BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026950
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of
Atwrky4
pdb|2LEX|A Chain A, Complex Of The C-Terminal Wrky Domain Of Atwrky4 And A
W-Box Dna
Length = 78
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 53/67 (79%)
Query: 143 FKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITT 202
+T S++D+LDDGY+WRKYGQKVVK +PRSYY+CT C V+K VER A DP+ V+TT
Sbjct: 8 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 203 YEGRHVH 209
YEG+H H
Sbjct: 68 YEGKHNH 74
>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1,
An Sa-Induced And Partially Npr1-Dependent Transcription
Factor
Length = 76
Score = 90.1 bits (222), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/70 (54%), Positives = 51/70 (72%)
Query: 140 RFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMV 199
R T + D+++DGY+WRKYGQK VK + +PRSYYRC+ C VKK VER + D +++
Sbjct: 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 200 ITTYEGRHVH 209
ITTYEG+H H
Sbjct: 62 ITTYEGKHDH 71
>pdb|3UX4|A Chain A, Crystal Structure Of The Urea Channel From The Human
Gastric Pathogen Helicobacter Pylori
pdb|3UX4|B Chain B, Crystal Structure Of The Urea Channel From The Human
Gastric Pathogen Helicobacter Pylori
pdb|3UX4|C Chain C, Crystal Structure Of The Urea Channel From The Human
Gastric Pathogen Helicobacter Pylori
Length = 195
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 198 MVITTYEGRHVHSPSHDQEDSSQASSHLNNFF 229
+V+ TY H +P ED Q S HL +F+
Sbjct: 45 VVVITYSALHPTAPVEGAEDIVQVSHHLTSFY 76
>pdb|2RF7|A Chain A, Crystal Structure Of The Escherichia Coli Nrfa Mutant
Q263e
pdb|2RF7|B Chain B, Crystal Structure Of The Escherichia Coli Nrfa Mutant
Q263e
pdb|2RF7|C Chain C, Crystal Structure Of The Escherichia Coli Nrfa Mutant
Q263e
pdb|2RF7|D Chain D, Crystal Structure Of The Escherichia Coli Nrfa Mutant
Q263e
Length = 441
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 170 QHPRSY--YRCTQDNCRVKKRVERLAEDPRMVI 200
QHP Y ++ T + +RV+ LAEDPR+VI
Sbjct: 12 QHPDQYLSWKATSEQ---SERVDALAEDPRLVI 41
>pdb|1GU6|A Chain A, Structure Of The Periplasmic Cytochrome C Nitrite
Reductase From Escherichia Coli
pdb|1GU6|C Chain C, Structure Of The Periplasmic Cytochrome C Nitrite
Reductase From Escherichia Coli
pdb|1GU6|E Chain E, Structure Of The Periplasmic Cytochrome C Nitrite
Reductase From Escherichia Coli
pdb|1GU6|G Chain G, Structure Of The Periplasmic Cytochrome C Nitrite
Reductase From Escherichia Coli
pdb|2RDZ|A Chain A, High Resolution Crystal Structure Of The Escherichia Coli
Cytochrome C Nitrite Reductase.
pdb|2RDZ|B Chain B, High Resolution Crystal Structure Of The Escherichia Coli
Cytochrome C Nitrite Reductase.
pdb|2RDZ|C Chain C, High Resolution Crystal Structure Of The Escherichia Coli
Cytochrome C Nitrite Reductase.
pdb|2RDZ|D Chain D, High Resolution Crystal Structure Of The Escherichia Coli
Cytochrome C Nitrite Reductase.
pdb|3L1T|A Chain A, E. Coli Nrfa Sulfite Ocmplex
pdb|3L1T|B Chain B, E. Coli Nrfa Sulfite Ocmplex
pdb|3L1T|C Chain C, E. Coli Nrfa Sulfite Ocmplex
pdb|3L1T|D Chain D, E. Coli Nrfa Sulfite Ocmplex
pdb|3TOR|A Chain A, Crystal Structure Of Escherichia Coli Nrfa With Europium
Bound
pdb|3TOR|B Chain B, Crystal Structure Of Escherichia Coli Nrfa With Europium
Bound
pdb|3TOR|C Chain C, Crystal Structure Of Escherichia Coli Nrfa With Europium
Bound
pdb|3TOR|D Chain D, Crystal Structure Of Escherichia Coli Nrfa With Europium
Bound
Length = 452
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 170 QHPRSY--YRCTQDNCRVKKRVERLAEDPRMVI 200
QHP Y ++ T + +RV+ LAEDPR+VI
Sbjct: 22 QHPDQYLSWKATSEQ---SERVDALAEDPRLVI 51
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 153 DDGYKWRKYGQKVVKNT-QHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYE 204
DD + + K ++V Q P S YR ++ + RV ++ ++ V TY+
Sbjct: 224 DDIFAYEKRFDEIVGGMDQLPTSMYRAIEEKVKFNARVIKIQQNANQVTVTYQ 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,321,542
Number of Sequences: 62578
Number of extensions: 225601
Number of successful extensions: 420
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 9
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)