Query 026949
Match_columns 230
No_of_seqs 127 out of 606
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1664 Vacuolar H+-ATPase V1 100.0 1.1E-54 2.4E-59 352.1 28.7 219 1-230 1-219 (220)
2 PRK03963 V-type ATP synthase s 100.0 4.6E-35 1E-39 244.1 27.8 191 10-226 4-198 (198)
3 PF01991 vATP-synt_E: ATP synt 100.0 1.2E-34 2.5E-39 240.6 17.6 198 16-225 1-198 (198)
4 PRK02292 V-type ATP synthase s 100.0 8.9E-32 1.9E-36 222.7 24.9 182 10-227 3-188 (188)
5 PRK01194 V-type ATP synthase s 100.0 2.4E-30 5.1E-35 213.6 23.7 176 10-227 3-182 (185)
6 COG1390 NtpE Archaeal/vacuolar 100.0 1.7E-29 3.6E-34 209.3 25.3 192 9-227 3-194 (194)
7 PRK01558 V-type ATP synthase s 99.9 1.5E-24 3.2E-29 181.0 26.7 194 3-224 2-195 (198)
8 PRK01005 V-type ATP synthase s 99.9 2.1E-21 4.6E-26 162.5 25.2 192 4-227 8-207 (207)
9 TIGR03825 FliH_bacil flagellar 99.6 4.8E-13 1E-17 115.8 24.0 185 10-221 38-249 (255)
10 PRK09098 type III secretion sy 99.6 3E-12 6.6E-17 109.3 23.6 180 8-218 35-221 (233)
11 PRK06937 type III secretion sy 99.5 3.5E-12 7.5E-17 107.0 22.4 170 14-219 32-202 (204)
12 PRK06669 fliH flagellar assemb 99.5 5.5E-11 1.2E-15 104.3 25.7 111 84-217 164-275 (281)
13 PRK06328 type III secretion sy 99.5 6.9E-11 1.5E-15 100.4 23.9 174 14-221 31-205 (223)
14 TIGR02499 HrpE_YscL_not type I 99.3 2.5E-09 5.4E-14 86.3 20.4 149 13-200 14-164 (166)
15 COG1317 FliH Flagellar biosynt 99.2 1.9E-08 4E-13 86.1 24.7 185 3-220 39-228 (234)
16 TIGR03321 alt_F1F0_F0_B altern 99.0 2E-07 4.3E-12 80.4 23.6 171 11-216 59-245 (246)
17 PF06188 HrpE: HrpE/YscL/FliH 99.0 3E-07 6.5E-12 76.4 20.4 153 12-202 30-182 (191)
18 PRK13386 fliH flagellar assemb 98.9 3E-07 6.6E-12 78.8 18.2 103 85-217 121-226 (236)
19 PF02108 FliH: Flagellar assem 98.8 2.9E-07 6.4E-12 70.8 15.2 101 84-211 25-127 (128)
20 PRK05687 fliH flagellar assemb 98.8 3E-06 6.6E-11 72.9 22.6 107 85-218 134-242 (246)
21 PRK06032 fliH flagellar assemb 98.6 3E-05 6.5E-10 64.8 20.8 110 84-216 85-196 (199)
22 PF06635 NolV: Nodulation prot 98.5 6.7E-05 1.5E-09 62.4 20.4 167 15-218 33-200 (207)
23 PRK08475 F0F1 ATP synthase sub 98.3 2.6E-05 5.6E-10 63.4 13.1 91 10-116 75-165 (167)
24 PRK14474 F0F1 ATP synthase sub 98.2 0.0011 2.3E-08 57.4 23.0 166 14-215 62-244 (250)
25 PRK01005 V-type ATP synthase s 97.5 0.045 9.8E-07 46.1 20.7 61 5-69 20-80 (207)
26 PRK13436 F0F1 ATP synthase sub 97.2 0.0062 1.3E-07 50.0 10.7 32 184-217 147-178 (179)
27 PRK08404 V-type ATP synthase s 97.1 0.035 7.7E-07 41.5 13.3 66 10-75 11-76 (103)
28 PRK07352 F0F1 ATP synthase sub 97.0 0.07 1.5E-06 43.5 15.5 95 13-119 75-169 (174)
29 PRK01558 V-type ATP synthase s 97.0 0.034 7.3E-07 46.4 13.7 59 5-67 15-73 (198)
30 PRK03963 V-type ATP synthase s 97.0 0.072 1.5E-06 44.1 15.4 129 4-135 9-153 (198)
31 PRK13460 F0F1 ATP synthase sub 96.9 0.11 2.3E-06 42.4 15.5 97 12-120 71-167 (173)
32 PRK06231 F0F1 ATP synthase sub 96.9 0.092 2E-06 44.1 15.5 99 10-120 101-199 (205)
33 PRK01194 V-type ATP synthase s 96.8 0.055 1.2E-06 44.7 13.7 63 4-66 8-70 (185)
34 CHL00019 atpF ATP synthase CF0 96.8 0.13 2.7E-06 42.4 15.7 97 12-120 79-175 (184)
35 PRK02292 V-type ATP synthase s 96.8 0.037 8E-07 45.6 12.5 58 4-61 8-65 (188)
36 PRK14473 F0F1 ATP synthase sub 96.8 0.14 3E-06 41.2 15.4 99 10-120 61-159 (164)
37 PRK13461 F0F1 ATP synthase sub 96.7 0.18 3.9E-06 40.3 15.4 97 11-119 59-155 (159)
38 PRK13430 F0F1 ATP synthase sub 96.7 0.049 1.1E-06 47.7 12.9 31 184-216 239-269 (271)
39 PRK13434 F0F1 ATP synthase sub 96.6 0.021 4.6E-07 47.0 9.8 32 184-217 143-174 (184)
40 COG2811 NtpF Archaeal/vacuolar 96.6 0.2 4.3E-06 37.7 13.7 47 11-57 27-73 (108)
41 PRK13428 F0F1 ATP synthase sub 96.5 0.039 8.5E-07 51.6 11.9 31 184-216 413-443 (445)
42 PRK14472 F0F1 ATP synthase sub 96.5 0.31 6.6E-06 39.7 15.5 94 13-118 74-167 (175)
43 PRK05759 F0F1 ATP synthase sub 96.4 0.32 7E-06 38.6 15.3 97 10-118 57-153 (156)
44 PRK14471 F0F1 ATP synthase sub 96.4 0.41 8.8E-06 38.5 16.0 99 10-119 61-159 (164)
45 PRK13428 F0F1 ATP synthase sub 96.3 0.26 5.6E-06 46.2 16.1 78 14-102 58-135 (445)
46 TIGR01144 ATP_synt_b ATP synth 96.3 0.38 8.2E-06 37.8 15.3 43 10-52 48-90 (147)
47 PRK13453 F0F1 ATP synthase sub 96.3 0.48 1E-05 38.5 15.6 43 13-55 74-116 (173)
48 TIGR02926 AhaH ATP synthase ar 96.2 0.19 4.1E-06 36.1 11.6 34 11-44 8-41 (85)
49 PRK13455 F0F1 ATP synthase sub 96.2 0.58 1.3E-05 38.4 15.9 93 16-120 86-178 (184)
50 PRK15354 type III secretion sy 96.1 0.67 1.4E-05 38.9 18.9 121 13-145 42-170 (224)
51 PF01991 vATP-synt_E: ATP synt 96.1 0.43 9.2E-06 39.1 14.7 41 10-50 6-46 (198)
52 PRK06568 F0F1 ATP synthase sub 96.0 0.47 1E-05 38.1 13.9 41 10-54 57-97 (154)
53 PRK14475 F0F1 ATP synthase sub 96.0 0.67 1.4E-05 37.5 15.9 95 13-120 66-161 (167)
54 PRK09098 type III secretion sy 95.9 0.64 1.4E-05 39.8 15.4 51 5-55 43-93 (233)
55 COG0712 AtpH F0F1-type ATP syn 95.7 0.13 2.9E-06 42.2 9.8 31 184-216 147-177 (178)
56 TIGR02926 AhaH ATP synthase ar 95.7 0.51 1.1E-05 33.8 12.7 47 19-69 5-51 (85)
57 COG0711 AtpF F0F1-type ATP syn 95.7 0.88 1.9E-05 36.7 14.4 44 11-58 60-103 (161)
58 PRK13441 F0F1 ATP synthase sub 95.6 0.27 5.9E-06 40.1 11.5 32 184-217 146-177 (180)
59 COG2811 NtpF Archaeal/vacuolar 95.5 0.73 1.6E-05 34.7 14.3 40 14-57 19-58 (108)
60 PRK15322 invasion protein OrgB 95.4 1.3 2.8E-05 37.0 20.9 159 13-215 13-173 (210)
61 PRK09173 F0F1 ATP synthase sub 95.4 1 2.2E-05 36.0 13.9 97 13-121 58-154 (159)
62 PRK09173 F0F1 ATP synthase sub 95.4 1.1 2.3E-05 35.8 15.9 25 73-97 99-123 (159)
63 PRK09174 F0F1 ATP synthase sub 95.3 0.79 1.7E-05 38.4 13.5 35 12-46 108-142 (204)
64 PF03179 V-ATPase_G: Vacuolar 95.3 0.63 1.4E-05 34.6 11.6 29 20-52 11-39 (105)
65 PRK06231 F0F1 ATP synthase sub 95.1 1.5 3.3E-05 36.7 14.7 24 42-65 118-141 (205)
66 PRK08475 F0F1 ATP synthase sub 95.1 0.7 1.5E-05 37.4 12.3 41 23-67 77-117 (167)
67 CHL00118 atpG ATP synthase CF0 95.1 1.1 2.4E-05 35.7 13.2 46 10-55 75-120 (156)
68 PRK07353 F0F1 ATP synthase sub 95.0 0.7 1.5E-05 36.0 11.6 41 12-52 60-100 (140)
69 PRK14473 F0F1 ATP synthase sub 94.9 1.6 3.5E-05 35.0 14.8 49 42-94 78-126 (164)
70 PRK08404 V-type ATP synthase s 94.8 1.2 2.6E-05 33.3 13.7 71 19-97 9-79 (103)
71 TIGR01145 ATP_synt_delta ATP s 94.8 0.43 9.3E-06 38.6 10.2 29 185-215 143-171 (172)
72 CHL00019 atpF ATP synthase CF0 94.7 2 4.4E-05 35.2 14.1 24 42-65 94-117 (184)
73 PRK05758 F0F1 ATP synthase sub 94.6 0.43 9.3E-06 38.8 9.9 30 185-216 146-175 (177)
74 PRK00106 hypothetical protein; 94.6 3.1 6.6E-05 40.0 16.8 34 13-46 43-76 (535)
75 COG1390 NtpE Archaeal/vacuolar 94.6 2.1 4.5E-05 35.7 13.9 116 20-154 3-118 (194)
76 PRK14475 F0F1 ATP synthase sub 94.4 2.2 4.7E-05 34.4 14.1 51 42-96 80-130 (167)
77 PRK14474 F0F1 ATP synthase sub 94.4 3 6.5E-05 36.0 16.7 52 6-61 69-120 (250)
78 PRK13454 F0F1 ATP synthase sub 94.4 1 2.2E-05 37.0 11.6 40 10-49 84-123 (181)
79 PRK08476 F0F1 ATP synthase sub 94.4 1.1 2.3E-05 35.3 11.3 44 13-56 63-106 (141)
80 PRK13460 F0F1 ATP synthase sub 94.1 2.6 5.6E-05 34.2 14.5 23 42-64 86-108 (173)
81 PRK06669 fliH flagellar assemb 94.1 3.7 7.9E-05 35.9 16.6 37 187-223 234-277 (281)
82 PRK13461 F0F1 ATP synthase sub 94.1 2.4 5.3E-05 33.8 14.5 51 42-96 75-125 (159)
83 PRK07352 F0F1 ATP synthase sub 94.1 2.7 5.8E-05 34.1 14.7 23 42-64 89-111 (174)
84 PRK14472 F0F1 ATP synthase sub 94.0 2.8 6.1E-05 34.0 14.2 23 42-64 88-110 (175)
85 PRK13453 F0F1 ATP synthase sub 93.9 2.9 6.2E-05 34.0 14.7 26 41-66 87-112 (173)
86 PF00430 ATP-synt_B: ATP synth 93.7 0.83 1.8E-05 34.9 9.3 39 13-51 55-93 (132)
87 CHL00119 atpD ATP synthase CF1 93.5 1 2.2E-05 36.9 10.1 31 185-217 150-180 (184)
88 PRK08474 F0F1 ATP synthase sub 93.5 0.87 1.9E-05 37.1 9.6 32 187-222 143-174 (176)
89 PF03179 V-ATPase_G: Vacuolar 93.5 2.3 5.1E-05 31.5 13.1 45 9-57 11-55 (105)
90 TIGR03321 alt_F1F0_F0_B altern 93.4 4.6 0.0001 34.7 17.3 52 6-61 69-120 (246)
91 PRK13429 F0F1 ATP synthase sub 92.9 2.4 5.3E-05 34.4 11.4 30 185-216 148-177 (181)
92 PF06188 HrpE: HrpE/YscL/FliH 92.6 5.2 0.00011 33.2 14.3 30 21-54 28-57 (191)
93 TIGR03319 YmdA_YtgF conserved 92.4 9.3 0.0002 36.6 16.1 31 14-44 23-53 (514)
94 PRK06568 F0F1 ATP synthase sub 92.4 1.8 3.9E-05 34.8 9.6 66 27-100 63-128 (154)
95 PRK12704 phosphodiesterase; Pr 92.4 9.6 0.00021 36.6 16.1 24 15-38 30-53 (520)
96 TIGR03825 FliH_bacil flagellar 92.1 7.2 0.00016 33.7 19.2 50 86-136 158-213 (255)
97 PRK12704 phosphodiesterase; Pr 92.1 12 0.00025 36.0 17.0 25 80-104 124-148 (520)
98 PRK13455 F0F1 ATP synthase sub 91.9 6 0.00013 32.3 14.2 50 42-95 97-146 (184)
99 PRK05759 F0F1 ATP synthase sub 91.8 5.3 0.00012 31.5 14.3 24 42-65 74-97 (156)
100 TIGR01144 ATP_synt_b ATP synth 91.4 5.7 0.00012 31.0 14.2 43 24-70 51-93 (147)
101 PRK14471 F0F1 ATP synthase sub 90.7 7.4 0.00016 31.1 14.4 51 42-96 78-128 (164)
102 PRK08476 F0F1 ATP synthase sub 90.6 7 0.00015 30.7 11.5 34 21-58 60-93 (141)
103 PRK07353 F0F1 ATP synthase sub 89.9 7.7 0.00017 30.0 13.3 63 25-95 62-124 (140)
104 PF00430 ATP-synt_B: ATP synth 89.6 5.5 0.00012 30.2 9.8 40 23-66 54-93 (132)
105 PRK09174 F0F1 ATP synthase sub 89.5 12 0.00025 31.4 14.3 20 42-61 123-142 (204)
106 CHL00118 atpG ATP synthase CF0 88.2 12 0.00025 29.8 13.3 36 25-64 79-114 (156)
107 PF12072 DUF3552: Domain of un 88.0 14 0.00031 30.7 16.2 29 15-43 26-54 (201)
108 PF00213 OSCP: ATP synthase de 87.5 0.052 1.1E-06 43.9 -3.1 32 182-215 140-171 (172)
109 TIGR03319 YmdA_YtgF conserved 86.4 32 0.00069 33.0 16.9 26 12-37 32-57 (514)
110 PRK06569 F0F1 ATP synthase sub 85.4 17 0.00038 29.1 13.1 17 109-125 125-141 (155)
111 COG0711 AtpF F0F1-type ATP syn 84.9 18 0.0004 28.9 15.0 25 42-66 76-100 (161)
112 PRK13454 F0F1 ATP synthase sub 82.9 24 0.00053 28.8 14.9 34 25-62 88-121 (181)
113 KOG1662 Mitochondrial F1F0-ATP 81.2 3.6 7.8E-05 34.3 5.1 29 184-214 176-204 (210)
114 TIGR01147 V_ATP_synt_G vacuola 80.5 23 0.0005 26.9 13.5 33 20-56 13-45 (113)
115 PRK00106 hypothetical protein; 78.2 68 0.0015 31.0 17.1 26 80-105 139-164 (535)
116 PRK10930 FtsH protease regulat 74.8 72 0.0016 29.8 12.3 18 20-37 267-284 (419)
117 PRK10780 periplasmic chaperone 73.1 46 0.001 26.6 11.0 53 81-147 110-162 (165)
118 PRK12705 hypothetical protein; 72.6 93 0.002 29.9 15.9 28 10-37 31-58 (508)
119 PF12072 DUF3552: Domain of un 71.6 57 0.0012 27.0 17.0 28 10-37 32-59 (201)
120 TIGR02499 HrpE_YscL_not type I 66.5 61 0.0013 25.4 12.2 29 21-53 11-39 (166)
121 PF11657 Activator-TraM: Trans 63.8 73 0.0016 25.3 13.2 52 4-55 23-74 (144)
122 TIGR01933 hflK HflK protein. H 61.8 1E+02 0.0022 26.3 10.1 29 4-37 149-177 (261)
123 KOG1772 Vacuolar H+-ATPase V1 61.2 68 0.0015 24.1 11.5 16 20-35 13-28 (108)
124 PF03938 OmpH: Outer membrane 60.8 78 0.0017 24.7 10.5 54 80-147 102-155 (158)
125 PRK06937 type III secretion sy 57.6 1.1E+02 0.0024 25.3 12.2 28 20-51 27-54 (204)
126 TIGR01932 hflC HflC protein. H 54.2 1.6E+02 0.0034 26.2 11.8 19 17-35 228-246 (317)
127 PHA02571 a-gt.4 hypothetical p 53.7 94 0.002 23.4 7.1 35 3-37 13-47 (109)
128 PF15513 DUF4651: Domain of un 52.1 36 0.00078 23.1 4.2 13 185-199 35-47 (62)
129 PRK06328 type III secretion sy 44.8 1.9E+02 0.0042 24.4 18.3 114 3-122 31-154 (223)
130 PF05103 DivIVA: DivIVA protei 43.7 7.7 0.00017 29.5 0.0 25 13-37 75-99 (131)
131 PF08112 ATP-synt_E_2: ATP syn 43.7 91 0.002 20.4 6.9 39 9-51 8-46 (56)
132 PF07227 DUF1423: Protein of u 42.3 3E+02 0.0066 26.0 10.6 28 31-59 375-402 (446)
133 cd03404 Band_7_HflK Band_7_Hfl 40.5 2.3E+02 0.005 24.1 8.9 9 4-12 176-184 (266)
134 PRK15354 type III secretion sy 40.5 2.3E+02 0.005 24.0 13.3 43 9-55 49-91 (224)
135 KOG2880 SMAD6 interacting prot 39.6 2.7E+02 0.0059 25.6 9.0 42 9-50 81-122 (424)
136 KOG1772 Vacuolar H+-ATPase V1 37.8 1.8E+02 0.0038 21.9 13.3 28 11-38 15-42 (108)
137 KOG1029 Endocytic adaptor prot 37.2 4.8E+02 0.01 26.8 12.4 29 8-36 327-355 (1118)
138 PRK12705 hypothetical protein; 33.7 4.4E+02 0.0096 25.4 17.8 38 6-43 42-79 (508)
139 PF10669 Phage_Gp23: Protein g 32.3 2.1E+02 0.0046 21.2 6.1 38 51-90 55-92 (121)
140 KOG4702 Uncharacterized conser 30.2 1.5E+02 0.0033 20.6 4.6 31 2-32 43-74 (77)
141 KOG0994 Extracellular matrix g 29.4 6.6E+02 0.014 27.2 10.7 48 103-151 1506-1553(1758)
142 PRK10930 FtsH protease regulat 28.4 5E+02 0.011 24.3 12.8 11 27-37 263-273 (419)
143 PF06903 VirK: VirK protein; 27.4 43 0.00094 24.9 1.7 19 184-204 38-56 (100)
144 PRK13895 conjugal transfer pro 26.4 3.3E+02 0.0072 21.6 12.9 28 10-37 29-56 (144)
145 PRK11029 FtsH protease regulat 26.2 4.9E+02 0.011 23.5 12.5 23 15-37 225-247 (334)
146 cd03405 Band_7_HflC Band_7_Hfl 26.0 3.8E+02 0.0083 22.2 9.2 65 4-72 160-224 (242)
147 TIGR00017 cmk cytidylate kinas 24.4 2.8E+02 0.0061 23.1 6.4 32 185-216 128-159 (217)
148 PF14164 YqzH: YqzH-like prote 23.3 1.4E+02 0.003 20.3 3.4 37 111-147 3-39 (64)
149 PF07960 CBP4: CBP4; InterPro 22.6 68 0.0015 24.9 2.1 45 109-153 4-48 (128)
150 PF14615 Rsa3: Ribosome-assemb 21.6 2E+02 0.0044 18.2 3.8 39 85-124 3-41 (47)
151 PF04716 ETC_C1_NDUFA5: ETC co 21.4 2.5E+02 0.0055 18.4 6.4 39 87-126 5-43 (57)
No 1
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=100.00 E-value=1.1e-54 Score=352.10 Aligned_cols=219 Identities=55% Similarity=0.811 Sum_probs=214.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (230)
Q Consensus 1 ~~~~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~ 80 (230)
|||+||+++|.+|++||++||++||+||-..|++||++||.+|+++++.+|++.|++++++++.++.+..|+.+|++|++
T Consensus 1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK 80 (220)
T KOG1664|consen 1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK 80 (220)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCC
Q 026949 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH 160 (230)
Q Consensus 81 ~l~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~ 160 (230)
+|.+|+++|+.+|++|+.+|...+.+++.|+.+|.+||.||+..|.+|.++|+|++.|.++|+..++++...|....|.
T Consensus 81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~- 159 (220)
T KOG1664|consen 81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGV- 159 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcC-
Confidence 9999999999999999999999999988999999999999999999999999999999999999999999999999998
Q ss_pred CCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcCCCCC
Q 026949 161 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230 (230)
Q Consensus 161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~~~~~ 230 (230)
++++.+|.+.|||+ +|.|||+|+|.||+|.|+|||++||+.++++.+|+|++.|||+++.
T Consensus 160 ~~e~~id~~~fL~~----------~~~GGVvl~s~dgkI~v~NTLesRLeli~~q~lPeIR~aLFG~n~n 219 (220)
T KOG1664|consen 160 GVEVQIDKKDFLPP----------DVAGGVVLYSRDGKIKVSNTLESRLELIAEQKLPEIRKALFGANPN 219 (220)
T ss_pred CceeeechhccCCc----------cccCCeEEEcCCCceEecCcHHHHHHHHHHHhhHHHHHHhcCCCCC
Confidence 48999999999986 8999999999999999999999999999999999999999999873
No 2
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=100.00 E-value=4.6e-35 Score=244.08 Aligned_cols=191 Identities=27% Similarity=0.404 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY----ERKEKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~----~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar 85 (230)
|+++++.|+++|+.++++|+.+|+.+++ +++++...++..+. ++...+++..+++.+|...+..|+.+|.+|
T Consensus 4 l~~i~~~il~~A~~ea~~il~~A~~~a~----~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar 79 (198)
T PRK03963 4 AELIIQEINREAEQKIEYILEEAQKEAE----KIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQ 79 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999988 66666655555433 344556777788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 026949 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII 165 (230)
Q Consensus 86 ~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~ 165 (230)
+++++++|..|+++|.+++.+ .|+.||.+||.+++..+++++++|+|+|.|..++.++++.+...+ | ++++.
T Consensus 80 ~el~~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~~~----~--~~~i~ 151 (198)
T PRK03963 80 EELISEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRDEL----G--DVEIE 151 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHHHh----C--CeEEE
Confidence 999999999999999999876 799999999999999999899999999999999999888766543 2 34566
Q ss_pred eccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcC
Q 026949 166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 226 (230)
Q Consensus 166 vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~ 226 (230)
++. | .+|.|||||+|++|+|+|||||++||+.+|++++|+|++.|||
T Consensus 152 ~~~-------~-------~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i~~~LF~ 198 (198)
T PRK03963 152 LGE-------P-------IETIGGVIVETKDGTIRVDNTFEARMERLESELRAKIAKALFG 198 (198)
T ss_pred ECC-------C-------CCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHHHHHhcC
Confidence 552 1 4789999999999999999999999999999999999999997
No 3
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=100.00 E-value=1.2e-34 Score=240.65 Aligned_cols=198 Identities=33% Similarity=0.447 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (230)
Q Consensus 16 ~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~ 95 (230)
+|+++|+.+|++|+.+|+++++..+..+..+....+...+++..++++..+.+..|......|+.+|.+|+++|+++|++
T Consensus 1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~ 80 (198)
T PF01991_consen 1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE 80 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999997666676666666767777778889999999999999999999999999999999999
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCC
Q 026949 96 ASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG 175 (230)
Q Consensus 96 a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~~L~~~ 175 (230)
++++|.+++.+++.|+.+|.+||.+++..+++++++|+|+|+|.++++.+++.+...|+...|+.++.+..++ .+|
T Consensus 81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~--- 156 (198)
T PF01991_consen 81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DYL--- 156 (198)
T ss_dssp HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T-------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-ccc---
Confidence 9999999999866799999999999999999899999999999999999877666667654444233444442 222
Q ss_pred CCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhc
Q 026949 176 PGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV 225 (230)
Q Consensus 176 ~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF 225 (230)
.+|+|||+++++||+|+|||||++||+.+++.+.|+|++.||
T Consensus 157 --------~~~~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i~~~LF 198 (198)
T PF01991_consen 157 --------IDIIGGFILESEDGKIRVDNTFESRLERLKEEIRPEIAKILF 198 (198)
T ss_dssp --------BSSSSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHHHHHHC
T ss_pred --------CCccceEEEEECCCCEEEECCHHHHHHHHHHHhHHHHHHHcC
Confidence 379999999999999999999999999999999999999999
No 4
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=100.00 E-value=8.9e-32 Score=222.70 Aligned_cols=182 Identities=29% Similarity=0.458 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK----EKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~----~~~~~~~k~~~~S~~~~~~R~~~l~ar 85 (230)
|+++++.|+++|+.++++|+.+|+.+++ .++.+++.++.+..... .+++....++..|...+..|+.+|.+|
T Consensus 3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~----~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r 78 (188)
T PRK02292 3 LETVVEDIRDEARARASEIRAEADEEAE----EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR 78 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999988 88888877755544333 344455556778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 026949 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII 165 (230)
Q Consensus 86 ~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~ 165 (230)
+++|+++|..|+++|.+++.+ .|..+|.+||.++ ++++++|+|+|.|..+++.++.. ++ .+++
T Consensus 79 ~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~----~~------~~~~- 141 (188)
T PRK02292 79 KEVLEDVRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSD----YD------GLEY- 141 (188)
T ss_pred HHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHh----cc------cCee-
Confidence 999999999999999999976 7999999999998 45788999999999999988764 22 1222
Q ss_pred eccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcCC
Q 026949 166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 227 (230)
Q Consensus 166 vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~~ 227 (230)
. +. .+|.|||||+|++|+|+|||||++||+.++++++|+|++.|||.
T Consensus 142 -~------~~--------~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i~~~LF~~ 188 (188)
T PRK02292 142 -A------GN--------IDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISDRLFGE 188 (188)
T ss_pred -C------CC--------CCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHHHHHhcCC
Confidence 1 11 37899999999999999999999999999999999999999984
No 5
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=99.98 E-value=2.4e-30 Score=213.61 Aligned_cols=176 Identities=17% Similarity=0.288 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER----KEKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~----~~~~~~~~k~~~~S~~~~~~R~~~l~ar 85 (230)
++++++.|+++|+.+|++|+.+|+.+++ .|+.++..++....+. ...++...+++.+|.+...+|+.+|.+|
T Consensus 3 le~i~~~I~~ea~~~a~~I~~eA~~~ae----ei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~ar 78 (185)
T PRK01194 3 LEDVIKDIEKSREEKKKEINDEYSKRIE----KLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKR 78 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7899999999999999999999999988 8888887666655433 3456777888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 026949 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII 165 (230)
Q Consensus 86 ~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~ 165 (230)
+++|+++|+.|.++|.++++++ .|+++|.+||.+++..+ +++++|+|++.|..++++. +++
T Consensus 79 ee~I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~l-~~~~~v~~~~~D~~~i~~~-----------------~l~ 139 (185)
T PRK01194 79 REILKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKTL-GEDCIIKVSESDKKKINNA-----------------KIK 139 (185)
T ss_pred HHHHHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHhc-CCCeEEEEcHHhHHHHHhC-----------------cee
Confidence 9999999999999999999876 89999999999999995 5789999999999988651 223
Q ss_pred eccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcCC
Q 026949 166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 227 (230)
Q Consensus 166 vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~~ 227 (230)
+. + .+|.|||||+|.||+|.+||||+++++ +++|.|+..||..
T Consensus 140 ~~-----~----------~~~~GGvil~s~dG~I~ld~~l~~~~~----~~~~~iR~~lf~~ 182 (185)
T PRK01194 140 FA-----D----------IDPYGGILAYSRDGKRELDLRLSSIFE----NILEDLKVYFYEN 182 (185)
T ss_pred eC-----C----------ccccccEEEEeCCCcEEehhhHHHHHH----HhHHHHHHHHHhh
Confidence 22 1 379999999999999999999999775 8889999999963
No 6
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=99.97 E-value=1.7e-29 Score=209.27 Aligned_cols=192 Identities=30% Similarity=0.452 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL 88 (230)
Q Consensus 9 ~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~ 88 (230)
.++.++++|.++|+++|++|...|.++++..+......+...++..+.+..++++..+++++|++...+|.++|++++++
T Consensus 3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~ 82 (194)
T COG1390 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEI 82 (194)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999999999666666666666666666777889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEecc
Q 026949 89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDH 168 (230)
Q Consensus 89 i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~ 168 (230)
|+.+|+.+.++|.+++.+| +|.. |..|+.+++..+.+++++|++++.|..++.+++.+. + ....+
T Consensus 83 l~~~~~~~~e~L~~i~~~~-~~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~~--------~---~~~~~-- 147 (194)
T COG1390 83 LESVFEAVEEKLRNIASDP-EYES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILREL--------K---IGVEL-- 147 (194)
T ss_pred HHHHHHHHHHHHHcCcCCc-chHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhhc--------c---cchhc--
Confidence 9999999999999999998 6666 999999999999999999999999999988776530 1 11112
Q ss_pred ccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcCC
Q 026949 169 HIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 227 (230)
Q Consensus 169 ~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~~ 227 (230)
++. .+|.|||+++++||++.+||||++||+.+++.+.|.|++.||++
T Consensus 148 ----~~~--------~d~~GGvvv~~~dG~i~~dnt~~sil~~~~e~~~~~i~~~lf~~ 194 (194)
T COG1390 148 ----GEG--------IDIIGGVVVESRDGKIRLDNTFESILERVLEELLPEISEKLFGV 194 (194)
T ss_pred ----ccc--------CCCcceEEEEeCCCceeecCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 111 47999999999999999999999999999999999999999984
No 7
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=99.94 E-value=1.5e-24 Score=180.96 Aligned_cols=194 Identities=21% Similarity=0.266 Sum_probs=159.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL 82 (230)
Q Consensus 3 ~~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l 82 (230)
+++++.=+++|.+.|..+|+.+|++|+.+|+++|+ .|+.+++.+...-..+..++++..+++..|+.....|+.++
T Consensus 2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe----~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll 77 (198)
T PRK01558 2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEAE----EIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI 77 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999998 99999998888777777888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 026949 83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP 162 (230)
Q Consensus 83 ~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~ 162 (230)
.+++.+++.+...+.+.+.+.. +++.|..++.+|+..++ +++++.|+++++|...+++.+.+ .++...|.
T Consensus 78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~~---~~~~~l~~--- 147 (198)
T PRK01558 78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILRA---ALGNKLKK--- 147 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHHH---HHHHHhcC---
Confidence 9999999865444444445433 44589999999999875 45678999999999998876543 33333332
Q ss_pred eEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHh
Q 026949 163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 224 (230)
Q Consensus 163 ~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~L 224 (230)
.+++.. . .+|.|||+|.+.||++.+||||+++.+.+++.+.|.++++|
T Consensus 148 gi~i~~------~--------~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~~~~~~l 195 (198)
T PRK01558 148 GIELKP------F--------KGISKGFKIQQKDGSLYYDFSAEAIADILFSYLNPRFKEVI 195 (198)
T ss_pred CeEEcc------c--------CCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhcHHHHHHH
Confidence 234432 1 37999999999999999999999999999999999999987
No 8
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=99.90 E-value=2.1e-21 Score=162.45 Aligned_cols=192 Identities=13% Similarity=0.149 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQ 83 (230)
Q Consensus 4 ~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ 83 (230)
+.+++=+++|...|+.+|+.+|.+|+.+|+++++ .|+.+++.+...-.+...++++..+++..|+.....|..+|.
T Consensus 8 ~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~ 83 (207)
T PRK01005 8 DKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLES 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455557888888999999999999999999987 799999988888888888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCC--------cEEEEecccchHHHHHHHHHHHHHHHH
Q 026949 84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP--------AVLLRCRKDDHHLVESVLESAKEEYAQ 155 (230)
Q Consensus 84 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~--------e~~v~~~~~D~~lv~~~l~~~~~~~~~ 155 (230)
+++++++.+|..+.++|..-.-++ ++||.+||...+...... -+...++|.+..-. +...+...+..
T Consensus 84 aKqevi~~vf~~a~~~lv~~~~~d---~~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~l~~ 158 (207)
T PRK01005 84 LKQAVENKIFRESLGEWLEHVLTD---PEVSAKLIQALVQAIEAQGISGNLTAYIGKHVSARAVNEL--LGKEVTKKLKE 158 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhhcccccccchhhhhcCCHHHHHHH--HHHHHHHHHHH
Confidence 999999999999999997754432 678888888766655321 13345666555432 33333344432
Q ss_pred hhCCCCCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcCC
Q 026949 156 KLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 227 (230)
Q Consensus 156 ~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~~ 227 (230)
. .|++. ...|||+|.+.||++.||||++++++.+|+.+.|.++.+|||+
T Consensus 159 ~------gv~~~-----------------~~~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~~~~~~~LF~~ 207 (207)
T PRK01005 159 K------GVSVG-----------------SFVGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQKDFREMIFQG 207 (207)
T ss_pred c------CeEEe-----------------ccCCceEEEecCCeeEEeCcHHHHHHHHHHHhhHHHHHHhcCC
Confidence 1 24444 1269999999999999999999999999999999999999985
No 9
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=99.61 E-value=4.8e-13 Score=115.81 Aligned_cols=185 Identities=18% Similarity=0.172 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHHHHHHHH----HHHHHHHHH-
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQL--------------VEAEKKKIRQEYERKEKQ----VEIRKKIEY- 70 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i--------------~~~~~~ki~~~~~~~~~~----~~~~k~~~~- 70 (230)
...-...++.+|+.+|.+|+.+|+.+++.-...+ +++++. +.|+....+ +.......+
T Consensus 38 ~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~---eGy~eG~~~G~~e~~~~~~~~i~ 114 (255)
T TIGR03825 38 EEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQ---EGYEAGFQAGESEALSIYQSTID 114 (255)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888888877433333 222211 112222211 111111000
Q ss_pred --HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHH
Q 026949 71 --SMQLNAS----RIKVLQAQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLV 142 (230)
Q Consensus 71 --S~~~~~~----R~~~l~ar~~~i~~v~~~a~~~L~~~-~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv 142 (230)
...+... ...+-..+.++++-++.-|..=+... ..+ +..+..|+.+++..++. +.++|+|+|.|.+.+
T Consensus 115 ~a~~i~~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el~~~----~e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v 190 (255)
T TIGR03825 115 EANAIVEEAKDDYEEKIESAQPLIIELACALAEKVIGVSLAED----KNAFQALVRQVLSEVREFDEVSIYVHPHWYERV 190 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----HHHHHHHHHHHHHhccCCCcEEEEECHHHHHHH
Confidence 0111112 11222345566666666666555554 333 45688999999998877 679999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHH
Q 026949 143 ESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIR 221 (230)
Q Consensus 143 ~~~l~~~~~~~~~~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~ 221 (230)
......+...++... .+.|..|+ . -..||++|.|.+|. ||+|+++||+.+++.++..+.
T Consensus 191 ~~~~~~l~~~~~~~~---~i~i~~D~--~-------------l~~GgcvIEt~~G~--iDasldtqLe~l~~~l~~~l~ 249 (255)
T TIGR03825 191 AAQKDELQSILPACE---HLAVYPDE--K-------------LPDGGCYVETNFGR--IDASVDTQLEQLKEKLLEALK 249 (255)
T ss_pred HHhHHHHHhhcCCCC---ceEEEeCC--C-------------CCCCCeEEEcCCce--EEeeHHHHHHHHHHHHHHHHh
Confidence 988776655554321 34555553 2 34699999999998 899999999999888876654
No 10
>PRK09098 type III secretion system protein HrpB; Validated
Probab=99.56 E-value=3e-12 Score=109.30 Aligned_cols=180 Identities=18% Similarity=0.181 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 8 KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK----EKQVEIRKKIEYSMQLNASRIKVLQ 83 (230)
Q Consensus 8 ~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~----~~~~~~~k~~~~S~~~~~~R~~~l~ 83 (230)
..+..-.+.|+..|+++|++|+.+|+++++ .|+++++.+.+..+++. ..++..+-...+.............
T Consensus 35 ~~~~~~~~~ila~Ar~~A~~Il~~A~~~A~----~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~~~~~~~~~~~~ 110 (233)
T PRK09098 35 AAVHAERDAVLAAARARAERIVAEARAQAE----AILEAARREADRSARRGYAAGLRQALAEWHARGADHAFAERRAARR 110 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999999999999888 77777766544433322 2322222111111111111112233
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhc--CCCcEEEEecccchHHHHHHHHHHHHHHHHhhCC-C
Q 026949 84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRL--KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV-H 160 (230)
Q Consensus 84 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l--~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~-~ 160 (230)
.++++++-++..++.-+... + +..|-..+.+++..+ +.+.++|+|+|.|.+.+...+......+ |+ .
T Consensus 111 ~e~~Lv~lv~~~v~kiv~~~--d----~~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~~----g~~~ 180 (233)
T PRK09098 111 MRERLAEIVAAAVEQIVLGE--D----RAALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAAG----GRNV 180 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhc--C----HHHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHhc----CCCc
Confidence 57788888888888777653 3 344455666777554 2367999999999999998877654433 22 1
Q ss_pred CCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHH
Q 026949 161 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP 218 (230)
Q Consensus 161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~ 218 (230)
.+.|..| ..|+ .||+++.+..|. ||+||++||+.+.+-+..
T Consensus 181 ~l~Iv~D--p~L~-------------~GgCviET~~G~--IDasl~~ql~~L~~al~~ 221 (233)
T PRK09098 181 PVEVVGD--PRLA-------------PGACVCEWDFGV--FDASLDTQLRALRRALAR 221 (233)
T ss_pred ceEEEeC--CCCC-------------CCCeEEEeCCCe--EecCHHHHHHHHHHHHHH
Confidence 2345555 3443 599999999998 899999999977766544
No 11
>PRK06937 type III secretion system protein; Reviewed
Probab=99.54 E-value=3.5e-12 Score=106.97 Aligned_cols=170 Identities=14% Similarity=0.188 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (230)
Q Consensus 14 ~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~ 93 (230)
...|+.+|+++|++|+..|+++++. ..+++ |+....++..+....+...............+++++=++
T Consensus 32 A~~il~~A~~~A~~i~~~A~~~~e~----~~~~G-------y~~G~~~a~~e~~e~l~~~~~~~~~~~~~~e~~l~~Lvl 100 (204)
T PRK06937 32 AEELVEAARQRAEEIEAEAQEVYEQ----QKQLG-------YQAGLDEARTEQAELILETVLQCQEFYRGVEQQMSEVVL 100 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999998873 22222 222222222111111111112222223344566777666
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCC
Q 026949 94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 172 (230)
Q Consensus 94 ~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~~L 172 (230)
.-+++=+..+. -+.++..++.+++..+.+ +.++|+|+|.|.+.+...+......+++. + .+.|..|+ .|
T Consensus 101 ~ia~kil~~~~-----~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~~~-~--~l~i~~D~--~L 170 (204)
T PRK06937 101 EAVRKILNDYD-----DVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFPEV-G--YLEVVADA--RL 170 (204)
T ss_pred HHHHHHHhccC-----cHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCCCC-c--cEEEEeCC--CC
Confidence 66655555432 267888999999998876 67999999999999998777655555431 1 24566663 33
Q ss_pred CCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHH
Q 026949 173 PPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPE 219 (230)
Q Consensus 173 ~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~ 219 (230)
..||++|.+..|. ||+||++||+.+.+.+...
T Consensus 171 -------------~~Ggc~iET~~G~--vDasl~tql~~l~~al~~~ 202 (204)
T PRK06937 171 -------------DQGGCILETEVGI--IDASLDGQLEALEQAFHST 202 (204)
T ss_pred -------------CCCCeEEecCCce--EEccHHHHHHHHHHHHHHH
Confidence 4699999999998 8999999999888776543
No 12
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=99.48 E-value=5.5e-11 Score=104.31 Aligned_cols=111 Identities=19% Similarity=0.316 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 026949 84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP 162 (230)
Q Consensus 84 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~ 162 (230)
...++++-++.-|..-+..+..+ .+.++..++.+++..+.+ +.++|+|+|.|.+++...+..+...+.... ++
T Consensus 164 ~e~elv~Lal~iaekvi~~~~~~---~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~l~~~~---~i 237 (281)
T PRK06669 164 SEEEIVELALDIAKKVIKEISEN---SKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISLLDNEE---HL 237 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHhcCCCC---Ce
Confidence 55667777777777666444433 588889999999998876 679999999999999998887766665322 45
Q ss_pred eEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcH
Q 026949 163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 217 (230)
Q Consensus 163 ~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~ 217 (230)
.|..|+ .| ..|||+|.+.+|. ||+|+++||+.+++.+.
T Consensus 238 ~I~~D~--~l-------------~~GgcvIet~~G~--IDasi~tqLe~l~~~L~ 275 (281)
T PRK06669 238 KIYEDD--AI-------------SKGGCVIETDFGN--IDARIDTQLKQLKEKLL 275 (281)
T ss_pred EEEECC--CC-------------CCCCeEEEcCCCe--eeccHHHHHHHHHHHHH
Confidence 666663 22 3599999999998 89999999998887664
No 13
>PRK06328 type III secretion system protein; Validated
Probab=99.46 E-value=6.9e-11 Score=100.41 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (230)
Q Consensus 14 ~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~ 93 (230)
.+.|+..|+++|++|+.+|.++++ ++.++++. +.|+....+...... .........+ -...+++++-++
T Consensus 31 A~~il~~a~~~ae~i~~ea~~e~E----~i~eeA~~---eGy~eG~~~~~~~~~-~l~~~~~~~~---~~~e~~lv~Lal 99 (223)
T PRK06328 31 AQELLEKTKEDSEAYTQETHEECE----KLREEAKN---QGFKEGSKAWSKQLA-FLEEETQKLR---EQVKEALVPLAI 99 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHH
Confidence 467899999999999999999988 55544432 233333222111110 0111111111 223567777777
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCC
Q 026949 94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 172 (230)
Q Consensus 94 ~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~~L 172 (230)
.-|+.=+..-... -++.+..++.+++..+.. ..++|+|+|.|.+++....+.+...+++.. .+.|..|+ .|
T Consensus 100 ~ia~kVi~~el~~---d~e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~~~---~~~I~~D~--~L 171 (223)
T PRK06328 100 ASVKKIIGKELEL---HPETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYAD---SLIISPKA--DV 171 (223)
T ss_pred HHHHHHHHHHHhh---CHHHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccCCC---ceEEEeCC--CC
Confidence 7777666553322 157777999999988866 579999999999999988776665555432 45677663 33
Q ss_pred CCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHH
Q 026949 173 PPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIR 221 (230)
Q Consensus 173 ~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~ 221 (230)
-.||++|.+..|. ||+|+++||+.+.+.+...+.
T Consensus 172 -------------~~GgCiIET~~G~--VDasle~ql~~l~~al~~~l~ 205 (223)
T PRK06328 172 -------------TPGGCIIETEAGI--INAQLDVQLAALEKAFSTILK 205 (223)
T ss_pred -------------CCCCeEEEeCCce--EEecHHHHHHHHHHHHHHHHc
Confidence 3599999999998 899999999988776655443
No 14
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=99.25 E-value=2.5e-09 Score=86.31 Aligned_cols=149 Identities=18% Similarity=0.140 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 026949 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKV-LQAQDDLVSN 91 (230)
Q Consensus 13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~-l~ar~~~i~~ 91 (230)
-...|+++|+.+|+.|+..|+++++..+..-.+++......+....+. .... .+..+ -.....+++-
T Consensus 14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~-----------~~~~-~~~~~~~~~e~~l~~l 81 (166)
T TIGR02499 14 QAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLA-----------EWQQ-EAEQLEASLEERLAEL 81 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH-HHHHHHHHHHHHHHHH
Confidence 577899999999999999999998854433333333222222221111 1111 11111 1123334433
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEecccc
Q 026949 92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI 170 (230)
Q Consensus 92 v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~ 170 (230)
++.-++.=|... ..+.++..++.+++..+.+ +.++|+|+|.|.+.+...+...... . +++|..|+
T Consensus 82 ~~~~~~kil~~~-----~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~~~----~---~~~i~~D~-- 147 (166)
T TIGR02499 82 VLQALEQILGEY-----DEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERLAL----E---PWELEPDA-- 147 (166)
T ss_pred HHHHHHHHhCCC-----CCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHhcc----C---CeEEeeCC--
Confidence 333333333332 2467888888888887776 6799999999999999887743211 1 13555552
Q ss_pred CCCCCCCCCCCCCCCcccceEEEecCCcEE
Q 026949 171 YLPPGPGHHNAHGPSCSGGVVVASRDGKIV 200 (230)
Q Consensus 171 ~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~ 200 (230)
. -..||++|.+.+|.|.
T Consensus 148 ~-------------l~~G~c~vet~~G~vd 164 (166)
T TIGR02499 148 S-------------LAPGACVLETESGVVD 164 (166)
T ss_pred C-------------CCCCCEEEEeCCceee
Confidence 2 3579999999999853
No 15
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=1.9e-08 Score=86.11 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 026949 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVE--IRKKIEYSMQLNASRIK 80 (230)
Q Consensus 3 ~~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~--~~k~~~~S~~~~~~R~~ 80 (230)
+++..+.+......+...+++.++.|...+++-|+ ...+.+.....++.. .+.. ..-...++...+ ....
T Consensus 39 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~e----eg~q~G~~eG~~~g~---~~~~~~e~~~~li~~~~~-~~~~ 110 (234)
T COG1317 39 EEELEQALEAKEEELESAAQELQEGIEEGAREGYE----EGFQLGYEEGFEEGQ---EEGRVLERLAKLIAEFQA-ELEA 110 (234)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHHH
Confidence 34567778888888999999999999988888766 444444333222211 1110 011111111111 1111
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-C-cEEEEecccchHHHHHHHHHHHHHHHHhh
Q 026949 81 VL-QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-P-AVLLRCRKDDHHLVESVLESAKEEYAQKL 157 (230)
Q Consensus 81 ~l-~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~-e~~v~~~~~D~~lv~~~l~~~~~~~~~~~ 157 (230)
+. .....+++-++.-+++=|...... -+..|..++.+++..... + .++++|+|.|.++++..++.+... .
T Consensus 111 ~~~~~e~qLv~lvl~ia~~Vi~~~~~~---~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~~~----~ 183 (234)
T COG1317 111 LKEVVEKQLVQLVLEIARKVIGKELEL---DPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEELSL----L 183 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhc---CHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHHhh----c
Confidence 11 245567777777777777666544 378899999999987766 3 799999999999999988754433 3
Q ss_pred CCCCCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHH
Q 026949 158 QVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI 220 (230)
Q Consensus 158 g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I 220 (230)
++ .++|..|+ .| -.||+++++..|. +|-|+++||..+.+.+.+..
T Consensus 184 ~~-~l~l~~D~--~l-------------~~GgC~IeTe~G~--iDasld~ql~~L~~~~~~~~ 228 (234)
T COG1317 184 GW-RLELVADP--AL-------------SPGGCIIETEFGI--IDASLDTQLAALKRALLESL 228 (234)
T ss_pred ch-heeeccCC--CC-------------CCCCeEEEecCcc--ccccHHHHHHHHHHHHHhhh
Confidence 33 12244442 33 4699999999998 79999999998888777654
No 16
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=99.04 E-value=2e-07 Score=80.40 Aligned_cols=171 Identities=12% Similarity=0.171 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS 90 (230)
Q Consensus 11 ~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~ 90 (230)
..-....+++|+.++.+|+.+|+.+++..+..++++++.++....+....+++.++.... -..+.++++
T Consensus 59 ~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~-----------~~l~~ei~~ 127 (246)
T TIGR03321 59 RREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALS-----------DELRRRTGA 127 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 334556777899999999999999999888888888877776655555444444333222 122333444
Q ss_pred HHHHHHHHHHHhhccChhHHHHHHHHHHHH--------------HHHhcCCCcEEEE-ecccchHHHHHHHHHHHHHHHH
Q 026949 91 NMMEAASKEVLNVSRDHNSYKKLLKGLIVQ--------------SLLRLKEPAVLLR-CRKDDHHLVESVLESAKEEYAQ 155 (230)
Q Consensus 91 ~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e--------------a~~~l~~~e~~v~-~~~~D~~lv~~~l~~~~~~~~~ 155 (230)
-++..|..-|....... ....++...|.+ ++.. ++..++|+ ..|=+......+... +..
T Consensus 128 la~~~A~kil~~~~d~~-~~~~lid~~i~~l~~l~~~~~~~l~~~~~~-~~~~~~v~sa~~l~~~~~~~i~~~----l~~ 201 (246)
T TIGR03321 128 EVFAIARKVLTDLADTD-LEERMVDVFVQRLRTLDPDEKAALAEALAD-SGNPVLVRSAFELPEEQREQIRDT----IRE 201 (246)
T ss_pred HHHHHHHHHHHHhcChH-HHHHHHHHHHHHhhcCCHHHHHHHHHHHhC-CCCceEEEecCCCCHHHHHHHHHH----HHH
Confidence 44444444333322111 222232222221 1111 12234443 333333333333333 333
Q ss_pred hhCCC-CCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949 156 KLQVH-PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (230)
Q Consensus 156 ~~g~~-~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~ 216 (230)
.+|+. .+++.+| ++.+|||+|.. |..++|+|+.++|+.+...+
T Consensus 202 ~~~~~v~~~~~vd----------------p~ligGi~l~~--g~~~id~Si~~~L~~l~~~~ 245 (246)
T TIGR03321 202 TLGPEIRLRFQTE----------------PDLIGGIELTA--GGHKLAWSVDDYLESLEEDV 245 (246)
T ss_pred HHCCCeeEEeeeC----------------chhcCceEEEE--CCEEEechHHHHHHHHHhhc
Confidence 33431 2333344 37899999997 88999999999999877653
No 17
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=98.95 E-value=3e-07 Score=76.42 Aligned_cols=153 Identities=21% Similarity=0.310 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN 91 (230)
Q Consensus 12 ~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~ 91 (230)
.....|+++|+.+|++|+.+|+++|+ .+++.+...+...+-.... ..+. .....|..+...-...+..
T Consensus 30 ~~a~~IL~~A~~qA~~Il~~Ae~eAe----~l~~~a~e~a~~~~~q~a~-------~ll~-~~~~~~e~l~~~l~~~~~~ 97 (191)
T PF06188_consen 30 QQAREILEDARQQAEQILQQAEEEAE----ALLEQAYEQAEAQFWQQAN-------ALLQ-EWQQQREQLLQQLEEQAEE 97 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-------HHHH-HHHHHHHHHHHHHHHHHHH
Confidence 35589999999999999999999998 6766555444433322111 0111 1112233444555666677
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 026949 92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY 171 (230)
Q Consensus 92 v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~~ 171 (230)
++..+..+|..-...+..+..++..|+... .+...++++|+|.+.+-|..++.+ ++. . .+++..| .+
T Consensus 98 ll~~al~~lL~e~~~~qrv~aLlr~l~~~~---~~~~~~tL~~hP~~~~~V~~~L~~----~~~-~---~w~l~~D--~s 164 (191)
T PF06188_consen 98 LLSQALERLLDETPDQQRVAALLRQLLASQ---RQESEATLRCHPDQLEEVAAWLAE----HPA-L---HWQLQAD--ES 164 (191)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHhc---ccccceEEEECHHHHHHHHHHHHh----CCC-c---ceeeccC--CC
Confidence 777777777664444446777787776554 345689999999999999988874 321 1 3566666 34
Q ss_pred CCCCCCCCCCCCCCcccceEEEecCCcEEEe
Q 026949 172 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCE 202 (230)
Q Consensus 172 L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vd 202 (230)
|+ .|..++.+..|.+.+|
T Consensus 165 l~-------------~~~l~L~t~~G~~~l~ 182 (191)
T PF06188_consen 165 LA-------------PDQLKLETANGEFRLD 182 (191)
T ss_pred CC-------------CCceEEEcCCCcEEEC
Confidence 54 4889999999996655
No 18
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=98.87 E-value=3e-07 Score=78.79 Aligned_cols=103 Identities=11% Similarity=0.193 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC--CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCC
Q 026949 85 QDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE--PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP 161 (230)
Q Consensus 85 r~~~i~~v~~~a~~~L~~~-~~~~~~Y~~~L~~Li~ea~~~l~~--~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~ 161 (230)
++.+++-++.-|+.-+..- ..+ +..+..++.+++..+.. ..++|+|+|.|..+++..+.+. .. .
T Consensus 121 ~~~ll~La~~iA~~vi~~el~~~----p~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e~------~~---~ 187 (236)
T PRK13386 121 RDELLDLVEKVTRQVIRCELTLQ----PQQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPEK------VQ---A 187 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhcc------cc---C
Confidence 4455555555555555442 333 56677999999999864 5799999999999998766531 11 4
Q ss_pred CeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcH
Q 026949 162 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 217 (230)
Q Consensus 162 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~ 217 (230)
++|..|+ .| -.||++|.+.+|. ||.|+++||+.+.+.+.
T Consensus 188 ~~l~~D~--~l-------------~~GgC~Iet~~g~--iDa~ietRl~~~~~~l~ 226 (236)
T PRK13386 188 WGLVADP--SL-------------SAGECRIVTDTSE--ADAGCEHRLDACMDAVK 226 (236)
T ss_pred eEEEeCC--Cc-------------CCCCEEEEeCCce--EeeCHHHHHHHHHHHHH
Confidence 6777774 33 3699999998888 89999999987655543
No 19
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=98.83 E-value=2.9e-07 Score=70.75 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHH-HhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCC
Q 026949 84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSL-LRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP 161 (230)
Q Consensus 84 ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~-~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~ 161 (230)
.++++++-++.-|..-+...... -+..+..+|.+++ ..+.. +.++|+|+|+|.+.++..+.+....+ +
T Consensus 25 ~~~~l~~l~~~iae~vi~~~l~~---~~~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~~~-------~ 94 (128)
T PF02108_consen 25 LEQELVELALAIAEKVIGRELEE---DPEAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELPEL-------G 94 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHhhc-------C
Confidence 56667777777666666543222 2567778888888 44444 57999999999999998877432222 3
Q ss_pred CeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHH
Q 026949 162 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 211 (230)
Q Consensus 162 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~ 211 (230)
++|..|+ .| -.||++|.+.+|. ||.|+++||+.
T Consensus 95 ~~l~~D~--~l-------------~~G~c~iet~~g~--iD~~i~~ql~~ 127 (128)
T PF02108_consen 95 WELVADP--SL-------------APGDCRIETEDGI--IDASIETQLEA 127 (128)
T ss_pred CEEEecC--CC-------------CCCCEEEEECCee--EEeCHHHHHhc
Confidence 5777774 33 3599999998887 89999999974
No 20
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=98.81 E-value=3e-06 Score=72.93 Aligned_cols=107 Identities=24% Similarity=0.302 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcC--CCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCC
Q 026949 85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP 162 (230)
Q Consensus 85 r~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~--~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~ 162 (230)
.+.+++-++.-|+.-+...... -+..+..+|.+++..+. .+.++|+|+|.|..+++..+.. .+. .. ++
T Consensus 134 e~~Lv~Lal~ia~~vi~~el~~---~~~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~~---~~~-~~---~~ 203 (246)
T PRK05687 134 ESRLVQLALELARQVIGQELKT---DPSAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLGA---ELS-LH---GW 203 (246)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc---CHHHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHhh---HHH-hC---Ce
Confidence 4556666666666655543322 25677789999999874 3579999999999999987763 222 12 46
Q ss_pred eEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHH
Q 026949 163 EIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP 218 (230)
Q Consensus 163 ~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~ 218 (230)
+|..|+ .| -.||++|.+.+|. ||.|+++||+.+.+.+.+
T Consensus 204 ~l~~D~--~l-------------~~Ggc~iet~~g~--vDa~l~~r~~~l~~~l~~ 242 (246)
T PRK05687 204 RLLADP--SL-------------HRGGCRISAEEGD--VDASLETRWQEVCRLLAP 242 (246)
T ss_pred EEEeCC--Cc-------------CCCCeEEEeCCCc--eeccHHHHHHHHHHHHhc
Confidence 777774 33 3699999999998 799999999988877653
No 21
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=98.57 E-value=3e-05 Score=64.79 Aligned_cols=110 Identities=13% Similarity=0.070 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCC
Q 026949 84 AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP 161 (230)
Q Consensus 84 ar~~~i~~v~~~a~~~L~~~-~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~ 161 (230)
.++++++=++.-++.-+... ..+| ...+..++.+++..+.+ +.++|+|+|.|.+.++..+......++. .| .
T Consensus 85 ~~~~lv~La~~iarkvi~~~l~~~p---~a~v~~~v~eal~~l~~~~~v~I~v~P~d~~~l~~~l~~~~~~~~~-~~--~ 158 (199)
T PRK06032 85 METEAADLALAVARKIAGAALAAEP---LAEITAAVRDCLRHLVATPHLVVRVNDALVEAARERLERLARESGF-EG--R 158 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHHHHHHHHHHhcCc-Cc--c
Confidence 34455555555555555443 3332 23577788888887766 5699999999999999888765444331 11 2
Q ss_pred CeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949 162 PEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (230)
Q Consensus 162 ~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~ 216 (230)
+.|..| ..|+ .||++|.+.+|+ +|+|+.+++..+.+-+
T Consensus 159 ~~l~~D--~~L~-------------~G~c~vet~~G~--vd~d~~~~~~~I~~al 196 (199)
T PRK06032 159 LVVLAD--PDMA-------------PGDCRLEWADGG--VVRDRAAIEARIEEAV 196 (199)
T ss_pred EEEeeC--CCCC-------------CCCeEEEeCCCe--EecCHHHHHHHHHHHh
Confidence 444444 3443 599999999999 7888888888766543
No 22
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=98.49 E-value=6.7e-05 Score=62.45 Aligned_cols=167 Identities=19% Similarity=0.188 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (230)
Q Consensus 15 ~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~ 94 (230)
..+...|+..|..|...|+..|+.++.+ .|+....+...+--+.++...-.....+..-.+++.+=++.
T Consensus 33 ~~~~aAA~~~A~~ir~~Ar~ayE~~rar-----------GyeeG~~~g~e~~A~llaqa~a~v~r~~a~LE~~l~~LVl~ 101 (207)
T PF06635_consen 33 AAFLAAARREAQRIREWARAAYERERAR-----------GYEEGRRAGAEQAARLLAQATAEVARYLAGLEQELAELVLE 101 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888743322 23222222111111112222111111344455778888888
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCC
Q 026949 95 AASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP 173 (230)
Q Consensus 95 ~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~~L~ 173 (230)
-+.+=|..|.. .++|.+.+.+++..+-. ..++|+|+|.|.+.+...+..+. .+ .|. .+|.|..+..|+
T Consensus 102 ~Vr~ILg~fd~-----~ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~~-~~---~g~--~~i~I~aDp~La 170 (207)
T PF06635_consen 102 IVRKILGEFDP-----DELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAALE-GR---PGR--PKIRIVADPRLA 170 (207)
T ss_pred HHHHHHhcCCh-----HHHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhhh-cc---CCC--CceeeecCCCCC
Confidence 88887778854 56777888888877665 57999999999999988776542 22 232 244444334554
Q ss_pred CCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHH
Q 026949 174 PGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLP 218 (230)
Q Consensus 174 ~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~ 218 (230)
.|.+|+.|.-|. ||-+|++-|+-++.-+.|
T Consensus 171 -------------~~~Cvlese~G~--VdagL~aQL~ALr~a~~~ 200 (207)
T PF06635_consen 171 -------------AGQCVLESEFGV--VDAGLDAQLRALRLAFGP 200 (207)
T ss_pred -------------CCCeeeecccch--hhccHHHHHHHHHHHhcc
Confidence 489999999998 799999999988877665
No 23
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=98.28 E-value=2.6e-05 Score=63.45 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i 89 (230)
+..-...++.+|+.+|.+|+..|+.+++..+..++++++..+....+ ...+......+..+...|++++
T Consensus 75 ~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~-----------~a~~~ie~Ek~~a~~elk~eii 143 (167)
T PRK08475 75 KKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIK-----------SFEELMEFEVRKMEREVVEEVL 143 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888888888888887776776665555433322 2334444455667788999999
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHH
Q 026949 90 SNMMEAASKEVLNVSRDHNSYKKLLKG 116 (230)
Q Consensus 90 ~~v~~~a~~~L~~~~~~~~~Y~~~L~~ 116 (230)
+++|+. +|.+++.+ .|.+++.+
T Consensus 144 ~~~~~~---~~~~l~~~--~y~~~~~~ 165 (167)
T PRK08475 144 NELFES---KKVSLNQQ--EYVNILLK 165 (167)
T ss_pred HHHHHh---hhcCCCHH--HHHHHHhc
Confidence 999999 88888876 79999865
No 24
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=98.24 E-value=0.0011 Score=57.43 Aligned_cols=166 Identities=15% Similarity=0.149 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (230)
Q Consensus 14 ~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~ 93 (230)
-..-+++|+.++.+|+.+|+.+++.++..++.+++..+....++...+++.+++. ..-..+.++.+-++
T Consensus 62 ~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~-----------a~~~L~~~v~~la~ 130 (250)
T PRK14474 62 YRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQE-----------FFKALQQQTGQQMV 130 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 3445668888888888888888888888887777766655554443333333322 22233455566666
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHH----------HH--hcCCCcEEEEe----cccchHHHHHHHHHHHHHHHH-h
Q 026949 94 EAASKEVLNVSRDHNSYKKLLKGLIVQS----------LL--RLKEPAVLLRC----RKDDHHLVESVLESAKEEYAQ-K 156 (230)
Q Consensus 94 ~~a~~~L~~~~~~~~~Y~~~L~~Li~ea----------~~--~l~~~e~~v~~----~~~D~~lv~~~l~~~~~~~~~-~ 156 (230)
.-|..-|.+..... ....++...+.+- +. .-++..++|+. .|.+...+...+. . .
T Consensus 131 ~~A~kiL~~~~d~~-~~~~lid~~i~~l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~~~~~~~~~~~l~-------~~~ 202 (250)
T PRK14474 131 KIIRAALADLANAT-LEQQIVGIFIARLEHLSEAERQALANSNTTPEMLRIRTSFELSQDLRAQILESLH-------QTH 202 (250)
T ss_pred HHHHHHHHhhcCHH-HHHHHHHHHHHHhcccCHHHHHHHHhhhcCCCCeEEEeCCCCCHHHHHHHHHHHH-------HHh
Confidence 66666665544332 3444444444221 11 01222344442 2333333333333 2 2
Q ss_pred hCCCCCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHh
Q 026949 157 LQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRK 215 (230)
Q Consensus 157 ~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~ 215 (230)
.|. ++.+.+.. + ++.++|+-+.. |+-.|.|||++-|+..-+.
T Consensus 203 ~~~-~~~~~f~~------~--------p~li~Giel~~--~~~~i~ws~~~yl~~l~~~ 244 (250)
T PRK14474 203 LIP-GTDIHFVT------S--------PELICGIELKT--EGYKIAWTLAEYLDALESQ 244 (250)
T ss_pred cCC-CCceeeec------C--------cccccCeEEec--CCceEeccHHHHHHHHHHH
Confidence 233 33444432 1 37799999997 6677999999999865443
No 25
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=97.50 E-value=0.045 Score=46.06 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE 69 (230)
Q Consensus 5 ~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~ 69 (230)
+.-...+.-...|+.+|+.+|++|+.+|+.+++ +++..++.++..+..+....+++..+..
T Consensus 20 eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe----~ii~~A~~eae~ek~r~~s~a~l~~R~~ 80 (207)
T PRK01005 20 ETLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAE----KIIRSAEETADQKLKQGESALVQAGKRS 80 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778889999999999999999999987 8988888888888777666666554433
No 26
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=97.16 E-value=0.0062 Score=49.98 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=27.9
Q ss_pred CCcccceEEEecCCcEEEeccHHHHHHHHHHhcH
Q 026949 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 217 (230)
Q Consensus 184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~ 217 (230)
++++|||++.. |.-++|.|+.++|+.+...+.
T Consensus 147 pslIGGi~i~~--gd~viD~Sik~~L~~l~~~l~ 178 (179)
T PRK13436 147 PKLIAGIKIKV--DNKVFENSIKSKLKELKKQVL 178 (179)
T ss_pred HHHcCceEEEE--CCEEeehhHHHHHHHHHHHHh
Confidence 48999999997 888899999999998877653
No 27
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=97.09 E-value=0.035 Score=41.52 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLN 75 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~ 75 (230)
.+.--..++.+|+.++..|+..|..+++..+..++.++......-.+....+++..+...++....
T Consensus 11 aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~ 76 (103)
T PRK08404 11 AEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEK 76 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777777777777777766666666665555544444444555555444444333
No 28
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=97.00 E-value=0.07 Score=43.47 Aligned_cols=95 Identities=8% Similarity=0.116 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM 92 (230)
Q Consensus 13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v 92 (230)
-....+++|+.+|.+|+..|+.+++..+..++.++...+....+.....++..+ ....-..+.++++.+
T Consensus 75 ~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~-----------~~a~~~l~~qi~~la 143 (174)
T PRK07352 75 EAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQ-----------ERVIAQLRREAAELA 143 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 445567888888888888888888877767766665555443333322222222 223344567888888
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHH
Q 026949 93 MEAASKEVLNVSRDHNSYKKLLKGLIV 119 (230)
Q Consensus 93 ~~~a~~~L~~~~~~~~~Y~~~L~~Li~ 119 (230)
+..|...|..-..+. ....++...|.
T Consensus 144 ~~~A~kil~~~l~~~-~~~~li~~~i~ 169 (174)
T PRK07352 144 IAKAESQLPGRLDED-AQQRLIDRSIA 169 (174)
T ss_pred HHHHHHHHHhHcCHH-HHHHHHHHHHH
Confidence 888888887644332 45555544443
No 29
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=96.98 E-value=0.034 Score=46.41 Aligned_cols=59 Identities=24% Similarity=0.222 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK 67 (230)
Q Consensus 5 ~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~ 67 (230)
+.-.+-+.-...|+++|+++|++|+.+|+++++ .|+..+...+..........+...++
T Consensus 15 ~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe----~i~~kAe~ea~~~~~~~~saa~l~~r 73 (198)
T PRK01558 15 DGLEEAERLANEIILEAKEEAEEIIAKAEEEAK----ELKAKAEKEANDYKRHALEASRQAGR 73 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566778899999999999999999999988 77777776666443443444444333
No 30
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=96.95 E-value=0.072 Score=44.12 Aligned_cols=129 Identities=16% Similarity=0.204 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 026949 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK--------IEYSMQLN 75 (230)
Q Consensus 4 ~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~--------~~~S~~~~ 75 (230)
.++.++.+.-.+.|+.+|+.+|++|+.+|.++++.+...++..++..+..+..+....+..+.+ ..++....
T Consensus 9 ~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~ 88 (198)
T PRK03963 9 QEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLE 88 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888999999999999999999999999888889888887777665554444333222 22233334
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHh----hccChhHHHHHHHHHHHHHHHhcCCCcEEEEec
Q 026949 76 ASRIKVLQ----AQDDLVSNMMEAASKEVLN----VSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCR 135 (230)
Q Consensus 76 ~~R~~~l~----ar~~~i~~v~~~a~~~L~~----~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~ 135 (230)
.++.++.+ ....++..++..+...|.. +..+|.+ ..++..++.+....++ .+.+.+.
T Consensus 89 ~a~~~l~~~~~~~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D-~~~~~~~~~~~~~~~~--~~~i~~~ 153 (198)
T PRK03963 89 AVRERLAELPEDEYFETLKALTKEAVEELGEDKVVVRSNERT-LKLIDSRLEEIRDELG--DVEIELG 153 (198)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCcEEEEEcccc-HHHHHHHHHHHHHHhC--CeEEEEC
Confidence 44433322 1335666666666666542 2223312 2466666555444443 4455544
No 31
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=96.87 E-value=0.11 Score=42.38 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN 91 (230)
Q Consensus 12 ~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~ 91 (230)
.-....+.+|+.+|.+|+..|..+++..+..++.++...+....+....+++.+++. .+-..+.++.+-
T Consensus 71 ~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~-----------a~~el~~ei~~l 139 (173)
T PRK13460 71 KDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGK-----------ALSQLQNQIVEM 139 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 345566788888888888888888886666666666555544433333332222221 223345667777
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 026949 92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (230)
Q Consensus 92 v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e 120 (230)
++.-|..-|.+.... +....++...|.+
T Consensus 140 A~~~a~kil~~~l~~-~~~~~lid~~i~~ 167 (173)
T PRK13460 140 TITIASKVLEKQLKK-EDYKAFIETELAK 167 (173)
T ss_pred HHHHHHHHHHHHCCH-HHHHHHHHHHHHH
Confidence 777777777664432 2445555444443
No 32
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=96.87 E-value=0.092 Score=44.08 Aligned_cols=99 Identities=20% Similarity=0.140 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i 89 (230)
+..-.+..+++|+.+|.+|+..|+.+++..+..++.+++.++....+....+++.++ +......+.++.
T Consensus 101 ~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek-----------~~a~~~Lk~ei~ 169 (205)
T PRK06231 101 LLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKER-----------RELKEQLQKESV 169 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 334456677888888888888888888866666666555544433333322222222 112234466677
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 026949 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (230)
Q Consensus 90 ~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e 120 (230)
+-...-|..-|.+-. +++....++.+.|.+
T Consensus 170 ~lAv~iA~kiL~k~l-d~~~~~~lI~~~i~~ 199 (205)
T PRK06231 170 ELAMLAAEELIKKKV-DREDDDKLVDEFIRE 199 (205)
T ss_pred HHHHHHHHHHHHhhC-CHHHHHHHHHHHHHH
Confidence 777777777666543 222455555555543
No 33
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=96.84 E-value=0.055 Score=44.68 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRK 66 (230)
Q Consensus 4 ~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k 66 (230)
.++.++.+.-...|+.+|+.+|++|+.+|+++++..+..+.......+....++....+++..
T Consensus 8 ~~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~ 70 (185)
T PRK01194 8 KDIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEA 70 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 456777888899999999999999999999999988888888877777777777766655543
No 34
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=96.81 E-value=0.13 Score=42.36 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN 91 (230)
Q Consensus 12 ~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~ 91 (230)
.-....+.+|+.+|.+|+..|+.+++..+..++.++...+....+....+++.+++ ...-..+.++.+-
T Consensus 79 ~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~-----------~a~~~l~~ei~~l 147 (184)
T CHL00019 79 EKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQ-----------RAINQVRQQVFQL 147 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 34456788888888888888888888777777777666655444433333322222 1334456777788
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 026949 92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (230)
Q Consensus 92 v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e 120 (230)
++..|..-|.+.. +++.-..++...|.+
T Consensus 148 av~~A~kil~~~l-d~~~~~~lid~~i~~ 175 (184)
T CHL00019 148 ALQRALGTLNSCL-NNELHLRTINANIGL 175 (184)
T ss_pred HHHHHHHHHHhHc-CHHHHHHHHHHHHHH
Confidence 8888888777754 322455555555544
No 35
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=96.81 E-value=0.037 Score=45.55 Aligned_cols=58 Identities=24% Similarity=0.239 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ 61 (230)
Q Consensus 4 ~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~ 61 (230)
+++.++-+.-.+.|+.+|+.++++|+.+|+++++..+..+...+.........+....
T Consensus 8 ~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~ 65 (188)
T PRK02292 8 EDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSS 65 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888999999999999999999999998555555555544444444333333
No 36
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=96.77 E-value=0.14 Score=41.21 Aligned_cols=99 Identities=11% Similarity=0.125 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i 89 (230)
+..-....+.+|+.+|.+|+..|..+++..+..++.++..++....+....+++..+.. ..-..+.++.
T Consensus 61 ~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~-----------a~~~L~~~i~ 129 (164)
T PRK14473 61 AKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQR-----------MLSELKSQIA 129 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 44455677788888888888888888887777777776666554444433333333221 2233455666
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHH
Q 026949 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120 (230)
Q Consensus 90 ~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~e 120 (230)
+-.+.-|..-|..-. +++....++...|.+
T Consensus 130 ~la~~~a~kil~~~l-~~~~~~~li~~~i~~ 159 (164)
T PRK14473 130 DLVTLTASRVLGAEL-QARGHDALIAESLAA 159 (164)
T ss_pred HHHHHHHHHHHHhHc-CHHHHHHHHHHHHHh
Confidence 666666666554422 222455555554443
No 37
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=96.69 E-value=0.18 Score=40.32 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS 90 (230)
Q Consensus 11 ~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~ 90 (230)
..-....+.+|+.+|.+|+.+|+.+++..+..++.++...+..-.+....+++..+. ......+.++.+
T Consensus 59 ~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~-----------~a~~~l~~ei~~ 127 (159)
T PRK13461 59 KLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKE-----------KAEYEIKNQAVD 127 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 334466778888888888888888888777777777666554444333222222221 122334556666
Q ss_pred HHHHHHHHHHHhhccChhHHHHHHHHHHH
Q 026949 91 NMMEAASKEVLNVSRDHNSYKKLLKGLIV 119 (230)
Q Consensus 91 ~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ 119 (230)
-.+.-|..-|...... +....++...|.
T Consensus 128 lA~~~a~kil~~~~~~-~~~~~li~~~i~ 155 (159)
T PRK13461 128 LAVLLSSKALEESIDE-SEHRRLIKDFIS 155 (159)
T ss_pred HHHHHHHHHHHhHcCH-HHHHHHHHHHHh
Confidence 6666666666554432 244444444443
No 38
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=96.68 E-value=0.049 Score=47.70 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=27.5
Q ss_pred CCcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (230)
Q Consensus 184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~ 216 (230)
++++|||+|.- |.-++|+|+.++|+.+...+
T Consensus 239 psLIGGivI~v--Gd~viD~Sv~~rL~~L~~~L 269 (271)
T PRK13430 239 PSVLGGMRVQV--GDEVIDGSVAGRLERLRRRL 269 (271)
T ss_pred ccccCcEEEEE--CCEEEehhHHHHHHHHHHHh
Confidence 38999999997 88899999999999887765
No 39
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=96.64 E-value=0.021 Score=46.98 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=28.6
Q ss_pred CCcccceEEEecCCcEEEeccHHHHHHHHHHhcH
Q 026949 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 217 (230)
Q Consensus 184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~ 217 (230)
++++|||++.. |..++|.|+.++|+.+...+.
T Consensus 143 psLIGG~ii~i--gd~viD~Svk~~L~~l~~~l~ 174 (184)
T PRK13434 143 KNLLGGFVVQF--NDLKIEKSIASQLGEIKKAML 174 (184)
T ss_pred hHHcCceEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence 48899999997 888899999999999888774
No 40
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=96.58 E-value=0.2 Score=37.71 Aligned_cols=47 Identities=30% Similarity=0.333 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026949 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (230)
Q Consensus 11 ~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~ 57 (230)
..-...|..+|+.+|.+|+.+|+.++...++.+++.+...+..+-..
T Consensus 27 kEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~e 73 (108)
T COG2811 27 KEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEE 73 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666665555555555555554444443333
No 41
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=96.51 E-value=0.039 Score=51.64 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=27.5
Q ss_pred CCcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (230)
Q Consensus 184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~ 216 (230)
++++|||+|.- |..++|.|+.+||+.+...+
T Consensus 413 psLiGGivI~v--Gd~viD~Sv~~rL~~l~~~l 443 (445)
T PRK13428 413 PELLGGLSIAV--GDEVIDGTLSSRLAAAEAQL 443 (445)
T ss_pred chhhCceEEEE--CCEEeehhHHHHHHHHHhhC
Confidence 48999999997 88999999999999887654
No 42
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=96.46 E-value=0.31 Score=39.71 Aligned_cols=94 Identities=15% Similarity=0.200 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM 92 (230)
Q Consensus 13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v 92 (230)
--+..+.+|+.+|.+|+..|+.+++..+..++.++...+....+....+++.++ ....-..+.++.+-.
T Consensus 74 e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~-----------~~a~~~l~~~i~~lA 142 (175)
T PRK14472 74 KNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEK-----------RRALDVLRNEVADLA 142 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 345566777777777777777777755555555554444333322222222111 112233455555666
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHH
Q 026949 93 MEAASKEVLNVSRDHNSYKKLLKGLI 118 (230)
Q Consensus 93 ~~~a~~~L~~~~~~~~~Y~~~L~~Li 118 (230)
+..|..-|...... +....++...|
T Consensus 143 ~~~a~kil~~~l~~-~~~~~li~~~i 167 (175)
T PRK14472 143 VKGAEKIIRTSLDA-DKQKKVVDSMI 167 (175)
T ss_pred HHHHHHHHHHHCCH-HHHHHHHHHHH
Confidence 66666555554322 23444444443
No 43
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=96.44 E-value=0.32 Score=38.55 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i 89 (230)
+..-....+.+|+.++.+|+..|..+++..+..++..+...+....+....++...+ ....-..+.+++
T Consensus 57 ~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~-----------~~a~~~l~~~~~ 125 (156)
T PRK05759 57 AQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQER-----------KRAREELRKQVA 125 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 344556677788888888888888888766666666655554433333322222221 112234456666
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHH
Q 026949 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLI 118 (230)
Q Consensus 90 ~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li 118 (230)
+-++.-|..-|...... +.-..++...|
T Consensus 126 ~lA~~~a~k~l~~~~d~-~~~~~~i~~~i 153 (156)
T PRK05759 126 DLAVAGAEKILGRELDA-AAQSDLIDKLI 153 (156)
T ss_pred HHHHHHHHHHHHhHcCH-HHHHHHHHHHH
Confidence 77777776666654322 23444444444
No 44
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=96.35 E-value=0.41 Score=38.49 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV 89 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i 89 (230)
+..-.+..+.+|+.++.+|+..|+.+++..+..++.++..++....++...+++.++ ....-..+.++.
T Consensus 61 ~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek-----------~~a~~~l~~~i~ 129 (164)
T PRK14471 61 LQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEK-----------NAAMAEIKNQVA 129 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 334445567778888888888888777744444444443333322222212221111 112233455666
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q 026949 90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIV 119 (230)
Q Consensus 90 ~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ 119 (230)
+-++.-|..-|..-..+++.-..++...|.
T Consensus 130 ~la~~~a~kil~~~l~~~~~~~~lid~~i~ 159 (164)
T PRK14471 130 NLSVEIAEKVLRKELSNKEKQHKLVEKMLG 159 (164)
T ss_pred HHHHHHHHHHHHHHcCcHhHHHHHHHHHHH
Confidence 666666666665522221133444444443
No 45
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=96.32 E-value=0.26 Score=46.18 Aligned_cols=78 Identities=17% Similarity=0.091 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM 93 (230)
Q Consensus 14 ~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~ 93 (230)
-+.++++|+.+|.+|+.+|+++++..+..++.++..++....+....+++.+++. .+-..|.++.+-++
T Consensus 58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~-----------a~~elr~ei~~lAv 126 (445)
T PRK13428 58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQ-----------LTRQLRLELGHESV 126 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 4457788888888888888888886666666665555444443333333333222 22233445555555
Q ss_pred HHHHHHHHh
Q 026949 94 EAASKEVLN 102 (230)
Q Consensus 94 ~~a~~~L~~ 102 (230)
..|.+-|.+
T Consensus 127 ~~A~kil~~ 135 (445)
T PRK13428 127 RQAGELVRN 135 (445)
T ss_pred HHHHHHHHH
Confidence 555555543
No 46
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=96.32 E-value=0.38 Score=37.79 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~ 52 (230)
+..-....+.+|+.+|.+|+..|+.+++..+..++.+....+.
T Consensus 48 ~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~ 90 (147)
T TIGR01144 48 AQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREERE 90 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777888888888888888877555555555444443
No 47
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=96.26 E-value=0.48 Score=38.54 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026949 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (230)
Q Consensus 13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~ 55 (230)
--+..+.+|+.+|.+|+.+|+.+++..+..++.+++..+....
T Consensus 74 e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~ 116 (173)
T PRK13453 74 ENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMI 116 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777666666666555544333
No 48
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=96.22 E-value=0.19 Score=36.08 Aligned_cols=34 Identities=21% Similarity=0.078 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 026949 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLV 44 (230)
Q Consensus 11 ~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~ 44 (230)
+.-...++.+|+.+|.+|+..|..+++.....++
T Consensus 8 e~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~ 41 (85)
T TIGR02926 8 EEDAEELIEEAEEERKQRIAEAREEARELLEEAE 41 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666663333333
No 49
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=96.16 E-value=0.58 Score=38.38 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (230)
Q Consensus 16 ~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~ 95 (230)
.-+++|+.+|.+|+..|+.+++.....++......+....+....+++..+ ...+-..|.++.+-.+..
T Consensus 86 ~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek-----------~~a~~~l~~~i~~lA~~~ 154 (184)
T PRK13455 86 RKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAE-----------AAAVKAVRDRAVSVAVAA 154 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666544434433333322222221111111111 112223455566666666
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHH
Q 026949 96 ASKEVLNVSRDHNSYKKLLKGLIVQ 120 (230)
Q Consensus 96 a~~~L~~~~~~~~~Y~~~L~~Li~e 120 (230)
|..-|..-. ++.....++...|.+
T Consensus 155 a~kil~~~l-~~~~~~~lid~~i~~ 178 (184)
T PRK13455 155 AADVIAKQM-TAADANALIDEAIKE 178 (184)
T ss_pred HHHHHhhcC-CHHHHHHHHHHHHHH
Confidence 666554433 222444555555444
No 50
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=96.14 E-value=0.67 Score=38.89 Aligned_cols=121 Identities=16% Similarity=0.161 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM 92 (230)
Q Consensus 13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v 92 (230)
-..-|++.|..+|.+|+..|..+-. .+..+.....+.-...-..+.+ ....+..-.-|-.-+++...+
T Consensus 42 ~s~~il~~A~rkA~~I~q~A~~~~~----~ll~qaqqqad~L~~~~~~~~E--------~~~L~qHV~wLve~e~lE~sL 109 (224)
T PRK15354 42 VSHAIVSSAYRKAEKIIRDAYRYQR----EQKVEQQQELACLRKNTLEKME--------VEWLEQHVKHLQEDENQFRSL 109 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhHHHHHHH
Confidence 3457899999999999998887633 4544433322211111111111 111122222233333333333
Q ss_pred HHHHHHHHHh--------hccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHH
Q 026949 93 MEAASKEVLN--------VSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV 145 (230)
Q Consensus 93 ~~~a~~~L~~--------~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~ 145 (230)
...+.+++.. -.+.-+-=.-+...|-.+......++.++++|+|.+.+.+...
T Consensus 110 V~~~~~~I~~aI~~VltaW~gQQ~isq~Li~RLa~Qv~~mA~eg~LtL~VHP~~~~am~~a 170 (224)
T PRK15354 110 VDHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIHPEKEALMRET 170 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCceEEEECHHHHHHHHHH
Confidence 3333333332 1111112345566777777777777899999999998877653
No 51
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=96.08 E-value=0.43 Score=39.06 Aligned_cols=41 Identities=34% Similarity=0.345 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK 50 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~k 50 (230)
.+.-++.|..+|+++++.|+.+|.+++......++......
T Consensus 6 A~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~ 46 (198)
T PF01991_consen 6 AQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKE 46 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443333333333333
No 52
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=95.99 E-value=0.47 Score=38.10 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQE 54 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~ 54 (230)
+..-....+.+|+.+|.+|+.+|+++++ ++.++...+...+
T Consensus 57 l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~----~~~~ea~~eA~~e 97 (154)
T PRK06568 57 LFEQTNAQIKKLETLRSQMIEESNEVTK----KIIQEKTKEIEEF 97 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4444556677788888888888877776 4444444444333
No 53
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=95.97 E-value=0.67 Score=37.46 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM 92 (230)
Q Consensus 13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v 92 (230)
-.+..+.+|+.+|.+|+.+|..+++.....++..+...+..-.+....+++.. ....+-..|.++.+-+
T Consensus 66 ~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e-----------~~~a~~el~~e~~~lA 134 (167)
T PRK14475 66 DVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQA-----------EAQAAADVKAAAVDLA 134 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 34455566666666677666666664444443333222221111111111111 1112233455666666
Q ss_pred HHHHHHHHHh-hccChhHHHHHHHHHHHH
Q 026949 93 MEAASKEVLN-VSRDHNSYKKLLKGLIVQ 120 (230)
Q Consensus 93 ~~~a~~~L~~-~~~~~~~Y~~~L~~Li~e 120 (230)
+..|..-|.. ++.. ....++...|.+
T Consensus 135 v~~A~kil~~~l~~~--~~~~lid~~i~~ 161 (167)
T PRK14475 135 AQAAETVLAARLAGA--KSDPLVDAAIGQ 161 (167)
T ss_pred HHHHHHHHHhHcCHH--HHHHHHHHHHHH
Confidence 6666666633 4332 345555555544
No 54
>PRK09098 type III secretion system protein HrpB; Validated
Probab=95.92 E-value=0.64 Score=39.82 Aligned_cols=51 Identities=20% Similarity=0.111 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026949 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (230)
Q Consensus 5 ~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~ 55 (230)
++-.+.....+.|+.+|+++|++|+.+|+++|+..+.+=..++..+...++
T Consensus 43 ~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~ 93 (233)
T PRK09098 43 AVLAAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEW 93 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777888888888888888777544443333444333333
No 55
>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]
Probab=95.67 E-value=0.13 Score=42.21 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=26.8
Q ss_pred CCcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (230)
Q Consensus 184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~ 216 (230)
.+.+||+++.. |..++|.|+.++|.++...+
T Consensus 147 ~sliGG~iI~v--gd~viD~Svr~~L~~l~~~l 177 (178)
T COG0712 147 PSLIGGLIIKV--GDEVIDGSVRGKLKRLAKAL 177 (178)
T ss_pred HHHhCceEEEE--CCEEEechHHHHHHHHHHhc
Confidence 38899999997 88899999999999876543
No 56
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=95.66 E-value=0.51 Score=33.80 Aligned_cols=47 Identities=28% Similarity=0.300 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE 69 (230)
Q Consensus 19 ~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~ 69 (230)
.+|+.++++++..|+.++. .|+..++......+.....++.......
T Consensus 5 k~ae~~~~~~l~~A~~ea~----~Ii~~A~~~A~~~~~~a~~~A~~ea~~i 51 (85)
T TIGR02926 5 KKAEEDAEELIEEAEEERK----QRIAEAREEARELLEEAEEEASKLGEEI 51 (85)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777666 6776666666666665555555544433
No 57
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=95.66 E-value=0.88 Score=36.66 Aligned_cols=44 Identities=30% Similarity=0.249 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026949 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK 58 (230)
Q Consensus 11 ~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~ 58 (230)
..-...-+.+|+.+|.+|+..|..+++. +.++...+.+.+.++.
T Consensus 60 ~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~----~~~e~~~~a~~e~~r~ 103 (161)
T COG0711 60 LAEYEQELEEAREQASEIIEQAKKEAEQ----IAEEIKAEAEEELERI 103 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3445566777888888888888888773 4333344444444433
No 58
>PRK13441 F0F1 ATP synthase subunit delta; Provisional
Probab=95.59 E-value=0.27 Score=40.14 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=28.0
Q ss_pred CCcccceEEEecCCcEEEeccHHHHHHHHHHhcH
Q 026949 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 217 (230)
Q Consensus 184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~ 217 (230)
++++|||++.. |.-++|.|+.++|..+...++
T Consensus 146 ~sliGG~~i~i--g~~~~D~Sik~~L~~l~~~l~ 177 (180)
T PRK13441 146 ESLIAGAVVEF--EGKRLDVTVQGRLKKIAREVL 177 (180)
T ss_pred hHHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHh
Confidence 37899999997 778899999999998887764
No 59
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=95.53 E-value=0.73 Score=34.69 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026949 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (230)
Q Consensus 14 ~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~ 57 (230)
......+|++.++.|+..|++++. .|+.+...++...++.
T Consensus 19 ad~~IeeAkEe~~~~i~eAr~ear----eiieeaE~eA~~~~~e 58 (108)
T COG2811 19 ADEEIEEAKEEAEQIIKEAREEAR----EIIEEAEEEAEKLAQE 58 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 344455566666666666666555 5555555444444443
No 60
>PRK15322 invasion protein OrgB; Provisional
Probab=95.44 E-value=1.3 Score=37.02 Aligned_cols=159 Identities=11% Similarity=0.065 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM 92 (230)
Q Consensus 13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v 92 (230)
-...|.++|+.+|.+|+.+|+.+++ .|...+. ...|...+.++...-.. -+...-....++..+|
T Consensus 13 ~a~~l~~qA~~kA~~ii~qA~~eaE----~ir~~A~---~~GYq~Gl~qa~~~la~--------~~a~~~~l~~~l~~~i 77 (210)
T PRK15322 13 SAERLEQQARRRAKRILRQAEEEAE----TLRMYAY---QEGYEQGMIDALQQVAA--------YLTDNQTMAWKWMEKI 77 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 4567899999999999999999988 6655443 35566655543322211 0111111233566666
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC--CcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEecccc
Q 026949 93 MEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE--PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI 170 (230)
Q Consensus 93 ~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~--~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd~~~ 170 (230)
-+.++.-|...-.+| ++|-.++.+=+..+.. ..+.|++-++-......+-. .|.+.. ++++.+.-
T Consensus 78 e~~~r~lls~~Ld~p----d~LL~~le~Wl~~l~~~~~pL~l~lP~~ak~~~~~L~~----~l~e~w---~~~~~i~y-- 144 (210)
T PRK15322 78 QIYARELFSAAVDHP----ETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMV----LLMENW---PGTFNLKY-- 144 (210)
T ss_pred HHHHHHHHHHHccCH----HHHHHHHHHHHHhCccccCceeEecChhhhhhHHHHHH----HHHHhc---CCCeEEEE--
Confidence 666666665555554 4555555553333322 35667765533333333322 333322 34444432
Q ss_pred CCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHh
Q 026949 171 YLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRK 215 (230)
Q Consensus 171 ~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~ 215 (230)
.-.-+||+++ |.-.+.-+=..-++.+...
T Consensus 145 --------------hd~~rFV~~~--g~qIaEFsPq~~v~~a~~~ 173 (210)
T PRK15322 145 --------------HQEQRFIMSC--GDQIAEFSPEQFVETAVGV 173 (210)
T ss_pred --------------cCCCceEEEe--CCchhccCHHHHHHHHHHH
Confidence 1246788887 5555666655555555443
No 61
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=95.41 E-value=1 Score=36.01 Aligned_cols=97 Identities=25% Similarity=0.261 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNM 92 (230)
Q Consensus 13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v 92 (230)
-...-+..|+.+|.+|+..|+.+++ .++++...++....++....++.. ........+-..|.++.+-.
T Consensus 58 ~~e~~L~~A~~ea~~ii~~A~~~a~----~~~~~a~~~a~~~~~~~~~~a~~~-------I~~ek~~a~~el~~~~~~lA 126 (159)
T PRK09173 58 EYQRKRKEAEKEAADIVAAAEREAE----ALTAEAKRKTEEYVARRNKLAEQK-------IAQAETDAINAVRSSAVDLA 126 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777766 444444444444333322221111 11111112334456666667
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHHH
Q 026949 93 MEAASKEVLNVSRDHNSYKKLLKGLIVQS 121 (230)
Q Consensus 93 ~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea 121 (230)
+..|..-|..-. +++....++...|.+.
T Consensus 127 ~~~A~kil~~~l-~~~~~~~li~~~i~~~ 154 (159)
T PRK09173 127 IAAAEKLLAEKV-DAKAASELFKDALAQV 154 (159)
T ss_pred HHHHHHHHHhhc-CHHHHHHHHHHHHHHH
Confidence 777776665533 3224566666666553
No 62
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=95.40 E-value=1.1 Score=35.82 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 73 QLNASRIKVLQAQDDLVSNMMEAAS 97 (230)
Q Consensus 73 ~~~~~R~~~l~ar~~~i~~v~~~a~ 97 (230)
....++..+...|+..+.++...+.
T Consensus 99 ~~~~a~~~I~~ek~~a~~el~~~~~ 123 (159)
T PRK09173 99 RNKLAEQKIAQAETDAINAVRSSAV 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454555555555555444433
No 63
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=95.33 E-value=0.79 Score=38.45 Aligned_cols=35 Identities=20% Similarity=0.063 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026949 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA 46 (230)
Q Consensus 12 ~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~ 46 (230)
.--+..+.+|+.+|.+|+..|+.+++.....++.+
T Consensus 108 ~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~ 142 (204)
T PRK09174 108 AAYEQELAQARAKAHSIAQAAREAAKAKAEAERAA 142 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666444444333
No 64
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=95.28 E-value=0.63 Score=34.57 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026949 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (230)
Q Consensus 20 eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~ 52 (230)
+|+..|.+|+.+|+.+.. .++.+++.++.
T Consensus 11 ~AE~eA~~iV~~Ar~~r~----~~lk~Ak~eA~ 39 (105)
T PF03179_consen 11 EAEKEAQEIVEEARKERE----QRLKQAKEEAE 39 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 455555555555555433 44444444433
No 65
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=95.12 E-value=1.5 Score=36.71 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 42 QLVEAEKKKIRQEYERKEKQVEIR 65 (230)
Q Consensus 42 ~i~~~~~~ki~~~~~~~~~~~~~~ 65 (230)
.|+..++......++....++..+
T Consensus 118 ~Ii~~A~~eAe~~~e~i~~~A~~e 141 (205)
T PRK06231 118 EIIDQANYEALQLKSELEKEANRQ 141 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555555555444444433
No 66
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=95.12 E-value=0.7 Score=37.44 Aligned_cols=41 Identities=27% Similarity=0.173 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK 67 (230)
Q Consensus 23 ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~ 67 (230)
.++++++.+|+.++. .|+++++......++....++.....
T Consensus 77 ~e~e~~L~~Ar~eA~----~Ii~~A~~eAe~~~~~ii~~A~~ea~ 117 (167)
T PRK08475 77 EDALKKLEEAKEKAE----LIVETAKKEAYILTQKIEKQTKDDIE 117 (167)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544 66666666665555555554444433
No 67
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=95.07 E-value=1.1 Score=35.71 Aligned_cols=46 Identities=11% Similarity=-0.010 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~ 55 (230)
+..-....+++|+.+|.+|+..|+.+++..+..++.+++..+....
T Consensus 75 ~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~ 120 (156)
T CHL00118 75 LTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLL 120 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777778888888877777655555555544444333
No 68
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=94.99 E-value=0.7 Score=35.96 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026949 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (230)
Q Consensus 12 ~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~ 52 (230)
.-.+..+++|+.+|.+|+..|..+++..+..++..+...+.
T Consensus 60 ~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~ 100 (140)
T PRK07353 60 AQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQ 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777776666666555544443
No 69
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=94.89 E-value=1.6 Score=35.00 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME 94 (230)
Q Consensus 42 ~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~ 94 (230)
.|+++++......++....++..+..+. ...++..+-..++.++.++..
T Consensus 78 ~ii~~A~~~a~~~~~~~l~~A~~ea~~~----~~~a~~~I~~ek~~a~~~L~~ 126 (164)
T PRK14473 78 KIVAQAQERARAQEAEIIAQARREAEKI----KEEARAQAEQERQRMLSELKS 126 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655555555444433322 223333444444444444433
No 70
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=94.84 E-value=1.2 Score=33.26 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS 97 (230)
Q Consensus 19 ~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a~ 97 (230)
.+|+.++++++..|+.++. .|+..++......++..+.++.....+.+. .+|..+-..++.++.++-.++.
T Consensus 9 k~aE~~~e~~L~~A~~Ea~----~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile----~Ak~eie~Ek~~a~~elk~eia 79 (103)
T PRK08404 9 VKAEKEAEERIEKAKEEAK----KIIRKAKEEAKKIEEEIIKKAEEEAQKLIE----KKKKEGEEEAKKILEEGEKEIE 79 (103)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999877 888888888888888777776665544433 3344444445555555444443
No 71
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=94.79 E-value=0.43 Score=38.64 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=25.2
Q ss_pred CcccceEEEecCCcEEEeccHHHHHHHHHHh
Q 026949 185 SCSGGVVVASRDGKIVCENTLDARLDVVFRK 215 (230)
Q Consensus 185 ~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~ 215 (230)
+.+||+++.. |...+|.|+.++|+.+...
T Consensus 143 ~ligGi~i~~--~~~~iD~Si~~~L~~l~~~ 171 (172)
T TIGR01145 143 DLIGGVIIRI--GDRVIDGSVRGQLKRLSRQ 171 (172)
T ss_pred HHhCceEEEE--CCEEEehhHHHHHHHHHhh
Confidence 7899999997 7788999999999877654
No 72
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=94.68 E-value=2 Score=35.18 Aligned_cols=24 Identities=17% Similarity=0.100 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 42 QLVEAEKKKIRQEYERKEKQVEIR 65 (230)
Q Consensus 42 ~i~~~~~~ki~~~~~~~~~~~~~~ 65 (230)
.++.+++.......+....++..+
T Consensus 94 ~ii~~A~~~ae~~~~~il~~A~~e 117 (184)
T CHL00019 94 EIRVNGYSEIEREKENLINQAKED 117 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444444433
No 73
>PRK05758 F0F1 ATP synthase subunit delta; Validated
Probab=94.65 E-value=0.43 Score=38.75 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=26.3
Q ss_pred CcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949 185 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (230)
Q Consensus 185 ~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~ 216 (230)
+.+||+++.. |...+|+|+.++|+.+...+
T Consensus 146 ~ligG~~i~~--~~~~~d~Si~~~L~~l~~~l 175 (177)
T PRK05758 146 SLIGGVIIKV--GDRVIDGSVRGKLERLKDAL 175 (177)
T ss_pred HHhCceEEEE--CCEEeehhHHHHHHHHHHHh
Confidence 7899999997 67889999999999887665
No 74
>PRK00106 hypothetical protein; Provisional
Probab=94.61 E-value=3.1 Score=40.02 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026949 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA 46 (230)
Q Consensus 13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~ 46 (230)
-...|..+|+.+|++|+.+|..+++..+..+..+
T Consensus 43 ~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lE 76 (535)
T PRK00106 43 EAVNLRGKAERDAEHIKKTAKRESKALKKELLLE 76 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777665444333333
No 75
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=94.56 E-value=2.1 Score=35.69 Aligned_cols=116 Identities=16% Similarity=0.246 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE 99 (230)
Q Consensus 20 eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a~~~ 99 (230)
.++...+.|...|+++++ .|..++..+.....++.... .+..+.......+...-..++.++..+..+++..
T Consensus 3 ~~e~~i~~I~~~a~eeak----~I~~eA~~eae~i~~ea~~~----~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~ 74 (194)
T COG1390 3 ELEKLIKKILREAEEEAE----EILEEAREEAEKIKEEAKRE----AEEAIEEILRKAEKEAERERQRIISSALLEARRK 74 (194)
T ss_pred cHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888776 77666554443333322222 2222222333344455566777777766666655
Q ss_pred HHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHH
Q 026949 100 VLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYA 154 (230)
Q Consensus 100 L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~ 154 (230)
+.. .++++|...+...-..|.. +.- +.+...+..++..+...|.
T Consensus 75 ~Le------~~ee~l~~~~~~~~e~L~~----i~~-~~~~~~l~~ll~~~~~~~~ 118 (194)
T COG1390 75 LLE------AKEEILESVFEAVEEKLRN----IAS-DPEYESLQELLIEALEKLL 118 (194)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHc----CcC-CcchHHHHHHHHHHHHhcC
Confidence 544 3566666655555555432 221 2244446666666555554
No 76
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=94.42 E-value=2.2 Score=34.44 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (230)
Q Consensus 42 ~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a 96 (230)
.|+..++......++....+++....+. ...++..+-..++..+.++...+
T Consensus 80 ~Ii~~A~~~a~~~~~~~~~~A~~ea~~~----~~~A~~~I~~e~~~a~~el~~e~ 130 (167)
T PRK14475 80 AMLAAAKADARRMEAEAKEKLEEQIKRR----AEMAERKIAQAEAQAAADVKAAA 130 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666655555555544444443333322 22334344444444444443333
No 77
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=94.42 E-value=3 Score=36.05 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ 61 (230)
Q Consensus 6 ~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~ 61 (230)
..++...+++....+|+...++|+.+|+++++ ++.......+..+..+...+
T Consensus 69 a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~----~~~~~a~~~ie~Ek~~a~~~ 120 (250)
T PRK14474 69 LEQQRASFMAQAQEAADEQRQHLLNEAREDVA----TARDEWLEQLEREKQEFFKA 120 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666666665 78877777777666555444
No 78
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=94.39 E-value=1 Score=37.02 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK 49 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ 49 (230)
+..-.+.++.+|+.++.+|+..|.++++..+..++.+...
T Consensus 84 ~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~ 123 (181)
T PRK13454 84 AEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADA 123 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777777777766555555444433
No 79
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=94.39 E-value=1.1 Score=35.30 Aligned_cols=44 Identities=30% Similarity=0.363 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026949 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE 56 (230)
Q Consensus 13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~ 56 (230)
-.+.++.+|+.+|..+...|..+|..+..++++++...+.....
T Consensus 63 e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~ 106 (141)
T PRK08476 63 EIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYE 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555444444333
No 80
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=94.14 E-value=2.6 Score=34.19 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026949 42 QLVEAEKKKIRQEYERKEKQVEI 64 (230)
Q Consensus 42 ~i~~~~~~ki~~~~~~~~~~~~~ 64 (230)
.|+.+++.......+....++..
T Consensus 86 ~ii~~A~~ea~~~~~~~~~~A~~ 108 (173)
T PRK13460 86 AIVAEAKSDALKLKNKLLEETNN 108 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56555555555554444444433
No 81
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=94.14 E-value=3.7 Score=35.93 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=23.2
Q ss_pred ccceEEEec----CCcEEEec---cHHHHHHHHHHhcHHHHHHH
Q 026949 187 SGGVVVASR----DGKIVCEN---TLDARLDVVFRKKLPEIRKQ 223 (230)
Q Consensus 187 ~GGvvl~s~----dg~i~vdn---Tle~rl~~~~~~~~~~I~~~ 223 (230)
.+|+-|... .|+.+|.. .+|.+++.-++.+...+...
T Consensus 234 ~~~i~I~~D~~l~~GgcvIet~~G~IDasi~tqLe~l~~~L~e~ 277 (281)
T PRK06669 234 EEHLKIYEDDAISKGGCVIETDFGNIDARIDTQLKQLKEKLLEN 277 (281)
T ss_pred CCCeEEEECCCCCCCCeEEEcCCCeeeccHHHHHHHHHHHHHhh
Confidence 466776654 37777754 56777776666666555443
No 82
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=94.10 E-value=2.4 Score=33.76 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (230)
Q Consensus 42 ~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a 96 (230)
.|+++++.......+....++..+..+.++ .++..+-..+..++.++..++
T Consensus 75 ~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~----~a~~~i~~e~~~a~~~l~~ei 125 (159)
T PRK13461 75 KIVEEYKSKAENVYEEIVKEAHEEADLIIE----RAKLEAQREKEKAEYEIKNQA 125 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555555554444333332 333344444444444443333
No 83
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=94.07 E-value=2.7 Score=34.11 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026949 42 QLVEAEKKKIRQEYERKEKQVEI 64 (230)
Q Consensus 42 ~i~~~~~~ki~~~~~~~~~~~~~ 64 (230)
.++.+++.......+....+++.
T Consensus 89 ~ii~~a~~~a~~~~~~~~~~A~~ 111 (174)
T PRK07352 89 RIRADAKARAEAIRAEIEKQAIE 111 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666655555554444444333
No 84
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=93.98 E-value=2.8 Score=34.02 Aligned_cols=23 Identities=4% Similarity=0.098 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026949 42 QLVEAEKKKIRQEYERKEKQVEI 64 (230)
Q Consensus 42 ~i~~~~~~ki~~~~~~~~~~~~~ 64 (230)
.|+.+++.......+....++..
T Consensus 88 ~ii~~A~~~a~~~~~~~~~~A~~ 110 (175)
T PRK14472 88 KIIREGKEYAEKLRAEITEKAHT 110 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444444444333
No 85
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=93.93 E-value=2.9 Score=33.97 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 41 LQLVEAEKKKIRQEYERKEKQVEIRK 66 (230)
Q Consensus 41 ~~i~~~~~~ki~~~~~~~~~~~~~~k 66 (230)
..|+++++.......+....++..+.
T Consensus 87 ~~ii~~a~~~a~~~~~~~~~~A~~ea 112 (173)
T PRK13453 87 QKILEDAKVQARQQQEQIIHEANVRA 112 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777776666666655555544433
No 86
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=93.70 E-value=0.83 Score=34.85 Aligned_cols=39 Identities=31% Similarity=0.256 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026949 13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKI 51 (230)
Q Consensus 13 ~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki 51 (230)
-....+.+|+.++.+|+..|..+++..+..++.+....+
T Consensus 55 e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~ 93 (132)
T PF00430_consen 55 EYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEA 93 (132)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666644444444444333
No 87
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=93.55 E-value=1 Score=36.92 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=26.4
Q ss_pred CcccceEEEecCCcEEEeccHHHHHHHHHHhcH
Q 026949 185 SCSGGVVVASRDGKIVCENTLDARLDVVFRKKL 217 (230)
Q Consensus 185 ~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~ 217 (230)
+.+||+++.. |...+|+|+.++|+.+...+.
T Consensus 150 ~ligGi~i~~--g~~~~D~Si~~~L~~l~~~l~ 180 (184)
T CHL00119 150 SLIGGFLIKI--GSKVIDTSIKGQLKQLASHLD 180 (184)
T ss_pred HHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence 7899999997 778899999999987766553
No 88
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=93.53 E-value=0.87 Score=37.11 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=23.5
Q ss_pred ccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHH
Q 026949 187 SGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRK 222 (230)
Q Consensus 187 ~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~ 222 (230)
+|||++.. |..++|.| ..|+.+...+..-|.+
T Consensus 143 IGG~ii~i--gd~v~D~s--~~l~~~~~~~~~~~~~ 174 (176)
T PRK08474 143 YDGIKVEV--DDLGVEVS--FSKDRLKNQLIEYILK 174 (176)
T ss_pred CCCEEEEE--CCEEEEee--eeHHHHHHHHHHHHHh
Confidence 89999997 88889995 4566666666554443
No 89
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=93.47 E-value=2.3 Score=31.46 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026949 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (230)
Q Consensus 9 ~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~ 57 (230)
+.++....|..+|+.....++.+|+.+|+ ..+...+.....+|..
T Consensus 11 ~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~----~ei~~~r~~~e~~~~~ 55 (105)
T PF03179_consen 11 EAEKEAQEIVEEARKEREQRLKQAKEEAE----KEIEEFRAEAEEEFKE 55 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999998 4444444444555543
No 90
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=93.40 E-value=4.6 Score=34.66 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ 61 (230)
Q Consensus 6 ~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~ 61 (230)
..++...|++.-..+|+...++|+.+|+.+++ ++...+...++.+..+...+
T Consensus 69 a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~----~~~~~a~~~ie~E~~~a~~~ 120 (246)
T TIGR03321 69 LDQQREVLLTKAKEEAQAERQRLLDEAREEAD----EIREKWQEALRREQAALSDE 120 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666677777777766 77777777777665554433
No 91
>PRK13429 F0F1 ATP synthase subunit delta; Provisional
Probab=92.87 E-value=2.4 Score=34.40 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=26.2
Q ss_pred CcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949 185 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (230)
Q Consensus 185 ~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~ 216 (230)
+.+||+++.. |...+|+|+.++|+.+...+
T Consensus 148 sligG~~i~~--~~~~iD~Si~~~L~~l~~~l 177 (181)
T PRK13429 148 SLIGGVVVKI--GDKVLDASVRTQLRRLKETL 177 (181)
T ss_pred hhhCceEEEE--CCEEEehhHHHHHHHHHHHH
Confidence 7899999997 66889999999999887665
No 92
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=92.62 E-value=5.2 Score=33.15 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026949 21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQE 54 (230)
Q Consensus 21 A~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~ 54 (230)
+...|.+|+..|+.+|+ +|+..+..+.+.-
T Consensus 28 ~~~~a~~IL~~A~~qA~----~Il~~Ae~eAe~l 57 (191)
T PF06188_consen 28 AQQQAREILEDARQQAE----QILQQAEEEAEAL 57 (191)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 56778888888888887 7887776655433
No 93
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.39 E-value=9.3 Score=36.57 Aligned_cols=31 Identities=26% Similarity=0.117 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 026949 14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLV 44 (230)
Q Consensus 14 ~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~ 44 (230)
...+..+|+.+|+.|+.+|..+++.......
T Consensus 23 a~~~l~~Ae~eAe~i~keA~~eAke~~ke~~ 53 (514)
T TIGR03319 23 AEKKLGSAEELAKRIIEEAKKEAETLKKEAL 53 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666654443333
No 94
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=92.38 E-value=1.8 Score=34.78 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 27 EISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEV 100 (230)
Q Consensus 27 eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a~~~L 100 (230)
+.+.+|+.++. .|+.+++.......+....+++....+ ....++..+-..|+..+.++-.++-+--
T Consensus 63 ~~L~~Ar~EA~----~Ii~~A~~~a~~~~~ea~~eA~~ea~r----~~~~A~~~Ie~Ek~~Al~elr~eva~La 128 (154)
T PRK06568 63 AQIKKLETLRS----QMIEESNEVTKKIIQEKTKEIEEFLEH----KKSDAIQLIQNQKSTASKELQDEFCDEV 128 (154)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555444 777777766655555554444433322 2333444555556665555555554433
No 95
>PRK12704 phosphodiesterase; Provisional
Probab=92.35 E-value=9.6 Score=36.55 Aligned_cols=24 Identities=33% Similarity=0.272 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 026949 15 RFIRQEAEEKANEISVSAEEEFNI 38 (230)
Q Consensus 15 ~~I~~eA~ekA~eI~~~A~~ea~~ 38 (230)
..+..+|+.+|++|+.+|..+++.
T Consensus 30 ~~~l~~Ae~eAe~I~keA~~eAke 53 (520)
T PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEA 53 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666555543
No 96
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=92.15 E-value=7.2 Score=33.67 Aligned_cols=50 Identities=6% Similarity=-0.007 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHh-----hccChhHHHHHHHHHHHHHHHhcCC-CcEEEEecc
Q 026949 86 DDLVSNMMEAASKEVLN-----VSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRK 136 (230)
Q Consensus 86 ~~~i~~v~~~a~~~L~~-----~~~~~~~Y~~~L~~Li~ea~~~l~~-~e~~v~~~~ 136 (230)
.+.+..++..+...+.. +.-+| .+.+++..........++. ..+.|+..|
T Consensus 158 ~e~i~~lv~~al~~l~~~~~i~I~v~p-~d~~~v~~~~~~l~~~~~~~~~i~i~~D~ 213 (255)
T TIGR03825 158 KNAFQALVRQVLSEVREFDEVSIYVHP-HWYERVAAQKDELQSILPACEHLAVYPDE 213 (255)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEECH-HHHHHHHHhHHHHHhhcCCCCceEEEeCC
Confidence 44666777777776654 22257 5555555555544444443 345555444
No 97
>PRK12704 phosphodiesterase; Provisional
Probab=92.12 E-value=12 Score=36.00 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 026949 80 KVLQAQDDLVSNMMEAASKEVLNVS 104 (230)
Q Consensus 80 ~~l~ar~~~i~~v~~~a~~~L~~~~ 104 (230)
+-|..+..-++++..+....|.+.+
T Consensus 124 ~eLe~~~~~~~~~~~~~~~~l~~~a 148 (520)
T PRK12704 124 QELEKKEEELEELIEEQLQELERIS 148 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555655665665543
No 98
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=91.90 E-value=6 Score=32.31 Aligned_cols=50 Identities=18% Similarity=0.263 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (230)
Q Consensus 42 ~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~ 95 (230)
.|+++++.......+....++... .+.....++..+-..++..+.++...
T Consensus 97 ~Ii~~A~~~a~~~~e~~~~~a~~e----a~~~~~~A~~~I~~ek~~a~~~l~~~ 146 (184)
T PRK13455 97 RIVAAAKDEAQAAAEQAKADLEAS----IARRLAAAEDQIASAEAAAVKAVRDR 146 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544444444333333322 12233344444555555554444333
No 99
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=91.80 E-value=5.3 Score=31.48 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 42 QLVEAEKKKIRQEYERKEKQVEIR 65 (230)
Q Consensus 42 ~i~~~~~~ki~~~~~~~~~~~~~~ 65 (230)
.|++++.......++....+++..
T Consensus 74 ~i~~~a~~ea~~~~~~~~~~a~~e 97 (156)
T PRK05759 74 EIIEQAKKRAAQIIEEAKAEAEAE 97 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666655555555554444433
No 100
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=91.38 E-value=5.7 Score=31.00 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 24 KANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEY 70 (230)
Q Consensus 24 kA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~ 70 (230)
+++..+.+|+.++. .|+++++.......+....++.....+.+
T Consensus 51 e~~~~l~~A~~ea~----~i~~~a~~~a~~~~~~~~~~a~~e~~~~~ 93 (147)
T TIGR01144 51 KAQVILKEAKDEAQ----EIIENANKRGSEILEEAKAEAREEREKIK 93 (147)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555544 77777777777666666555554443333
No 101
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=90.72 E-value=7.4 Score=31.11 Aligned_cols=51 Identities=0% Similarity=0.161 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (230)
Q Consensus 42 ~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a 96 (230)
.++..++......++....+++....+ .+..++..+-..++.++..+-..+
T Consensus 78 ~ii~~A~~~a~~~~~~~~~~A~~ea~~----~~~~a~~~i~~ek~~a~~~l~~~i 128 (164)
T PRK14471 78 AILKEAREIKEKMIADAKEEAQVEGDK----MIEQAKASIESEKNAAMAEIKNQV 128 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665555555444444443333322 223333344444444444443333
No 102
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=90.62 E-value=7 Score=30.66 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026949 21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK 58 (230)
Q Consensus 21 A~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~ 58 (230)
+..+.++++..|+.++. .++++...+...+.++.
T Consensus 60 ~~~e~e~~l~~Ar~eA~----~~~~~a~~~A~~ea~~~ 93 (141)
T PRK08476 60 IEHEIETILKNAREEAN----KIRQKAIAKAKEEAEKK 93 (141)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34445555555555555 34444444444444433
No 103
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=89.86 E-value=7.7 Score=29.99 Aligned_cols=63 Identities=6% Similarity=0.097 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA 95 (230)
Q Consensus 25 A~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~ 95 (230)
+++.+..|+.++. .|+++++.......+....++..+..+. ...++..+...++....++...
T Consensus 62 ~e~~L~~a~~ea~----~i~~~a~~~a~~~~~~~~~~a~~ea~~~----~~~a~~~i~~e~~~a~~~l~~~ 124 (140)
T PRK07353 62 YEQQLASARKQAQ----AVIAEAEAEADKLAAEALAEAQAEAQAS----KEKARREIEQQKQAALAQLEQQ 124 (140)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443 6777777666666665555544443332 2333334444444444443333
No 104
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=89.57 E-value=5.5 Score=30.20 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 23 EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRK 66 (230)
Q Consensus 23 ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k 66 (230)
.++++.+..|+.++. .++..++......++....+++..-
T Consensus 54 ~e~~~~l~~a~~ea~----~i~~~a~~~a~~~~~~~~~ea~~~~ 93 (132)
T PF00430_consen 54 AEYEEKLAEAREEAQ----EIIEEAKEEAEKEKEEILAEAEKEA 93 (132)
T ss_dssp HHHHHHHHHHHHHHC----HHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666655 7777777777766666655554443
No 105
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=89.47 E-value=12 Score=31.45 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026949 42 QLVEAEKKKIRQEYERKEKQ 61 (230)
Q Consensus 42 ~i~~~~~~ki~~~~~~~~~~ 61 (230)
.|+...+.......+....+
T Consensus 123 ~Ii~~Ar~ea~~~~e~~~~~ 142 (204)
T PRK09174 123 SIAQAAREAAKAKAEAERAA 142 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555544444444433333
No 106
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=88.18 E-value=12 Score=29.83 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEI 64 (230)
Q Consensus 25 A~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~ 64 (230)
+++.+.+|+.++. .+++.++.......+....+++.
T Consensus 79 ~e~~L~~A~~ea~----~ii~~A~~~a~~~~~~~~~~A~~ 114 (156)
T CHL00118 79 YEQELSKARKEAQ----LEITQSQKEAKEIVENELKQAQK 114 (156)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443 56666666555555544444433
No 107
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=88.03 E-value=14 Score=30.69 Aligned_cols=29 Identities=31% Similarity=0.241 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026949 15 RFIRQEAEEKANEISVSAEEEFNIEKLQL 43 (230)
Q Consensus 15 ~~I~~eA~ekA~eI~~~A~~ea~~ek~~i 43 (230)
..-+..|+.+|..|+..|+.+++..+...
T Consensus 26 ~~~~~~A~~~A~~i~~~A~~eAe~~~ke~ 54 (201)
T PF12072_consen 26 RKKLEQAEKEAEQILEEAEREAEAIKKEA 54 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666666433333
No 108
>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.
Probab=87.47 E-value=0.052 Score=43.86 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=11.9
Q ss_pred CCCCcccceEEEecCCcEEEeccHHHHHHHHHHh
Q 026949 182 HGPSCSGGVVVASRDGKIVCENTLDARLDVVFRK 215 (230)
Q Consensus 182 ~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~ 215 (230)
.+++++|||++.. |..++|.|+.++|+.+...
T Consensus 140 vD~sLigG~~i~~--~~~~iD~Sv~~~L~~l~~~ 171 (172)
T PF00213_consen 140 VDPSLIGGFIIEV--GDKVIDASVKSRLEQLKKE 171 (172)
T ss_dssp -------------------TTTTTTTTTTTT-TT
T ss_pred EccccCcEEEEEE--CCEEEehhHHHHHHHHHhc
Confidence 3458999999997 7888999999999876654
No 109
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=86.41 E-value=32 Score=33.00 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949 12 QMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 12 ~~~~~I~~eA~ekA~eI~~~A~~ea~ 37 (230)
+-...|..+|..+|++...++..+++
T Consensus 32 ~eAe~i~keA~~eAke~~ke~~~Eae 57 (514)
T TIGR03319 32 ELAKRIIEEAKKEAETLKKEALLEAK 57 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555544444444443
No 110
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=85.44 E-value=17 Score=29.14 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhc
Q 026949 109 SYKKLLKGLIVQSLLRL 125 (230)
Q Consensus 109 ~Y~~~L~~Li~ea~~~l 125 (230)
.|.+-|..|...-...+
T Consensus 125 ~~~~~~i~~~~~i~~k~ 141 (155)
T PRK06569 125 NKSEAIIKLAVNIIEKI 141 (155)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 46666666666655444
No 111
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=84.88 E-value=18 Score=28.93 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 42 QLVEAEKKKIRQEYERKEKQVEIRK 66 (230)
Q Consensus 42 ~i~~~~~~ki~~~~~~~~~~~~~~k 66 (230)
.|++.++.......+....+++...
T Consensus 76 ~Ii~~A~~~a~~~~~e~~~~a~~e~ 100 (161)
T COG0711 76 EIIEQAKKEAEQIAEEIKAEAEEEL 100 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777666666655555544444433
No 112
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=82.89 E-value=24 Score=28.78 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 25 ANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62 (230)
Q Consensus 25 A~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~ 62 (230)
.++++.+|+.|+. .++.+.+.......+....++
T Consensus 88 ye~~L~~Ar~EA~----~ii~~A~~ea~~~~~~~~~~A 121 (181)
T PRK13454 88 YNKALADARAEAQ----RIVAETRAEIQAELDVAIAKA 121 (181)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 566666555555554444443
No 113
>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]
Probab=81.18 E-value=3.6 Score=34.33 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=25.0
Q ss_pred CCcccceEEEecCCcEEEeccHHHHHHHHHH
Q 026949 184 PSCSGGVVVASRDGKIVCENTLDARLDVVFR 214 (230)
Q Consensus 184 ~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~ 214 (230)
++++||++|+. |.-.||-|+.+|+..+-.
T Consensus 176 PSI~GGliVei--GdK~vDmSI~tr~q~l~~ 204 (210)
T KOG1662|consen 176 PSIIGGLIVEI--GDKYVDMSIKTRLQKLNK 204 (210)
T ss_pred hhhhcceEEEE--cCeeEeeeHHHHHHHHHH
Confidence 48999999987 777899999999986654
No 114
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=80.50 E-value=23 Score=26.92 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026949 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE 56 (230)
Q Consensus 20 eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~ 56 (230)
.|+.+|.+|+.+|+.. +.+-+.+++..+..+++
T Consensus 13 ~AE~eA~~IV~~AR~~----r~~RLKqAK~EA~~EI~ 45 (113)
T TIGR01147 13 QAEKRAAEKVSEARKR----KTKRLKQAKEEAQKEVE 45 (113)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 3888999999888864 33444555555554443
No 115
>PRK00106 hypothetical protein; Provisional
Probab=78.18 E-value=68 Score=30.99 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026949 80 KVLQAQDDLVSNMMEAASKEVLNVSR 105 (230)
Q Consensus 80 ~~l~ar~~~i~~v~~~a~~~L~~~~~ 105 (230)
.-+..+..-++.+.......|.++.+
T Consensus 139 eeLee~~~~~~~~~~~~~~~Le~~a~ 164 (535)
T PRK00106 139 KHIDEREEQVEKLEEQKKAELERVAA 164 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44445555555666666555655433
No 116
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=74.76 E-value=72 Score=29.81 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026949 20 EAEEKANEISVSAEEEFN 37 (230)
Q Consensus 20 eA~ekA~eI~~~A~~ea~ 37 (230)
||+..+.+|+.+|+.++.
T Consensus 267 eAeayan~iip~A~gea~ 284 (419)
T PRK10930 267 EAEAYTNEVQPRANGQAQ 284 (419)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555544
No 117
>PRK10780 periplasmic chaperone; Provisional
Probab=73.11 E-value=46 Score=26.59 Aligned_cols=53 Identities=11% Similarity=0.247 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHH
Q 026949 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLE 147 (230)
Q Consensus 81 ~l~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~ 147 (230)
+...++++...++..+.+-+..+.... .|.=+| +...++|++|. .++...++.
T Consensus 110 ~~~~~~e~~~~i~~ki~~ai~~vak~~-gy~~Vl------------d~~~v~Y~~~~-~DIT~~Vik 162 (165)
T PRK10780 110 RRRRSNEERNKILTRIQTAVKSVANKQ-GYDLVV------------DANAVAYNSSD-KDITADVLK 162 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeEEE------------eCCceeeeCCC-CCchHHHHH
Confidence 334456666777777777776666553 455333 12236887774 666666554
No 118
>PRK12705 hypothetical protein; Provisional
Probab=72.62 E-value=93 Score=29.88 Aligned_cols=28 Identities=29% Similarity=0.178 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~ 37 (230)
+.+-...|..+|+.+|+.+..+|.-++.
T Consensus 31 ~~~~a~~~~~~a~~~a~~~~~~~~~~~~ 58 (508)
T PRK12705 31 LAKEAERILQEAQKEAEEKLEAALLEAK 58 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456667777777666666555554
No 119
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=71.62 E-value=57 Score=27.03 Aligned_cols=28 Identities=32% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~ 37 (230)
...-...|+.+|+.+|+.+..+|.-++.
T Consensus 32 A~~~A~~i~~~A~~eAe~~~ke~~~eak 59 (201)
T PF12072_consen 32 AEKEAEQILEEAEREAEAIKKEAELEAK 59 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777776666655
No 120
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=66.49 E-value=61 Score=25.40 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 026949 21 AEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ 53 (230)
Q Consensus 21 A~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~ 53 (230)
+-.+|.+|+.+|+++++ +|+..+..+.+.
T Consensus 11 ~~~~A~~il~~A~~~a~----~i~~~A~~~~e~ 39 (166)
T TIGR02499 11 ALAQAQAILAAARQRAE----AILADAEEEAEA 39 (166)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44589999999999988 888877665543
No 121
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=63.77 E-value=73 Score=25.29 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026949 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (230)
Q Consensus 4 ~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~ 55 (230)
+||-==+..|=+..+++..+...++..+..++.+.-..+..+..+.+.++-.
T Consensus 23 DDPILil~TiNe~ll~~~~~aq~~~l~~fk~elE~~~~~w~~dak~kAEkiL 74 (144)
T PF11657_consen 23 DDPILILQTINERLLEDSAKAQQEQLDQFKEELEEIASRWGEDAKEKAEKIL 74 (144)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666666666666666666666444455555555444333
No 122
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=61.83 E-value=1e+02 Score=26.29 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 4 ~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~ 37 (230)
.++++.++.++. |++.+...+.+|+.+++
T Consensus 149 ~~v~~a~~~~~~-----a~q~~~~~~~~ae~~~~ 177 (261)
T TIGR01933 149 EEVKEAFDDVII-----AREDEERYINEAEAYAN 177 (261)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 445544554443 34444555555555443
No 123
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=61.17 E-value=68 Score=24.10 Aligned_cols=16 Identities=31% Similarity=0.354 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 026949 20 EAEEKANEISVSAEEE 35 (230)
Q Consensus 20 eA~ekA~eI~~~A~~e 35 (230)
.|+.+|.+|+++|+.-
T Consensus 13 qAEK~A~e~V~~ARk~ 28 (108)
T KOG1772|consen 13 QAEKRAAEKVEEARKR 28 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788888888888774
No 124
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=60.85 E-value=78 Score=24.65 Aligned_cols=54 Identities=11% Similarity=0.239 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHH
Q 026949 80 KVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLE 147 (230)
Q Consensus 80 ~~l~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~ 147 (230)
.+-..++.++..+...+..-+..+... .+...+-+...++|..| ..++...++.
T Consensus 102 ~l~~~~~~~~~~i~~~i~~~v~~~a~~-------------~g~~~Vl~~~~vly~~~-~~DIT~~Vi~ 155 (158)
T PF03938_consen 102 QLQQEEQELLQPIQKKINKAVEEYAKE-------------NGYDLVLDKNAVLYADP-AYDITDEVIK 155 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------TT-SEEEEGGGEEEE-T-TSE-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------cCCeEEEeCCceEeeCC-CCChHHHHHH
Confidence 444455556666666555555444432 12222222334677776 5566666655
No 125
>PRK06937 type III secretion system protein; Reviewed
Probab=57.61 E-value=1.1e+02 Score=25.31 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026949 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKI 51 (230)
Q Consensus 20 eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki 51 (230)
.+--.|++|++.|+++++ .|+..+.+..
T Consensus 27 ~~~~~A~~il~~A~~~A~----~i~~~A~~~~ 54 (204)
T PRK06937 27 QSLLSAEELVEAARQRAE----EIEAEAQEVY 54 (204)
T ss_pred HHHhhHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 345678899999999988 7877765433
No 126
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=54.21 E-value=1.6e+02 Score=26.19 Aligned_cols=19 Identities=53% Similarity=0.489 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026949 17 IRQEAEEKANEISVSAEEE 35 (230)
Q Consensus 17 I~~eA~ekA~eI~~~A~~e 35 (230)
.+.+|+..|..|..+|+.+
T Consensus 228 ~r~ege~~a~~i~a~A~~e 246 (317)
T TIGR01932 228 HRSQGEEKAEEILGKAEYE 246 (317)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 127
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=53.65 E-value=94 Score=23.40 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 3 ~~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~ 37 (230)
|.++.+-++.+-+.+..+|+.+|..|+.+=..|..
T Consensus 13 d~~~ee~~~~~q~~~e~eA~kkA~K~lkKN~rEIk 47 (109)
T PHA02571 13 DEEVEELLSELQARNEAEAEKKAAKILKKNRREIK 47 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44566667777778888888888888877766644
No 128
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=52.10 E-value=36 Score=23.05 Aligned_cols=13 Identities=46% Similarity=0.851 Sum_probs=10.6
Q ss_pred CcccceEEEecCCcE
Q 026949 185 SCSGGVVVASRDGKI 199 (230)
Q Consensus 185 ~~~GGvvl~s~dg~i 199 (230)
...||+|++ ||+.
T Consensus 35 ~~~GGvV~e--DgR~ 47 (62)
T PF15513_consen 35 RLTGGVVME--DGRH 47 (62)
T ss_pred eEeccEEEe--CCCE
Confidence 678999999 5764
No 129
>PRK06328 type III secretion system protein; Validated
Probab=44.76 E-value=1.9e+02 Score=24.40 Aligned_cols=114 Identities=10% Similarity=0.173 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEE-FNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKV 81 (230)
Q Consensus 3 ~~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~e-a~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~ 81 (230)
..++-.....-.+.|..+|++++++|..+|.++ |+.-..... +....+...+.....+. + .....-.+..+| ++
T Consensus 31 A~~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~~~~~-~~~~~l~~~~~~~~~~~--e-~~lv~Lal~ia~-kV 105 (223)
T PRK06328 31 AQELLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGSKAWS-KQLAFLEEETQKLREQV--K-EALVPLAIASVK-KI 105 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHH-HH
Confidence 345556677778899999999999999998776 332221110 11111222211111111 1 111222344455 33
Q ss_pred HH----HHHHHHHHHHHHHHHHHHh-----hccChhHHHHHHHHHHHHHH
Q 026949 82 LQ----AQDDLVSNMMEAASKEVLN-----VSRDHNSYKKLLKGLIVQSL 122 (230)
Q Consensus 82 l~----ar~~~i~~v~~~a~~~L~~-----~~~~~~~Y~~~L~~Li~ea~ 122 (230)
+. ...+.|-.++..+...+.. +.-+| .+.+++.....+-.
T Consensus 106 i~~el~~d~e~il~lV~~aL~~l~~~~~v~I~VnP-~D~~~v~~~~~~l~ 154 (223)
T PRK06328 106 IGKELELHPETIVSIIANSLKELTQHKRIIIHVNP-KDLAIVEKSRPELK 154 (223)
T ss_pred HHHHHhhCHHHHHHHHHHHHHhcccCCceEEEECH-HHHHHHHHHHHHHH
Confidence 43 3346666777777777654 23367 55556665544433
No 130
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=43.70 E-value=7.7 Score=29.46 Aligned_cols=25 Identities=40% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949 13 MVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 13 ~~~~I~~eA~ekA~eI~~~A~~ea~ 37 (230)
....+...|+.+|+.|+..|+.+++
T Consensus 75 ~a~~~~~~A~~eA~~i~~~A~~~a~ 99 (131)
T PF05103_consen 75 TADEIKAEAEEEAEEIIEEAQKEAE 99 (131)
T ss_dssp -------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555544
No 131
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=43.67 E-value=91 Score=20.35 Aligned_cols=39 Identities=18% Similarity=0.479 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 026949 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKI 51 (230)
Q Consensus 9 ~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki 51 (230)
-+++.++-+++.-+++-.||...-..||+ .|+......+
T Consensus 8 ~~d~yI~~Lk~kLd~Kk~Eil~~ln~EY~----kiLk~r~~~l 46 (56)
T PF08112_consen 8 TIDKYISILKSKLDEKKSEILSNLNMEYE----KILKQRRKEL 46 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 36778888888888888888888888876 6665544333
No 132
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=42.29 E-value=3e+02 Score=25.96 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=19.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026949 31 SAEEEFNIEKLQLVEAEKKKIRQEYERKE 59 (230)
Q Consensus 31 ~A~~ea~~ek~~i~~~~~~ki~~~~~~~~ 59 (230)
+|+.||+ -..+|+....++++++|..+.
T Consensus 375 EARrEAE-~LqrI~~aK~~k~EEEYas~~ 402 (446)
T PF07227_consen 375 EARREAE-GLQRIALAKSEKIEEEYASRY 402 (446)
T ss_pred HHHHHHH-HHHHHHHHhHHHHHHHHHHHH
Confidence 3666666 345788888888999987663
No 133
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=40.55 E-value=2.3e+02 Score=24.09 Aligned_cols=9 Identities=11% Similarity=0.350 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 026949 4 ADVSKQIQQ 12 (230)
Q Consensus 4 ~~~~~~i~~ 12 (230)
.++++.++.
T Consensus 176 ~~i~~a~~~ 184 (266)
T cd03404 176 EEVQDAFDD 184 (266)
T ss_pred HHHHHHHHH
Confidence 334444443
No 134
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=40.46 E-value=2.3e+02 Score=24.05 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026949 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY 55 (230)
Q Consensus 9 ~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~ 55 (230)
..-.-...|++.|...-..++.+|+.+++ +++.....+++.++
T Consensus 49 ~A~rkA~~I~q~A~~~~~~ll~qaqqqad----~L~~~~~~~~E~~~ 91 (224)
T PRK15354 49 SAYRKAEKIIRDAYRYQREQKVEQQQELA----CLRKNTLEKMEVEW 91 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34455667888888888888888888877 77777666666655
No 135
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=39.62 E-value=2.7e+02 Score=25.63 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026949 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK 50 (230)
Q Consensus 9 ~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~k 50 (230)
+.+-+...++.+|..+++++..+--..|+.+++......+..
T Consensus 81 ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~K~k~ 122 (424)
T KOG2880|consen 81 EKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHSKKKN 122 (424)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 345567777889999999999888888887777776665444
No 136
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=37.80 E-value=1.8e+02 Score=21.93 Aligned_cols=28 Identities=18% Similarity=0.042 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026949 11 QQMVRFIRQEAEEKANEISVSAEEEFNI 38 (230)
Q Consensus 11 ~~~~~~I~~eA~ekA~eI~~~A~~ea~~ 38 (230)
++-...|.++|+..--.=+.+|.+||..
T Consensus 15 EK~A~e~V~~ARk~K~~RLKQAKeEA~~ 42 (108)
T KOG1772|consen 15 EKRAAEKVEEARKRKLRRLKQAKEEAEK 42 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788887777777788888773
No 137
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.18 E-value=4.8e+02 Score=26.79 Aligned_cols=29 Identities=10% Similarity=0.255 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 8 KQIQQMVRFIRQEAEEKANEISVSAEEEF 36 (230)
Q Consensus 8 ~~i~~~~~~I~~eA~ekA~eI~~~A~~ea 36 (230)
.+|++--..++.+-+.++++...+-++|.
T Consensus 327 aELerRRq~leeqqqreree~eqkEreE~ 355 (1118)
T KOG1029|consen 327 AELERRRQALEEQQQREREEVEQKEREEE 355 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554444443
No 138
>PRK12705 hypothetical protein; Provisional
Probab=33.72 E-value=4.4e+02 Score=25.36 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026949 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQL 43 (230)
Q Consensus 6 ~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i 43 (230)
.+++.+.+.....-+|++++..+..+++++++..+..+
T Consensus 42 a~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~ 79 (508)
T PRK12705 42 AQKEAEEKLEAALLEAKELLLRERNQQRQEARREREEL 79 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666777777777666665444333
No 139
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=32.30 E-value=2.1e+02 Score=21.21 Aligned_cols=38 Identities=3% Similarity=0.140 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 51 IRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS 90 (230)
Q Consensus 51 i~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~ 90 (230)
.+++-+++.++.+.++...++..-.++| +|+.+++++-
T Consensus 55 ~E~~~q~r~rES~~Er~K~~~s~~~~q~--Lm~rQN~mm~ 92 (121)
T PF10669_consen 55 KEEKRQKRNRESKRERQKFIWSMNKQQS--LMNRQNNMMK 92 (121)
T ss_pred HHHHHHHHhhhhHHHHHhHHhhhhHHHH--HHHHHhHHHH
Confidence 3333334444444445555555444444 3666666553
No 140
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.21 E-value=1.5e+02 Score=20.61 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 026949 2 NDADVSKQIQQMVRFIRQE-AEEKANEISVSA 32 (230)
Q Consensus 2 ~~~~~~~~i~~~~~~I~~e-A~ekA~eI~~~A 32 (230)
++.+.-+..+...++|+.. |.+.|+-|...+
T Consensus 43 ~ppe~~~~~EE~~~~lRe~~a~~eaK~~R~a~ 74 (77)
T KOG4702|consen 43 SPPEATKRKEEYENFLREQMAFEEAKKIRGAA 74 (77)
T ss_pred CChHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556667777788888877 777777776544
No 141
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.36 E-value=6.6e+02 Score=27.19 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=31.3
Q ss_pred hccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHH
Q 026949 103 VSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 151 (230)
Q Consensus 103 ~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~ 151 (230)
++.+| +--.-|..-|.+.+..|..=+.+++=...|..+++.+..++..
T Consensus 1506 lp~tp-eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~ 1553 (1758)
T KOG0994|consen 1506 LPLTP-EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAER 1553 (1758)
T ss_pred CCCCH-HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 45555 4444566667777777766555677677788888777765543
No 142
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=28.39 E-value=5e+02 Score=24.29 Aligned_cols=11 Identities=27% Similarity=0.072 Sum_probs=5.7
Q ss_pred HHHHHHHHHHh
Q 026949 27 EISVSAEEEFN 37 (230)
Q Consensus 27 eI~~~A~~ea~ 37 (230)
..+.+|+..++
T Consensus 263 ~~i~eAeayan 273 (419)
T PRK10930 263 QYIREAEAYTN 273 (419)
T ss_pred HHHHHHHHHHH
Confidence 34446666544
No 143
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=27.37 E-value=43 Score=24.88 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=11.3
Q ss_pred CCcccceEEEecCCcEEEecc
Q 026949 184 PSCSGGVVVASRDGKIVCENT 204 (230)
Q Consensus 184 ~~~~GGvvl~s~dg~i~vdnT 204 (230)
....||+.+.+ =+|.-|||
T Consensus 38 s~t~Gg~~i~a--yrI~~D~t 56 (100)
T PF06903_consen 38 SKTRGGLRIDA--YRITPDGT 56 (100)
T ss_pred cccCcccceee--EEEeCCCe
Confidence 46778877664 44444444
No 144
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=26.36 E-value=3.3e+02 Score=21.58 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~ 37 (230)
+..|=++.+++-++-=.+++..-++|.+
T Consensus 29 lqTiNerLlees~kAQq~mL~~FkeelE 56 (144)
T PRK13895 29 LQTINDRLMQDSAKAQQEMLDQFKEELE 56 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4444445555544444444444444444
No 145
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=26.16 E-value=4.9e+02 Score=23.48 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 026949 15 RFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 15 ~~I~~eA~ekA~eI~~~A~~ea~ 37 (230)
+...+|-+..|..+.++|+.+++
T Consensus 225 ~~~~Aere~~a~~~~aege~~a~ 247 (334)
T PRK11029 225 NRMRAEREAVARRHRSQGQEEAE 247 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555544
No 146
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=26.02 E-value=3.8e+02 Score=22.22 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSM 72 (230)
Q Consensus 4 ~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~ 72 (230)
..+..+-++....+..+++..|..|..+|+.++. .+..++.++......+.+.++.......++.
T Consensus 160 ~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~----~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~ 224 (242)
T cd03405 160 RRMRAERERIAAEFRAEGEEEAERIRADADRERT----VILAEAYREAQEIRGEGDAEAARIYAEAYGK 224 (242)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
No 147
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=24.41 E-value=2.8e+02 Score=23.12 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=26.8
Q ss_pred CcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949 185 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (230)
Q Consensus 185 ~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~ 216 (230)
.++|-+++...+-.|.++-+++.|..+.+.+.
T Consensus 128 r~~~~~v~~~a~~~ifl~a~~~~Ra~Rr~~~~ 159 (217)
T TIGR00017 128 RDIGTVVFPNAEVKIFLDASVEERAKRRYKQL 159 (217)
T ss_pred cCcceEEeCCCCEEEEEECCHHHHHHHHHHHH
Confidence 46788888877789999999999998887765
No 148
>PF14164 YqzH: YqzH-like protein
Probab=23.29 E-value=1.4e+02 Score=20.34 Aligned_cols=37 Identities=11% Similarity=0.198 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHH
Q 026949 111 KKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLE 147 (230)
Q Consensus 111 ~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~ 147 (230)
..|+.++|.+++.+.|.+.-..-+++.|.+.+...+.
T Consensus 3 ek~I~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~ 39 (64)
T PF14164_consen 3 EKLIEKMIINCLRQYGYDVECMPLSDEEWEELCKHIQ 39 (64)
T ss_pred HHHHHHHHHHHHHHhCCcccCCCCCHHHHHHHHHHHH
Confidence 4678888888888886653456667777766554433
No 149
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=22.63 E-value=68 Score=24.93 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHH
Q 026949 109 SYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY 153 (230)
Q Consensus 109 ~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~ 153 (230)
.+..+++-++.-++..++++-++-++.|.|..++..+=+++...|
T Consensus 4 ~w~~W~K~~~~G~~ii~~G~~l~~y~tPTeEeL~~r~sPELrkr~ 48 (128)
T PF07960_consen 4 NWRRWAKMLVAGAVIIGGGPALVKYTTPTEEELFKRYSPELRKRY 48 (128)
T ss_pred hHHHHHHHHHhcceeEeechHHheecCCCHHHHHHhcCHHHHHHH
Confidence 467778888888888888888999999999999988888776655
No 150
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=21.63 E-value=2e+02 Score=18.23 Aligned_cols=39 Identities=5% Similarity=0.202 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHh
Q 026949 85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLR 124 (230)
Q Consensus 85 r~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~ 124 (230)
+..+++.+..+--+.|.++++.| .+..---.+|..++..
T Consensus 3 ~~~yl~~~t~efgdDLd~lR~~~-dF~~~sl~~Li~aL~~ 41 (47)
T PF14615_consen 3 RNFYLQRLTDEFGDDLDELRKAP-DFTDKSLPLLIDALQQ 41 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCCchhHHHHHHHHHh
Confidence 56788889999999999999887 6666655666666554
No 151
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=21.40 E-value=2.5e+02 Score=18.45 Aligned_cols=39 Identities=10% Similarity=0.284 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcC
Q 026949 87 DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK 126 (230)
Q Consensus 87 ~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~ 126 (230)
..+..++....+.|..++.+. .|....+.+..+=+..+.
T Consensus 5 ~~L~~lY~~~L~~L~~~P~~a-~YR~~tE~it~~Rl~iv~ 43 (57)
T PF04716_consen 5 EALISLYNKTLKALKKIPEDA-AYRQYTEAITKHRLKIVE 43 (57)
T ss_pred HHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHH
Confidence 345678999999999999985 899999999998776653
Done!