361
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.78 E-value=8.1 Score=32.80 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQN---VKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~ 191 (230)
+...+.+++.-.|||..|+...+. +++.+. .....-....++.+|.+|+-+++|.+|++.|...+-...+..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677788899999999886542 111111 012333455699999999999999999999999986654433
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.15 E-value=2.1 Score=37.79 Aligned_cols=90 Identities=19% Similarity=0.198 Sum_probs=69.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 026948 126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 205 (230)
Q Consensus 126 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 205 (230)
.++.+|+..+|+.++..++-..+.+ ..--++..+|.++.+.|...+|--.+..|+.-. +....-++.+|.
T Consensus 222 YWR~~G~~~~A~~Ca~~a~hf~~~h----~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA------~~~t~n~y~l~~ 291 (886)
T KOG4507|consen 222 YWRIKGEPYQAVECAMRALHFSSRH----NKDIALLSLATVLHRAGFSADAAVILHAALDDA------DFFTSNYYTLGN 291 (886)
T ss_pred HHHHcCChhhhhHHHHHHhhhCCcc----cccchhhhHHHHHHHcccccchhheeehhccCC------ccccccceeHHH
Confidence 3456899999999999998876552 223457789999999999999887776664432 444555888999
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 026948 206 CYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 206 ~y~~~g~~~~A~~~~~~al~ 225 (230)
++..+|+|.....+|..+.+
T Consensus 292 i~aml~~~N~S~~~ydha~k 311 (886)
T KOG4507|consen 292 IYAMLGEYNHSVLCYDHALQ 311 (886)
T ss_pred HHHHHhhhhhhhhhhhhhhc
Confidence 99999999888888887765
No 363
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=82.09 E-value=5.5 Score=25.14 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 148 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 148 (230)
.+..+...|...-..|+|++|+.+|.++++..-
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 444566778888889999999999999998654
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.85 E-value=5.8 Score=29.77 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.+.++.+++.++...|+.++|....+++..+++
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 355566666666666666666666666655554
No 365
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.60 E-value=28 Score=28.67 Aligned_cols=76 Identities=13% Similarity=0.045 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Q 026948 134 EKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 209 (230)
Q Consensus 134 ~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 209 (230)
++-++-+++.++-+.+.........+..+.+..|++.||-+.|.+.+.+...-.-..+-.-+..-+...+|..|..
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc
Confidence 3445556666665555445666888999999999999999999999999877665555555666667777777653
No 366
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.56 E-value=11 Score=23.79 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 149 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 149 (230)
.+..+...|...-..|+|++|+.+|.+++++.-.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4456667888899999999999999999986543
No 367
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.54 E-value=11 Score=30.40 Aligned_cols=106 Identities=7% Similarity=-0.052 Sum_probs=78.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc-HHHHH
Q 026948 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG-STEAY 200 (230)
Q Consensus 122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~-~~~~~ 200 (230)
.+...+++.|.|.+|+......+...++..|.......+..-..+|...++..++..-+..|-......-.+|. .+..-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 56788999999999999999999888888888877777777777888888888887777766555433333332 22222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 201 GAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 201 ~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
..-|.....-.+|.-|-.||-.+++-+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhcc
Confidence 333677778889999999998887644
No 368
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=81.15 E-value=35 Score=29.49 Aligned_cols=59 Identities=27% Similarity=0.394 Sum_probs=47.2
Q ss_pred HHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948 157 KKAARGLGA--SLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222 (230)
Q Consensus 157 ~~~~~~lg~--~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 222 (230)
....+.++. ..+.+|+|.++.-+..=..++. | .+.+|..+|.|.....+|++|.+++.+
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~ia------P-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA------P-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC------C-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 334444544 4678999999999887777775 5 678999999999999999999998864
No 369
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=81.03 E-value=12 Score=32.86 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhC---CCHHHHHHHHH
Q 026948 65 GELQRVNEQLRQINAALRRQAKIESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRN---QDLEKAFTEFK 141 (230)
Q Consensus 65 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~A~~~~~ 141 (230)
..++....+.+.......-..++..|.+++...+. ....+.+.+..++.. |+--.|+....
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~----------------~~~~l~nraa~lmkRkW~~d~~~AlrDch 435 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD----------------AIYLLENRAAALMKRKWRGDSYLALRDCH 435 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc----------------hhHHHHhHHHHHHhhhccccHHHHHHhHH
Confidence 44455555555555555667778888888888776 333444556666543 45666777777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 142 AALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 185 (230)
Q Consensus 142 ~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~ 185 (230)
.++++ .+....+.+.|+.+....+++.+|+++...+..
T Consensus 436 ~Alrl------n~s~~kah~~la~aL~el~r~~eal~~~~alq~ 473 (758)
T KOG1310|consen 436 VALRL------NPSIQKAHFRLARALNELTRYLEALSCHWALQM 473 (758)
T ss_pred hhccC------ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 78774 344778899999999999999999998766543
No 370
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=80.86 E-value=12 Score=23.82 Aligned_cols=32 Identities=13% Similarity=-0.056 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948 161 RGLGASLQRQGKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 161 ~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
.+.|..+-..|+.++|+.+|++++....+.-.
T Consensus 12 I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 12 ISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 33344444557777777777777776655433
No 371
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=80.71 E-value=31 Score=28.60 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948 131 QDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 210 (230)
Q Consensus 131 g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 210 (230)
+.++.-+......++-+.+-+-.-.....-..+...|.+.++|.+|+......+.-.++..|.....+++..-..+|..+
T Consensus 102 ~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l 181 (411)
T KOG1463|consen 102 DGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHAL 181 (411)
T ss_pred CCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHH
Confidence 44555566666666655542222222333456778899999999999999999999999999888888888889999999
Q ss_pred CCHHHHHHHHHHHH
Q 026948 211 GDLERAARFYDKYI 224 (230)
Q Consensus 211 g~~~~A~~~~~~al 224 (230)
.+..+|.....-|-
T Consensus 182 ~Nl~KakasLTsAR 195 (411)
T KOG1463|consen 182 RNLPKAKASLTSAR 195 (411)
T ss_pred hcchhHHHHHHHHH
Confidence 99999988776553
No 372
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=80.59 E-value=2.1 Score=32.05 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=61.7
Q ss_pred CCHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Q 026948 131 QDLEKAFT-EFKAALELAQNVKDPIEEKKAARGLGASLQ-----RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA 204 (230)
Q Consensus 131 g~~~~A~~-~~~~al~l~~~~~~~~~~~~~~~~lg~~~~-----~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 204 (230)
|+|-+++. .|++|.++++..-+....+.+.+.+|..+. ..++...|+++|+.+-+. ..+.+..++|
T Consensus 41 gdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--------n~~~aC~~~g 112 (248)
T KOG4014|consen 41 GDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--------NIPQACRYLG 112 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--------CCHHHHhhhh
Confidence 45555554 467777777765565567778888887665 356899999999998543 3567777888
Q ss_pred HHHHHc-----CC--HHHHHHHHHHHHHh
Q 026948 205 DCYTEL-----GD--LERAARFYDKYISR 226 (230)
Q Consensus 205 ~~y~~~-----g~--~~~A~~~~~~al~~ 226 (230)
.+.+.- ++ .++|.+++.++.+.
T Consensus 113 Ll~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 113 LLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred hhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 877642 23 67899999988654
No 373
>PF12854 PPR_1: PPR repeat
Probab=80.49 E-value=4.8 Score=20.74 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948 157 KKAARGLGASLQRQGKYREAIKYHSM 182 (230)
Q Consensus 157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~ 182 (230)
...|.-+-..+++.|+.++|++.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34566677788888888888888764
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.44 E-value=29 Score=27.97 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Q 026948 130 NQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTE 209 (230)
Q Consensus 130 ~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 209 (230)
..+.++|+..|++.+++-.. ....--.++-.+-.+++++++|++-++.|.+.+...+..--......+.+++-+.-..
T Consensus 40 e~~p~~Al~sF~kVlelEgE--KgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGE--KGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccCHHHHHHHHHHHHhcccc--cchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 45899999999999997654 3334556788888999999999999999999887665421111122233333333233
Q ss_pred cCCHHHHHHHHHHHHH
Q 026948 210 LGDLERAARFYDKYIS 225 (230)
Q Consensus 210 ~g~~~~A~~~~~~al~ 225 (230)
..+.+--.+.|+-.++
T Consensus 118 S~~m~LLQ~FYeTTL~ 133 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLD 133 (440)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 3444444455554443
No 375
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=80.12 E-value=6.1 Score=24.59 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 160 ARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
+...|.-.-..|+|++|+.+|..+++.
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444455666666666666666544
No 376
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=79.83 E-value=3.8 Score=19.92 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948 200 YGAIADCYTELGDLERAARFYDKYI 224 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al 224 (230)
|..+-.+|.+.|++++|.+.|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 5556666677777777777766554
No 377
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=79.57 E-value=6.5 Score=24.58 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
.+...|.-.-..|+|++|+.+|.++++.
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455555667777777777776554
No 378
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=79.16 E-value=5.4 Score=38.94 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR 169 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~ 169 (230)
.....-.+|..+...|++.+|+..|.+|++..+..+|....+.++-+++.+..-
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l 294 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLL 294 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHH
Confidence 344455789999999999999999999999999999999999999999877553
No 379
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=78.69 E-value=9.7 Score=23.74 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 149 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 149 (230)
.+..+...|..+-..|++++|+.+|.++++....
T Consensus 7 ~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 7 KAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4555667788888899999999999999986543
No 380
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=78.57 E-value=5.7 Score=24.94 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=11.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 163 LGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 163 lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
.|.-.-..|+|++|..+|..+++.
T Consensus 12 ~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 12 LALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333333445555555555555443
No 381
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=77.31 E-value=17 Score=28.43 Aligned_cols=55 Identities=16% Similarity=0.098 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhh
Q 026948 173 YREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCY-TELGDLERAARFYDKYISRL 227 (230)
Q Consensus 173 ~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y-~~~g~~~~A~~~~~~al~~~ 227 (230)
-+.|...|++|+.+..+. +.+|..-....|.+..| .-+|+.++|+...++|++-.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 467888888888888773 22333334455555554 55888888888888877643
No 382
>PF13041 PPR_2: PPR repeat family
Probab=77.01 E-value=7.7 Score=21.72 Aligned_cols=29 Identities=17% Similarity=0.448 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 197 TEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
..+|..+-..|.+.|++++|.+.|++..+
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566777777778888888887777654
No 383
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=76.95 E-value=8 Score=24.26 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 160 ARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
+...|.-.=..|+|++|+.+|.++++.
T Consensus 9 lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 9 LVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 333444444556666666666666554
No 384
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.94 E-value=1e+02 Score=32.42 Aligned_cols=108 Identities=16% Similarity=0.059 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
+..-...+++.|.+.+..|+++.|-.+.-+|.+.. .+.++...+.....+|+-..|+..+++.+........
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence 33455678899999999999999999888887722 5677888999999999999999999999876543311
Q ss_pred cc-----------cHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhh
Q 026948 193 YS-----------GSTEAYGAIADCYTELGDLE--RAARFYDKYISRLE 228 (230)
Q Consensus 193 ~~-----------~~~~~~~~lg~~y~~~g~~~--~A~~~~~~al~~~~ 228 (230)
.| ....+...++.-..+.|+++ .-..+|.++.++.+
T Consensus 1738 ~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1738 TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred CCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 11 11224455556566666643 45667777776554
No 385
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=76.93 E-value=6 Score=20.07 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 026948 198 EAYGAIADCYTE----LGDLERAARFYDKYIS 225 (230)
Q Consensus 198 ~~~~~lg~~y~~----~g~~~~A~~~~~~al~ 225 (230)
.+.+.+|..|.. ..|.++|..+|+++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 345667776653 2378888888888764
No 386
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=76.91 E-value=7.4 Score=19.25 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948 200 YGAIADCYTELGDLERAARFYDKYI 224 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al 224 (230)
|..+-..|.+.|++++|.+.|++..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555566677777777777776654
No 387
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=76.78 E-value=11 Score=23.69 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 148 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 148 (230)
.+..+...|...-..|+|++|+.+|..+++..-
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 445566777778888999999999999988654
No 388
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.56 E-value=38 Score=27.27 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
...++..++..+...|+++.++..+++.+...+ .....+..+-..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp------~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDP------YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc------cchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 344666788888999999999999999888543 36677888888999999999999999997663
No 389
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=76.51 E-value=31 Score=29.78 Aligned_cols=61 Identities=23% Similarity=0.195 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcccHHHHHHHHHHHHHHcCCHHHHHH
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQISERE--GEYSGSTEAYGAIADCYTELGDLERAAR 218 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 218 (230)
..+..||.....+|+++-|.++|+++-+...-. ....+....+..|+......|++.-|..
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~ 410 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQ 410 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHH
Confidence 467889999999999999999999875443220 0012233444455555555555544433
No 390
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.80 E-value=51 Score=28.29 Aligned_cols=116 Identities=5% Similarity=-0.072 Sum_probs=94.2
Q ss_pred ccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 026948 112 PKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREG 191 (230)
Q Consensus 112 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~ 191 (230)
+-...+...+..+.++....++..|-...++..--+.+..........+..++.++.+.+....+..+.-.++....+..
T Consensus 268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ 347 (482)
T KOG4322|consen 268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS 347 (482)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence 34445567778899999999999999988888877766667777777888888888888888889999988888877766
Q ss_pred CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 192 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.+...+..-.+++.....+|..++|......++...
T Consensus 348 ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~I 383 (482)
T KOG4322|consen 348 LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLI 383 (482)
T ss_pred cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHH
Confidence 666667778888999999999999999998887644
No 391
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=75.74 E-value=48 Score=28.00 Aligned_cols=105 Identities=14% Similarity=0.100 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHH-------
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARG--LGASLQRQGKYREAIKYHSMVLQISER------- 189 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~--lg~~~~~~~~~~~Ai~~~~~al~~~~~------- 189 (230)
.....+...+..++|..|...+.....- ..+... ...+.. .|.-+...-+|++|.+++++.+.....
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~ 208 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREG 208 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 3446777888999999999999987763 223222 233444 466677899999999999987753221
Q ss_pred --------------------hCC---c--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 190 --------------------EGE---Y--SGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 190 --------------------~~~---~--~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
... . ......++.-|.=-...|+|+.|...+=+++++.
T Consensus 209 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 209 LKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 000 0 0011112222333346899999999998888764
No 392
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=75.71 E-value=8.5 Score=19.95 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHH
Q 026948 212 DLERAARFYDKYIS 225 (230)
Q Consensus 212 ~~~~A~~~~~~al~ 225 (230)
|+++|..+|++|.+
T Consensus 23 d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 23 DYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH
Confidence 46777777777754
No 393
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=75.71 E-value=31 Score=28.53 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=48.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 166 SLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 166 ~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
+..+.+|.++|++++++.++-.+..+.+.........+|.++...||.+++.+.....-+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344567999999999999887776666556667788899999999999999887766544
No 394
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.48 E-value=17 Score=30.20 Aligned_cols=68 Identities=25% Similarity=0.292 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK--DPIEEKKAARGLGASLQRQGKYREAIKYH 180 (230)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~ 180 (230)
....+..+...|+-.+.++++++|.+.|..|..++...- .......+++..|.+++..++...++-.+
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344566778899999999999999999999999887643 33345677888899998888877666554
No 395
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=74.07 E-value=5 Score=33.12 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTE 198 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 198 (230)
...+++.+-...+++..|+..-..++. +......+++..|..+....++++|++.++.+.... |....
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~------p~d~~ 344 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALR------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKA------PNDKA 344 (372)
T ss_pred cccchHHhcccccCCCcceeccccccc------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccC------cchHH
Confidence 344577777888888888887776666 555578899999999999999999999999987664 44444
Q ss_pred HHHHHHHHHHH
Q 026948 199 AYGAIADCYTE 209 (230)
Q Consensus 199 ~~~~lg~~y~~ 209 (230)
....+..+-..
T Consensus 345 i~~~~~~~~~~ 355 (372)
T KOG0546|consen 345 IEEELENVRQK 355 (372)
T ss_pred HHHHHHHhhhH
Confidence 44444443333
No 396
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=73.97 E-value=15 Score=22.91 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQ 148 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~ 148 (230)
.+..+...|...-..|++++|+.+|.++++..-
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFM 37 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 444566778888889999999999999998654
No 397
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.80 E-value=38 Score=28.18 Aligned_cols=28 Identities=21% Similarity=0.074 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
..+.+|.-|...+|++.|+..++++...
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 4445666667777776666666666543
No 398
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=71.79 E-value=16 Score=22.60 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 149 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 149 (230)
+..+...|...-..|++++|+.+|..+++..-.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 344556777788889999999999999985543
No 399
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=70.93 E-value=11 Score=18.63 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 199 AYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 199 ~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
.|..+-.++.+.|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456667777777777777777776544
No 400
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=68.96 E-value=18 Score=22.72 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 149 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 149 (230)
.+..+...|...-..|+|++|..+|..+++..-.
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4445666777777789999999999998886543
No 401
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.77 E-value=41 Score=27.39 Aligned_cols=58 Identities=26% Similarity=0.271 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 185 (230)
Q Consensus 122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~ 185 (230)
..+..|...|.+.+|+.+.++++++.+- ....+..+-.++...||--+|++.|++--+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL------~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPL------SEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3556678899999999999999995443 666777888889999999999999887543
No 402
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=68.65 E-value=20 Score=32.70 Aligned_cols=32 Identities=25% Similarity=0.576 Sum_probs=28.1
Q ss_pred CcccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 192 EYSGSTEAYGAIADCYTELGDLERAARFYDKY 223 (230)
Q Consensus 192 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 223 (230)
++.....++.++|..+..+.++++|.+||.+.
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567789999999999999999999999875
No 403
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.57 E-value=63 Score=26.27 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH---------------HHHHHHh---cC----------ChHHHHHHHHHHHHHHH
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKA---------------ALELAQN---VK----------DPIEEKKAARGLGASLQ 168 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~---------------al~l~~~---~~----------~~~~~~~~~~~lg~~~~ 168 (230)
..+...++.+|...|+.+.|...+.. -+++... .+ ..+....+-+.++..+.
T Consensus 168 ~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~ 247 (304)
T COG3118 168 SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLH 247 (304)
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33667788888888888777553321 1222222 11 22234567889999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948 169 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222 (230)
Q Consensus 169 ~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 222 (230)
..|+++.|.+.+-..++...... ...+...+-.++...|.-+.+..-|++
T Consensus 248 ~~g~~e~Ale~Ll~~l~~d~~~~----d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 248 LVGRNEAALEHLLALLRRDRGFE----DGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred HcCCHHHHHHHHHHHHHhccccc----CcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999999999988776654322 234566677777777755545444443
No 404
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=68.36 E-value=7.3 Score=33.58 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=35.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 168 QRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 168 ~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
.+.|+.+.|.+..++ ......|..||......|+++-|.++|+++-+
T Consensus 329 l~lg~L~~A~~~a~~-----------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE-----------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHCT-HHHHHHHCCC-----------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HhcCCHHHHHHHHHh-----------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 466777776665544 33567999999999999999999999998743
No 405
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.36 E-value=12 Score=34.60 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
..-.+|.+.|+|+.|+++....- .....++..-|+.+...++|..|.++|-+.+..++
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p---------~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FE 420 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRP---------DALETVLLKQADFLFQDKEYLRAAEIYAETLSSFE 420 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCH---------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH
Confidence 44556777777777776665431 12234666677777777777777777766655543
No 406
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=68.28 E-value=13 Score=36.39 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc
Q 026948 156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL 210 (230)
Q Consensus 156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 210 (230)
..+..-.+|+.+...|++.+|++.|..|+...+..+|.-+.+.++-.++.|..-.
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~ 295 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLL 295 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHH
Confidence 5667778999999999999999999999999999999999999999888776543
No 407
>PRK11677 hypothetical protein; Provisional
Probab=67.94 E-value=36 Score=24.10 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 026948 66 ELQRVNEQLRQINAAL 81 (230)
Q Consensus 66 ~~~~l~~~~~~~~~~~ 81 (230)
+..++..++++.....
T Consensus 30 ~q~~le~eLe~~k~el 45 (134)
T PRK11677 30 QQQALQYELEKNKAEL 45 (134)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555544
No 408
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.09 E-value=79 Score=27.33 Aligned_cols=108 Identities=11% Similarity=-0.045 Sum_probs=63.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH---HHHHHHH--HHHHHHHcCC----------HHHHHHHHHHHH
Q 026948 120 RLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE---EKKAARG--LGASLQRQGK----------YREAIKYHSMVL 184 (230)
Q Consensus 120 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~---~~~~~~~--lg~~~~~~~~----------~~~Ai~~~~~al 184 (230)
++..|...+....|++|+..+..|-+.+..++.... ...+..+ +-+||+..++ ...|.+.|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 445677788889999999988777766554432211 1122222 3445555443 344445554442
Q ss_pred HH------HHHhCCccc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 185 QI------SEREGEYSG---STEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 185 ~~------~~~~~~~~~---~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
-- ..+.++.|. .-..+..-|.+.+++|+-++|.++++.+...+
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l 297 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKL 297 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11 011223332 23345567999999999999999999887644
No 409
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=65.88 E-value=87 Score=26.94 Aligned_cols=77 Identities=6% Similarity=-0.148 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 189 (230)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~ 189 (230)
.+..+.++..++..+-..+....+..+...+.......+.+...+..-..++..+.-.|..+.|+..+..++....-
T Consensus 309 ~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~ 385 (482)
T KOG4322|consen 309 EEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILV 385 (482)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHh
Confidence 34455566677777777777778888888888877777777667777788888899999999999999999876543
No 410
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.11 E-value=87 Score=26.28 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHH-----------------------HHHHHHHHHHHHHHcCC
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIE-----------------------EKKAARGLGASLQRQGK 172 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~-----------------------~~~~~~~lg~~~~~~~~ 172 (230)
.+.+++.++.++..+|+...|.+..++|+=..+..-.... .-.+++.......++|.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 3445566667777777777777777777766666321111 11234444555556677
Q ss_pred HHHHHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948 173 YREAIKYHSMVLQISEREGEYS-GSTEAYGAIADCYTELGDLERAARFYDK 222 (230)
Q Consensus 173 ~~~Ai~~~~~al~~~~~~~~~~-~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 222 (230)
+..|.++++-.+.++ +. +..-+.+-|-..-.+.++|+==++.++.
T Consensus 119 ~rTAlE~~KlLlsLd-----p~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 119 WRTALEWCKLLLSLD-----PDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHHHHHHHHHhcC-----CCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 777777776666664 11 2222333333333455555544444443
No 411
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.05 E-value=24 Score=32.75 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 139 EFKAALELAQNVK-DPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 139 ~~~~al~l~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
.|.-|+.+++... +...........|.-++.+|++++|..+|.+++...
T Consensus 349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 4667777887654 444567778889999999999999999999998543
No 412
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.41 E-value=67 Score=25.09 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhC-----C-----CHHHHHHHHHHHHHHHHh-cC-ChHHHHHHHHHHHHHH-HHcCCHHHHHHHHH
Q 026948 115 EELLSRLKTGKNFLRN-----Q-----DLEKAFTEFKAALELAQN-VK-DPIEEKKAARGLGASL-QRQGKYREAIKYHS 181 (230)
Q Consensus 115 ~~~~~~~~~g~~~~~~-----g-----~~~~A~~~~~~al~l~~~-~~-~~~~~~~~~~~lg~~~-~~~~~~~~Ai~~~~ 181 (230)
..+..+-..|..|+.. | -.++|...|++|+.++.. .+ .++..-....|.+..+ -..|+.++|++..+
T Consensus 114 skvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~ 193 (236)
T PF00244_consen 114 SKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAK 193 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHH
T ss_pred HHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3444444677776532 2 136788899999999987 32 2232222333344444 45899999999999
Q ss_pred HHHHHHHH
Q 026948 182 MVLQISER 189 (230)
Q Consensus 182 ~al~~~~~ 189 (230)
++++-...
T Consensus 194 ~afd~a~~ 201 (236)
T PF00244_consen 194 QAFDEAIS 201 (236)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99876643
No 413
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.02 E-value=62 Score=31.23 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 157 KKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
+..+..+|.+..+.|...+|++.|-+| +++..|...-++-...|+|++=..|...|-+..
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 455778999999999999999999885 234678888888899999999999988876543
No 414
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.42 E-value=76 Score=26.14 Aligned_cols=11 Identities=36% Similarity=0.443 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 026948 135 KAFTEFKAALE 145 (230)
Q Consensus 135 ~A~~~~~~al~ 145 (230)
+|+++-.+|+.
T Consensus 9 kaI~lv~kA~~ 19 (439)
T KOG0739|consen 9 KAIDLVKKAID 19 (439)
T ss_pred HHHHHHHHHhh
Confidence 34444444443
No 415
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.35 E-value=1.4e+02 Score=31.52 Aligned_cols=87 Identities=10% Similarity=-0.034 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcC
Q 026948 133 LEKAFTEFKAALELAQNV-KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELG 211 (230)
Q Consensus 133 ~~~A~~~~~~al~l~~~~-~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 211 (230)
..+-+-.++++.-..... +.....+.++.+.+.+.+..|+++.|-.+.-+|.+. ..+.++...|...+..|
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--------r~~~i~~E~AK~lW~~g 1716 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--------RLPEIVLERAKLLWQTG 1716 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--------ccchHHHHHHHHHHhhc
Confidence 334444455555433222 446668889999999999999999999999888654 25688999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 026948 212 DLERAARFYDKYISRL 227 (230)
Q Consensus 212 ~~~~A~~~~~~al~~~ 227 (230)
+-..|+...++.+...
T Consensus 1717 d~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1717 DELNALSVLQEILSKN 1732 (2382)
T ss_pred cHHHHHHHHHHHHHhh
Confidence 9999999999998654
No 416
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=61.06 E-value=95 Score=25.73 Aligned_cols=79 Identities=9% Similarity=-0.031 Sum_probs=51.1
Q ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 148 QNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 148 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
++.+-.+....+++..+...+..|+|..|-+++--...+.. +.+++...+++..=-+-..+.+++-|.+...+--++.
T Consensus 120 e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~--~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~I 197 (432)
T KOG2758|consen 120 EHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVS--DPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYI 197 (432)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcC--CcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45667777888899999999999999999888766544431 1112223333332223445678888888877765554
Q ss_pred h
Q 026948 228 E 228 (230)
Q Consensus 228 ~ 228 (230)
+
T Consensus 198 D 198 (432)
T KOG2758|consen 198 D 198 (432)
T ss_pred c
Confidence 3
No 417
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.88 E-value=1e+02 Score=25.92 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMV 183 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~a 183 (230)
++..+-....+.++|+-=++.++..
T Consensus 141 ~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 141 VLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 4444555555667776666666554
No 418
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=59.92 E-value=16 Score=24.86 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 135 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 135 ~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
.++++|.++..+.+. .+..++.+|.-+.....|++++.-.++++.+.
T Consensus 62 ~sve~~s~a~~Lsp~------~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 62 GSVECFSRAVELSPD------SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HhHHHHHHHhccChh------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 445556666654443 57888888888777778888888888887653
No 419
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=59.88 E-value=75 Score=24.15 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYD 221 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 221 (230)
.-++..+.....+|++++|...++++.+...+....-....-.+.-|.|--.+.+|-+|...|.
T Consensus 30 ~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~ 93 (204)
T COG2178 30 VRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYS 93 (204)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHH
Confidence 4466677778889999999999999987766544222222223334555555666666665543
No 420
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=59.80 E-value=28 Score=31.96 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCcccH
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQR--QGKYREAIKYHSMVLQISEREGEYSGS 196 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~--~~~~~~Ai~~~~~al~~~~~~~~~~~~ 196 (230)
....-|+..++.+++..+..-|..++.+.++ ++........+...++.. .++|..++.-..-++... |..
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~--~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~------p~i 126 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPK--DHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQ------PRI 126 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccc--cchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc------chH
Confidence 3445677888888999998888888888775 555556666666666654 688999999888887764 888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q 026948 197 TEAYGAIADCYTELGDLERAARFYD 221 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~~~~A~~~~~ 221 (230)
..++...+.+|...+..+-|.+...
T Consensus 127 ~~~Ll~r~~~y~al~k~d~a~rdl~ 151 (748)
T KOG4151|consen 127 SKALLKRARKYEALNKLDLAVRDLR 151 (748)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 8889889999999999888887743
No 421
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=59.55 E-value=19 Score=17.29 Aligned_cols=28 Identities=25% Similarity=0.142 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Q 026948 171 GKYREAIKYHSMVLQISEREGEYSGSTEAYGAIA 204 (230)
Q Consensus 171 ~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 204 (230)
|+.+.|...|++++... +.....|....
T Consensus 1 ~~~~~~r~i~e~~l~~~------~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF------PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC------CCChHHHHHHH
Confidence 46778888888887764 44555555443
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.42 E-value=1.1e+02 Score=25.78 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHh
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY--TELGDLERAARFYDKYISR 226 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y--~~~g~~~~A~~~~~~al~~ 226 (230)
.-....+.-.+..++|..|.+.+...... .++... ...+..++..| +..-++++|.+++++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556667788999999999999997653 122121 34566665555 6788899999999987753
No 423
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.40 E-value=44 Score=21.00 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQN 149 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~ 149 (230)
.+..+...|..--..|+|++|+++|..+++.+-.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 4445566677777789999999999999997765
No 424
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=57.08 E-value=1.5e+02 Score=26.68 Aligned_cols=99 Identities=19% Similarity=0.138 Sum_probs=53.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHhCCcccHHHHHH
Q 026948 123 TGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSM-VLQISEREGEYSGSTEAYG 201 (230)
Q Consensus 123 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~-al~~~~~~~~~~~~~~~~~ 201 (230)
+...+...++...+.-.....+.. .+..+.+..++|......|....++..+.. +................++
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 146 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSV------NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFY 146 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhc------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHH
Confidence 555555666666666666666653 233666777777766655555554444433 4433211111111111222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 202 AIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 202 ~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.+|.....+|+..++..+.+++.+..
T Consensus 147 ~~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 147 QLGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 35777777777777777776666543
No 425
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=56.97 E-value=75 Score=25.45 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=49.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 122 KTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 122 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
++=..+...++++.|..+-.+.+.+.+. .+.-..--|.+|.+.|.+..|++.++..++..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~------dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPE------DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCC------ChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 4556778889999999999999987665 44445678999999999999999999977765
No 426
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=56.35 E-value=1.6e+02 Score=27.00 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948 195 GSTEAYGAIADCYTELGDLERAARFYDKYI 224 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 224 (230)
...++|+..|.-..+..++++|.+.|.+|=
T Consensus 802 ~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 802 FKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred ccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 345778888988899999999999887763
No 427
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.37 E-value=73 Score=22.76 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHH
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLE 214 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 214 (230)
.....+......|+|..|.+....++... |.+..+....+.++..+|.-.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~ad------p~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFAD------PDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHhc
Confidence 34455666778899999999999988775 667778888888888776543
No 428
>PF13041 PPR_2: PPR repeat family
Probab=55.27 E-value=35 Score=18.90 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQ 185 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~ 185 (230)
..|..+=..+.+.|++++|.+.|++-.+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3566677788899999999999998543
No 429
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=54.71 E-value=51 Score=28.88 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHH
Q 026948 121 LKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAY 200 (230)
Q Consensus 121 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 200 (230)
...+.+....|+|+.+......+-.+... ++. +...+-......|++++|...-+--+. +.-..+++.
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~~~s-~~~-----~~~~~~r~~~~l~r~~~a~s~a~~~l~------~eie~~ei~ 394 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKIIGT-TDS-----TLRCRLRSLHGLARWREALSTAEMMLS------NEIEDEEVL 394 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhhhcC-Cch-----HHHHHHHhhhchhhHHHHHHHHHHHhc------cccCChhhe
Confidence 34577888889999887766544433222 111 222233344566788888776654332 112233444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 201 GAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 201 ~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.--+..-..+|=+++|..++++.+.+.+
T Consensus 395 ~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 395 TVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred eeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 4445555677778888888888776543
No 430
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=54.66 E-value=1.6e+02 Score=26.26 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=59.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Q 026948 126 NFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIAD 205 (230)
Q Consensus 126 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~ 205 (230)
++.+.-.+.-......+.+.+.+ .-.++..++.+|... ..++=...+++..+.+ -+....-..++.
T Consensus 75 ~f~~n~k~~~veh~c~~~l~~~e-------~kmal~el~q~y~en-~n~~l~~lWer~ve~d------fnDvv~~ReLa~ 140 (711)
T COG1747 75 IFGDNHKNQIVEHLCTRVLEYGE-------SKMALLELLQCYKEN-GNEQLYSLWERLVEYD------FNDVVIGRELAD 140 (711)
T ss_pred HhccchHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc------chhHHHHHHHHH
Confidence 33333334444445666666433 356788899999888 5666777778776664 344555666788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhh
Q 026948 206 CYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 206 ~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.|+. ++.+++..+|.+|+..+-
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI 162 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFI 162 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhc
Confidence 7777 899999999999987653
No 431
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.38 E-value=34 Score=31.80 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCc-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 181 SMVLQISEREGEY-SGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 181 ~~al~~~~~~~~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
.-|+.+.++...+ ......+..-|.-....|++++|..+|-+.+...+
T Consensus 351 ~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 351 KVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 3344444444433 34666788889999999999999999999987654
No 432
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=53.89 E-value=85 Score=22.98 Aligned_cols=64 Identities=13% Similarity=-0.084 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
....+..+..+-...++.+++...+.-.--+ .|..+..-..-|..+...|++.+|+..++...+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4455667777777888999888887654444 388888888999999999999999999987654
No 433
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=52.25 E-value=79 Score=22.09 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 026948 68 QRVNEQLRQINA 79 (230)
Q Consensus 68 ~~l~~~~~~~~~ 79 (230)
.++..++.+...
T Consensus 28 ~~l~~eL~~~k~ 39 (128)
T PF06295_consen 28 AKLEQELEQAKQ 39 (128)
T ss_pred HHHHHHHHHHHH
Confidence 344454544444
No 434
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=50.95 E-value=1.6e+02 Score=26.23 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 160 ARGLGASLQRQGKYREAIKYHSMVLQISER------EGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 160 ~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~------~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
-+++..-....|.-.++++++.-+..-.+. ....|.....|..+..||+..|.+.+|....++++...+
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~ 228 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKID 228 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 455666677889999999998665433322 123457788899999999999999999999999987553
No 435
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.58 E-value=1.4e+02 Score=24.31 Aligned_cols=62 Identities=16% Similarity=0.098 Sum_probs=43.4
Q ss_pred HHHHHHHHcCCHHHH-HHHHHHHHHHHHHh-CCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 162 GLGASLQRQGKYREA-IKYHSMVLQISERE-GEYSGSTEAYGAIADCYTELGDLERAARFYDKY 223 (230)
Q Consensus 162 ~lg~~~~~~~~~~~A-i~~~~~al~~~~~~-~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 223 (230)
+++.+....+.-+.. ..+.+++++...+. ....+.+..+..+|.....-++..+|..+|-.+
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence 444444444433333 34556677777775 445678899999999999999999999988543
No 436
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=49.66 E-value=33 Score=28.98 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHh
Q 026948 173 YREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD------------LERAARFYDKYISR 226 (230)
Q Consensus 173 ~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~------------~~~A~~~~~~al~~ 226 (230)
...|++|+++|.. ...+..|.++|.++..+|+ |.+|.....+|-+.
T Consensus 334 ~~~Al~yL~kA~d--------~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--------EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--------S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--------cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 4455555555533 2234566666666666664 45555555555443
No 437
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=49.60 E-value=1.2e+02 Score=23.62 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=57.3
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc--HHHH
Q 026948 128 LRNQDLEKAFTEFKAALELAQNVKDP------IEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG--STEA 199 (230)
Q Consensus 128 ~~~g~~~~A~~~~~~al~l~~~~~~~------~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~--~~~~ 199 (230)
+..|+|+.|++....+++..-..++. ...+.-...-+......|..-+. ...+....+. ..-+.|+ .+..
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~-~~~dmpd~vrAKl 171 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLT-TEWDMPDEVRAKL 171 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHH-hcCCCChHHHHHH
Confidence 56799999999999999854333221 11222233334444455552221 1233333332 3334444 4445
Q ss_pred HHHHHHHH---------HHcCCHHHHHHHHHHHHHhhh
Q 026948 200 YGAIADCY---------TELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 200 ~~~lg~~y---------~~~g~~~~A~~~~~~al~~~~ 228 (230)
|...|..+ ...++...|..++++|+.+.+
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 66678777 355688999999999998754
No 438
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.38 E-value=1.4e+02 Score=25.74 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948 157 KKAARGLGASLQRQGKYREAIKYHSMVLQISER 189 (230)
Q Consensus 157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~ 189 (230)
+.+..+.|.++-..+++++|+.+|+++|.+...
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 344556666777777777777777777766554
No 439
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=49.23 E-value=38 Score=26.62 Aligned_cols=61 Identities=11% Similarity=-0.023 Sum_probs=42.4
Q ss_pred hhhhhhhhccccccCCCCCcccccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 026948 87 IESYAPSLSYAPVGSRIPEDEVIVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGAS 166 (230)
Q Consensus 87 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~ 166 (230)
...|.++....|. ....++++|.++...|+.=.|+-+|-+++-. ..+ ...+..|+...
T Consensus 2 ~~~Y~~A~~l~P~----------------~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-----~~P-f~~A~~NL~~l 59 (278)
T PF10373_consen 2 ERYYRKAIRLLPS----------------NGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-----RIP-FPSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHH-TT----------------BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-----SB---HHHHHHHHHH
T ss_pred HHHHHHHHHhCCC----------------CCCcccchhhhhccccchHHHHHHHHHHHhc-----CCC-cHHHHHHHHHH
Confidence 3457777777776 2336889999999999999999999999852 112 35566777766
Q ss_pred HHH
Q 026948 167 LQR 169 (230)
Q Consensus 167 ~~~ 169 (230)
+.+
T Consensus 60 f~~ 62 (278)
T PF10373_consen 60 FEK 62 (278)
T ss_dssp HHH
T ss_pred HHH
Confidence 666
No 440
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.02 E-value=1.3e+02 Score=23.80 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----H---H--HHhCCcccHHHHHHHHHHH
Q 026948 137 FTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ-----I---S--EREGEYSGSTEAYGAIADC 206 (230)
Q Consensus 137 ~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~-----~---~--~~~~~~~~~~~~~~~lg~~ 206 (230)
....+++++-.+..+.+...+..+..+|..+.+.|+|.+|..+|-.+-+ . . -.....+...+.+...|..
T Consensus 70 ~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL 149 (260)
T PF04190_consen 70 KKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVL 149 (260)
T ss_dssp HHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 3345556665544445555677788889999999999999988853311 0 0 0112234445555555555
Q ss_pred -HHHcCCHHHHHHHHHHHHHh
Q 026948 207 -YTELGDLERAARFYDKYISR 226 (230)
Q Consensus 207 -y~~~g~~~~A~~~~~~al~~ 226 (230)
|...++...|...++...+.
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 67789999999887776654
No 441
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=48.74 E-value=1.5e+02 Score=25.11 Aligned_cols=71 Identities=14% Similarity=0.013 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH--HHcCCHHHHHHHHHH
Q 026948 151 KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY--TELGDLERAARFYDK 222 (230)
Q Consensus 151 ~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y--~~~g~~~~A~~~~~~ 222 (230)
+............+.-.++.++|..|...|++.... .-.++.......+..++.+| +..-++++|.+++++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r-~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRR-LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
No 442
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=48.43 E-value=50 Score=22.92 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
.+|..+...|++++|..+|-+|+.+.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~ 93 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVC 93 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 34444445555555555555555553
No 443
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=48.21 E-value=1e+02 Score=22.12 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 195 GSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 195 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
..+..+..+|.+|.+.|+..+|.+...+|.+.
T Consensus 118 ~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 118 INPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 35678888999999999999999888888653
No 444
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.84 E-value=92 Score=21.60 Aligned_cols=84 Identities=11% Similarity=0.075 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Q 026948 131 QDLEKAFTEFKAALELAQNV---KDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCY 207 (230)
Q Consensus 131 g~~~~A~~~~~~al~l~~~~---~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 207 (230)
+.-..-...++++++..... .+.+-....+.. |...-+ ++.+.|+....- +.-...+..|...|..+
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~----ya~~~~--~~~~if~~l~~~----~IG~~~A~fY~~wA~~l 109 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIK----YADLSS--DPREIFKFLYSK----GIGTKLALFYEEWAEFL 109 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHH----HHTTBS--HHHHHHHHHHHH----TTSTTBHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHH----HHHHcc--CHHHHHHHHHHc----CccHHHHHHHHHHHHHH
Confidence 44455556777777766542 223223333333 333222 777777764322 22355678899999999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 026948 208 TELGDLERAARFYDKYI 224 (230)
Q Consensus 208 ~~~g~~~~A~~~~~~al 224 (230)
...|++++|.+.|++++
T Consensus 110 e~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 110 EKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHTT-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhC
Confidence 99999999999999875
No 445
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.62 E-value=35 Score=30.62 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 197 TEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
..-|..||++....+++..|.+++.++-+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 34577778887888888888888777754
No 446
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.48 E-value=1.3e+02 Score=22.90 Aligned_cols=18 Identities=6% Similarity=0.237 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026948 64 RGELQRVNEQLRQINAAL 81 (230)
Q Consensus 64 ~~~~~~l~~~~~~~~~~~ 81 (230)
+.+++.+...+.++....
T Consensus 8 E~~~~~l~~~l~kl~K~~ 25 (200)
T cd07603 8 EADVSELETRLEKLLKLC 25 (200)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555554433
No 447
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=45.96 E-value=1.5e+02 Score=23.43 Aligned_cols=74 Identities=12% Similarity=0.045 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhC-----CC-----HHHHHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 026948 114 KEELLSRLKTGKNFLRN-----QD-----LEKAFTEFKAALELAQN-VK--DPIEEKKAARGLGASLQRQGKYREAIKYH 180 (230)
Q Consensus 114 ~~~~~~~~~~g~~~~~~-----g~-----~~~A~~~~~~al~l~~~-~~--~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~ 180 (230)
...+.-+-..|..|+.. |+ -++|...|++|.+++.. .+ ++....-+++.--..|--.++.++|+...
T Consensus 115 eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lA 194 (244)
T smart00101 115 ESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLA 194 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444444677776543 32 45788899999999875 32 22223333333223344579999999888
Q ss_pred HHHHHHH
Q 026948 181 SMVLQIS 187 (230)
Q Consensus 181 ~~al~~~ 187 (230)
+++++-.
T Consensus 195 k~afd~A 201 (244)
T smart00101 195 KQAFDEA 201 (244)
T ss_pred HHHHHHH
Confidence 8776554
No 448
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=45.16 E-value=2.3e+02 Score=25.45 Aligned_cols=103 Identities=12% Similarity=-0.011 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948 113 KKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 113 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
...+...+..-...-...|+++...-.|++.+.-+.. ...............|+.+-|-..+.++.++..
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~---- 362 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL------YDEFWIKYARWMESSGDVSLANNVLARACKIHV---- 362 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC----
Confidence 3445555555555556789999999988888874333 333444445555556888888887888777752
Q ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 193 YSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 193 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
+..+..+..-+..-...|+++.|...+++...-
T Consensus 363 -k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 363 -KKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred -CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 344555666677777888888888888877653
No 449
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=44.63 E-value=1.2e+02 Score=21.81 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 185 (230)
Q Consensus 154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~ 185 (230)
...+..+..+|.+|.+.|+-.+|-+.+.+|-+
T Consensus 117 ~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 117 EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34678899999999999999999999998743
No 450
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=44.46 E-value=1.8e+02 Score=23.89 Aligned_cols=96 Identities=13% Similarity=-0.004 Sum_probs=61.9
Q ss_pred hCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc------------ccH
Q 026948 129 RNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEY------------SGS 196 (230)
Q Consensus 129 ~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~------------~~~ 196 (230)
...+.++...-+++++...+ +....-..|...-......-.+......|.+++......... ...
T Consensus 77 ~~~~~~~l~~~we~~l~~~~---~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~ 153 (321)
T PF08424_consen 77 KVWDSEKLAKKWEELLFKNP---GSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFM 153 (321)
T ss_pred HhCCHHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHH
Confidence 44466666777777776422 223333333333333334446888888898888766554332 134
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 197 TEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
..++.+++.-..+.|..+.|...++-.+++.
T Consensus 154 l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 154 LYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 5567777888899999999999999888753
No 451
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=44.11 E-value=1.6e+02 Score=23.26 Aligned_cols=54 Identities=11% Similarity=-0.018 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHhC--CcccHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh
Q 026948 173 YREAIKYHSMVLQISEREG--EYSGSTEAYGAIADC-YTELGDLERAARFYDKYISR 226 (230)
Q Consensus 173 ~~~Ai~~~~~al~~~~~~~--~~~~~~~~~~~lg~~-y~~~g~~~~A~~~~~~al~~ 226 (230)
-+.|.+.|++|+++..+.- .+|-.-....|.+.. |.-+++.++|....++|.+-
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4589999999999876522 223233345555555 45679999999777776653
No 452
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=43.96 E-value=2.2e+02 Score=25.49 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=37.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 167 LQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 167 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
|...+|+..|.+.|+-+++-. +|.|... .....-...+|+-..|...|++++..
T Consensus 411 y~cskD~~~AfrIFeLGLkkf---~d~p~yv---~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKF---GDSPEYV---LKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhc---CCChHHH---HHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 556789999999999987664 3333322 33334466788888888888887764
No 453
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.64 E-value=2e+02 Score=24.20 Aligned_cols=116 Identities=16% Similarity=0.066 Sum_probs=60.7
Q ss_pred CccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHH-----
Q 026948 111 DPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASL--QRQGKYREAIKYHSMV----- 183 (230)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~--~~~~~~~~Ai~~~~~a----- 183 (230)
+...+.....+.+|..|+...+++.|...++++...-++.+..... ..-.+...+- -...+++..+.--.++
T Consensus 119 g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~-ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y 197 (449)
T COG3014 119 GNIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYE-EVQKAIKEIDSSKHNINMERSRAEVSEILNNTY 197 (449)
T ss_pred chhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHH
Confidence 4445566677789999999999999999888888754431111000 0000011000 0112222222211111
Q ss_pred ---HHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 184 ---LQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 184 ---l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
+...+..++ -..+.+-+.-|..+.-.|++.++..++..++-+.+
T Consensus 198 ~ny~~~yea~~~-l~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~q 244 (449)
T COG3014 198 SNYLDKYEAYQG-LLNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQ 244 (449)
T ss_pred HHHHHHHHhhcc-cchHHHHHHHHHhcccCccHhHHHHHHHHHhccCc
Confidence 112222222 22344555567777777888888888877766554
No 454
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=42.40 E-value=86 Score=23.80 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhCCcccHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHh
Q 026948 156 EKKAARGLGASLQRQGKYREAIK-YHSMVLQISEREGEYSGSTEAYGAIADCYT-----ELGDLERAARFYDKYISR 226 (230)
Q Consensus 156 ~~~~~~~lg~~~~~~~~~~~Ai~-~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-----~~g~~~~A~~~~~~al~~ 226 (230)
.+.+.+.|| +|-++|. .|++|.++.+..=+....+.+.+..|.-+. ..++...|+++|..+.+.
T Consensus 33 ~Pe~C~lLg-------dYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~ 102 (248)
T KOG4014|consen 33 RPESCQLLG-------DYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA 102 (248)
T ss_pred CchHHHHHH-------HHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc
Confidence 344555555 4444443 355556666555556667777777777554 245789999999988764
No 455
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.39 E-value=99 Score=25.99 Aligned_cols=60 Identities=15% Similarity=0.034 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--CcccHHHHHHHHHHHHHHcCCHHHHH
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREG--EYSGSTEAYGAIADCYTELGDLERAA 217 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~ 217 (230)
.-+...|+-++..++++.|...|..|..+..... .......+++..|.++.+.++.+.+.
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466788999999999999999999988875532 23356677888888888887776554
No 456
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=42.16 E-value=1.5e+02 Score=22.41 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 026948 119 SRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGE 192 (230)
Q Consensus 119 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 192 (230)
.+.+....+...++++.|.......-.+.....+........+.-|......|+..++.+-.++++++.+..+.
T Consensus 130 il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~ 203 (220)
T TIGR01716 130 LLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDELGY 203 (220)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHcCC
Confidence 45555666677788888888777665544221122234444555666667888888888888888888765443
No 457
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=42.16 E-value=62 Score=19.53 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=27.6
Q ss_pred ccchhhHHHHHHHhhhhhcC---ChhhhHhhhhcCCcccchhHHHHHHHHHHH
Q 026948 5 VQLRSTTTTFLVVNTLMLTT---PFKALAETCEADNSFFNMPLLLFVALIGAT 54 (230)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 54 (230)
|++-....+++++++.++++ ..+..+++..-..+++.+|++....+.|..
T Consensus 1 m~~~~l~~~~~llg~~~l~i~~~~~syVd~~G~L~EpFfLiPlg~l~~~~g~~ 53 (63)
T PF13127_consen 1 MKKYILSLILLLLGVVCLFIFNIIGSYVDEDGVLHEPFFLIPLGYLFLLIGII 53 (63)
T ss_pred CcchHHHHHHHHHHHHHHHHHhcccceECCCCeEecccHHHHHHHHHHHHHHH
Confidence 34444555555555554432 223333444446678888888777776544
No 458
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=41.51 E-value=1.1e+02 Score=20.54 Aligned_cols=29 Identities=21% Similarity=0.126 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 026948 117 LLSRLKTGKNFLRNQDLEKAFTEFKAALE 145 (230)
Q Consensus 117 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 145 (230)
.......|..-...||++.|.....++-+
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~ 87 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAK 87 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33556678888999999999999998865
No 459
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=40.66 E-value=2.4e+02 Score=25.00 Aligned_cols=54 Identities=15% Similarity=0.140 Sum_probs=32.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhh
Q 026948 169 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD-LERAARFYDKYISRLE 228 (230)
Q Consensus 169 ~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~ 228 (230)
+.+.|.+--..|.+++... |..++.|..-|.=..+.+. .+.|...+.++|+..+
T Consensus 117 k~~~~~~v~ki~~~~l~~H------p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396|consen 117 KKKTYGEVKKIFAAMLAKH------PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred HhcchhHHHHHHHHHHHhC------CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence 3344666666667766664 5556666655554444443 6677777777666543
No 460
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=39.92 E-value=2.4e+02 Score=24.22 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhh
Q 026948 156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTEL-GDLERAARFYDKYISRL 227 (230)
Q Consensus 156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~-g~~~~A~~~~~~al~~~ 227 (230)
+..+....+..-+.-|+|..|..--+.+.... .....|..|+++-... ||-+++..+.-++++.-
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~~-------pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAAREA-------PRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhhC-------chhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 45556666777778888888888888877663 3456788888887665 99999999998887643
No 461
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.43 E-value=1.9e+02 Score=26.37 Aligned_cols=66 Identities=20% Similarity=0.127 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--CcccHHHH------------HHHHH-HHHHHcCCHHHHHHHHHH
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREG--EYSGSTEA------------YGAIA-DCYTELGDLERAARFYDK 222 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~--~~~~~~~~------------~~~lg-~~y~~~g~~~~A~~~~~~ 222 (230)
.-+..||.+....+++..|.++|.++.++..-.- ...+..+. .+|++ .+|...|+++++.+.+..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 3467899999999999999999999865432100 00112222 23333 246677777777776654
Q ss_pred H
Q 026948 223 Y 223 (230)
Q Consensus 223 a 223 (230)
.
T Consensus 747 t 747 (794)
T KOG0276|consen 747 T 747 (794)
T ss_pred c
Confidence 3
No 462
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=39.06 E-value=1.7e+02 Score=22.12 Aligned_cols=73 Identities=10% Similarity=0.008 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
...++.|.-..+...++++.|...+...-.+.....+.-......+.-|......|+.+++.+-.++++++++
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~ 199 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFD 199 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 4556777777888889999999888886554311001111222233345444577877777777777776653
No 463
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=38.82 E-value=75 Score=21.54 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcC
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVK 151 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~ 151 (230)
.+..++..|..|...||.+.|--+|.+.+.+...+.
T Consensus 37 sa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki~ 72 (115)
T PF08969_consen 37 SANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKIP 72 (115)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence 455677889999999999999999999998885443
No 464
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=38.26 E-value=1e+02 Score=20.83 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 198 EAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
...+..|..|...||.+.|--.|-+.+.++
T Consensus 39 ~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 39 NKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 445666777777778887777777777665
No 465
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.72 E-value=4.1e+02 Score=26.19 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948 118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184 (230)
Q Consensus 118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al 184 (230)
..|..+|....+.|.-.+|++.|-++-. +..|...-.+..+.|.|++-++++.-|-
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikadD-----------ps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKADD-----------PSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcCC-----------cHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3677888888888999999887765432 2334444455556666666666665443
No 466
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=36.69 E-value=2.4e+02 Score=23.63 Aligned_cols=34 Identities=21% Similarity=0.093 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948 156 EKKAARGLGASLQRQGKYREAIKYHSMVLQISER 189 (230)
Q Consensus 156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~ 189 (230)
.+.+++..|......+++.+|+..++.|....+.
T Consensus 247 ~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~ 280 (353)
T cd09243 247 LAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNK 280 (353)
T ss_pred HHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHH
Confidence 4556788888888889999999999998876543
No 467
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=36.37 E-value=1e+02 Score=22.14 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=13.3
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 026948 163 LGASLQRQGKYREAIKYHSM 182 (230)
Q Consensus 163 lg~~~~~~~~~~~Ai~~~~~ 182 (230)
.-.+|+++|+|++|+++++.
T Consensus 109 vWk~yl~~~~fd~Al~~~~~ 128 (147)
T PF05131_consen 109 VWKIYLDKGDFDEALQYCKT 128 (147)
T ss_pred HHHHHHhcCcHHHHHHHccC
Confidence 33456677777777777766
No 468
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=36.06 E-value=1.1e+02 Score=25.36 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 197 TEAYGAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 197 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
+.+++.+|....+.+++.+|+.+++.|.+.
T Consensus 253 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~ 282 (346)
T cd09247 253 ARSQLYLARRLKEAGHIGVAVGVLREALRN 282 (346)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 445666676667777777777777777664
No 469
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=36.03 E-value=1.3e+02 Score=20.06 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCC
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGD 212 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 212 (230)
.....-|.+....||+..|.+...++-+.. +...-.|..-+.+-..+||
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~------~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLS------DNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHcCC
Confidence 334455667778899999999999985442 3334445545665555554
No 470
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=35.92 E-value=2.6e+02 Score=24.01 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 156 EKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
.+.+++.+|......+++.+||.+++.|....
T Consensus 295 ~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L 326 (413)
T cd09245 295 RALACKFLGIDAGENGKVGEAIGWLRAAKKEL 326 (413)
T ss_pred HHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHH
Confidence 35678888888888999999999999998854
No 471
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=34.93 E-value=73 Score=22.12 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhh
Q 026948 200 YGAIADCYTELGDLERAARFYDKYISRLE 228 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 228 (230)
-..+|+.+...|++++|..+|-+|+....
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~ 94 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCP 94 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 45578888889999999999999988654
No 472
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=34.85 E-value=1.8e+02 Score=21.15 Aligned_cols=61 Identities=13% Similarity=-0.015 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 159 AARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 159 ~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
.+......-...++.+++...+...--+ .|..+..-..-|..+...|++++|+..++...+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvL------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVL------RPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3444444455588888888777654333 377788888889999999999999999987654
No 473
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=33.66 E-value=50 Score=28.24 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 026948 201 GAIADCYTELGDLERAARFYDKYISR 226 (230)
Q Consensus 201 ~~lg~~y~~~g~~~~A~~~~~~al~~ 226 (230)
+..|.+|.-+++|.+|+.-|-..+-+
T Consensus 276 Y~VGFayLmmrryadai~~F~niLly 301 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLY 301 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777666544
No 474
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=33.51 E-value=2.8e+02 Score=23.06 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948 135 KAFTEFKAALELAQNVKD-----------------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 189 (230)
Q Consensus 135 ~A~~~~~~al~l~~~~~~-----------------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~ 189 (230)
++.++|+++.......+. ....+.+++..|......+++.+|+.+++.|....+.
T Consensus 214 ~~~~~y~~A~~~l~~~~~~~~~i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 285 (346)
T cd09247 214 GATQFLEEAKNVLRSLATDLKDLDPRFLRFISSCIALHEARSQLYLARRLKEAGHIGVAVGVLREALRNLKK 285 (346)
T ss_pred HHHHHHHHHHHHHHccCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 445577777766654321 1124556778888888889999999999999886443
No 475
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=33.40 E-value=1.5e+02 Score=24.42 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 026948 194 SGSTEAYGAIADCYTELG-----DLERAARFYDKYIS 225 (230)
Q Consensus 194 ~~~~~~~~~lg~~y~~~g-----~~~~A~~~~~~al~ 225 (230)
.....++..++++|...+ ++++|+.+.+++++
T Consensus 173 ~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 173 AWKKAARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 345667888899999998 88999999888875
No 476
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=32.59 E-value=2.8e+02 Score=22.80 Aligned_cols=55 Identities=24% Similarity=0.151 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhcCC------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948 135 KAFTEFKAALELAQNVKD------------------PIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISER 189 (230)
Q Consensus 135 ~A~~~~~~al~l~~~~~~------------------~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~ 189 (230)
++..+|+++.+....... ....+.+++.+|......+++.+|+.+++.|....+.
T Consensus 211 ~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~ 283 (345)
T cd09034 211 EAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALELLKE 283 (345)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 455567777776554221 1124556777788888888999999999988776543
No 477
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.54 E-value=1.8e+02 Score=20.46 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 026948 70 VNEQLRQINA 79 (230)
Q Consensus 70 l~~~~~~~~~ 79 (230)
+..++++...
T Consensus 39 ~q~ELe~~K~ 48 (138)
T COG3105 39 LQYELEKVKA 48 (138)
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 478
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=32.44 E-value=1.8e+02 Score=22.73 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHH---------hCCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026948 116 ELLSRLKTGKNFL---------RNQDLEKAFTEFKAALELAQNVKDPIEEKK 158 (230)
Q Consensus 116 ~~~~~~~~g~~~~---------~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 158 (230)
.+..+-..|..+. ..++...|+.++++|+.+.++++-+.....
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~ 219 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIER 219 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 3434446666662 456778888888888888877776655443
No 479
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.43 E-value=1.1e+02 Score=21.14 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948 135 KAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVL 184 (230)
Q Consensus 135 ~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al 184 (230)
.+.+.|..... +. -....+..|..-|..+...|++++|.+.|+++|
T Consensus 81 ~~~~if~~l~~--~~--IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYS--KG--IGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHH--HT--TSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH--cC--ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 55555554333 22 222256678888899999999999999999875
No 480
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=32.28 E-value=1.8e+02 Score=23.94 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 026948 153 PIEEKKAARGLGASLQRQG-----KYREAIKYHSMVLQ 185 (230)
Q Consensus 153 ~~~~~~~~~~lg~~~~~~~-----~~~~Ai~~~~~al~ 185 (230)
.....-++.-++.++...+ ++++|+++.++++.
T Consensus 172 r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 172 RAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 4456667888899999999 89999999999986
No 481
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.08 E-value=2.1e+02 Score=21.20 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026948 156 EKKAARGLGASLQRQGKYREAIKYHSMVLQIS 187 (230)
Q Consensus 156 ~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~ 187 (230)
.+..+.+++.++...|+.++|....+++..+.
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 35667888999999999999999999988876
No 482
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=32.04 E-value=1.5e+02 Score=19.57 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
...++.++--+.-..+.|+|++|.+.++++-+.
T Consensus 12 aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~ 44 (97)
T cd00215 12 AGNARSKALEALKAAKEGDFAEAEELLEEANDS 44 (97)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555555566667777776666666433
No 483
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=30.97 E-value=1.7e+02 Score=26.66 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
...+|...|.+..+.+++..|.+-|.++++.-
T Consensus 586 ~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklk 617 (1141)
T KOG1811|consen 586 TFGAWHAWGLACLKAENLAAAREKFKQAFKLK 617 (1141)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Confidence 45689999999999999999999999998754
No 484
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=30.35 E-value=1.7e+02 Score=19.48 Aligned_cols=33 Identities=6% Similarity=0.003 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
...+++++--+.-..+.|+|++|.+.++++-+.
T Consensus 14 aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~ 46 (99)
T TIGR00823 14 AGDARSKALEALKAAKAGDFAKARALVEQAGMC 46 (99)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555555566666666666666665433
No 485
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=30.06 E-value=44 Score=22.06 Aligned_cols=6 Identities=0% Similarity=-0.125 Sum_probs=2.2
Q ss_pred hhhHHH
Q 026948 8 RSTTTT 13 (230)
Q Consensus 8 ~~~~~~ 13 (230)
+++.++
T Consensus 4 K~~llL 9 (95)
T PF07172_consen 4 KAFLLL 9 (95)
T ss_pred hHHHHH
Confidence 333333
No 486
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=29.21 E-value=1.7e+02 Score=19.25 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
...++.++.-+.-..+.|+|++|...++++-+.
T Consensus 11 aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~ 43 (96)
T PF02255_consen 11 AGDARSLAMEALKAAREGDFEEAEELLKEADEE 43 (96)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345555666666667777777777777776444
No 487
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.40 E-value=81 Score=21.28 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 158 KAARGLGASLQRQGKYREAIKYHSMVLQ 185 (230)
Q Consensus 158 ~~~~~lg~~~~~~~~~~~Ai~~~~~al~ 185 (230)
.-+..++..|...|.+++|++.+.+-..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4477899999999999999999998544
No 488
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=27.55 E-value=2.4e+02 Score=24.81 Aligned_cols=71 Identities=8% Similarity=0.030 Sum_probs=39.6
Q ss_pred ccCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 109 IVDPKKEELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 185 (230)
Q Consensus 109 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~ 185 (230)
.+.++..++..++.+-..+-.++.+++-.+.|++... ..+...++....-..-...++|..-...|-+++.
T Consensus 34 rIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~------pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 34 RIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSS------PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC------CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 4455666666777777777777777777777776655 2222222222211122234566666666666654
No 489
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=27.50 E-value=1.4e+02 Score=25.28 Aligned_cols=55 Identities=29% Similarity=0.370 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhC-----------CcccHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhh
Q 026948 174 REAIKYHSMVLQISEREG-----------EYSGSTEAYGAIADCYTEL---------GDLERAARFYDKYISRLE 228 (230)
Q Consensus 174 ~~Ai~~~~~al~~~~~~~-----------~~~~~~~~~~~lg~~y~~~---------g~~~~A~~~~~~al~~~~ 228 (230)
..|+.+|+..++...... +......++..+|.+|.+. ++..+++.+|+..+++.+
T Consensus 266 ~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~ 340 (371)
T PF12309_consen 266 SKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCE 340 (371)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888777655321 1113455788999998776 456677777777776654
No 490
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.00 E-value=4.7e+02 Score=23.54 Aligned_cols=87 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHH
Q 026948 118 LSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSGST 197 (230)
Q Consensus 118 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 197 (230)
.+.-.+....-+..+...+.....+++....++..........+.-+.-+++.++|.+|++....|++-. .|
T Consensus 480 e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~v--------eP 551 (569)
T PRK04778 480 EATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLFREYDYKAALEIIATALEKV--------EP 551 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhh--------CC
Q ss_pred HHHHHHHHHHHHcCC
Q 026948 198 EAYGAIADCYTELGD 212 (230)
Q Consensus 198 ~~~~~lg~~y~~~g~ 212 (230)
-++-.+-..|.....
T Consensus 552 G~~~ri~~~y~~~~~ 566 (569)
T PRK04778 552 GVTKRIEDSYEKEKE 566 (569)
T ss_pred cHHHHHHHHHHhccc
No 491
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=26.80 E-value=4.1e+02 Score=25.26 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 200 YGAIADCYTELGDLERAARFYDKYIS 225 (230)
Q Consensus 200 ~~~lg~~y~~~g~~~~A~~~~~~al~ 225 (230)
+..-+.+|...|++.+|...|+.|+.
T Consensus 938 ~~~aa~aye~~gK~~Ea~gay~sA~m 963 (1243)
T COG5290 938 HISAAKAYEVEGKYIEAHGAYDSALM 963 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777777777776654
No 492
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=26.62 E-value=2e+02 Score=19.27 Aligned_cols=32 Identities=9% Similarity=0.031 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 185 (230)
Q Consensus 154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~ 185 (230)
...++.++--+.-..+.|+|++|.+.+++|-+
T Consensus 17 aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 17 SGNARTEVHEAFAAMREGNFDLAEQKLNQSNE 48 (104)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555556666666666666666543
No 493
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.15 E-value=1.9e+02 Score=27.56 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=33.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026948 169 RQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKY 223 (230)
Q Consensus 169 ~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 223 (230)
..|+.+.|++...+ -+..++|..||..-..+|+.+=|..+|++.
T Consensus 655 e~gnle~ale~akk-----------ldd~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKK-----------LDDKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hcCCHHHHHHHHHh-----------cCcHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 44666666666555 334688999999999999999998888764
No 494
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=26.13 E-value=22 Score=31.52 Aligned_cols=103 Identities=15% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Q 026948 116 ELLSRLKTGKNFLRNQDLEKAFTEFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQISEREGEYSG 195 (230)
Q Consensus 116 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 195 (230)
.....+.-+..+...|++..|...+.+.-. ..-............+.+....|++++|+..+.. +... .-....
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~---~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~-~~~~--~l~~~~ 96 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDP---QQLSPSQQARYQLLRARLALAQGDPEQALSLLNA-QDLW--QLPPEQ 96 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhccc---ccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc-CCcc--cCCHHH
Confidence 344555677888899999999887775442 1001222444555668888899999999999975 1111 111233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYI 224 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al 224 (230)
....+...+.++...|++-+|...+-+.-
T Consensus 97 ~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~ 125 (536)
T PF04348_consen 97 QARYHQLRAQAYEQQGDPLAAARERIALD 125 (536)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 45566677999999999888877665443
No 495
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=25.99 E-value=2.1e+02 Score=19.62 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026948 154 IEEKKAARGLGASLQRQGKYREAIKYHSMVLQI 186 (230)
Q Consensus 154 ~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~ 186 (230)
...+++++--+.-..+.|+|++|.+.+++|-+.
T Consensus 28 aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~ 60 (115)
T PRK10454 28 SGQARSLAYAALKQAKQGDFAAAKAMMDQSRMA 60 (115)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455555666666666777777777777776443
No 496
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=25.55 E-value=3.5e+02 Score=23.25 Aligned_cols=32 Identities=16% Similarity=0.022 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 196 STEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 196 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
.+.+++.+|....+.|++.+|+.+++.|....
T Consensus 295 ~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L 326 (413)
T cd09245 295 RALACKFLGIDAGENGKVGEAIGWLRAAKKEL 326 (413)
T ss_pred HHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHH
Confidence 35678888888999999999999999998753
No 497
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=24.50 E-value=4.2e+02 Score=22.09 Aligned_cols=33 Identities=33% Similarity=0.345 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026948 157 KKAARGLGASLQRQGKYREAIKYHSMVLQISER 189 (230)
Q Consensus 157 ~~~~~~lg~~~~~~~~~~~Ai~~~~~al~~~~~ 189 (230)
+.+++..|......+++.+|+..++.|....+.
T Consensus 244 A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 276 (348)
T cd09242 244 SLAAYYHALALEAAGKYGEAIAYLTQAESILKE 276 (348)
T ss_pred HHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHH
Confidence 345666777777788899999999998876543
No 498
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=24.37 E-value=1.5e+02 Score=26.47 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026948 139 EFKAALELAQNVKDPIEEKKAARGLGASLQRQGKYREAIKYHSMVLQ 185 (230)
Q Consensus 139 ~~~~al~l~~~~~~~~~~~~~~~~lg~~~~~~~~~~~Ai~~~~~al~ 185 (230)
...++++++.+.+-.......+.-+|.-..+.|+|-+|+.++.+|-+
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d 453 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGD 453 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
Confidence 34677777777776666677778888888888899999998888754
No 499
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=24.27 E-value=3.8e+02 Score=23.85 Aligned_cols=55 Identities=15% Similarity=0.042 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026948 162 GLGASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDK 222 (230)
Q Consensus 162 ~lg~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 222 (230)
..+.++...|+|++|.....-+-.+.. ....+..-+-.....+|+++.|....+.
T Consensus 328 l~~~i~~~lg~ye~~~~~~s~~~~~~~------s~~~~~~~~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 328 LRSVIFSHLGYYEQAYQDISDVEKIIG------TTDSTLRCRLRSLHGLARWREALSTAEM 382 (831)
T ss_pred HHHHHHHHhhhHHHHHHHhhchhhhhc------CCchHHHHHHHhhhchhhHHHHHHHHHH
Confidence 345677788888888887765543331 1122333344455666777666654443
No 500
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=24.08 E-value=4e+02 Score=21.77 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=42.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 026948 164 GASLQRQGKYREAIKYHSMVLQISEREGEYSGSTEAYGAIADCYTELGDLERAARFYDKYISRL 227 (230)
Q Consensus 164 g~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 227 (230)
+......+..+.|+..++..+.-. ............++.++...|.++-|...|++..+..
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~---~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQA---REPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQI 280 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccC---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 344556777888888877653321 2233455566677999999999999999998877654
Done!