Query 026949
Match_columns 230
No_of_seqs 127 out of 606
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 03:51:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4efa_E V-type proton ATPase su 100.0 2E-51 7E-56 349.5 30.3 221 1-230 8-228 (233)
2 3v6i_A V-type ATP synthase sub 100.0 1.2E-34 4.1E-39 238.5 26.9 182 12-226 2-187 (187)
3 2dm9_A V-type ATP synthase sub 100.0 2.6E-31 9E-36 218.6 11.5 191 10-226 4-198 (198)
4 3lg8_A A-type ATP synthase sub 99.9 1.9E-26 6.5E-31 173.1 -3.3 102 109-225 4-106 (106)
5 2kk7_A V-type ATP synthase sub 97.6 0.00028 9.7E-09 45.3 6.8 40 9-52 7-46 (52)
6 2dm9_A V-type ATP synthase sub 97.4 0.00036 1.2E-08 56.1 7.1 121 5-126 10-146 (198)
7 3v6i_A V-type ATP synthase sub 97.2 0.012 4.1E-07 47.2 14.4 114 6-120 7-136 (187)
8 1l2p_A ATP synthase B chain; a 95.6 0.19 6.6E-06 32.6 9.7 30 17-46 3-32 (61)
9 1l2p_A ATP synthase B chain; a 94.8 0.4 1.4E-05 31.0 9.4 49 10-58 7-55 (61)
10 2kk7_A V-type ATP synthase sub 94.2 0.13 4.4E-06 32.7 5.7 34 4-37 13-46 (52)
11 2k6i_A Uncharacterized protein 91.2 0.46 1.6E-05 30.5 5.1 27 20-50 23-49 (56)
12 4efa_E V-type proton ATPase su 87.5 10 0.00035 30.8 18.1 95 17-125 13-107 (233)
13 2k6i_A Uncharacterized protein 84.3 1.6 5.5E-05 28.0 4.3 28 10-37 24-51 (56)
14 2wss_S ATP synthase subunit O, 82.9 0.056 1.9E-06 43.4 -3.8 32 183-216 155-186 (190)
15 4efa_G V-type proton ATPase su 71.3 21 0.00073 26.2 7.8 34 20-57 17-50 (119)
16 3v6i_B V-type ATP synthase, su 66.1 33 0.0011 24.5 13.0 29 18-50 22-50 (105)
17 4efa_G V-type proton ATPase su 64.4 40 0.0014 24.7 9.4 33 11-43 19-51 (119)
18 3v6i_B V-type ATP synthase, su 56.6 51 0.0017 23.5 13.6 26 12-37 27-52 (105)
19 3fx7_A Putative uncharacterize 31.1 63 0.0022 22.7 4.1 35 85-119 46-80 (94)
20 3bpj_A Eukaryotic translation 30.4 85 0.0029 21.1 4.6 45 95-149 22-66 (80)
21 4e22_A Cytidylate kinase; P-lo 25.4 86 0.0029 25.2 4.7 29 187-215 145-183 (252)
22 2di4_A Zinc protease, cell div 23.8 1.8E+02 0.0061 23.7 6.3 33 5-37 146-178 (238)
23 1nwz_A PYP, photoactive yellow 20.3 80 0.0027 23.1 3.2 26 185-210 25-50 (125)
No 1
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=100.00 E-value=2e-51 Score=349.55 Aligned_cols=221 Identities=34% Similarity=0.542 Sum_probs=206.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK 80 (230)
Q Consensus 1 ~~~~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~ 80 (230)
|||++|+++|++|++||++||+++|++|..+|++||++++.+++++++.++...|++++++++..+++..|+..+++|++
T Consensus 8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~ 87 (233)
T 4efa_E 8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK 87 (233)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCC
Q 026949 81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH 160 (230)
Q Consensus 81 ~l~ar~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~ 160 (230)
+|.+|+++|+++|+.|+++|.+++.++..|+.+|.+||.+|+..+++++++|+|+|.|.++++.+++++...|+..+|+.
T Consensus 88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~ 167 (233)
T 4efa_E 88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRA 167 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999988778999999999999999999999999999999999999999999999888875
Q ss_pred CCeEEeccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcCCCCC
Q 026949 161 PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA 230 (230)
Q Consensus 161 ~~~v~vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~~~~~ 230 (230)
.....++...+|++ .+|.|||+|+|.||+|.|||||++||+.++++++|+|++.|||+||+
T Consensus 168 ~~~~~~~~~~~l~~---------~~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~~LFG~~~~ 228 (233)
T 4efa_E 168 PLEEIVISNDYLNK---------DLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKT 228 (233)
T ss_dssp CCCEEEECSSCCCT---------TTCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred CccccccccccCCc---------ccccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCcCCC
Confidence 44444444566654 37999999999999999999999999999999999999999999984
No 2
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=100.00 E-value=1.2e-34 Score=238.53 Aligned_cols=182 Identities=17% Similarity=0.234 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK----QVEIRKKIEYSMQLNASRIKVLQAQDD 87 (230)
Q Consensus 12 ~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~----~~~~~k~~~~S~~~~~~R~~~l~ar~~ 87 (230)
++...|.++|+++|++|+.+|+++++ .|+++++.++....+...+ ++...+++.+|+.....|+++|.+|++
T Consensus 2 ~~~~~l~~eA~~~a~~I~~eA~~~a~----~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e 77 (187)
T 3v6i_A 2 KLEAILSQEVEAEIQALLQEAEAKAE----AVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE 77 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999887 8888888877777655543 444556777899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEEec
Q 026949 88 LVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD 167 (230)
Q Consensus 88 ~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~vd 167 (230)
+++++|+.|+++|.+++.++ .|+++|.+||.+|+..+++++++| |+|.|.++++.++++ + | +++..+
T Consensus 78 li~~v~~~a~~~L~~~~~~~-~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~----~----~---~~~~~~ 144 (187)
T 3v6i_A 78 VLEEVRRRVREALEALPQKP-EWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE----R----G---VELQAE 144 (187)
T ss_dssp HHHHHHHHHHHHHHHGGGST-THHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH----H----T---CEEEEC
T ss_pred HHHHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh----c----C---eeeCCC
Confidence 99999999999999999985 799999999999999999988866 999999999988764 2 2 233221
Q ss_pred cccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcC
Q 026949 168 HHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 226 (230)
Q Consensus 168 ~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~ 226 (230)
.+|.|||+|+++||+|.|||||++||+.+|++++|+|++.|||
T Consensus 145 ----------------~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~~LFg 187 (187)
T 3v6i_A 145 ----------------PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQALWG 187 (187)
T ss_dssp ----------------TTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ----------------CcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHHHhcC
Confidence 3789999999999999999999999999999999999999997
No 3
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=99.97 E-value=2.6e-31 Score=218.65 Aligned_cols=191 Identities=24% Similarity=0.348 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE----RKEKQVEIRKKIEYSMQLNASRIKVLQAQ 85 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~----~~~~~~~~~k~~~~S~~~~~~R~~~l~ar 85 (230)
++++++.|+++|+.++++|+.+|+++++ .|+.+++.+...+.. ...++++..+++.+|...+..|..++.+|
T Consensus 4 le~l~~~il~~A~~~a~~il~eA~~~a~----~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~ 79 (198)
T 2dm9_A 4 AELIIQEINKEAERKIEYILNEARQQAE----KIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQ 79 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666655 555555444433332 22345566677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHHHHHHHHhhCCCCCeEE
Q 026949 86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEII 165 (230)
Q Consensus 86 ~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~~~~~~~~~g~~~~~v~ 165 (230)
+++++.+|..|...|.+++ + +.|+++|.+||.+++..++++.++|+|+|.|.++++.+++.+...|+ ++.++
T Consensus 80 ~ev~~~~~~~a~~~l~~l~-~-~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~------~~~l~ 151 (198)
T 2dm9_A 80 EEIISSVLEEVKRRLETMS-E-DEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIE 151 (198)
T ss_dssp -CHHHHHHHHHHHHHHHCC-H-HHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEE
T ss_pred HHHHHHHHHHHHHHHHhcC-H-HHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc------CceEE
Confidence 9999999999999999975 3 38999999999999999888899999999999999999988777775 24667
Q ss_pred eccccCCCCCCCCCCCCCCCcccceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhcC
Q 026949 166 VDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS 226 (230)
Q Consensus 166 vd~~~~L~~~~~~~~~~~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF~ 226 (230)
+++ | ..+.|||+|.+.+|+|.|||||++||+.+++.+.|.|++.|||
T Consensus 152 i~~----~----------~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~~LF~ 198 (198)
T 2dm9_A 152 LGE----T----------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG 198 (198)
T ss_dssp ECC----C----------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred ECC----C----------CCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHHHhcC
Confidence 752 1 3789999999999999999999999999999999999999997
No 4
>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}
Probab=99.90 E-value=1.9e-26 Score=173.05 Aligned_cols=102 Identities=22% Similarity=0.323 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHH-HHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCcc
Q 026949 109 SYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS 187 (230)
Q Consensus 109 ~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~-l~~~~~~~~~~~g~~~~~v~vd~~~~L~~~~~~~~~~~~~~~ 187 (230)
.|+++|++||.+|+..+++++++|+|+++|.+++++. ++++..+|+..+|+ +++|++++ | .+|.
T Consensus 4 ~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~-~~~v~~~~-------~-------~~~~ 68 (106)
T 3lg8_A 4 EYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKK-VTVLKKGE-------P-------VDIA 68 (106)
T ss_dssp STTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSS-CCCCCCCC-------C-------CSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCC-eEEEEeCC-------C-------cccc
Confidence 7999999999999999999999999999999999998 99999999988887 55555542 2 4899
Q ss_pred cceEEEecCCcEEEeccHHHHHHHHHHhcHHHHHHHhc
Q 026949 188 GGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV 225 (230)
Q Consensus 188 GGvvl~s~dg~i~vdnTle~rl~~~~~~~~~~I~~~LF 225 (230)
|||+++|.||+|.|||||++||++++++++|+|++.||
T Consensus 69 GGvil~s~dg~I~vdNTle~rL~~l~~~~~~eI~~~LF 106 (106)
T 3lg8_A 69 GGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEKLF 106 (106)
T ss_dssp CBCBCSSCSCBCCCCSHHHHSHHHHHHHHHHHTTTSCC
T ss_pred ccEEEEeCCCCEEEECCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999
No 5
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=97.56 E-value=0.00028 Score=45.33 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026949 9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR 52 (230)
Q Consensus 9 ~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~ 52 (230)
-|+++++.|+++|+.+|+.|+.+|+.+++ .|+.++..++.
T Consensus 7 gle~i~~kI~~eA~~eA~~Il~eA~~eA~----~Ii~eA~~~Ae 46 (52)
T 2kk7_A 7 GVDKIKSKILDDAKAEANKIISEAEAEKA----KILEKAKEEAE 46 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 38999999999999999999999999988 89888776654
No 6
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=97.40 E-value=0.00036 Score=56.09 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Q 026949 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK--------IEYSMQLNA 76 (230)
Q Consensus 5 ~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~--------~~~S~~~~~ 76 (230)
++-++...+.++|+++|+++|++|+.+|+++|+.++..+++++...+..........+....+ .........
T Consensus 10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~~ev~~~~~~~ 89 (198)
T 2dm9_A 10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEE 89 (198)
T ss_dssp -----------------------------------------------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999999999999999999999888777766555444332221 122333344
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHh----hccChhHHHHHHHHHHHHHHHhcC
Q 026949 77 SRIKVLQ----AQDDLVSNMMEAASKEVLN----VSRDHNSYKKLLKGLIVQSLLRLK 126 (230)
Q Consensus 77 ~R~~~l~----ar~~~i~~v~~~a~~~L~~----~~~~~~~Y~~~L~~Li~ea~~~l~ 126 (230)
++..+.. ...+++..++.++...+.. +.-+| ...+++..++......++
T Consensus 90 a~~~l~~l~~~~y~~~l~~li~e~~~~~~~~~v~i~v~~-~D~~~v~~~~~~~~~~~~ 146 (198)
T 2dm9_A 90 VKRRLETMSEDEYFESVKALLKEAIKELNEKKVRVMSNE-KTLGLIASRIEEIKSELG 146 (198)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHTCSEEEEECCH-HHHHHHHHTHHHHHHHCT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCEEEEECH-hHHHHHHHHHHHHHHHhc
Confidence 4433222 2357888888888887732 33356 556666888877666664
No 7
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=97.23 E-value=0.012 Score=47.24 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 026949 6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEY--------SMQLNAS 77 (230)
Q Consensus 6 ~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~--------S~~~~~~ 77 (230)
.+.+.+.-.+.|+++|+.+|++|+.+|+++|+..+..+..+........+++....+....+... .......
T Consensus 7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a 86 (187)
T 3v6i_A 7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRV 86 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999999999999777777777776666666666655554433222 2233344
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHh---hccChhHHHHHHHHHHHH
Q 026949 78 RIKVLQA-----QDDLVSNMMEAASKEVLN---VSRDHNSYKKLLKGLIVQ 120 (230)
Q Consensus 78 R~~~l~a-----r~~~i~~v~~~a~~~L~~---~~~~~~~Y~~~L~~Li~e 120 (230)
+..+.+. ...++..++.++...|.. +.-+| .-..++..++..
T Consensus 87 ~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~~~~~vv~~~-~D~~~v~~~~~~ 136 (187)
T 3v6i_A 87 REALEALPQKPEWPEVVRKLALEALEALPGAKALVANP-EDLPHLEALARE 136 (187)
T ss_dssp HHHHHHGGGSTTHHHHHHHHHHHHHHHCTTCCEEEECT-TTHHHHHHHHHH
T ss_pred HHHHHhhhCCccHHHHHHHHHHHHHHHcCCCCeEEECH-HHHHHHHHHHHh
Confidence 4333221 446667777766665532 11233 224466666554
No 8
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=95.55 E-value=0.19 Score=32.56 Aligned_cols=30 Identities=13% Similarity=-0.044 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026949 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEA 46 (230)
Q Consensus 17 I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~ 46 (230)
.+.+|+.++.+|+..|+.+++.....++..
T Consensus 3 ~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~ 32 (61)
T 1l2p_A 3 QLKKAKAEAQVIIEQANKRRSQILDEAKAE 32 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666333333333
No 9
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=94.77 E-value=0.4 Score=31.01 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK 58 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~ 58 (230)
...-...|+.+|+..+..|...+..++..+..+|+..+...|..+..+.
T Consensus 7 Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A 55 (61)
T 1l2p_A 7 AKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRA 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777777777789888888776655443
No 10
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=94.24 E-value=0.13 Score=32.70 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949 4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 4 ~~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~ 37 (230)
+++..+-..-...|+.+|+.+|++|+.+|+.+++
T Consensus 13 ~kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae 46 (52)
T 2kk7_A 13 SKILDDAKAEANKIISEAEAEKAKILEKAKEEAE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778889999999999999999999887
No 11
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=91.23 E-value=0.46 Score=30.52 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026949 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKK 50 (230)
Q Consensus 20 eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~k 50 (230)
+|+.+|++|+.+|.++++ .++.+++.+
T Consensus 23 eAE~~A~~iVeeA~~ea~----~ii~eAree 49 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAE----QIKAEAIEE 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 566677777777766655 555554444
No 12
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=87.52 E-value=10 Score=30.83 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026949 17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA 96 (230)
Q Consensus 17 I~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~~~~~~~~~k~~~~S~~~~~~R~~~l~ar~~~i~~v~~~a 96 (230)
+..+.+.-..-|..+|+++|+ .|..++.++...+..+...++... +......+...+-..++.....+...+
T Consensus 13 v~~~i~~m~~fI~qEA~eKA~----EI~~kAeeE~~~ek~~~v~~~~~~----i~~~~ek~~kq~e~~~~i~~S~~~~~a 84 (233)
T 4efa_E 13 VNDELNKMQAFIRKEAEEKAK----EIQLKADQEYEIEKTNIVRNETNN----IDGNFKSKLKKAMLSQQITKSTIANKM 84 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555667788888776 787666554443333332222221 112222222233334445556666666
Q ss_pred HHHHHhhccChhHHHHHHHHHHHHHHHhc
Q 026949 97 SKEVLNVSRDHNSYKKLLKGLIVQSLLRL 125 (230)
Q Consensus 97 ~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l 125 (230)
+.++.. ...+++..++.++...|
T Consensus 85 R~~vL~------ar~e~i~~v~~~a~~~L 107 (233)
T 4efa_E 85 RLKVLS------AREQSLDGIFEETKEKL 107 (233)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHH
Confidence 665544 35677888888887766
No 13
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=84.30 E-value=1.6 Score=27.97 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949 10 IQQMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 10 i~~~~~~I~~eA~ekA~eI~~~A~~ea~ 37 (230)
.++-...|..+|++++++|+..|++++.
T Consensus 24 AE~~A~~iVeeA~~ea~~ii~eAreeAk 51 (56)
T 2k6i_A 24 AEEQAVKEIEEAKNRAEQIKAEAIEEAK 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999986
No 14
>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A
Probab=82.92 E-value=0.056 Score=43.43 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=15.1
Q ss_pred CCCcccceEEEecCCcEEEeccHHHHHHHHHHhc
Q 026949 183 GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK 216 (230)
Q Consensus 183 ~~~~~GGvvl~s~dg~i~vdnTle~rl~~~~~~~ 216 (230)
+++++|||+|.- |.-++|.|+.++|+.+...+
T Consensus 155 DpsLiGG~~v~v--gd~viD~Sv~~~L~~l~~~L 186 (190)
T 2wss_S 155 DPSIMGGMIVRI--GEKYVDMSAKTKIQKLSRAM 186 (190)
T ss_dssp ----------------CCTTTTTTTTTTTTCTTT
T ss_pred ChhHhCeEEEEE--CCEEEehhHHHHHHHHHHHH
Confidence 358999999997 77779999999998776654
No 15
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=71.31 E-value=21 Score=26.24 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026949 20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYER 57 (230)
Q Consensus 20 eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~ki~~~~~~ 57 (230)
+|+.+|.+|+.+|+.. +.+-+..++..+..+++.
T Consensus 17 ~AEk~A~~iV~~ARk~----k~~rLKqAK~EA~~EIe~ 50 (119)
T 4efa_G 17 QAEKEAHEIVSKARKY----RQDKLKQAKTDAAKEIDS 50 (119)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 5889999999988875 445566666655555543
No 16
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=66.13 E-value=33 Score=24.49 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 026949 18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK 50 (230)
Q Consensus 18 ~~eA~ekA~eI~~~A~~ea~~ek~~i~~~~~~k 50 (230)
+.+|++.|...+..|+.++. .|+.++..+
T Consensus 22 lE~Ar~eA~~~v~~AEAeA~----ril~eAe~~ 50 (105)
T 3v6i_B 22 LEAAKKEAEERVKRAEAEAK----ALLEEAEAK 50 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 34566666666666666655 566555443
No 17
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=64.43 E-value=40 Score=24.75 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026949 11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQL 43 (230)
Q Consensus 11 ~~~~~~I~~eA~ekA~eI~~~A~~ea~~ek~~i 43 (230)
++-...|.++|+..-..-+.+|..+|..|...+
T Consensus 19 Ek~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~y 51 (119)
T 4efa_G 19 EKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSY 51 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888999888888889999888544444
No 18
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=56.62 E-value=51 Score=23.52 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949 12 QMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 12 ~~~~~I~~eA~ekA~eI~~~A~~ea~ 37 (230)
+-......+|+.+|..|+..|++.+.
T Consensus 27 ~eA~~~v~~AEAeA~ril~eAe~~a~ 52 (105)
T 3v6i_B 27 KEAEERVKRAEAEAKALLEEAEAKAK 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888889988888765
No 19
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=31.12 E-value=63 Score=22.69 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHH
Q 026949 85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIV 119 (230)
Q Consensus 85 r~~~i~~v~~~a~~~L~~~~~~~~~Y~~~L~~Li~ 119 (230)
+..-.+++|++....|..+.....+|..+|..+|.
T Consensus 46 kr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~ 80 (94)
T 3fx7_A 46 RRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIR 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 44556778888999998887765689999999886
No 20
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=30.38 E-value=85 Score=21.14 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCcEEEEecccchHHHHHHHHHH
Q 026949 95 AASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESA 149 (230)
Q Consensus 95 ~a~~~L~~~~~~~~~Y~~~L~~Li~ea~~~l~~~e~~v~~~~~D~~lv~~~l~~~ 149 (230)
.+..+|..+..++ .|..|++.|+.+.+..+. ..|..-+...+.-+
T Consensus 22 ~l~~kl~~~~ks~-~y~~f~~~lir~l~~~L~---------~~dikkv~s~l~~l 66 (80)
T 3bpj_A 22 LLKDKITQYEKSL-YYASFLEVLVRDVCISLE---------IDDLKKITNSLTVL 66 (80)
T ss_dssp HHHHHHGGGTTST-THHHHHHHHHHHHHTTSC---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCh-hHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHH
Confidence 3445577777777 899999999999987652 44666666655543
No 21
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=25.39 E-value=86 Score=25.17 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=22.3
Q ss_pred ccceEEEecCCc----------EEEeccHHHHHHHHHHh
Q 026949 187 SGGVVVASRDGK----------IVCENTLDARLDVVFRK 215 (230)
Q Consensus 187 ~GGvvl~s~dg~----------i~vdnTle~rl~~~~~~ 215 (230)
.||+|+..++-. |.++.+++.|+++.+.+
T Consensus 145 ~~~~V~~gr~~~~~v~~~~~~~ifl~A~~e~r~~R~~~~ 183 (252)
T 4e22_A 145 APGLIADGRDMGTIVFPDAPVKIFLDASSQERAHRRMLQ 183 (252)
T ss_dssp SSCEEEEESSCCCCCSTTCSEEEEEECCHHHHHHHHHHH
T ss_pred CCCEEEEeceeceeecCCCCEEEEEECCHHHHHHHHHHH
Confidence 477777665433 89999999999988764
No 22
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=23.78 E-value=1.8e+02 Score=23.74 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026949 5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFN 37 (230)
Q Consensus 5 ~~~~~i~~~~~~I~~eA~ekA~eI~~~A~~ea~ 37 (230)
+..+.|+..+..|+.+|-++|.+|+.+=+...+
T Consensus 146 ~ta~~iD~Ev~~il~~ay~~a~~iL~~nr~~L~ 178 (238)
T 2di4_A 146 DLLREIDEEVKRIITEQYEKAKAIVEEYKEPLK 178 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888876665544
No 23
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=20.34 E-value=80 Score=23.12 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.5
Q ss_pred CcccceEEEecCCcEEEeccHHHHHH
Q 026949 185 SCSGGVVVASRDGKIVCENTLDARLD 210 (230)
Q Consensus 185 ~~~GGvvl~s~dg~i~vdnTle~rl~ 210 (230)
++.=|+++.+.+|+|.+=|.+..++.
T Consensus 25 ~l~~Gii~lD~~g~I~~~N~~~e~~s 50 (125)
T 1nwz_A 25 GLAFGAIQLDGDGNILQYNAAEGDIT 50 (125)
T ss_dssp TCSSEEEEEETTCBEEEECHHHHHHH
T ss_pred ccCceEEEECCCCEEEEEHHHHHHHh
Confidence 34569999999999999999998874
Done!