Query 026950
Match_columns 230
No_of_seqs 157 out of 677
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 03:53:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 3.8E-36 1.3E-40 226.0 6.3 74 140-213 2-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 5.1E-36 1.8E-40 226.3 5.3 75 139-213 4-78 (78)
3 2rpr_A Flywch-type zinc finger 71.5 1.7 6E-05 31.4 1.8 50 151-213 23-75 (87)
4 1cz6_A Protein (androctonin); 29.4 14 0.00047 22.4 0.4 8 174-181 16-23 (26)
5 1xiw_B T-cell surface glycopro 15.5 26 0.00087 25.3 -0.6 27 153-179 17-53 (79)
6 1xiw_A T-cell surface glycopro 10.6 62 0.0021 25.2 0.2 30 152-181 32-80 (105)
7 3ed7_A Tsase, TS, thymidylate 8.2 58 0.002 29.4 -0.9 11 154-164 117-127 (295)
8 3kgb_A Thymidylate synthase 1/ 8.1 57 0.002 29.4 -1.0 11 154-164 114-124 (294)
9 2ysa_A Retinoblastoma-binding 8.0 1.7E+02 0.0059 20.0 1.7 19 169-187 2-27 (55)
10 1qxn_A SUD, sulfide dehydrogen 7.7 1.4E+02 0.0047 22.4 1.2 24 149-172 110-134 (137)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=3.8e-36 Score=226.01 Aligned_cols=74 Identities=51% Similarity=0.970 Sum_probs=71.1
Q ss_pred ceEEeecCCcccCCCCchhhhccceecCCCCCCCcccccCCCCCccccceeeecCCCCEEEEEEeeccCCCCCC
Q 026950 140 RFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSH 213 (230)
Q Consensus 140 rv~~kt~S~~~~~~DGy~WRKYGQK~IkGs~~PRsYYRCt~~gC~AkK~Vqr~~~Dp~~~~vTY~G~HnH~ps~ 213 (230)
||++++.+++++++|||.|||||||.|||+++||+||||++.||+|+|+|||+++||.+++|||+|+|||+.+.
T Consensus 2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999998764
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=5.1e-36 Score=226.32 Aligned_cols=75 Identities=56% Similarity=1.006 Sum_probs=68.7
Q ss_pred cceEEeecCCcccCCCCchhhhccceecCCCCCCCcccccCCCCCccccceeeecCCCCEEEEEEeeccCCCCCC
Q 026950 139 PRFCFKTMSDIDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSH 213 (230)
Q Consensus 139 prv~~kt~S~~~~~~DGy~WRKYGQK~IkGs~~PRsYYRCt~~gC~AkK~Vqr~~~Dp~~~~vTY~G~HnH~ps~ 213 (230)
.++++++.+++++++|||.|||||||.|||+++||+||||++.+|+|+|+|||+.+||.+++|||+|+|||+.+.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 467889999999999999999999999999999999999999999999999999999999999999999998763
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=71.47 E-value=1.7 Score=31.44 Aligned_cols=50 Identities=18% Similarity=0.436 Sum_probs=31.5
Q ss_pred cCCCCchhhhccceecCCCCCCCcccccCC---CCCccccceeeecCCCCEEEEEEeeccCCCCCC
Q 026950 151 VLDDGYKWRKYGQKVVKNTQHPRSYYRCTQ---DNCRVKKRVERLAEDPRMVITTYEGRHVHSPSH 213 (230)
Q Consensus 151 ~~~DGy~WRKYGQK~IkGs~~PRsYYRCt~---~gC~AkK~Vqr~~~Dp~~~~vTY~G~HnH~ps~ 213 (230)
++-|||.-.+--+ ...+.|.+|+. .+|+|+=.... ++ +.-.+.|||+|..
T Consensus 23 Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~-----~~~~~~HnH~p~~ 75 (87)
T 2rpr_A 23 LVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR-----IMVMRSHCHQPDL 75 (87)
T ss_dssp EEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE-----EEECSCCSSCCCH
T ss_pred EEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC-----EECCCCcCCCCch
Confidence 4568887665221 12368999997 48999744332 22 2346889998754
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=29.41 E-value=14 Score=22.36 Aligned_cols=8 Identities=50% Similarity=1.364 Sum_probs=6.7
Q ss_pred cccccCCC
Q 026950 174 SYYRCTQD 181 (230)
Q Consensus 174 sYYRCt~~ 181 (230)
.||+|+++
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999975
No 5
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=15.51 E-value=26 Score=25.28 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=18.6
Q ss_pred CCCchhhhcccee--------cC--CCCCCCcccccC
Q 026950 153 DDGYKWRKYGQKV--------VK--NTQHPRSYYRCT 179 (230)
Q Consensus 153 ~DGy~WRKYGQK~--------Ik--Gs~~PRsYYRCt 179 (230)
.+++.|.|-|... +. ...-||++|.|.
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~ 53 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCN 53 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEec
Confidence 5668898887642 23 335589999994
No 6
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=10.58 E-value=62 Score=25.18 Aligned_cols=30 Identities=13% Similarity=0.364 Sum_probs=20.3
Q ss_pred CCCCchhhhcccee----------------cCCCCC---CCcccccCCC
Q 026950 152 LDDGYKWRKYGQKV----------------VKNTQH---PRSYYRCTQD 181 (230)
Q Consensus 152 ~~DGy~WRKYGQK~----------------IkGs~~---PRsYYRCt~~ 181 (230)
+++...|.|-|+.. +.++-. ||.||.|...
T Consensus 32 ~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~~ 80 (105)
T 1xiw_A 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 80 (105)
T ss_dssp TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEET
T ss_pred CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEccC
Confidence 34558888888653 445533 8999999643
No 7
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=8.24 E-value=58 Score=29.44 Aligned_cols=11 Identities=36% Similarity=1.289 Sum_probs=8.7
Q ss_pred CCchhhhccce
Q 026950 154 DGYKWRKYGQK 164 (230)
Q Consensus 154 DGy~WRKYGQK 164 (230)
=|++||.+|.+
T Consensus 117 YG~QwR~~~~~ 127 (295)
T 3ed7_A 117 YGFQWRHFGAE 127 (295)
T ss_dssp THHHHHHBTCC
T ss_pred hhhhhhccCCc
Confidence 47899999864
No 8
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=8.12 E-value=57 Score=29.41 Aligned_cols=11 Identities=36% Similarity=1.334 Sum_probs=8.5
Q ss_pred CCchhhhccce
Q 026950 154 DGYKWRKYGQK 164 (230)
Q Consensus 154 DGy~WRKYGQK 164 (230)
=|++||.+|.+
T Consensus 114 YG~QwR~~~~~ 124 (294)
T 3kgb_A 114 YGFQWRHFGAR 124 (294)
T ss_dssp HHHHHHSBTCC
T ss_pred cchhhhcCCCc
Confidence 36899999864
No 9
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=7.97 E-value=1.7e+02 Score=19.95 Aligned_cols=19 Identities=21% Similarity=0.644 Sum_probs=12.0
Q ss_pred CCCCCc--ccccCC-----CCCcccc
Q 026950 169 TQHPRS--YYRCTQ-----DNCRVKK 187 (230)
Q Consensus 169 s~~PRs--YYRCt~-----~gC~AkK 187 (230)
..-|+. .|||.. .+|+..+
T Consensus 2 ~~~p~~~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 2 SSGSSGYTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp CCSSSSCCCTTTCCTTSCGGGCSGGG
T ss_pred CCCCCCCccccCCCcCcccccCCCCC
Confidence 344554 499997 4698544
No 10
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=7.72 E-value=1.4e+02 Score=22.38 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=18.6
Q ss_pred cccCCCCc-hhhhccceecCCCCCC
Q 026950 149 IDVLDDGY-KWRKYGQKVVKNTQHP 172 (230)
Q Consensus 149 ~~~~~DGy-~WRKYGQK~IkGs~~P 172 (230)
+..++.|+ .|++.|-..++++++.
T Consensus 110 v~~l~GG~~~W~~~g~p~~~~~~~~ 134 (137)
T 1qxn_A 110 IYNSEGGMDKWLEEGLPSLDRSHHH 134 (137)
T ss_dssp EEEESSCHHHHHHTTCCEECCCCCC
T ss_pred eEEEcCcHHHHHHCCCCcccccccc
Confidence 34567887 5999999999888753
Done!