Query 026951
Match_columns 230
No_of_seqs 173 out of 1311
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 02:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02459 probable adenylate ki 100.0 3.5E-37 7.5E-42 259.7 19.8 169 61-229 27-221 (261)
2 PLN02674 adenylate kinase 100.0 3.5E-37 7.6E-42 258.4 19.2 166 62-229 30-215 (244)
3 PTZ00088 adenylate kinase 1; P 100.0 8.1E-35 1.7E-39 242.9 19.4 168 62-229 5-197 (229)
4 PRK14526 adenylate kinase; Pro 100.0 3.1E-34 6.8E-39 236.8 18.9 163 65-229 2-179 (211)
5 KOG3079 Uridylate kinase/adeny 100.0 4.1E-34 8.8E-39 225.7 18.1 156 60-229 5-163 (195)
6 TIGR01351 adk adenylate kinase 100.0 4.4E-34 9.6E-39 236.0 18.8 164 65-229 1-181 (210)
7 PRK14529 adenylate kinase; Pro 100.0 3.5E-34 7.7E-39 237.5 18.1 159 64-225 1-182 (223)
8 PRK00279 adk adenylate kinase; 100.0 4E-32 8.6E-37 225.1 18.3 164 64-229 1-184 (215)
9 PF00406 ADK: Adenylate kinase 100.0 4.9E-31 1.1E-35 207.0 15.8 139 68-229 1-144 (151)
10 PRK14530 adenylate kinase; Pro 100.0 1.7E-30 3.7E-35 215.3 18.9 161 63-229 3-183 (215)
11 KOG3078 Adenylate kinase [Nucl 100.0 5.2E-31 1.1E-35 217.3 14.7 166 62-229 14-195 (235)
12 PRK13808 adenylate kinase; Pro 100.0 3.5E-30 7.6E-35 224.0 18.6 157 64-229 1-163 (333)
13 PRK14531 adenylate kinase; Pro 100.0 4.8E-30 1E-34 207.6 18.1 148 63-229 2-154 (183)
14 PRK14528 adenylate kinase; Pro 100.0 6.7E-30 1.5E-34 207.4 18.7 152 64-229 2-158 (186)
15 cd01428 ADK Adenylate kinase ( 100.0 1.4E-29 3E-34 205.7 18.1 163 65-229 1-174 (194)
16 PLN02842 nucleotide kinase 100.0 2.4E-29 5.3E-34 228.4 18.2 162 67-229 1-174 (505)
17 PRK14532 adenylate kinase; Pro 100.0 5.6E-29 1.2E-33 201.8 18.2 150 65-228 2-156 (188)
18 COG0563 Adk Adenylate kinase a 100.0 3.7E-28 8E-33 195.5 17.6 149 64-229 1-154 (178)
19 PRK14527 adenylate kinase; Pro 100.0 6.6E-28 1.4E-32 196.3 19.0 154 61-229 4-162 (191)
20 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 3.6E-28 7.8E-33 196.0 17.3 150 65-229 1-154 (183)
21 PLN02200 adenylate kinase fami 100.0 6.6E-28 1.4E-32 202.2 19.1 151 62-229 42-194 (234)
22 PRK02496 adk adenylate kinase; 100.0 1.5E-27 3.2E-32 192.9 17.8 148 64-229 2-154 (184)
23 TIGR01360 aden_kin_iso1 adenyl 99.9 6E-25 1.3E-29 177.4 19.6 153 63-228 3-156 (188)
24 PRK01184 hypothetical protein; 99.7 1.5E-15 3.3E-20 122.5 16.2 118 64-189 2-126 (184)
25 COG0703 AroK Shikimate kinase 99.7 3.6E-15 7.9E-20 118.3 14.3 143 63-229 2-150 (172)
26 PRK08356 hypothetical protein; 99.6 1.4E-15 3E-20 124.2 11.5 120 62-190 4-138 (195)
27 PRK00625 shikimate kinase; Pro 99.6 2.2E-15 4.8E-20 120.8 11.3 145 64-228 1-147 (173)
28 PRK08118 topology modulation p 99.6 4.4E-15 9.6E-20 118.5 10.2 100 64-189 2-101 (167)
29 PHA02530 pseT polynucleotide k 99.6 5.4E-15 1.2E-19 128.1 10.6 146 63-229 2-152 (300)
30 PRK06217 hypothetical protein; 99.6 1.1E-14 2.3E-19 117.8 10.2 106 64-190 2-107 (183)
31 PRK13949 shikimate kinase; Pro 99.6 1.4E-13 3E-18 110.1 15.1 109 64-187 2-114 (169)
32 PRK13973 thymidylate kinase; P 99.6 1.2E-13 2.6E-18 114.3 15.0 148 62-225 2-178 (213)
33 PRK03839 putative kinase; Prov 99.6 2.1E-14 4.5E-19 115.5 10.0 101 65-189 2-102 (180)
34 KOG3347 Predicted nucleotide k 99.5 4.3E-14 9.3E-19 108.7 9.2 111 62-190 6-116 (176)
35 PF13671 AAA_33: AAA domain; P 99.5 4.7E-13 1E-17 103.1 13.2 113 65-190 1-121 (143)
36 PRK14730 coaE dephospho-CoA ki 99.5 4.1E-13 8.9E-18 109.7 12.7 121 64-189 2-148 (195)
37 cd00464 SK Shikimate kinase (S 99.5 1.6E-12 3.5E-17 101.3 14.6 142 66-229 2-146 (154)
38 PRK00081 coaE dephospho-CoA ki 99.5 5E-13 1.1E-17 109.1 11.7 120 63-189 2-147 (194)
39 COG1936 Predicted nucleotide k 99.5 2.3E-13 5.1E-18 107.3 7.9 105 64-191 1-107 (180)
40 COG0237 CoaE Dephospho-CoA kin 99.4 2.5E-12 5.4E-17 105.4 13.9 118 63-189 2-146 (201)
41 cd02022 DPCK Dephospho-coenzym 99.4 8.8E-13 1.9E-17 106.3 10.9 119 65-189 1-144 (179)
42 PRK13947 shikimate kinase; Pro 99.4 1E-12 2.3E-17 104.5 10.8 111 64-189 2-116 (171)
43 PRK08233 hypothetical protein; 99.4 7.3E-13 1.6E-17 106.1 9.6 119 62-189 2-120 (182)
44 PRK13948 shikimate kinase; Pro 99.4 3.6E-12 7.7E-17 103.0 13.4 143 62-228 9-155 (182)
45 PRK03731 aroL shikimate kinase 99.4 2.9E-12 6.3E-17 102.1 12.5 147 64-229 3-152 (171)
46 PRK04040 adenylate kinase; Pro 99.4 2.1E-12 4.5E-17 105.0 11.6 117 63-186 2-130 (188)
47 PRK07261 topology modulation p 99.4 6.5E-13 1.4E-17 106.4 8.2 101 64-189 1-101 (171)
48 COG1102 Cmk Cytidylate kinase 99.4 2.5E-12 5.4E-17 100.3 11.0 112 64-189 1-113 (179)
49 PRK13974 thymidylate kinase; P 99.4 3E-12 6.6E-17 105.9 11.3 126 62-188 2-156 (212)
50 PRK05057 aroK shikimate kinase 99.4 3.2E-12 6.9E-17 102.4 10.8 145 63-229 4-152 (172)
51 PRK06762 hypothetical protein; 99.4 7.9E-12 1.7E-16 99.1 12.5 112 62-189 1-118 (166)
52 cd02021 GntK Gluconate kinase 99.4 1.1E-11 2.3E-16 96.7 13.0 116 65-190 1-121 (150)
53 PRK13946 shikimate kinase; Pro 99.4 1E-11 2.3E-16 100.4 13.1 115 62-189 9-125 (184)
54 PLN02924 thymidylate kinase 99.4 3.6E-11 7.7E-16 100.1 16.4 124 55-185 8-154 (220)
55 TIGR02173 cyt_kin_arch cytidyl 99.4 9.7E-12 2.1E-16 98.6 12.5 113 64-189 1-114 (171)
56 PRK13975 thymidylate kinase; P 99.4 3.8E-11 8.2E-16 97.6 16.0 115 63-188 2-135 (196)
57 PRK14734 coaE dephospho-CoA ki 99.4 1.3E-11 2.8E-16 101.3 13.2 118 64-188 2-147 (200)
58 PRK12339 2-phosphoglycerate ki 99.4 3.2E-12 7E-17 104.6 9.2 122 62-190 2-143 (197)
59 PLN02422 dephospho-CoA kinase 99.4 1.5E-11 3.2E-16 102.9 13.1 119 64-189 2-148 (232)
60 PRK14021 bifunctional shikimat 99.4 6.4E-12 1.4E-16 117.3 12.2 151 60-229 3-157 (542)
61 PRK00131 aroK shikimate kinase 99.3 1.4E-11 3.1E-16 97.7 11.6 114 62-188 3-118 (175)
62 PRK04182 cytidylate kinase; Pr 99.3 6.3E-12 1.4E-16 100.4 9.4 113 64-189 1-114 (180)
63 PTZ00451 dephospho-CoA kinase; 99.3 2.8E-11 6.1E-16 102.0 13.4 119 64-189 2-159 (244)
64 PRK00698 tmk thymidylate kinas 99.3 4.3E-11 9.3E-16 97.7 14.1 124 62-189 2-150 (205)
65 TIGR00152 dephospho-CoA kinase 99.3 7.6E-12 1.6E-16 101.5 9.3 119 65-189 1-146 (188)
66 PRK14733 coaE dephospho-CoA ki 99.3 2.3E-11 4.9E-16 99.9 11.7 125 62-190 5-152 (204)
67 PF01121 CoaE: Dephospho-CoA k 99.3 1.1E-11 2.5E-16 99.9 9.8 120 64-189 1-145 (180)
68 PLN02199 shikimate kinase 99.3 3.3E-11 7.1E-16 103.4 12.7 149 62-229 101-257 (303)
69 PRK14731 coaE dephospho-CoA ki 99.3 3.4E-11 7.4E-16 99.3 12.3 122 62-189 4-156 (208)
70 TIGR00041 DTMP_kinase thymidyl 99.3 3.8E-11 8.3E-16 97.5 11.8 120 63-189 3-150 (195)
71 TIGR01313 therm_gnt_kin carboh 99.3 1E-10 2.3E-15 92.4 13.0 109 66-189 1-116 (163)
72 PRK08154 anaerobic benzoate ca 99.2 1.3E-10 2.8E-15 101.4 12.9 120 58-189 128-249 (309)
73 cd01672 TMPK Thymidine monopho 99.2 5.3E-10 1.2E-14 90.3 15.5 119 64-189 1-148 (200)
74 PF13207 AAA_17: AAA domain; P 99.2 3.3E-12 7.2E-17 95.7 2.3 110 65-188 1-111 (121)
75 cd02020 CMPK Cytidine monophos 99.2 2.9E-11 6.2E-16 93.4 7.1 103 65-187 1-103 (147)
76 COG0125 Tmk Thymidylate kinase 99.2 3.1E-10 6.6E-15 93.5 13.3 125 62-190 2-151 (208)
77 PRK14732 coaE dephospho-CoA ki 99.2 7.9E-11 1.7E-15 96.3 9.6 119 66-189 2-144 (196)
78 PRK06547 hypothetical protein; 99.2 4.1E-11 8.9E-16 96.0 7.5 125 61-189 13-140 (172)
79 PRK13976 thymidylate kinase; P 99.2 6.9E-10 1.5E-14 91.7 14.3 118 64-189 1-147 (209)
80 PRK03333 coaE dephospho-CoA ki 99.2 9E-11 2E-15 105.7 9.7 120 64-188 2-145 (395)
81 TIGR03574 selen_PSTK L-seryl-t 99.2 4.8E-10 1E-14 94.8 13.5 109 65-189 1-118 (249)
82 cd00227 CPT Chloramphenicol (C 99.2 9.6E-10 2.1E-14 88.1 13.4 120 63-189 2-133 (175)
83 PRK13951 bifunctional shikimat 99.1 4E-10 8.6E-15 103.9 11.9 133 64-222 1-137 (488)
84 cd01673 dNK Deoxyribonucleosid 99.1 7.8E-10 1.7E-14 89.7 11.9 119 65-189 1-147 (193)
85 smart00072 GuKc Guanylate kina 99.1 1.6E-10 3.4E-15 93.5 7.6 135 63-223 2-153 (184)
86 COG0194 Gmk Guanylate kinase [ 99.1 6.8E-10 1.5E-14 88.9 10.7 136 62-225 3-155 (191)
87 PRK09825 idnK D-gluconate kina 99.1 1.7E-09 3.7E-14 87.0 13.2 118 63-191 3-123 (176)
88 PRK05541 adenylylsulfate kinas 99.1 1.2E-09 2.7E-14 87.4 12.4 111 61-186 5-121 (176)
89 PF01202 SKI: Shikimate kinase 99.1 4.2E-10 9.2E-15 88.8 8.4 135 72-228 1-139 (158)
90 KOG3354 Gluconate kinase [Carb 99.1 1.1E-09 2.3E-14 85.1 9.8 118 63-191 12-142 (191)
91 KOG3220 Similar to bacterial d 99.1 3.7E-09 8.1E-14 85.4 13.1 120 64-189 2-148 (225)
92 PF13238 AAA_18: AAA domain; P 99.1 1.8E-10 3.9E-15 86.6 4.7 114 66-191 1-116 (129)
93 PRK10078 ribose 1,5-bisphospho 99.1 1.3E-09 2.8E-14 88.2 10.0 118 63-189 2-133 (186)
94 cd02030 NDUO42 NADH:Ubiquinone 99.0 6.1E-09 1.3E-13 86.6 13.5 125 65-189 1-165 (219)
95 PRK11545 gntK gluconate kinase 99.0 4.8E-09 1E-13 83.3 11.2 110 69-189 1-113 (163)
96 TIGR01663 PNK-3'Pase polynucle 99.0 8.3E-09 1.8E-13 95.6 14.2 100 61-189 367-470 (526)
97 COG3265 GntK Gluconate kinase 99.0 3E-09 6.5E-14 82.0 9.3 112 69-191 1-115 (161)
98 PF02223 Thymidylate_kin: Thym 99.0 2.3E-09 5E-14 86.5 9.0 114 68-189 1-141 (186)
99 COG0645 Predicted kinase [Gene 99.0 2.1E-08 4.6E-13 79.1 13.9 120 64-191 2-128 (170)
100 PRK07933 thymidylate kinase; V 98.9 1.1E-08 2.3E-13 84.8 11.3 117 64-189 1-155 (213)
101 PRK05480 uridine/cytidine kina 98.9 8.1E-09 1.8E-13 84.9 10.5 123 61-189 4-148 (209)
102 COG4088 Predicted nucleotide k 98.9 3E-08 6.6E-13 80.7 13.0 112 64-189 2-124 (261)
103 PRK00300 gmk guanylate kinase; 98.9 3.3E-08 7.1E-13 80.9 13.1 137 62-224 4-156 (205)
104 TIGR03263 guanyl_kin guanylate 98.9 9.3E-09 2E-13 82.3 9.5 135 63-223 1-151 (180)
105 KOG3327 Thymidylate kinase/ade 98.9 1.2E-08 2.7E-13 81.3 9.8 120 61-188 3-145 (208)
106 TIGR00017 cmk cytidylate kinas 98.9 2.9E-08 6.2E-13 82.5 12.2 39 63-101 2-40 (217)
107 cd02024 NRK1 Nicotinamide ribo 98.9 7.7E-09 1.7E-13 83.9 8.5 120 65-191 1-155 (187)
108 PRK06696 uridine kinase; Valid 98.9 5.8E-09 1.3E-13 86.8 7.9 39 61-99 20-63 (223)
109 TIGR00235 udk uridine kinase. 98.9 6.5E-09 1.4E-13 85.5 8.1 125 60-189 3-148 (207)
110 TIGR02322 phosphon_PhnN phosph 98.9 3E-08 6.5E-13 79.4 11.7 117 64-189 2-133 (179)
111 COG2019 AdkA Archaeal adenylat 98.9 6.8E-08 1.5E-12 76.1 13.2 115 63-187 4-130 (189)
112 PRK14738 gmk guanylate kinase; 98.9 1.9E-08 4.1E-13 82.9 10.6 120 60-189 10-147 (206)
113 PRK07667 uridine kinase; Provi 98.9 5.6E-09 1.2E-13 85.1 7.1 122 62-188 16-160 (193)
114 PRK14737 gmk guanylate kinase; 98.9 5.2E-08 1.1E-12 79.1 12.5 118 62-189 3-139 (186)
115 cd02027 APSK Adenosine 5'-phos 98.8 4.1E-08 8.9E-13 76.8 11.1 106 66-186 2-116 (149)
116 PRK00889 adenylylsulfate kinas 98.8 5.3E-08 1.1E-12 77.8 11.9 107 62-184 3-117 (175)
117 COG1428 Deoxynucleoside kinase 98.8 2.2E-08 4.8E-13 81.7 9.7 30 63-92 4-33 (216)
118 PRK00023 cmk cytidylate kinase 98.8 7.9E-08 1.7E-12 80.3 12.9 38 63-100 4-41 (225)
119 KOG3877 NADH:ubiquinone oxidor 98.8 1.5E-07 3.3E-12 79.6 14.0 158 59-226 67-273 (393)
120 COG4639 Predicted kinase [Gene 98.8 1E-07 2.2E-12 74.2 11.8 113 63-188 2-118 (168)
121 PRK06526 transposase; Provisio 98.8 8.2E-09 1.8E-13 87.7 6.0 93 2-101 40-141 (254)
122 PRK12338 hypothetical protein; 98.8 1.1E-07 2.4E-12 82.8 12.9 128 62-191 3-154 (319)
123 PRK13477 bifunctional pantoate 98.8 3.3E-08 7.2E-13 91.3 10.0 40 62-101 283-322 (512)
124 PRK08181 transposase; Validate 98.8 3.2E-08 7E-13 84.7 8.5 93 2-101 47-149 (269)
125 TIGR00455 apsK adenylylsulfate 98.8 2.5E-07 5.3E-12 74.6 13.0 105 61-183 16-132 (184)
126 PF06414 Zeta_toxin: Zeta toxi 98.7 4.1E-08 8.9E-13 80.3 8.0 117 61-189 13-143 (199)
127 PF01583 APS_kinase: Adenylyls 98.7 7.9E-08 1.7E-12 75.6 9.2 106 62-184 1-117 (156)
128 PF01591 6PF2K: 6-phosphofruct 98.7 2.5E-07 5.4E-12 77.0 12.5 153 60-228 9-179 (222)
129 PRK12337 2-phosphoglycerate ki 98.7 3.8E-07 8.3E-12 82.9 14.7 125 61-191 253-408 (475)
130 TIGR03575 selen_PSTK_euk L-ser 98.7 2.4E-07 5.3E-12 81.6 13.0 124 66-189 2-177 (340)
131 PRK07429 phosphoribulokinase; 98.7 2E-08 4.4E-13 88.2 6.0 38 61-98 6-46 (327)
132 PRK09183 transposase/IS protei 98.7 2.3E-08 5E-13 85.2 6.0 92 2-100 44-144 (259)
133 PHA03132 thymidine kinase; Pro 98.7 3E-07 6.4E-12 85.8 13.7 128 62-189 256-424 (580)
134 COG0572 Udk Uridine kinase [Nu 98.7 9E-08 1.9E-12 78.9 8.7 126 61-191 6-152 (218)
135 COG0283 Cmk Cytidylate kinase 98.7 4.3E-07 9.3E-12 74.4 12.4 39 63-101 4-42 (222)
136 PF08433 KTI12: Chromatin asso 98.7 4.2E-07 9.1E-12 77.9 12.4 111 64-190 2-122 (270)
137 PRK03846 adenylylsulfate kinas 98.6 3.4E-07 7.4E-12 74.8 10.8 107 58-183 19-138 (198)
138 PF07931 CPT: Chloramphenicol 98.6 3.9E-07 8.4E-12 73.1 10.5 116 63-189 1-132 (174)
139 PTZ00301 uridine kinase; Provi 98.6 5.7E-08 1.2E-12 80.3 5.8 118 64-190 4-150 (210)
140 PLN02348 phosphoribulokinase 98.6 1E-07 2.2E-12 85.0 7.0 28 61-88 47-74 (395)
141 cd02019 NK Nucleoside/nucleoti 98.6 1.3E-07 2.8E-12 64.3 5.7 23 65-87 1-23 (69)
142 PRK15453 phosphoribulokinase; 98.6 1.2E-07 2.6E-12 81.1 6.7 151 61-226 3-196 (290)
143 PRK04220 2-phosphoglycerate ki 98.6 7.4E-07 1.6E-11 77.1 11.5 123 62-191 91-239 (301)
144 PRK05537 bifunctional sulfate 98.6 5.5E-07 1.2E-11 84.7 11.5 109 61-185 390-510 (568)
145 PRK05416 glmZ(sRNA)-inactivati 98.6 1.4E-06 3E-11 75.4 12.8 97 62-187 5-106 (288)
146 PHA00729 NTP-binding motif con 98.5 6.3E-07 1.4E-11 74.6 9.6 110 64-189 18-141 (226)
147 PF00485 PRK: Phosphoribulokin 98.5 4.1E-08 8.9E-13 79.9 2.5 24 65-88 1-24 (194)
148 cd02023 UMPK Uridine monophosp 98.5 8.2E-08 1.8E-12 78.3 4.0 35 65-99 1-38 (198)
149 PRK09518 bifunctional cytidyla 98.5 1E-07 2.2E-12 92.0 5.3 38 64-101 2-39 (712)
150 PRK05439 pantothenate kinase; 98.5 6.6E-07 1.4E-11 78.0 9.5 39 60-98 83-128 (311)
151 PLN02772 guanylate kinase 98.5 2.9E-06 6.3E-11 75.8 13.0 136 62-224 134-287 (398)
152 PRK09270 nucleoside triphospha 98.5 6.3E-07 1.4E-11 74.9 8.4 28 61-88 31-58 (229)
153 PRK11860 bifunctional 3-phosph 98.4 2.9E-06 6.4E-11 81.3 13.0 40 62-101 441-480 (661)
154 cd02026 PRK Phosphoribulokinas 98.4 5.8E-07 1.3E-11 77.2 7.0 34 65-98 1-37 (273)
155 cd02028 UMPK_like Uridine mono 98.4 5.2E-07 1.1E-11 72.7 5.9 36 65-100 1-41 (179)
156 COG0529 CysC Adenylylsulfate k 98.4 3E-06 6.4E-11 67.6 9.1 111 60-185 20-139 (197)
157 cd02025 PanK Pantothenate kina 98.4 2.5E-07 5.3E-12 77.1 3.1 34 65-98 1-41 (220)
158 PRK05506 bifunctional sulfate 98.3 3.3E-06 7.2E-11 80.6 10.8 107 61-184 458-575 (632)
159 PF03668 ATP_bind_2: P-loop AT 98.3 9E-06 2E-10 69.6 12.3 100 64-191 2-107 (284)
160 PF01695 IstB_IS21: IstB-like 98.3 2.6E-07 5.6E-12 74.5 1.7 81 16-102 2-91 (178)
161 TIGR00554 panK_bact pantothena 98.3 2.4E-06 5.2E-11 73.9 7.8 38 61-98 60-104 (290)
162 cd02029 PRK_like Phosphoribulo 98.3 1.2E-06 2.6E-11 74.6 5.6 52 166-227 140-191 (277)
163 PF00625 Guanylate_kin: Guanyl 98.3 4.4E-06 9.5E-11 67.3 8.7 138 63-226 2-156 (183)
164 PLN02165 adenylate isopentenyl 98.3 5.6E-06 1.2E-10 72.7 9.3 37 61-97 41-77 (334)
165 COG1484 DnaC DNA replication p 98.2 2.8E-06 6.2E-11 72.2 6.5 90 6-102 50-149 (254)
166 PRK09169 hypothetical protein; 98.1 2.1E-05 4.6E-10 81.7 10.8 146 64-229 2111-2262(2316)
167 COG2074 2-phosphoglycerate kin 98.1 2.1E-05 4.5E-10 66.1 8.7 42 61-102 87-128 (299)
168 PF00004 AAA: ATPase family as 98.0 3.3E-06 7.2E-11 63.4 2.6 29 66-94 1-29 (132)
169 PTZ00322 6-phosphofructo-2-kin 98.0 2.9E-05 6.2E-10 74.6 9.5 33 62-94 214-246 (664)
170 TIGR02881 spore_V_K stage V sp 98.0 3.8E-05 8.3E-10 65.4 9.2 27 61-87 40-66 (261)
171 PRK05800 cobU adenosylcobinami 98.0 4E-06 8.6E-11 67.1 2.9 33 64-96 2-36 (170)
172 PRK06761 hypothetical protein; 98.0 2.9E-05 6.2E-10 66.9 7.8 33 63-95 3-35 (282)
173 PHA03136 thymidine kinase; Pro 97.9 0.00032 6.9E-09 62.4 14.1 25 166-190 191-215 (378)
174 COG1072 CoaA Panthothenate kin 97.9 1.8E-05 3.8E-10 67.3 6.0 28 60-87 79-106 (283)
175 KOG3308 Uncharacterized protei 97.9 3.3E-05 7.1E-10 62.8 7.1 124 62-191 3-152 (225)
176 CHL00195 ycf46 Ycf46; Provisio 97.9 0.0001 2.2E-09 68.2 10.5 33 62-94 258-290 (489)
177 PRK12269 bifunctional cytidyla 97.9 1.8E-05 4E-10 77.5 5.3 40 62-101 33-72 (863)
178 CHL00181 cbbX CbbX; Provisiona 97.8 6.6E-05 1.4E-09 65.0 7.8 41 61-101 57-106 (287)
179 PRK00091 miaA tRNA delta(2)-is 97.8 1.5E-05 3.3E-10 69.5 3.9 36 62-97 3-38 (307)
180 KOG0733 Nuclear AAA ATPase (VC 97.8 6E-05 1.3E-09 70.3 7.7 124 57-185 219-370 (802)
181 PRK12724 flagellar biosynthesi 97.8 0.00017 3.7E-09 65.3 10.2 105 62-177 222-344 (432)
182 PF08303 tRNA_lig_kinase: tRNA 97.8 0.00059 1.3E-08 54.0 11.9 127 66-227 2-149 (168)
183 PLN02318 phosphoribulokinase/u 97.8 5.3E-05 1.2E-09 71.0 7.0 36 62-97 64-100 (656)
184 PF01745 IPT: Isopentenyl tran 97.8 5.6E-05 1.2E-09 62.2 6.2 121 64-187 2-138 (233)
185 PF13189 Cytidylate_kin2: Cyti 97.8 0.00026 5.6E-09 56.9 10.0 116 65-188 1-135 (179)
186 cd00071 GMPK Guanosine monopho 97.8 0.00012 2.5E-09 56.4 7.4 23 66-88 2-24 (137)
187 COG1618 Predicted nucleotide k 97.8 2.7E-05 5.9E-10 61.2 3.7 30 61-90 3-32 (179)
188 PF13401 AAA_22: AAA domain; P 97.7 0.00011 2.5E-09 55.1 6.7 85 62-152 3-97 (131)
189 smart00382 AAA ATPases associa 97.7 3.2E-05 6.9E-10 57.5 3.4 28 63-90 2-29 (148)
190 TIGR00390 hslU ATP-dependent p 97.7 3.5E-05 7.5E-10 69.6 4.0 35 62-96 46-80 (441)
191 PRK05201 hslU ATP-dependent pr 97.7 4.8E-05 1E-09 68.8 4.9 35 62-96 49-83 (443)
192 TIGR02640 gas_vesic_GvpN gas v 97.7 9.8E-05 2.1E-09 63.0 6.6 30 63-92 21-50 (262)
193 KOG0730 AAA+-type ATPase [Post 97.7 0.00042 9.1E-09 65.2 10.8 42 61-102 466-509 (693)
194 PF13521 AAA_28: AAA domain; P 97.7 2.1E-05 4.6E-10 61.9 2.0 27 65-92 1-27 (163)
195 COG4185 Uncharacterized protei 97.7 0.00069 1.5E-08 53.4 10.3 112 63-189 2-119 (187)
196 PLN02840 tRNA dimethylallyltra 97.7 4.6E-05 9.9E-10 68.9 4.2 36 61-96 19-54 (421)
197 COG3709 Uncharacterized compon 97.7 0.00059 1.3E-08 53.8 9.7 27 62-88 4-30 (192)
198 COG1660 Predicted P-loop-conta 97.6 0.0009 2E-08 56.5 11.2 100 64-191 2-108 (286)
199 PF05496 RuvB_N: Holliday junc 97.6 4.6E-05 1E-09 63.3 3.3 30 63-92 50-79 (233)
200 PF05729 NACHT: NACHT domain 97.6 8.6E-05 1.9E-09 57.7 4.2 23 65-87 2-24 (166)
201 KOG0744 AAA+-type ATPase [Post 97.6 5.4E-05 1.2E-09 65.8 3.2 29 62-90 176-204 (423)
202 TIGR00174 miaA tRNA isopenteny 97.6 5.2E-05 1.1E-09 65.5 3.0 32 65-96 1-32 (287)
203 TIGR02880 cbbX_cfxQ probable R 97.6 0.00029 6.4E-09 60.8 7.6 26 62-87 57-82 (284)
204 PF07728 AAA_5: AAA domain (dy 97.5 5.5E-05 1.2E-09 57.9 2.7 27 66-92 2-28 (139)
205 PLN02748 tRNA dimethylallyltra 97.5 7.5E-05 1.6E-09 68.6 3.7 36 61-96 20-55 (468)
206 PRK09087 hypothetical protein; 97.5 0.00073 1.6E-08 56.5 8.8 119 63-188 44-165 (226)
207 PHA02575 1 deoxynucleoside mon 97.5 0.00011 2.5E-09 60.9 3.8 39 64-103 1-40 (227)
208 smart00763 AAA_PrkA PrkA AAA d 97.5 9E-05 2E-09 65.7 3.5 28 62-89 77-104 (361)
209 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00018 3.9E-09 55.2 4.1 30 61-90 20-49 (133)
210 PRK12377 putative replication 97.4 0.00042 9E-09 58.8 6.7 38 63-100 101-143 (248)
211 KOG0731 AAA+-type ATPase conta 97.4 0.0012 2.6E-08 63.6 10.1 37 65-101 346-384 (774)
212 PRK06620 hypothetical protein; 97.4 0.0006 1.3E-08 56.5 7.1 30 64-93 45-74 (214)
213 cd00009 AAA The AAA+ (ATPases 97.4 0.00018 4E-09 53.9 3.6 25 63-87 19-43 (151)
214 PLN00020 ribulose bisphosphate 97.4 0.00016 3.4E-09 64.4 3.6 41 61-101 146-188 (413)
215 TIGR01650 PD_CobS cobaltochela 97.4 0.00014 2.9E-09 63.9 3.2 31 63-93 64-94 (327)
216 PRK06893 DNA replication initi 97.4 0.00035 7.5E-09 58.4 5.5 33 63-95 39-76 (229)
217 PRK00771 signal recognition pa 97.4 0.0012 2.6E-08 60.4 9.3 27 61-87 93-119 (437)
218 PF13173 AAA_14: AAA domain 97.4 0.00018 4E-09 54.4 3.5 97 63-183 2-104 (128)
219 TIGR03689 pup_AAA proteasome A 97.3 0.0019 4.2E-08 60.1 10.5 29 62-90 215-243 (512)
220 KOG0733 Nuclear AAA ATPase (VC 97.3 0.0015 3.3E-08 61.2 9.5 41 63-103 545-587 (802)
221 PRK05342 clpX ATP-dependent pr 97.3 0.0002 4.3E-09 65.0 3.7 33 63-95 108-140 (412)
222 PRK06921 hypothetical protein; 97.3 0.0003 6.6E-09 60.2 4.7 39 62-100 116-160 (266)
223 PRK03992 proteasome-activating 97.3 0.00021 4.4E-09 64.5 3.8 39 62-100 164-204 (389)
224 PF03266 NTPase_1: NTPase; In 97.3 0.00019 4E-09 57.3 3.1 23 65-87 1-23 (168)
225 PRK06835 DNA replication prote 97.3 0.00061 1.3E-08 60.1 6.6 39 63-101 183-226 (329)
226 PRK08116 hypothetical protein; 97.3 0.00055 1.2E-08 58.7 6.0 38 63-100 114-156 (268)
227 PRK08099 bifunctional DNA-bind 97.3 0.00027 5.9E-09 63.9 4.1 31 62-92 218-248 (399)
228 TIGR01425 SRP54_euk signal rec 97.3 0.0019 4.2E-08 58.8 9.5 26 62-87 99-124 (429)
229 PRK14974 cell division protein 97.3 0.00062 1.3E-08 60.2 6.2 27 61-87 138-164 (336)
230 COG0324 MiaA tRNA delta(2)-iso 97.2 0.00029 6.3E-09 61.3 3.9 36 62-97 2-37 (308)
231 CHL00176 ftsH cell division pr 97.2 0.0036 7.8E-08 59.9 11.5 32 63-94 216-247 (638)
232 PF06745 KaiC: KaiC; InterPro 97.2 0.00034 7.3E-09 58.0 4.1 88 61-151 17-124 (226)
233 COG0466 Lon ATP-dependent Lon 97.2 0.00023 4.9E-09 67.6 3.2 34 61-94 348-381 (782)
234 PRK14086 dnaA chromosomal repl 97.2 0.00089 1.9E-08 63.4 7.1 36 66-101 317-359 (617)
235 PHA02244 ATPase-like protein 97.2 0.00016 3.5E-09 64.4 2.1 38 61-98 117-154 (383)
236 COG2256 MGS1 ATPase related to 97.2 0.00023 4.9E-09 63.5 2.9 31 64-94 49-79 (436)
237 TIGR01242 26Sp45 26S proteasom 97.2 0.00036 7.8E-09 62.3 4.2 33 62-94 155-187 (364)
238 PTZ00454 26S protease regulato 97.2 0.00035 7.6E-09 63.2 4.0 33 62-94 178-210 (398)
239 TIGR01241 FtsH_fam ATP-depende 97.2 0.00034 7.5E-09 65.0 4.0 33 62-94 87-119 (495)
240 TIGR01243 CDC48 AAA family ATP 97.2 0.003 6.5E-08 61.5 10.6 38 63-100 487-526 (733)
241 TIGR00382 clpX endopeptidase C 97.2 0.00031 6.7E-09 63.7 3.4 32 63-94 116-147 (413)
242 TIGR00635 ruvB Holliday juncti 97.2 0.00041 8.9E-09 60.1 4.1 29 62-90 29-57 (305)
243 PF00448 SRP54: SRP54-type pro 97.2 0.0004 8.7E-09 56.8 3.7 25 63-87 1-25 (196)
244 COG1222 RPT1 ATP-dependent 26S 97.1 0.00067 1.4E-08 59.8 4.9 46 62-107 184-231 (406)
245 KOG3062 RNA polymerase II elon 97.1 0.0042 9.1E-08 51.6 9.3 112 64-188 2-123 (281)
246 TIGR01526 nadR_NMN_Atrans nico 97.1 0.00043 9.3E-09 61.0 3.8 30 63-92 162-191 (325)
247 PLN02796 D-glycerate 3-kinase 97.1 0.00033 7.2E-09 61.9 3.0 37 62-98 99-140 (347)
248 PF13245 AAA_19: Part of AAA d 97.1 0.00054 1.2E-08 47.3 3.5 23 63-85 10-33 (76)
249 PRK00149 dnaA chromosomal repl 97.1 0.0021 4.4E-08 59.1 8.2 36 65-100 150-192 (450)
250 PF00910 RNA_helicase: RNA hel 97.1 0.00038 8.3E-09 51.1 2.7 22 66-87 1-22 (107)
251 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.00042 9.2E-09 57.2 3.3 38 61-98 36-78 (226)
252 TIGR00959 ffh signal recogniti 97.1 0.00095 2.1E-08 60.9 5.7 35 61-95 97-137 (428)
253 COG2255 RuvB Holliday junction 97.1 0.00051 1.1E-08 58.9 3.6 27 64-90 53-79 (332)
254 KOG4235 Mitochondrial thymidin 97.1 0.0036 7.8E-08 50.9 8.2 28 165-192 152-179 (244)
255 TIGR02655 circ_KaiC circadian 97.1 0.00045 9.7E-09 64.1 3.5 90 59-152 259-363 (484)
256 PRK08903 DnaA regulatory inact 97.1 0.0006 1.3E-08 56.6 3.9 37 62-98 41-82 (227)
257 PRK08939 primosomal protein Dn 97.1 0.0018 3.8E-08 56.6 6.9 40 62-101 155-199 (306)
258 PF03029 ATP_bind_1: Conserved 97.1 0.00036 7.8E-09 58.8 2.5 21 68-88 1-21 (238)
259 PF07726 AAA_3: ATPase family 97.0 0.00029 6.3E-09 53.6 1.7 27 66-92 2-28 (131)
260 PF00308 Bac_DnaA: Bacterial d 97.0 0.0013 2.9E-08 54.6 5.7 118 65-187 36-177 (219)
261 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0012 2.5E-08 55.5 5.4 35 61-95 19-58 (237)
262 PRK05973 replicative DNA helic 97.0 0.00083 1.8E-08 56.5 4.5 58 37-95 39-101 (237)
263 PTZ00361 26 proteosome regulat 97.0 0.00062 1.4E-08 62.2 4.0 33 62-94 216-248 (438)
264 KOG0735 AAA+-type ATPase [Post 97.0 0.0037 8.1E-08 59.6 9.1 41 63-103 701-743 (952)
265 PRK14088 dnaA chromosomal repl 97.0 0.0024 5.1E-08 58.6 7.8 37 65-101 132-175 (440)
266 TIGR03015 pepcterm_ATPase puta 97.0 0.0012 2.7E-08 55.8 5.6 27 62-88 42-68 (269)
267 COG1219 ClpX ATP-dependent pro 97.0 0.00057 1.2E-08 59.4 3.4 32 64-95 98-129 (408)
268 PRK07952 DNA replication prote 97.0 0.0015 3.3E-08 55.2 6.0 37 64-100 100-141 (244)
269 PRK00080 ruvB Holliday junctio 97.0 0.00062 1.3E-08 59.9 3.7 30 62-91 50-79 (328)
270 TIGR00362 DnaA chromosomal rep 97.0 0.0038 8.2E-08 56.5 8.9 37 64-100 137-180 (405)
271 COG1223 Predicted ATPase (AAA+ 97.0 0.00046 1E-08 58.6 2.7 46 55-102 145-192 (368)
272 PF02367 UPF0079: Uncharacteri 97.0 0.00086 1.9E-08 50.7 3.9 30 61-90 13-42 (123)
273 KOG2004 Mitochondrial ATP-depe 97.0 0.00046 9.9E-09 65.6 2.9 36 61-96 436-473 (906)
274 PRK06067 flagellar accessory p 97.0 0.0011 2.4E-08 55.3 5.1 36 60-95 22-62 (234)
275 COG0465 HflB ATP-dependent Zn 97.0 0.0065 1.4E-07 57.3 10.5 122 62-186 182-330 (596)
276 PRK04328 hypothetical protein; 97.0 0.0012 2.6E-08 55.9 5.2 35 61-95 21-60 (249)
277 PRK04195 replication factor C 97.0 0.00066 1.4E-08 62.9 3.8 32 63-94 39-70 (482)
278 PRK13342 recombination factor 97.0 0.00065 1.4E-08 61.7 3.6 33 62-94 35-67 (413)
279 COG1220 HslU ATP-dependent pro 97.0 0.00072 1.6E-08 59.3 3.5 33 62-94 49-81 (444)
280 KOG1533 Predicted GTPase [Gene 97.0 0.00042 9E-09 57.8 2.0 22 66-87 5-26 (290)
281 PRK08084 DNA replication initi 96.9 0.00064 1.4E-08 57.0 3.1 34 63-96 45-83 (235)
282 CHL00206 ycf2 Ycf2; Provisiona 96.9 0.00067 1.5E-08 70.6 3.7 37 63-99 1630-1668(2281)
283 PF07724 AAA_2: AAA domain (Cd 96.9 0.0007 1.5E-08 54.2 3.1 26 64-89 4-29 (171)
284 PF08477 Miro: Miro-like prote 96.9 0.00086 1.9E-08 49.4 3.4 23 65-87 1-23 (119)
285 PRK08533 flagellar accessory p 96.9 0.0011 2.5E-08 55.4 4.4 25 61-85 22-46 (230)
286 KOG0736 Peroxisome assembly fa 96.9 0.007 1.5E-07 58.2 10.0 61 43-103 685-747 (953)
287 PF03308 ArgK: ArgK protein; 96.9 0.00089 1.9E-08 56.8 3.7 27 61-87 27-53 (266)
288 PF03215 Rad17: Rad17 cell cyc 96.9 0.00082 1.8E-08 62.7 3.8 30 63-92 45-74 (519)
289 PRK14729 miaA tRNA delta(2)-is 96.9 0.00095 2E-08 58.1 3.8 34 63-97 4-37 (300)
290 PF10662 PduV-EutP: Ethanolami 96.9 0.00086 1.9E-08 52.0 3.0 22 64-85 2-23 (143)
291 KOG0739 AAA+-type ATPase [Post 96.9 0.0017 3.7E-08 56.2 5.0 40 65-104 168-209 (439)
292 PRK12402 replication factor C 96.9 0.0011 2.4E-08 58.0 4.0 35 64-98 37-78 (337)
293 PLN03046 D-glycerate 3-kinase; 96.9 0.00071 1.5E-08 61.3 2.7 38 61-98 210-252 (460)
294 KOG0737 AAA+-type ATPase [Post 96.8 0.00079 1.7E-08 59.4 2.9 34 62-95 126-159 (386)
295 cd03115 SRP The signal recogni 96.8 0.0011 2.4E-08 52.6 3.5 31 65-95 2-37 (173)
296 COG1126 GlnQ ABC-type polar am 96.8 0.001 2.3E-08 54.9 3.3 24 61-84 26-49 (240)
297 COG3896 Chloramphenicol 3-O-ph 96.8 0.016 3.4E-07 45.8 9.5 126 61-188 21-161 (205)
298 PF06309 Torsin: Torsin; Inte 96.8 0.0019 4.1E-08 49.0 4.3 30 58-87 48-77 (127)
299 TIGR00064 ftsY signal recognit 96.8 0.0014 3E-08 56.4 4.0 27 61-87 70-96 (272)
300 PRK09435 membrane ATPase/prote 96.8 0.0013 2.8E-08 58.0 4.0 27 61-87 54-80 (332)
301 COG0464 SpoVK ATPases of the A 96.8 0.00097 2.1E-08 61.9 3.3 34 62-95 275-308 (494)
302 KOG0635 Adenosine 5'-phosphosu 96.8 0.0049 1.1E-07 48.2 6.5 27 61-87 29-55 (207)
303 cd01120 RecA-like_NTPases RecA 96.8 0.001 2.3E-08 51.1 2.9 22 66-87 2-23 (165)
304 KOG1532 GTPase XAB1, interacts 96.8 0.0054 1.2E-07 52.5 7.1 45 57-101 13-62 (366)
305 COG0541 Ffh Signal recognition 96.8 0.0023 4.9E-08 57.8 5.2 28 60-87 97-124 (451)
306 PHA03135 thymidine kinase; Pro 96.8 0.046 1E-06 48.2 13.2 26 61-86 8-33 (343)
307 PRK07003 DNA polymerase III su 96.8 0.0092 2E-07 57.8 9.5 28 63-90 38-65 (830)
308 TIGR03499 FlhF flagellar biosy 96.8 0.0017 3.7E-08 56.0 4.3 28 60-87 191-218 (282)
309 PRK14962 DNA polymerase III su 96.7 0.0014 3E-08 60.6 3.9 28 63-90 36-63 (472)
310 TIGR03707 PPK2_P_aer polyphosp 96.7 0.039 8.4E-07 46.3 12.1 33 62-94 30-62 (230)
311 COG1855 ATPase (PilT family) [ 96.7 0.0011 2.5E-08 60.0 3.1 23 65-87 265-287 (604)
312 PF06068 TIP49: TIP49 C-termin 96.7 0.0012 2.6E-08 58.7 3.2 33 62-94 49-83 (398)
313 PRK10416 signal recognition pa 96.7 0.0016 3.4E-08 57.3 3.9 27 61-87 112-138 (318)
314 cd00544 CobU Adenosylcobinamid 96.7 0.0014 3E-08 52.4 3.3 29 66-94 2-32 (169)
315 PRK15455 PrkA family serine pr 96.7 0.0013 2.8E-08 61.8 3.5 26 62-87 102-127 (644)
316 TIGR00763 lon ATP-dependent pr 96.7 0.0012 2.7E-08 64.6 3.6 32 62-93 346-377 (775)
317 PHA03134 thymidine kinase; Pro 96.7 0.19 4.1E-06 44.4 16.7 127 62-189 12-186 (340)
318 PRK14961 DNA polymerase III su 96.7 0.0017 3.6E-08 58.1 4.0 28 63-90 38-65 (363)
319 COG3911 Predicted ATPase [Gene 96.7 0.0017 3.6E-08 50.7 3.4 25 61-85 7-31 (183)
320 PRK14722 flhF flagellar biosyn 96.7 0.0016 3.5E-08 58.3 3.9 29 59-87 133-161 (374)
321 TIGR00101 ureG urease accessor 96.7 0.0017 3.8E-08 53.1 3.8 25 63-87 1-25 (199)
322 PF13191 AAA_16: AAA ATPase do 96.7 0.0014 2.9E-08 52.0 3.1 27 61-87 22-48 (185)
323 PLN03025 replication factor C 96.7 0.0016 3.5E-08 57.0 3.8 26 63-88 34-59 (319)
324 cd01131 PilT Pilus retraction 96.7 0.0016 3.4E-08 53.2 3.5 24 65-88 3-26 (198)
325 PRK10751 molybdopterin-guanine 96.7 0.0017 3.8E-08 52.0 3.6 27 62-88 5-31 (173)
326 cd00820 PEPCK_HprK Phosphoenol 96.7 0.0018 3.9E-08 47.7 3.4 23 62-84 14-36 (107)
327 KOG0743 AAA+-type ATPase [Post 96.7 0.0011 2.4E-08 59.9 2.6 29 66-94 238-266 (457)
328 PHA03133 thymidine kinase; Pro 96.7 0.051 1.1E-06 48.2 12.8 27 62-88 39-65 (368)
329 cd04163 Era Era subfamily. Er 96.7 0.0016 3.6E-08 49.8 3.2 24 63-86 3-26 (168)
330 PRK13695 putative NTPase; Prov 96.7 0.0018 3.8E-08 51.6 3.5 24 64-87 1-24 (174)
331 PTZ00202 tuzin; Provisional 96.7 0.021 4.6E-07 52.3 10.6 29 62-90 285-313 (550)
332 COG5192 BMS1 GTP-binding prote 96.7 0.0016 3.4E-08 60.6 3.5 64 22-87 29-93 (1077)
333 PRK13768 GTPase; Provisional 96.6 0.0019 4E-08 54.9 3.7 25 63-87 2-26 (253)
334 KOG0707 Guanylate kinase [Nucl 96.6 0.048 1E-06 45.4 11.8 31 64-94 38-69 (231)
335 COG1703 ArgK Putative periplas 96.6 0.0018 4E-08 55.8 3.5 27 61-87 49-75 (323)
336 TIGR02237 recomb_radB DNA repa 96.6 0.0028 6E-08 51.8 4.4 37 59-95 8-49 (209)
337 TIGR01243 CDC48 AAA family ATP 96.6 0.0017 3.7E-08 63.3 3.6 33 62-94 211-243 (733)
338 KOG0651 26S proteasome regulat 96.6 0.0043 9.4E-08 53.9 5.6 44 59-102 162-207 (388)
339 PF01926 MMR_HSR1: 50S ribosom 96.6 0.0019 4.1E-08 47.6 3.1 21 65-85 1-21 (116)
340 PF01078 Mg_chelatase: Magnesi 96.6 0.0017 3.6E-08 53.4 3.0 25 63-87 22-46 (206)
341 PRK11034 clpA ATP-dependent Cl 96.6 0.0019 4.2E-08 62.9 3.9 32 62-93 486-518 (758)
342 TIGR02655 circ_KaiC circadian 96.6 0.0039 8.4E-08 57.9 5.6 36 60-95 18-59 (484)
343 PRK06645 DNA polymerase III su 96.6 0.0022 4.7E-08 59.8 3.9 29 63-91 43-71 (507)
344 cd01394 radB RadB. The archaea 96.6 0.003 6.5E-08 52.0 4.4 36 60-95 16-56 (218)
345 cd01130 VirB11-like_ATPase Typ 96.6 0.0023 4.9E-08 51.7 3.5 26 62-87 24-49 (186)
346 PRK14956 DNA polymerase III su 96.6 0.0022 4.8E-08 59.1 3.8 28 63-90 40-67 (484)
347 cd04155 Arl3 Arl3 subfamily. 96.6 0.0022 4.7E-08 50.3 3.3 25 62-86 13-37 (173)
348 TIGR01223 Pmev_kin_anim phosph 96.5 0.022 4.8E-07 45.6 8.9 114 65-187 1-135 (182)
349 KOG2702 Predicted panthothenat 96.5 0.0049 1.1E-07 51.5 5.3 30 61-90 117-146 (323)
350 COG4240 Predicted kinase [Gene 96.5 0.0021 4.5E-08 53.6 3.1 39 61-99 48-92 (300)
351 PRK10646 ADP-binding protein; 96.5 0.0033 7.2E-08 49.3 4.1 30 61-90 26-55 (153)
352 COG0714 MoxR-like ATPases [Gen 96.5 0.0021 4.6E-08 56.5 3.4 32 62-93 42-73 (329)
353 KOG1969 DNA replication checkp 96.5 0.0024 5.1E-08 61.0 3.8 44 51-94 314-357 (877)
354 KOG0738 AAA+-type ATPase [Post 96.5 0.0018 3.8E-08 57.8 2.8 30 65-94 247-276 (491)
355 PRK13341 recombination factor 96.5 0.0027 5.8E-08 61.6 4.3 34 62-95 51-84 (725)
356 PF03205 MobB: Molybdopterin g 96.5 0.0027 5.8E-08 49.1 3.4 24 64-87 1-24 (140)
357 PRK04296 thymidine kinase; Pro 96.5 0.0026 5.7E-08 51.6 3.5 25 63-87 2-26 (190)
358 PHA02624 large T antigen; Prov 96.5 0.0027 5.9E-08 59.8 4.0 34 61-94 429-462 (647)
359 PRK10787 DNA-binding ATP-depen 96.5 0.0022 4.7E-08 62.8 3.5 33 62-94 348-380 (784)
360 PRK14490 putative bifunctional 96.5 0.0029 6.4E-08 56.6 4.1 29 60-88 2-30 (369)
361 PF00005 ABC_tran: ABC transpo 96.5 0.0021 4.6E-08 48.6 2.8 26 62-87 10-35 (137)
362 PRK05642 DNA replication initi 96.5 0.0025 5.4E-08 53.5 3.4 36 64-99 46-86 (234)
363 TIGR00750 lao LAO/AO transport 96.5 0.003 6.5E-08 55.0 3.9 27 61-87 32-58 (300)
364 COG4619 ABC-type uncharacteriz 96.5 0.0028 6E-08 50.7 3.3 26 61-86 27-52 (223)
365 PRK11331 5-methylcytosine-spec 96.5 0.0024 5.3E-08 58.3 3.3 27 62-88 193-219 (459)
366 PF13555 AAA_29: P-loop contai 96.4 0.0037 8.1E-08 41.4 3.3 24 62-85 22-45 (62)
367 COG1224 TIP49 DNA helicase TIP 96.4 0.0023 4.9E-08 56.6 2.9 33 62-94 64-98 (450)
368 PRK10867 signal recognition pa 96.4 0.0031 6.8E-08 57.6 4.0 35 61-95 98-138 (433)
369 PHA02544 44 clamp loader, smal 96.4 0.0029 6.2E-08 55.1 3.6 29 63-91 43-71 (316)
370 PRK14963 DNA polymerase III su 96.4 0.0028 6E-08 59.1 3.6 28 62-89 35-62 (504)
371 TIGR02639 ClpA ATP-dependent C 96.4 0.0026 5.7E-08 61.9 3.6 38 61-98 481-521 (731)
372 cd01128 rho_factor Transcripti 96.4 0.0034 7.4E-08 53.2 3.9 30 60-89 13-42 (249)
373 KOG1970 Checkpoint RAD17-RFC c 96.4 0.0028 6.2E-08 58.7 3.5 31 62-92 109-139 (634)
374 cd03292 ABC_FtsE_transporter F 96.4 0.0031 6.6E-08 51.7 3.4 27 61-87 25-51 (214)
375 PRK09302 circadian clock prote 96.4 0.0042 9.1E-08 57.9 4.7 36 60-95 270-310 (509)
376 TIGR01166 cbiO cobalt transpor 96.4 0.0032 6.9E-08 50.7 3.4 27 61-87 16-42 (190)
377 cd01124 KaiC KaiC is a circadi 96.4 0.003 6.5E-08 50.4 3.2 30 66-95 2-36 (187)
378 cd03116 MobB Molybdenum is an 96.4 0.0038 8.3E-08 49.3 3.7 24 64-87 2-25 (159)
379 PRK14964 DNA polymerase III su 96.4 0.0033 7.2E-08 58.3 3.8 28 63-90 35-62 (491)
380 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.4 0.0032 7E-08 51.8 3.4 27 61-87 28-54 (218)
381 COG1136 SalX ABC-type antimicr 96.4 0.0033 7.2E-08 52.4 3.4 25 61-85 29-53 (226)
382 PHA03138 thymidine kinase; Pro 96.4 0.029 6.2E-07 49.5 9.3 27 61-87 10-36 (340)
383 PF06564 YhjQ: YhjQ protein; 96.3 0.12 2.7E-06 43.6 12.8 41 63-103 1-49 (243)
384 TIGR03708 poly_P_AMP_trns poly 96.3 0.072 1.6E-06 49.5 12.3 32 61-92 38-69 (493)
385 TIGR03880 KaiC_arch_3 KaiC dom 96.3 0.005 1.1E-07 51.0 4.4 35 61-95 14-53 (224)
386 cd03301 ABC_MalK_N The N-termi 96.3 0.0036 7.8E-08 51.3 3.5 27 61-87 24-50 (213)
387 PRK14949 DNA polymerase III su 96.3 0.0034 7.4E-08 61.7 3.8 28 63-90 38-65 (944)
388 COG0802 Predicted ATPase or ki 96.3 0.0049 1.1E-07 48.0 3.9 29 61-89 23-51 (149)
389 TIGR00960 3a0501s02 Type II (G 96.3 0.0035 7.6E-08 51.5 3.4 27 61-87 27-53 (216)
390 PRK14960 DNA polymerase III su 96.3 0.0039 8.5E-08 59.5 4.1 28 63-90 37-64 (702)
391 PRK14957 DNA polymerase III su 96.3 0.0037 8E-08 58.7 3.9 27 63-89 38-64 (546)
392 smart00173 RAS Ras subfamily o 96.3 0.0036 7.7E-08 48.6 3.2 21 65-85 2-22 (164)
393 PRK12323 DNA polymerase III su 96.3 0.04 8.6E-07 52.8 10.7 28 62-89 37-64 (700)
394 PRK14955 DNA polymerase III su 96.3 0.0037 8.1E-08 56.5 3.8 28 63-90 38-65 (397)
395 cd04138 H_N_K_Ras_like H-Ras/N 96.3 0.0038 8.2E-08 48.0 3.3 22 64-85 2-23 (162)
396 TIGR02673 FtsE cell division A 96.3 0.0037 8E-08 51.2 3.4 27 61-87 26-52 (214)
397 PF13479 AAA_24: AAA domain 96.3 0.0028 6E-08 52.3 2.6 22 62-83 2-23 (213)
398 cd04119 RJL RJL (RabJ-Like) su 96.3 0.0036 7.9E-08 48.4 3.2 22 65-86 2-23 (168)
399 PRK12723 flagellar biosynthesi 96.3 0.0042 9E-08 56.0 3.9 26 62-87 173-198 (388)
400 cd03225 ABC_cobalt_CbiO_domain 96.3 0.0039 8.4E-08 51.0 3.5 27 61-87 25-51 (211)
401 COG1124 DppF ABC-type dipeptid 96.3 0.0039 8.4E-08 52.3 3.3 25 61-85 31-55 (252)
402 COG3839 MalK ABC-type sugar tr 96.3 0.0037 7.9E-08 55.2 3.4 25 61-85 27-51 (338)
403 cd03262 ABC_HisP_GlnQ_permease 96.3 0.004 8.6E-08 51.0 3.4 27 61-87 24-50 (213)
404 PRK07940 DNA polymerase III su 96.3 0.052 1.1E-06 49.2 10.9 29 62-90 35-63 (394)
405 KOG0991 Replication factor C, 96.3 0.0037 8E-08 52.4 3.2 27 61-87 46-72 (333)
406 TIGR03608 L_ocin_972_ABC putat 96.3 0.0039 8.4E-08 50.8 3.4 27 61-87 22-48 (206)
407 cd03224 ABC_TM1139_LivF_branch 96.3 0.004 8.6E-08 51.3 3.4 27 61-87 24-50 (222)
408 PRK14958 DNA polymerase III su 96.3 0.004 8.7E-08 58.1 3.8 28 63-90 38-65 (509)
409 cd01983 Fer4_NifH The Fer4_Nif 96.3 0.0041 9E-08 43.4 3.1 22 66-87 2-23 (99)
410 PRK07764 DNA polymerase III su 96.3 0.025 5.4E-07 55.8 9.4 28 63-90 37-64 (824)
411 cd03261 ABC_Org_Solvent_Resist 96.3 0.004 8.6E-08 51.9 3.4 27 61-87 24-50 (235)
412 cd01918 HprK_C HprK/P, the bif 96.3 0.0045 9.8E-08 48.4 3.5 30 63-93 14-43 (149)
413 cd03269 ABC_putative_ATPase Th 96.3 0.0041 8.9E-08 50.9 3.5 27 61-87 24-50 (210)
414 cd03219 ABC_Mj1267_LivG_branch 96.3 0.0037 8E-08 52.0 3.2 27 61-87 24-50 (236)
415 cd03264 ABC_drug_resistance_li 96.3 0.0037 8.1E-08 51.2 3.2 25 62-87 25-49 (211)
416 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.0051 1.1E-07 51.1 4.0 27 59-85 15-41 (235)
417 TIGR00176 mobB molybdopterin-g 96.3 0.0039 8.4E-08 49.0 3.1 23 65-87 1-23 (155)
418 COG1116 TauB ABC-type nitrate/ 96.3 0.0042 9.1E-08 52.3 3.4 26 61-86 27-52 (248)
419 cd03263 ABC_subfamily_A The AB 96.3 0.0042 9.1E-08 51.2 3.4 27 61-87 26-52 (220)
420 TIGR01618 phage_P_loop phage n 96.2 0.0031 6.7E-08 52.5 2.6 24 62-85 11-34 (220)
421 cd03247 ABCC_cytochrome_bd The 96.2 0.0044 9.5E-08 49.5 3.4 27 61-87 26-52 (178)
422 cd03258 ABC_MetN_methionine_tr 96.2 0.0042 9.1E-08 51.7 3.4 27 61-87 29-55 (233)
423 cd03259 ABC_Carb_Solutes_like 96.2 0.0043 9.3E-08 50.9 3.5 27 61-87 24-50 (213)
424 KOG0745 Putative ATP-dependent 96.2 0.0058 1.3E-07 55.3 4.4 32 64-95 227-258 (564)
425 TIGR03878 thermo_KaiC_2 KaiC d 96.2 0.0038 8.3E-08 53.2 3.2 36 60-95 33-73 (259)
426 TIGR00073 hypB hydrogenase acc 96.2 0.0049 1.1E-07 50.5 3.7 27 62-88 21-47 (207)
427 PRK10733 hflB ATP-dependent me 96.2 0.0033 7.2E-08 60.3 3.1 32 64-95 186-217 (644)
428 cd03229 ABC_Class3 This class 96.2 0.0045 9.8E-08 49.4 3.5 27 61-87 24-50 (178)
429 cd03256 ABC_PhnC_transporter A 96.2 0.0042 9.2E-08 51.8 3.4 27 61-87 25-51 (241)
430 cd00154 Rab Rab family. Rab G 96.2 0.0039 8.4E-08 47.4 2.9 21 65-85 2-22 (159)
431 cd03260 ABC_PstB_phosphate_tra 96.2 0.0044 9.5E-08 51.3 3.5 27 61-87 24-50 (227)
432 TIGR03709 PPK2_rel_1 polyphosp 96.2 0.099 2.1E-06 44.7 11.7 32 62-93 55-86 (264)
433 PF04665 Pox_A32: Poxvirus A32 96.2 0.0052 1.1E-07 51.8 3.9 27 61-87 11-37 (241)
434 cd04164 trmE TrmE (MnmE, ThdF, 96.2 0.0044 9.5E-08 47.3 3.2 24 63-86 1-24 (157)
435 PRK09361 radB DNA repair and r 96.2 0.0065 1.4E-07 50.3 4.5 37 59-95 19-60 (225)
436 TIGR02211 LolD_lipo_ex lipopro 96.2 0.0045 9.7E-08 51.0 3.4 27 61-87 29-55 (221)
437 PRK14969 DNA polymerase III su 96.2 0.0046 1E-07 58.0 3.9 28 63-90 38-65 (527)
438 cd03226 ABC_cobalt_CbiO_domain 96.2 0.0044 9.6E-08 50.5 3.3 27 61-87 24-50 (205)
439 cd04136 Rap_like Rap-like subf 96.2 0.0046 1E-07 47.7 3.3 22 64-85 2-23 (163)
440 COG0467 RAD55 RecA-superfamily 96.2 0.0019 4.2E-08 54.8 1.2 36 60-95 20-60 (260)
441 TIGR02315 ABC_phnC phosphonate 96.2 0.0045 9.7E-08 51.8 3.4 27 61-87 26-52 (243)
442 cd03296 ABC_CysA_sulfate_impor 96.2 0.0045 9.8E-08 51.8 3.4 27 61-87 26-52 (239)
443 PRK11889 flhF flagellar biosyn 96.2 0.0049 1.1E-07 55.6 3.8 26 62-87 240-265 (436)
444 TIGR00231 small_GTP small GTP- 96.2 0.0048 1E-07 46.5 3.3 24 64-87 2-25 (161)
445 COG0378 HypB Ni2+-binding GTPa 96.2 0.0049 1.1E-07 50.1 3.4 30 64-93 14-47 (202)
446 cd03230 ABC_DR_subfamily_A Thi 96.2 0.0049 1.1E-07 49.0 3.4 27 61-87 24-50 (173)
447 cd03293 ABC_NrtD_SsuB_transpor 96.2 0.0044 9.5E-08 51.1 3.3 27 61-87 28-54 (220)
448 smart00175 RAB Rab subfamily o 96.2 0.0042 9.1E-08 47.9 3.0 21 65-85 2-22 (164)
449 cd00876 Ras Ras family. The R 96.2 0.0038 8.2E-08 47.8 2.7 21 65-85 1-21 (160)
450 PRK10247 putative ABC transpor 96.2 0.0048 1E-07 51.2 3.5 26 61-86 31-56 (225)
451 cd03223 ABCD_peroxisomal_ALDP 96.2 0.005 1.1E-07 48.7 3.4 27 61-87 25-51 (166)
452 cd03257 ABC_NikE_OppD_transpor 96.2 0.0046 9.9E-08 51.1 3.3 27 61-87 29-55 (228)
453 PRK13541 cytochrome c biogenes 96.2 0.0049 1.1E-07 49.9 3.4 27 61-87 24-50 (195)
454 TIGR03864 PQQ_ABC_ATP ABC tran 96.2 0.0048 1E-07 51.5 3.4 27 61-87 25-51 (236)
455 cd04113 Rab4 Rab4 subfamily. 96.2 0.0043 9.3E-08 48.0 3.0 21 65-85 2-22 (161)
456 cd03218 ABC_YhbG The ABC trans 96.2 0.0049 1.1E-07 51.2 3.4 27 61-87 24-50 (232)
457 PRK13540 cytochrome c biogenes 96.2 0.005 1.1E-07 50.1 3.5 27 61-87 25-51 (200)
458 PF00437 T2SE: Type II/IV secr 96.2 0.0053 1.1E-07 52.3 3.7 25 63-87 127-151 (270)
459 PRK11629 lolD lipoprotein tran 96.2 0.0049 1.1E-07 51.4 3.4 27 61-87 33-59 (233)
460 PF03193 DUF258: Protein of un 96.2 0.005 1.1E-07 48.7 3.3 26 62-87 34-59 (161)
461 cd03232 ABC_PDR_domain2 The pl 96.2 0.0048 1E-07 49.9 3.3 25 61-85 31-55 (192)
462 cd03235 ABC_Metallic_Cations A 96.2 0.0045 9.7E-08 50.8 3.1 27 61-87 23-49 (213)
463 TIGR02323 CP_lyasePhnK phospho 96.2 0.0047 1E-07 52.1 3.3 27 61-87 27-53 (253)
464 cd04139 RalA_RalB RalA/RalB su 96.2 0.0047 1E-07 47.6 3.1 21 65-85 2-22 (164)
465 cd03246 ABCC_Protease_Secretio 96.1 0.0055 1.2E-07 48.7 3.5 27 61-87 26-52 (173)
466 PRK09302 circadian clock prote 96.1 0.0069 1.5E-07 56.5 4.7 36 60-95 28-69 (509)
467 PRK13851 type IV secretion sys 96.1 0.0043 9.4E-08 55.1 3.1 27 62-88 161-187 (344)
468 KOG0780 Signal recognition par 96.1 0.036 7.9E-07 49.6 8.8 107 60-177 98-225 (483)
469 PRK11264 putative amino-acid A 96.1 0.0051 1.1E-07 51.7 3.5 27 61-87 27-53 (250)
470 cd03265 ABC_DrrA DrrA is the A 96.1 0.0053 1.1E-07 50.6 3.5 27 61-87 24-50 (220)
471 cd03214 ABC_Iron-Siderophores_ 96.1 0.0055 1.2E-07 49.0 3.5 27 61-87 23-49 (180)
472 cd00157 Rho Rho (Ras homology) 96.1 0.005 1.1E-07 47.9 3.2 23 64-86 1-23 (171)
473 TIGR03410 urea_trans_UrtE urea 96.1 0.0051 1.1E-07 51.1 3.4 27 61-87 24-50 (230)
474 PRK15177 Vi polysaccharide exp 96.1 0.0053 1.1E-07 50.6 3.4 26 61-86 11-36 (213)
475 cd03268 ABC_BcrA_bacitracin_re 96.1 0.0054 1.2E-07 50.1 3.4 27 61-87 24-50 (208)
476 PRK14250 phosphate ABC transpo 96.1 0.0052 1.1E-07 51.5 3.4 27 61-87 27-53 (241)
477 KOG0727 26S proteasome regulat 96.1 0.012 2.5E-07 50.1 5.3 45 62-106 188-234 (408)
478 TIGR02770 nickel_nikD nickel i 96.1 0.0053 1.1E-07 51.1 3.3 27 61-87 10-36 (230)
479 cd03215 ABC_Carb_Monos_II This 96.1 0.0055 1.2E-07 49.1 3.3 27 61-87 24-50 (182)
480 TIGR02928 orc1/cdc6 family rep 96.1 0.0054 1.2E-07 54.3 3.6 26 62-87 39-64 (365)
481 cd03234 ABCG_White The White s 96.1 0.0057 1.2E-07 50.7 3.5 27 61-87 31-57 (226)
482 PF01443 Viral_helicase1: Vira 96.1 0.004 8.7E-08 51.5 2.6 22 66-87 1-22 (234)
483 PF13086 AAA_11: AAA domain; P 96.1 0.0052 1.1E-07 50.2 3.2 23 65-87 19-41 (236)
484 cd03222 ABC_RNaseL_inhibitor T 96.1 0.0054 1.2E-07 49.3 3.2 27 61-87 23-49 (177)
485 PRK11124 artP arginine transpo 96.1 0.0055 1.2E-07 51.3 3.4 27 61-87 26-52 (242)
486 PRK10771 thiQ thiamine transpo 96.1 0.0054 1.2E-07 51.1 3.3 27 61-87 23-49 (232)
487 COG1120 FepC ABC-type cobalami 96.1 0.0052 1.1E-07 52.3 3.2 28 61-88 26-53 (258)
488 TIGR03771 anch_rpt_ABC anchore 96.1 0.0055 1.2E-07 50.8 3.4 27 61-87 4-30 (223)
489 TIGR01978 sufC FeS assembly AT 96.1 0.0054 1.2E-07 51.2 3.4 26 61-86 24-49 (243)
490 cd04137 RheB Rheb (Ras Homolog 96.1 0.0055 1.2E-07 48.4 3.2 22 64-85 2-23 (180)
491 cd01895 EngA2 EngA2 subfamily. 96.1 0.0052 1.1E-07 47.5 3.1 24 63-86 2-25 (174)
492 PRK14267 phosphate ABC transpo 96.1 0.0055 1.2E-07 51.6 3.4 27 61-87 28-54 (253)
493 cd03228 ABCC_MRP_Like The MRP 96.1 0.0061 1.3E-07 48.3 3.5 27 61-87 26-52 (171)
494 PRK11248 tauB taurine transpor 96.1 0.0056 1.2E-07 51.9 3.4 27 61-87 25-51 (255)
495 PRK14242 phosphate transporter 96.1 0.0055 1.2E-07 51.6 3.4 26 61-86 30-55 (253)
496 TIGR02525 plasmid_TraJ plasmid 96.1 0.021 4.6E-07 51.3 7.2 35 65-99 151-190 (372)
497 PRK11701 phnK phosphonate C-P 96.1 0.0054 1.2E-07 51.9 3.3 27 61-87 30-56 (258)
498 PRK10908 cell division protein 96.1 0.0059 1.3E-07 50.4 3.5 27 61-87 26-52 (222)
499 cd03216 ABC_Carb_Monos_I This 96.1 0.006 1.3E-07 48.1 3.3 27 61-87 24-50 (163)
500 PRK14247 phosphate ABC transpo 96.1 0.0058 1.3E-07 51.4 3.4 27 61-87 27-53 (250)
No 1
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=3.5e-37 Score=259.65 Aligned_cols=169 Identities=46% Similarity=0.718 Sum_probs=154.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~ 140 (230)
+++++|+|+|||||||||+|+.|++.+|+.||++++++++++..+++++..++.++.+|.++|++++..++..+|.+...
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~ 106 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEE 106 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999986432
Q ss_pred cCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCC-------------CC----
Q 026951 141 RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG-------------AR---- 203 (230)
Q Consensus 141 ~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~-------------~~---- 203 (230)
....|||||||||+..|++.|+.+..++.||+|++|++++.+|+.+|+.|+.||+.||..+ .+
T Consensus 107 ~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~ 186 (261)
T PLN02459 107 EGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLP 186 (261)
T ss_pred cCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCC
Confidence 3468999999999999999999888899999999999999999999999999999999853 11
Q ss_pred ---------CCCCCcHHHHHHHHHHHHHhhhhhhc
Q 026951 204 ---------FSAADAASAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 204 ---------~~~dd~~~~~~~rl~~y~~~~~~~i~ 229 (230)
.+.||.++.+++||+.|++++.|+++
T Consensus 187 ~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~ 221 (261)
T PLN02459 187 PPECASKLITRADDTEEVVKARLRVYKEESQPVED 221 (261)
T ss_pred CcccccccccCCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 25799999999999999999999975
No 2
>PLN02674 adenylate kinase
Probab=100.00 E-value=3.5e-37 Score=258.36 Aligned_cols=166 Identities=24% Similarity=0.395 Sum_probs=154.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
..++|+|+|||||||||+|+.|+++||++|||+++++++++..++++|..+++++..|.++|++++..++.+++.+..+
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~- 108 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC- 108 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc-
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999999987633
Q ss_pred CCCeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCC------------
Q 026951 142 GESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF------------ 204 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~------------ 204 (230)
..|||+||||++..|++.|+.. ..+|.||+|++|++++.+|+.+|+.|+.||+.||..+.+|
T Consensus 109 -~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~ 187 (244)
T PLN02674 109 -QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEP 187 (244)
T ss_pred -CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCc
Confidence 5899999999999999988754 4689999999999999999999999999999999987665
Q ss_pred ---CCCCcHHHHHHHHHHHHHhhhhhhc
Q 026951 205 ---SAADAASAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 205 ---~~dd~~~~~~~rl~~y~~~~~~~i~ 229 (230)
+.||.++.+++|++.|++++.|+++
T Consensus 188 L~~R~DD~~e~i~~RL~~Y~~~t~pv~~ 215 (244)
T PLN02674 188 LIQRKDDTAAVLKSRLEAFHKQTEPVID 215 (244)
T ss_pred cccCCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 4789999999999999999999985
No 3
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=8.1e-35 Score=242.93 Aligned_cols=168 Identities=27% Similarity=0.453 Sum_probs=153.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
.+++|+|+|||||||||+|+.|+++||++||+++++++++...+++++..+++++.+|.++|++++.+++..++.+....
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 56789999999999999999999999999999999999999888899999999999999999999999999999862112
Q ss_pred CCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCC-------CC-----------
Q 026951 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG-------AR----------- 203 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~-------~~----------- 203 (230)
...+|||||||++..|++.|.....+++||+|++|++++.+|+.+|+.|+.||+.||..+ .+
T Consensus 85 ~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~~ 164 (229)
T PTZ00088 85 CFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGC 164 (229)
T ss_pred cCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCccccc
Confidence 368999999999999999998878899999999999999999999999999999999852 11
Q ss_pred -------CCCCCcHHHHHHHHHHHHHhhhhhhc
Q 026951 204 -------FSAADAASAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 204 -------~~~dd~~~~~~~rl~~y~~~~~~~i~ 229 (230)
.+.||.++++++|++.|++++.|+++
T Consensus 165 ~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~ 197 (229)
T PTZ00088 165 KGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQ 197 (229)
T ss_pred CCcccccCCCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 35789999999999999999999975
No 4
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=3.1e-34 Score=236.81 Aligned_cols=163 Identities=28% Similarity=0.407 Sum_probs=150.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCCC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~~ 144 (230)
+|+|+|+|||||||+|+.|++.+++.|++++++++++...+++.+..+++++.+|.++|++++.+++.+++.... ...
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~--~~~ 79 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIK--NND 79 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhccc--ccC
Confidence 589999999999999999999999999999999999999899999999999999999999999999999998753 367
Q ss_pred eEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCC---------------CCCCc
Q 026951 145 GFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SAADA 209 (230)
Q Consensus 145 ~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~---------------~~dd~ 209 (230)
+|||||||++..|++.|++......+|+|++|++++.+|+.+|+.|+.||+.||..+.++ +.||+
T Consensus 80 g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~ 159 (211)
T PRK14526 80 NFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK 159 (211)
T ss_pred cEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence 899999999999999998765445788999999999999999999999999999987654 46899
Q ss_pred HHHHHHHHHHHHHhhhhhhc
Q 026951 210 ASAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 210 ~~~~~~rl~~y~~~~~~~i~ 229 (230)
++.+++||+.|++++.|+++
T Consensus 160 ~e~i~~Rl~~y~~~t~pv~~ 179 (211)
T PRK14526 160 EESLKTRLQEYKLQTKPLIE 179 (211)
T ss_pred HHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999975
No 5
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.1e-34 Score=225.73 Aligned_cols=156 Identities=24% Similarity=0.403 Sum_probs=143.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCC-CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~-~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~ 138 (230)
+.++.+|+++|+|||||.|+|.+++++|++.|+|++||+|++... ++..|..|++++.+|.++|.+++..+|+++|...
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 357889999999999999999999999999999999999999987 9999999999999999999999999999999885
Q ss_pred cccCCCeEEEeCccCCHHHHHHHhcc-C-CcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHH
Q 026951 139 YYRGESGFILDGIPRTRIQAEILDQI-V-DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK 216 (230)
Q Consensus 139 ~~~~~~~~IlDg~p~~~~qa~~l~~~-~-~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~r 216 (230)
...++|+||||||+..|...|+.. . .+++|++|+|+++++.+|+.+|+..+ .+.||+++.+++|
T Consensus 85 --~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~------------~R~DDn~esikkR 150 (195)
T KOG3079|consen 85 --GDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSN------------SRSDDNEESIKKR 150 (195)
T ss_pred --CCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccC------------CCCCCchHHHHHH
Confidence 234569999999999999999855 3 58999999999999999999999742 2789999999999
Q ss_pred HHHHHHhhhhhhc
Q 026951 217 FRIYAEQINLTIS 229 (230)
Q Consensus 217 l~~y~~~~~~~i~ 229 (230)
+..|++.+.|+|+
T Consensus 151 ~et~~~~t~Pvi~ 163 (195)
T KOG3079|consen 151 LETYNKSTLPVIE 163 (195)
T ss_pred HHHHHHcchHHHH
Confidence 9999999999985
No 6
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=4.4e-34 Score=235.99 Aligned_cols=164 Identities=32% Similarity=0.511 Sum_probs=150.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCCC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~~ 144 (230)
+|+|+|+|||||||+|+.|++++|++||+++|++++++..+++.+..+.+++.+|..+|++++.+++..++.+..+ .+.
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~-~~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD-NEN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc-cCC
Confidence 3899999999999999999999999999999999999988899999999999999999999999999999987321 267
Q ss_pred eEEEeCccCCHHHHHHHhccC--CcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCC---------------CCC
Q 026951 145 GFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SAA 207 (230)
Q Consensus 145 ~~IlDg~p~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~---------------~~d 207 (230)
+|||||||++..|++.|.+.. .++.+|+|++|++++.+|+.+|+.|+.||..||..+.+| +.|
T Consensus 80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~d 159 (210)
T TIGR01351 80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQRED 159 (210)
T ss_pred cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCC
Confidence 999999999999999998664 589999999999999999999999999999999987553 468
Q ss_pred CcHHHHHHHHHHHHHhhhhhhc
Q 026951 208 DAASAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 208 d~~~~~~~rl~~y~~~~~~~i~ 229 (230)
|+++.+++|++.|++++.|+++
T Consensus 160 D~~e~i~~Rl~~y~~~~~~v~~ 181 (210)
T TIGR01351 160 DTEEVVKKRLEVYKEQTEPLID 181 (210)
T ss_pred CCHHHHHHHHHHHHHhhHHHHH
Confidence 8999999999999999999875
No 7
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=3.5e-34 Score=237.55 Aligned_cols=159 Identities=23% Similarity=0.402 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|+|||||||+|+.|+++|+++|+|++++++++...++++++.+++++.+|.++|++++..++.+++.+. ..
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~---~~ 77 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQD---GK 77 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhcc---CC
Confidence 369999999999999999999999999999999999999889999999999999999999999999999999874 27
Q ss_pred CeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchh-ccCCCCC-------------
Q 026951 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFL-RLGGARF------------- 204 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~-~~~~~~~------------- 204 (230)
.||||||||++..|++.|+.. ..+|.||+|++|++++.+|+.+|+.|+.||+.| +.++.++
T Consensus 78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~ 157 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGE 157 (223)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCc
Confidence 899999999999999988654 468999999999999999999999999988755 4443321
Q ss_pred ---CCCCc-HHHHHHHHHHHHHhhh
Q 026951 205 ---SAADA-ASAWKEKFRIYAEQIN 225 (230)
Q Consensus 205 ---~~dd~-~~~~~~rl~~y~~~~~ 225 (230)
+.||+ ++++++||+.|++++.
T Consensus 158 l~~R~DD~~ee~i~~Rl~~y~~~~~ 182 (223)
T PRK14529 158 LSTRADDQDEEAINKRHDIYYDTET 182 (223)
T ss_pred cccCCCCCcHHHHHHHHHHHHHccc
Confidence 46785 7899999999999844
No 8
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=4e-32 Score=225.10 Aligned_cols=164 Identities=27% Similarity=0.485 Sum_probs=149.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|+|||||||+|+.|++++|+.|++++++++++...+++.+..+.+++.+|..+|++++..++..++.+..+ .
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~--~ 78 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDC--K 78 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCc--c
Confidence 36999999999999999999999999999999999999988899999999999999999999999999999987532 4
Q ss_pred CeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCC--------------
Q 026951 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF-------------- 204 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~-------------- 204 (230)
.+|||||||++..|++.|+++ ..++.+|+|+||++++.+|+.+|..|+.||..||....++
T Consensus 79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~ 158 (215)
T PRK00279 79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELI 158 (215)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCccc
Confidence 599999999999999998643 3678999999999999999999999999999999986655
Q ss_pred -CCCCcHHHHHHHHHHHHHhhhhhhc
Q 026951 205 -SAADAASAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 205 -~~dd~~~~~~~rl~~y~~~~~~~i~ 229 (230)
+.||+++.+++|+..|++++.|+++
T Consensus 159 ~r~dd~~~~i~~Rl~~y~~~~~~i~~ 184 (215)
T PRK00279 159 QRADDNEETVRKRLEVYHKQTAPLID 184 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 3688999999999999999999875
No 9
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.97 E-value=4.9e-31 Score=206.96 Aligned_cols=139 Identities=37% Similarity=0.593 Sum_probs=125.4
Q ss_pred EEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCCCeEE
Q 026951 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGFI 147 (230)
Q Consensus 68 l~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~~~~I 147 (230)
|+|||||||||+|+.|+++||+.||++++++++++..+++.+..+++++.+|..+|++++.+++..++.+. ....|||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~--~~~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP--PCNRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG--GTTTEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh--cccceee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999976 3479999
Q ss_pred EeCccCCHHHHHHHhc-----cCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHHHHH
Q 026951 148 LDGIPRTRIQAEILDQ-----IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE 222 (230)
Q Consensus 148 lDg~p~~~~qa~~l~~-----~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~y~~ 222 (230)
|||||++..|++.|.+ ...|+.||+|+||++++.+|+.+ |+++.+++|++.|++
T Consensus 79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~---------------------d~~~~i~~Rl~~y~~ 137 (151)
T PF00406_consen 79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ---------------------DNEEVIKKRLEEYRE 137 (151)
T ss_dssp EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT---------------------GSHHHHHHHHHHHHH
T ss_pred eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc---------------------CCHHHHHHHHHHHHH
Confidence 9999999999999976 46789999999999999999988 457899999999999
Q ss_pred hhhhhhc
Q 026951 223 QINLTIS 229 (230)
Q Consensus 223 ~~~~~i~ 229 (230)
++.|+++
T Consensus 138 ~~~~i~~ 144 (151)
T PF00406_consen 138 NTEPILD 144 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999985
No 10
>PRK14530 adenylate kinase; Provisional
Probab=99.97 E-value=1.7e-30 Score=215.31 Aligned_cols=161 Identities=25% Similarity=0.424 Sum_probs=142.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHc-----CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-----SPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~-----~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~ 137 (230)
+++|+|+|+|||||||+|+.|++++|++|+++++++++.. ...+..+. +.+++.+|..+|+++...++...+..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 4579999999999999999999999999999999999886 23344554 67788999999999999999887764
Q ss_pred ccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCC-------------
Q 026951 138 GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF------------- 204 (230)
Q Consensus 138 ~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~------------- 204 (230)
..+||+||||++..|++.|..+..+++||+|++|++++.+|+.+|..++.||..||..+.+|
T Consensus 82 -----~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl 156 (215)
T PRK14530 82 -----ADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGEL 156 (215)
T ss_pred -----CCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcc
Confidence 46899999999999999998777899999999999999999999999999999999876553
Q ss_pred --CCCCcHHHHHHHHHHHHHhhhhhhc
Q 026951 205 --SAADAASAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 205 --~~dd~~~~~~~rl~~y~~~~~~~i~ 229 (230)
+.||+++.+++|+..|++++.|+++
T Consensus 157 ~~R~dD~~e~i~~Rl~~y~~~~~~v~~ 183 (215)
T PRK14530 157 IQRDDDTEETVRERLDVFEENTEPVIE 183 (215)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999875
No 11
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.97 E-value=5.2e-31 Score=217.26 Aligned_cols=166 Identities=39% Similarity=0.562 Sum_probs=154.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
++.+++++|+||+||+|+|.++++.|++.|++++|++++.+..+++++...++++..|.++||+++..++...+... .
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~--~ 91 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENP--R 91 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccc--c
Confidence 68999999999999999999999999999999999999999999999999999999999999999999888888876 3
Q ss_pred CCCeEEEeCccCCHHHHHHHh-ccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCC---------------
Q 026951 142 GESGFILDGIPRTRIQAEILD-QIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS--------------- 205 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~-~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~--------------- 205 (230)
...+|++||||++..|++.+. ....+|.||.|++|++.+.+|+..|++|+.+|+.||..+++|.
T Consensus 92 ~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr 171 (235)
T KOG3078|consen 92 CQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQR 171 (235)
T ss_pred cccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcC
Confidence 479999999999999988865 5578999999999999999999999999999999999887664
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhhc
Q 026951 206 AADAASAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 206 ~dd~~~~~~~rl~~y~~~~~~~i~ 229 (230)
.||.++.++.|+..|+++++|+++
T Consensus 172 ~dD~~e~v~~rL~~y~~~~~pv~e 195 (235)
T KOG3078|consen 172 EDDKPEVVKKRLKAYKEQTKPVLE 195 (235)
T ss_pred ccccHHHHHHHHHHHhhcchHHHH
Confidence 488999999999999999999875
No 12
>PRK13808 adenylate kinase; Provisional
Probab=99.97 E-value=3.5e-30 Score=224.03 Aligned_cols=157 Identities=27% Similarity=0.461 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|||||||||+|..|++.||++||+++|+++.++..+++.+..+.+++.+|.++||+++..++.++|.+..+ .
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~--~ 78 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDA--A 78 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc--c
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999987643 5
Q ss_pred CeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCC-ccchhccCCCCCCCCCcHHHHHHHH
Q 026951 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSP-HKEFLRLGGARFSAADAASAWKEKF 217 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~-~~~~~~~~~~~~~~dd~~~~~~~rl 217 (230)
.||||||||++..|++.|+++ ..||+||+|++|++++++|+..|..+.. +|. ..+.||+++.+.+|+
T Consensus 79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~-------~~R~DD~~E~i~kRL 151 (333)
T PRK13808 79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGE-------EVRADDTPEVLAKRL 151 (333)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCC-------ccCCCCCHHHHHHHH
Confidence 799999999999999988754 3699999999999999999999975321 121 136788999999999
Q ss_pred HHHHHhhhhhhc
Q 026951 218 RIYAEQINLTIS 229 (230)
Q Consensus 218 ~~y~~~~~~~i~ 229 (230)
..|++++.|+++
T Consensus 152 ~~Y~~~t~PLl~ 163 (333)
T PRK13808 152 ASYRAQTEPLVH 163 (333)
T ss_pred HHHHHHhHHHHH
Confidence 999999998874
No 13
>PRK14531 adenylate kinase; Provisional
Probab=99.97 E-value=4.8e-30 Score=207.64 Aligned_cols=148 Identities=28% Similarity=0.484 Sum_probs=134.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
..+|+|+|+|||||||+|+.|++++|++|++++|++++++..+++++..+..++..|..+|++++..++..++... .
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~---~ 78 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL---N 78 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc---c
Confidence 3579999999999999999999999999999999999999888999999999999999999999999999888763 3
Q ss_pred CCeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHH
Q 026951 143 ESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (230)
Q Consensus 143 ~~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl 217 (230)
+.+|||||||++..|+..|+++ ..++.||+|+||++++.+|+.+|. +.||.++.+++|+
T Consensus 79 ~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~----------------r~dD~~e~i~~Rl 142 (183)
T PRK14531 79 SGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG----------------RADDNEAVIRNRL 142 (183)
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC----------------CCCCCHHHHHHHH
Confidence 5789999999999999988654 257899999999999999999985 3468899999999
Q ss_pred HHHHHhhhhhhc
Q 026951 218 RIYAEQINLTIS 229 (230)
Q Consensus 218 ~~y~~~~~~~i~ 229 (230)
+.|++.+.|+++
T Consensus 143 ~~y~~~~~pv~~ 154 (183)
T PRK14531 143 EVYREKTAPLID 154 (183)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 14
>PRK14528 adenylate kinase; Provisional
Probab=99.97 E-value=6.7e-30 Score=207.40 Aligned_cols=152 Identities=28% Similarity=0.502 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|+|||||||+|+.|++++|++|+++++++++.+..+++++..+..++..|.++|++++..++.+++.+..+ .
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~--~ 79 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADC--K 79 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCc--c
Confidence 56999999999999999999999999999999999999998999999999999999999999999999999987643 5
Q ss_pred CeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHH
Q 026951 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~ 218 (230)
.+|||||||++..|++.|+++ ..+|.||+|+||++++.+|+.+|.... .+.||+++.+++|+.
T Consensus 80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~------------gr~dd~~e~i~~Rl~ 147 (186)
T PRK14528 80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIE------------GRADDNEATIKNRLD 147 (186)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcccc------------CCCCCCHHHHHHHHH
Confidence 789999999999999988754 369999999999999999999998632 156789999999999
Q ss_pred HHHHhhhhhhc
Q 026951 219 IYAEQINLTIS 229 (230)
Q Consensus 219 ~y~~~~~~~i~ 229 (230)
.|++++.|+++
T Consensus 148 ~y~~~~~pv~~ 158 (186)
T PRK14528 148 NYNKKTLPLLD 158 (186)
T ss_pred HHHHHhHHHHH
Confidence 99999999986
No 15
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.97 E-value=1.4e-29 Score=205.68 Aligned_cols=163 Identities=34% Similarity=0.553 Sum_probs=146.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCCC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~~ 144 (230)
+|+|+|+|||||||+|+.|++++|+.|+++++++++.+...++.+..+.+++.+|..+|++++..++..++.... .+.
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~--~~~ 78 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD--CKK 78 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc--ccC
Confidence 489999999999999999999999999999999999988888899999999999999999999999999998642 367
Q ss_pred eEEEeCccCCHHHHHHHhccC----CcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCC-------CCCCCCCcHHHH
Q 026951 145 GFILDGIPRTRIQAEILDQIV----DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG-------ARFSAADAASAW 213 (230)
Q Consensus 145 ~~IlDg~p~~~~qa~~l~~~~----~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~-------~~~~~dd~~~~~ 213 (230)
+||+||||++..|+..|.+.. .++++|+|++|++++.+|+.+|..++.||..||... ...+.||+++.+
T Consensus 79 ~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~dd~~~~i 158 (194)
T cd01428 79 GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETI 158 (194)
T ss_pred CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCCCCHHHH
Confidence 899999999999999987653 789999999999999999999999999999999711 011468889999
Q ss_pred HHHHHHHHHhhhhhhc
Q 026951 214 KEKFRIYAEQINLTIS 229 (230)
Q Consensus 214 ~~rl~~y~~~~~~~i~ 229 (230)
++|+..|++++.|+++
T Consensus 159 ~~R~~~y~~~~~~i~~ 174 (194)
T cd01428 159 KKRLEVYKEQTAPLID 174 (194)
T ss_pred HHHHHHHHHhHHHHHH
Confidence 9999999999999875
No 16
>PLN02842 nucleotide kinase
Probab=99.97 E-value=2.4e-29 Score=228.42 Aligned_cols=162 Identities=24% Similarity=0.424 Sum_probs=148.1
Q ss_pred EEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCCCeE
Q 026951 67 VLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESGF 146 (230)
Q Consensus 67 vl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~~~~ 146 (230)
+|+|+|||||||+|+.|+++|++.|++++++++.+...+++.|+.+++++.+|.++|++++..++.+++....+ ...+|
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~-~~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDA-KEKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccc-cCCcE
Confidence 37999999999999999999999999999999999999999999999999999999999999999999976432 35789
Q ss_pred EEeCccCCHHHHHHHhcc-CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCC-----------CCCCcHHHHH
Q 026951 147 ILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF-----------SAADAASAWK 214 (230)
Q Consensus 147 IlDg~p~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~-----------~~dd~~~~~~ 214 (230)
||||||++..|++.|+.. ..||+||+|++|++++++|+.+|..|+.||..||....++ +.||+++.++
T Consensus 80 ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ik 159 (505)
T PLN02842 80 LLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVK 159 (505)
T ss_pred EEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHH
Confidence 999999999999988765 4799999999999999999999999999999999976553 3588999999
Q ss_pred HHHHHHHHhhhhhhc
Q 026951 215 EKFRIYAEQINLTIS 229 (230)
Q Consensus 215 ~rl~~y~~~~~~~i~ 229 (230)
+|++.|++++.|+++
T Consensus 160 kRL~~Y~~~t~pIl~ 174 (505)
T PLN02842 160 ARLQIYKKNAEAILS 174 (505)
T ss_pred HHHHHHHHHhhhHHH
Confidence 999999999999875
No 17
>PRK14532 adenylate kinase; Provisional
Probab=99.97 E-value=5.6e-29 Score=201.83 Aligned_cols=150 Identities=27% Similarity=0.456 Sum_probs=134.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCCC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~~ 144 (230)
+|+|+|+|||||||+|+.|++++|+.|+++++++++++..+++.+..+++++..|..+|++++..++...+.... .+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~ 79 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAE--AAG 79 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcC--ccC
Confidence 699999999999999999999999999999999999988888999999999999999999999999999887653 368
Q ss_pred eEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHH
Q 026951 145 GFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (230)
Q Consensus 145 ~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~ 219 (230)
+||+||||++..|++.+..+ ..||.+|+|++|++++.+|+.+|..+. .+.||+++.+.+|++.
T Consensus 80 g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~------------~r~dd~~~~~~~Rl~~ 147 (188)
T PRK14532 80 GAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQ------------GRPDDNPEVFVTRLDA 147 (188)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcC------------CCCCCCHHHHHHHHHH
Confidence 99999999999999987643 468999999999999999999996422 1567788899999999
Q ss_pred HHHhhhhhh
Q 026951 220 YAEQINLTI 228 (230)
Q Consensus 220 y~~~~~~~i 228 (230)
|..+..|++
T Consensus 148 ~~~~~~~i~ 156 (188)
T PRK14532 148 YNAQTAPLL 156 (188)
T ss_pred HHHHHHHHH
Confidence 999998875
No 18
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.96 E-value=3.7e-28 Score=195.52 Aligned_cols=149 Identities=33% Similarity=0.626 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|+|||||||+|+.|+++++++|+|++++++......++++..++.++.+|.++|+++...++..++....|.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~-- 78 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCK-- 78 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhccc--
Confidence 469999999999999999999999999999999999999989999999999999999999999999999999986442
Q ss_pred CeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHH
Q 026951 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~ 218 (230)
.+||+||||++..|++.++.. ..+|.++.++++.+.+.+|+..|.. +.||.++.+++|+.
T Consensus 79 ~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~---------------r~dd~~~~~~~R~~ 143 (178)
T COG0563 79 AGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV---------------REDDNEETVKKRLK 143 (178)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc---------------cccCCHHHHHHHHH
Confidence 399999999999999998754 4789999999999999999999975 46889999999999
Q ss_pred HHHHhhhhhhc
Q 026951 219 IYAEQINLTIS 229 (230)
Q Consensus 219 ~y~~~~~~~i~ 229 (230)
.|++++.|++.
T Consensus 144 ~y~~~~~pli~ 154 (178)
T COG0563 144 VYHEQTAPLIE 154 (178)
T ss_pred HHHhcccchhh
Confidence 99999999874
No 19
>PRK14527 adenylate kinase; Provisional
Probab=99.96 E-value=6.6e-28 Score=196.31 Aligned_cols=154 Identities=25% Similarity=0.426 Sum_probs=137.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~ 140 (230)
.++..|+|+|+|||||||+|+.|++++|+.|++++++++.....+++++..+..++.+|..+|++++..++.+.+....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~- 82 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGME- 82 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC-
Confidence 3678899999999999999999999999999999999999988888999999999999999999999999999887642
Q ss_pred cCCCeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHH
Q 026951 141 RGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKE 215 (230)
Q Consensus 141 ~~~~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~ 215 (230)
..+||+||||++..|++.|..+ ..++.||+|+||++++.+|+.+|.... .+.||+++.+++
T Consensus 83 --~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~------------~r~dd~~~~~~~ 148 (191)
T PRK14527 83 --PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQE------------GRSDDNEETVRR 148 (191)
T ss_pred --CCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccC------------CCCCCCHHHHHH
Confidence 3579999999999999877643 357889999999999999999997532 156788999999
Q ss_pred HHHHHHHhhhhhhc
Q 026951 216 KFRIYAEQINLTIS 229 (230)
Q Consensus 216 rl~~y~~~~~~~i~ 229 (230)
|++.|++++.|+++
T Consensus 149 R~~~y~~~~~~v~~ 162 (191)
T PRK14527 149 RQQVYREQTQPLVD 162 (191)
T ss_pred HHHHHHHHhHHHHH
Confidence 99999999999875
No 20
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.96 E-value=3.6e-28 Score=195.98 Aligned_cols=150 Identities=28% Similarity=0.477 Sum_probs=133.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCCC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~~ 144 (230)
.|+|+|+|||||||+|+.|++++|+.|++++|++++.+..+++.++.+++++.+|..+|++++..++..++... .+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~---~~~ 77 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQAD---GSK 77 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc---CCC
Confidence 38999999999999999999999999999999999998888889999999999999999999999999888763 267
Q ss_pred eEEEeCccCCHHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHHH
Q 026951 145 GFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY 220 (230)
Q Consensus 145 ~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~y 220 (230)
+|||||||++..|+..|.+. ..||++|+|++|++++.+|+.+|.... .+.||+.+.+++|+..|
T Consensus 78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~------------~r~dd~~e~~~~r~~~y 145 (183)
T TIGR01359 78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSS------------GRVDDNIESIKKRFRTY 145 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccC------------CCCCCCHHHHHHHHHHH
Confidence 99999999999999877643 478999999999999999999997531 13567889999999999
Q ss_pred HHhhhhhhc
Q 026951 221 AEQINLTIS 229 (230)
Q Consensus 221 ~~~~~~~i~ 229 (230)
.+...|+++
T Consensus 146 ~~~~~~i~~ 154 (183)
T TIGR01359 146 NEQTLPVIE 154 (183)
T ss_pred HHHHHHHHH
Confidence 999888764
No 21
>PLN02200 adenylate kinase family protein
Probab=99.96 E-value=6.6e-28 Score=202.21 Aligned_cols=151 Identities=26% Similarity=0.469 Sum_probs=135.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
.+.+|+|+|+|||||||+|+.|++++|+.||++++++++.+...++.+..+.+++..|..+|++++.+++..++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~--- 118 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS--- 118 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---
Confidence 45789999999999999999999999999999999999998888889999999999999999999999999888753
Q ss_pred CCCeEEEeCccCCHHHHHHHhcc--CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHH
Q 026951 142 GESGFILDGIPRTRIQAEILDQI--VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~ 219 (230)
...+|||||||++..|+..|.+. ..||.+|+|++|++++.+|+.+|+.. +.||+++.+++|++.
T Consensus 119 ~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~--------------r~dd~~e~~~~Rl~~ 184 (234)
T PLN02200 119 DNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQG--------------RVDDNIDTIKKRLKV 184 (234)
T ss_pred CCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCC--------------CCCCCHHHHHHHHHH
Confidence 35789999999999999988765 36899999999999999999998641 456788999999999
Q ss_pred HHHhhhhhhc
Q 026951 220 YAEQINLTIS 229 (230)
Q Consensus 220 y~~~~~~~i~ 229 (230)
|.+.++|+++
T Consensus 185 y~~~~~pv~~ 194 (234)
T PLN02200 185 FNALNLPVID 194 (234)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 22
>PRK02496 adk adenylate kinase; Provisional
Probab=99.96 E-value=1.5e-27 Score=192.93 Aligned_cols=148 Identities=30% Similarity=0.538 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|+|||||||+|+.|++.+|++|+++++++++....+++.+..+..++.+|..+|++++..++..++.+..+ .
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~--~ 79 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDA--A 79 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc--c
Confidence 57999999999999999999999999999999999999988899999999999999999999999999999876532 5
Q ss_pred CeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHH
Q 026951 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~ 218 (230)
.+||+||||++..|+..+... ..++++|+|++|++++.+|+..|.. .||.++.+++|++
T Consensus 80 ~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~----------------~dd~~~~~~~r~~ 143 (184)
T PRK02496 80 NGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGR----------------KDDTEEVIRRRLE 143 (184)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCC----------------CCCCHHHHHHHHH
Confidence 789999999999999887643 3689999999999999999999852 3577899999999
Q ss_pred HHHHhhhhhhc
Q 026951 219 IYAEQINLTIS 229 (230)
Q Consensus 219 ~y~~~~~~~i~ 229 (230)
.|.+++.|+++
T Consensus 144 ~y~~~~~~v~~ 154 (184)
T PRK02496 144 VYREQTAPLID 154 (184)
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.94 E-value=6e-25 Score=177.44 Aligned_cols=153 Identities=28% Similarity=0.434 Sum_probs=132.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
...|+|+|+|||||||+|+.|++++|+.++++++++++....+++.++.+..++.+|..+|++.+...+...+.... ..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 81 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAAL-GT 81 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccc-Cc
Confidence 45799999999999999999999999999999999999877777788889999999999999998888887776532 34
Q ss_pred CCeEEEeCccCCHHHHHHHhc-cCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHHHH
Q 026951 143 ESGFILDGIPRTRIQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYA 221 (230)
Q Consensus 143 ~~~~IlDg~p~~~~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~y~ 221 (230)
+.+||+||||++..|+..+.. +..||++|+|++|++++.+|+.+|.... .+.|+.++.+.+|++.|.
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~------------~r~d~~~~~~~~r~~~~~ 149 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETS------------GRVDDNEKTIKKRLETYY 149 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccC------------CCCCCCHHHHHHHHHHHH
Confidence 689999999999999998864 4579999999999999999999987411 156778899999999999
Q ss_pred Hhhhhhh
Q 026951 222 EQINLTI 228 (230)
Q Consensus 222 ~~~~~~i 228 (230)
++..|++
T Consensus 150 ~~~~~~~ 156 (188)
T TIGR01360 150 KATEPVI 156 (188)
T ss_pred HhhHHHH
Confidence 9888764
No 24
>PRK01184 hypothetical protein; Provisional
Probab=99.69 E-value=1.5e-15 Score=122.55 Aligned_cols=118 Identities=17% Similarity=0.300 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCC-CC-----hHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RS-----ALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~-~~-----~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~ 137 (230)
++|+|+|+|||||||+++ +++++|+++++++|++++.... +. ..+..+..... .+ ..+.+..++...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~~-~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--EL-GMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--HH-ChHHHHHHHHHHHHh
Confidence 579999999999999987 7899999999999999987631 21 24444444332 12 223444444455544
Q ss_pred ccccCCCeEEEeCccCCHHHHHHHhccCC-cCEEEEEecCHHHHHHHHhcCCC
Q 026951 138 GYYRGESGFILDGIPRTRIQAEILDQIVD-VDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 138 ~~~~~~~~~IlDg~p~~~~qa~~l~~~~~-~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.++..+|+||+ ++..|.+.+.+... ...+|+++||++++.+|+..|..
T Consensus 78 ---~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~ 126 (184)
T PRK01184 78 ---KGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGR 126 (184)
T ss_pred ---cCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCC
Confidence 24678999999 78888888766543 66899999999999999998864
No 25
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.66 E-value=3.6e-15 Score=118.26 Aligned_cols=143 Identities=20% Similarity=0.252 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcccc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~-g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
.+.|+|+|+|||||||+++.||+.++++++++|.++.+... ..|.+++.. |...--+.-.+++...+..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g------~sI~eIF~~~GE~~FR~~E~~vl~~l~~~---- 71 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG------MSIAEIFEEEGEEGFRRLETEVLKELLEE---- 71 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC------cCHHHHHHHHhHHHHHHHHHHHHHHHhhc----
Confidence 45799999999999999999999999999999999987643 456666654 3211111222222222221
Q ss_pred CCCeEEEe--CccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCC---cHHHHHHH
Q 026951 142 GESGFILD--GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAAD---AASAWKEK 216 (230)
Q Consensus 142 ~~~~~IlD--g~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd---~~~~~~~r 216 (230)
+..+|-. |...+......+... ..||||++|.+++++|+.....-|. ....+. ..+.+++|
T Consensus 72 -~~~ViaTGGG~v~~~enr~~l~~~---g~vv~L~~~~e~l~~Rl~~~~~RPl----------l~~~~~~~~l~~L~~~R 137 (172)
T COG0703 72 -DNAVIATGGGAVLSEENRNLLKKR---GIVVYLDAPFETLYERLQRDRKRPL----------LQTEDPREELEELLEER 137 (172)
T ss_pred -CCeEEECCCccccCHHHHHHHHhC---CeEEEEeCCHHHHHHHhccccCCCc----------ccCCChHHHHHHHHHHH
Confidence 2233333 234445555555543 3799999999999999984432220 001122 46899999
Q ss_pred HHHHHHhhhhhhc
Q 026951 217 FRIYAEQINLTIS 229 (230)
Q Consensus 217 l~~y~~~~~~~i~ 229 (230)
...|++.+.-+++
T Consensus 138 ~~~Y~e~a~~~~~ 150 (172)
T COG0703 138 QPLYREVADFIID 150 (172)
T ss_pred HHHHHHhCcEEec
Confidence 9999998877664
No 26
>PRK08356 hypothetical protein; Provisional
Probab=99.65 E-value=1.4e-15 Score=124.17 Aligned_cols=120 Identities=17% Similarity=0.173 Sum_probs=87.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCC----CC---hHHHH----HHHHHHCCCCCCH----HH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP----RS---ALYKQ----IANAVNEGKLVPE----DV 126 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~----~~---~~~~~----i~~~l~~g~~v~d----e~ 126 (230)
..+.|+|+|||||||||+|+.|+ ++|+++|++++.++..... .+ ..+.. ...++..|..+++ ++
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 34679999999999999999996 5899999999866543221 11 11111 2345555666664 55
Q ss_pred HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCC
Q 026951 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 127 ~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
+.+++...+.. ...|++||+ ++..|++.|... ...+|+|++|.+++.+|+.+|...
T Consensus 83 ~~~~~~~~~~~-----~~~ividG~-r~~~q~~~l~~~--~~~vi~l~~~~~~~~~Rl~~R~~~ 138 (195)
T PRK08356 83 LIRLAVDKKRN-----CKNIAIDGV-RSRGEVEAIKRM--GGKVIYVEAKPEIRFERLRRRGAE 138 (195)
T ss_pred HHHHHHHHhcc-----CCeEEEcCc-CCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHhcCCc
Confidence 56665555532 236999999 999999988764 247999999999999999998753
No 27
>PRK00625 shikimate kinase; Provisional
Probab=99.64 E-value=2.2e-15 Score=120.84 Aligned_cols=145 Identities=13% Similarity=0.077 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|+|||||||+++.|++.++++++++|+++++..... ....+.+++.... .+.....-...+... ...
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~G---e~~fr~~E~~~l~~l--~~~ 73 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYG---EEGFCREEFLALTSL--PVI 73 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHC---HHHHHHHHHHHHHHh--ccC
Confidence 369999999999999999999999999999999998754321 0112334333211 111111111222221 112
Q ss_pred CeEEEeC--ccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHHHH
Q 026951 144 SGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYA 221 (230)
Q Consensus 144 ~~~IlDg--~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~y~ 221 (230)
..+|.+| .+........+ ..-..||+|++|.+++.+|+.+|...+. ....+...+.+++|...|.
T Consensus 74 ~~VIs~GGg~~~~~e~~~~l---~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~----------~~~~~~~~~ll~~R~~~Y~ 140 (173)
T PRK00625 74 PSIVALGGGTLMIEPSYAHI---RNRGLLVLLSLPIATIYQRLQKRGLPER----------LKHAPSLEEILSQRIDRMR 140 (173)
T ss_pred CeEEECCCCccCCHHHHHHH---hcCCEEEEEECCHHHHHHHHhcCCCCcc----------cCcHHHHHHHHHHHHHHHH
Confidence 3344444 23333222233 2335799999999999999998864220 0012345778999999999
Q ss_pred Hhhhhhh
Q 026951 222 EQINLTI 228 (230)
Q Consensus 222 ~~~~~~i 228 (230)
+.++-++
T Consensus 141 ~~ad~~i 147 (173)
T PRK00625 141 SIADYIF 147 (173)
T ss_pred HHCCEEE
Confidence 8776654
No 28
>PRK08118 topology modulation protein; Reviewed
Probab=99.61 E-value=4.4e-15 Score=118.49 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
.+|+|+|+|||||||+|+.|++.++++++++|++++... ...++++....++...+. .
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~----------------w~~~~~~~~~~~~~~~~~------~ 59 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN----------------WEGVPKEEQITVQNELVK------E 59 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC----------------CcCCCHHHHHHHHHHHhc------C
Confidence 479999999999999999999999999999999886421 123455555555554343 3
Q ss_pred CeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.+||+||.+..... ..+ ..+|.+|+|++|.+++..|+.+|..
T Consensus 60 ~~wVidG~~~~~~~-~~l---~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 60 DEWIIDGNYGGTMD-IRL---NAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred CCEEEeCCcchHHH-HHH---HhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 58999995443221 112 2589999999999999999999854
No 29
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.60 E-value=5.4e-15 Score=128.06 Aligned_cols=146 Identities=12% Similarity=0.093 Sum_probs=94.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~-~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
+..|+++|+|||||||+|+.|++.+ ++.+++.|++.+...... ..+.. .+...+...-.+.....+...+..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~---- 74 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHG-EWGEY--KFTKEKEDLVTKAQEAAALAALKS---- 74 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCC-ccccc--ccChHHHHHHHHHHHHHHHHHHHc----
Confidence 5689999999999999999999999 899999977654432221 11100 000000000011222333333332
Q ss_pred CCCeEEEeCccCCHHHHHHHhccC---CcC-EEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHH
Q 026951 142 GESGFILDGIPRTRIQAEILDQIV---DVD-LVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~~---~~d-~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl 217 (230)
+.++|+|+++.+..+...+..+. ... .+|+|++|.+++.+|+.+|..+. -+++..+.+.+|+
T Consensus 75 -g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~-------------~~~~~i~~~~~~~ 140 (300)
T PHA02530 75 -GKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERA-------------VPEDVLRSMFKQM 140 (300)
T ss_pred -CCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCC-------------CCHHHHHHHHHHH
Confidence 57899999999988888775431 233 37999999999999999996433 1223344445999
Q ss_pred HHHHHhhhhhhc
Q 026951 218 RIYAEQINLTIS 229 (230)
Q Consensus 218 ~~y~~~~~~~i~ 229 (230)
+.|.+.+.|++.
T Consensus 141 ~~~~~~~~p~~~ 152 (300)
T PHA02530 141 KEYRGLVWPVYT 152 (300)
T ss_pred HHhcCCCCceec
Confidence 999888877753
No 30
>PRK06217 hypothetical protein; Validated
Probab=99.58 E-value=1.1e-14 Score=117.80 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|+|||||||+|+.|++.+|++|+++|++++... +.+.+ ...+++.....+...+.. +
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~-----~ 64 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT--DPPFT----------TKRPPEERLRLLLEDLRP-----R 64 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC--CCCcc----------ccCCHHHHHHHHHHHHhc-----C
Confidence 579999999999999999999999999999999887431 11111 123444445555444433 4
Q ss_pred CeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCC
Q 026951 144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
.+|||||++.... ..+. ..+|.+|+|++|.+++.+|+.+|...
T Consensus 65 ~~~vi~G~~~~~~--~~~~--~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 65 EGWVLSGSALGWG--DPLE--PLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred CCEEEEccHHHHH--HHHH--hhCCEEEEEECCHHHHHHHHHcCccc
Confidence 6899999986532 2222 34788999999999999999999754
No 31
>PRK13949 shikimate kinase; Provisional
Probab=99.57 E-value=1.4e-13 Score=110.08 Aligned_cols=109 Identities=16% Similarity=0.250 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhccccC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~-~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
.+|+|+|+|||||||+++.|++.++++++++|+++++.... .+.+++. .|.....+....++.+ +..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~------~~~~~~~~~g~~~fr~~e~~~l~~-l~~----- 69 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK------TVGDIFAERGEAVFRELERNMLHE-VAE----- 69 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc------cHHHHHHHhCHHHHHHHHHHHHHH-HHh-----
Confidence 46999999999999999999999999999999988765432 2333332 2332223333444433 332
Q ss_pred CCeEEE-e--CccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcC
Q 026951 143 ESGFIL-D--GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (230)
Q Consensus 143 ~~~~Il-D--g~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (230)
..++|+ + |.|....+.+.+.+. ++||+|++|.+++.+|+..+
T Consensus 70 ~~~~vis~Ggg~~~~~~~~~~l~~~---~~vi~L~~~~~~~~~Ri~~~ 114 (169)
T PRK13949 70 FEDVVISTGGGAPCFFDNMELMNAS---GTTVYLKVSPEVLFVRLRLA 114 (169)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHhC---CeEEEEECCHHHHHHHHhcC
Confidence 245555 4 456666666666543 67999999999999999753
No 32
>PRK13973 thymidylate kinase; Provisional
Probab=99.56 E-value=1.2e-13 Score=114.34 Aligned_cols=148 Identities=11% Similarity=0.105 Sum_probs=90.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---CCCccch--------hHHHHHHcCCC--ChHHHHHHHHHHCCCCCCHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISM--------GSLVRQELSPR--SALYKQIANAVNEGKLVPEDVIF 128 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~---~~~~is~--------~dll~~~~~~~--~~~~~~i~~~l~~g~~v~de~~~ 128 (230)
+++.|+|.|++||||||+++.|++.+ |+.++.+ ++++++.+..+ ...+..+..++-.+ ...+.+.
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~ 79 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE 79 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence 36889999999999999999999999 7777765 55555543321 11111111111110 1112333
Q ss_pred HHHHHHHHhccccCCCeEEEeCccCC------------HHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCCCCCC
Q 026951 129 ALLSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSP 192 (230)
Q Consensus 129 ~ll~~~l~~~~~~~~~~~IlDg~p~~------------~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~ 192 (230)
.++.+.+.. +..+|.|+|-.+ ..+...+..+ ..||++|+|+||++++.+|+.+|....
T Consensus 80 ~~i~~~l~~-----g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~- 153 (213)
T PRK13973 80 EVIRPALAR-----GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSD- 153 (213)
T ss_pred HHHHHHHHC-----CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCC-
Confidence 445555554 456777876522 2234444322 369999999999999999999996422
Q ss_pred ccchhccCCCCCCCCCcHHHHHHHHHHHHHhhh
Q 026951 193 HKEFLRLGGARFSAADAASAWKEKFRIYAEQIN 225 (230)
Q Consensus 193 ~~~~~~~~~~~~~~dd~~~~~~~rl~~y~~~~~ 225 (230)
.... -.++..+.++++.+.|.+.++
T Consensus 154 ~~~~--------~e~~~~~~~~~~~~~y~~l~~ 178 (213)
T PRK13973 154 TPDR--------FEKEDLAFHEKRREAFLQIAA 178 (213)
T ss_pred ccCc--------hhhchHHHHHHHHHHHHHHHH
Confidence 0000 112345677888888888763
No 33
>PRK03839 putative kinase; Provisional
Probab=99.56 E-value=2.1e-14 Score=115.54 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=72.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCCC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~~ 144 (230)
+|+|+|+|||||||+|+.|+++++++|+++++++++... +..... ..+...+.+...+... ..+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~-----~~~~~~--------~~~~~~~~l~~~~~~~--~~~~ 66 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGI-----GEEKDD--------EMEIDFDKLAYFIEEE--FKEK 66 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCC-----cccCCh--------hhhcCHHHHHHHHHHh--ccCC
Confidence 699999999999999999999999999999999875311 110000 0012233344444332 1246
Q ss_pred eEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 145 GFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 145 ~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
++|+||++.. +..+|.+|+|+++++++.+|+..|..
T Consensus 67 ~vIidG~~~~---------l~~~~~vi~L~~~~~~~~~Rl~~R~~ 102 (180)
T PRK03839 67 NVVLDGHLSH---------LLPVDYVIVLRAHPKIIKERLKERGY 102 (180)
T ss_pred CEEEEecccc---------ccCCCEEEEEECCHHHHHHHHHHcCC
Confidence 7999997532 24689999999999999999998864
No 34
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.53 E-value=4.3e-14 Score=108.68 Aligned_cols=111 Identities=20% Similarity=0.238 Sum_probs=82.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
..++|+|+|.||+||||+|++||+++|++||.+++++++.-- .....+- -+-..++++.+...|...+.+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l-----~~gyDE~-y~c~i~DEdkv~D~Le~~m~~---- 75 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL-----YEGYDEE-YKCHILDEDKVLDELEPLMIE---- 75 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc-----hhccccc-ccCccccHHHHHHHHHHHHhc----
Confidence 456899999999999999999999999999999999987421 1000000 012456778888888887775
Q ss_pred CCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCC
Q 026951 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
.|.|+|-..... |.+ -.+|+|++|.||.+++.+||..|..+
T Consensus 76 --Gg~IVDyHgCd~-----Fpe-rwfdlVvVLr~~~s~LY~RL~sRgY~ 116 (176)
T KOG3347|consen 76 --GGNIVDYHGCDF-----FPE-RWFDLVVVLRTPNSVLYDRLKSRGYS 116 (176)
T ss_pred --CCcEEeecccCc-----cch-hheeEEEEEecCchHHHHHHHHcCCC
Confidence 688998543321 111 15789999999999999999999854
No 35
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.51 E-value=4.7e-13 Score=103.12 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=77.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCCh----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSA----LYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~----~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~ 140 (230)
+|+++|+|||||||+++.|++.++..+++.|++.........+ ....... -.+.+...+...+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~--- 69 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER--------AYQILNAAIRKALRN--- 69 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH--------HHHHHHHHHHHHHHT---
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH--------HHHHHHHHHHHHHHc---
Confidence 4899999999999999999999999999998877765432111 0010000 011333444444444
Q ss_pred cCCCeEEEeCccCCHHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCCCC
Q 026951 141 RGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 141 ~~~~~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
+..+|+|.......+...+.++ +....+|+|++|.+++.+|+..|...
T Consensus 70 --g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 70 --GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNRE 121 (143)
T ss_dssp --T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred --CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence 5779999877776666555433 34567999999999999999999864
No 36
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.50 E-value=4.1e-13 Score=109.73 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCC------CCH-------------
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL------VPE------------- 124 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~------v~d------------- 124 (230)
++|+|+|++||||||+|+.|++.+|++++++|++.++.+.++.+.++.+.+.+..+.+ +..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 4699999999999999999999899999999999999998888888888877643221 221
Q ss_pred -----HHHHHHHHHHHHhcc--ccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 125 -----DVIFALLSKRLEEGY--YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 125 -----e~~~~ll~~~l~~~~--~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+++.+.+...+.+.. ......+|+| .|...+. .+. ..+|.+|+++||.++..+|+..|+.
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e-~pll~E~--~~~--~~~D~ii~V~a~~e~r~~Rl~~R~g 148 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLV-IPLLFEA--KLT--DLCSEIWVVDCSPEQQLQRLIKRDG 148 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEE-eHHhcCc--chH--hCCCEEEEEECCHHHHHHHHHHcCC
Confidence 123333333332111 1112345555 2322111 011 2579999999999999999999963
No 37
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.48 E-value=1.6e-12 Score=101.35 Aligned_cols=142 Identities=19% Similarity=0.236 Sum_probs=85.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCCCe
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGESG 145 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~~~ 145 (230)
|+|+|+|||||||+++.|++.+|+++++.+++++..... ...+.... .| .+.........+.... ...+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~~~~~~---~~----~~~~~~~e~~~~~~~~--~~~~ 70 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIPEIFAE---EG----EEGFRELEREVLLLLL--TKEN 70 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHHHHHHH---HC----HHHHHHHHHHHHHHHh--ccCC
Confidence 899999999999999999999999999999988776532 22222111 11 1222222111222111 1235
Q ss_pred EEEeC---ccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHHHHH
Q 026951 146 FILDG---IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAE 222 (230)
Q Consensus 146 ~IlDg---~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~y~~ 222 (230)
+||++ +..+...... +.....+|+|++|.+++.+|+..|...+. -.. . ..+...+.+.+|.+.|.+
T Consensus 71 ~vi~~g~~~i~~~~~~~~---~~~~~~~i~l~~~~e~~~~R~~~r~~r~~-----~~~-~--~~~~~~~~~~~r~~~Y~~ 139 (154)
T cd00464 71 AVIATGGGAVLREENRRL---LLENGIVVWLDASPEELLERLARDKTRPL-----LQD-E--DPERLRELLEEREPLYRE 139 (154)
T ss_pred cEEECCCCccCcHHHHHH---HHcCCeEEEEeCCHHHHHHHhccCCCCCC-----CCC-C--CHHHHHHHHHHHHHHHHH
Confidence 55553 2222222122 22356799999999999999988752220 000 0 012457788899999988
Q ss_pred hhhhhhc
Q 026951 223 QINLTIS 229 (230)
Q Consensus 223 ~~~~~i~ 229 (230)
.+..+++
T Consensus 140 ~ad~~i~ 146 (154)
T cd00464 140 VADLTID 146 (154)
T ss_pred hCcEEEE
Confidence 7776654
No 38
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.48 E-value=5e-13 Score=109.13 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=82.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCC-----CCH-------------
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPE------------- 124 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~-----v~d------------- 124 (230)
+..|+|+|++||||||+++.|++ +|+++|++|++.++.+.++++..+.+.+.+..+.+ +..
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 45799999999999999999988 99999999999999988887777777776643322 221
Q ss_pred -----HHHHHHHHHHHHhccc--cCCCeEEEeCccCCHHHHHHHhcc-CCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 125 -----DVIFALLSKRLEEGYY--RGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 125 -----e~~~~ll~~~l~~~~~--~~~~~~IlDg~p~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.++++.+...+..... ....-+|+|. |...+. .+ ..+|.||++++|+++..+|+.+|+.
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e~-----~~~~~~D~vi~V~a~~e~~~~Rl~~R~~ 147 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFEN-----GLEKLVDRVLVVDAPPETQLERLMARDG 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhcC-----CchhhCCeEEEEECCHHHHHHHHHHcCC
Confidence 2333333333322111 1123455652 322110 11 2579999999999999999999864
No 39
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.45 E-value=2.3e-13 Score=107.28 Aligned_cols=105 Identities=21% Similarity=0.247 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcC-CCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~-~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
++|+|+|.||+||||+|++|+ ++|+.+++..+++.+.-- .+.. + ......+..+.....+...+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~d--e-----~r~s~~vD~d~~~~~le~~~~------ 66 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYD--E-----LRKSVIVDVDKLRKRLEELLR------ 66 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccC--C-----ccceEEeeHHHHHHHHHHHhc------
Confidence 479999999999999999999 999999999998886421 0000 0 000123344444444444332
Q ss_pred CCeEEEeCccCCHHHHHHHhccCC-cCEEEEEecCHHHHHHHHhcCCCCC
Q 026951 143 ESGFILDGIPRTRIQAEILDQIVD-VDLVINFKSIEDQLVKRNLESEAFS 191 (230)
Q Consensus 143 ~~~~IlDg~p~~~~qa~~l~~~~~-~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (230)
..+.|+|++ +.++.. +|+||+|.|+++++.+||++|+..+
T Consensus 67 ~~~~Ivd~H---------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~ 107 (180)
T COG1936 67 EGSGIVDSH---------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSE 107 (180)
T ss_pred cCCeEeech---------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCH
Confidence 468899975 334444 8999999999999999999999744
No 40
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.45 E-value=2.5e-12 Score=105.35 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=80.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCH------------------
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE------------------ 124 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~d------------------ 124 (230)
++.|.|+|.|||||||+|+.+++ +|++.+++|+.+++.+.++.+....+.+.+.....-.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 57899999999999999999988 99999999999999998888777777766543222111
Q ss_pred -----HHHHHHHHHHHH-hccccCCCeEEEeCccCCHHHHHHHhcc-C--CcCEEEEEecCHHHHHHHHhcCCC
Q 026951 125 -----DVIFALLSKRLE-EGYYRGESGFILDGIPRTRIQAEILDQI-V--DVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 125 -----e~~~~ll~~~l~-~~~~~~~~~~IlDg~p~~~~qa~~l~~~-~--~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.+..+++...+. ........-+++| . ..|.+. . .+|.||+++||+++..+|+++|..
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~e-i-------plL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~ 146 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLE-I-------PLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDG 146 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEEE-c-------hHHHhccccccCCEEEEEECCHHHHHHHHHhcCC
Confidence 123333333331 0000111123333 2 233322 2 278999999999999999999983
No 41
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.44 E-value=8.8e-13 Score=106.25 Aligned_cols=119 Identities=24% Similarity=0.284 Sum_probs=81.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCC-----CC----------------
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VP---------------- 123 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~-----v~---------------- 123 (230)
.|+|+|+|||||||+++.|++ +|+++|++|++.++.+.++......+.+.+..+.+ +.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 389999999999999999988 99999999999999988887777777777644221 11
Q ss_pred --HHHHHHHHHHHHHhccc-cCC-CeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 124 --EDVIFALLSKRLEEGYY-RGE-SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 124 --de~~~~ll~~~l~~~~~-~~~-~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+.++.+.+...+..... ... .-+|+| .|...+.. + ...+|.+|+++||+++..+|+..|..
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive-~plL~e~~--~--~~~~D~vv~V~a~~~~ri~Rl~~Rd~ 144 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLD-IPLLFETG--L--EKLVDRVIVVDAPPEIQIERLMKRDG 144 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEE-ehHhhcCC--c--HHhCCeEEEEECCHHHHHHHHHHcCC
Confidence 12334444433332111 112 334455 33322211 1 12579999999999999999999964
No 42
>PRK13947 shikimate kinase; Provisional
Probab=99.44 E-value=1e-12 Score=104.53 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhccccC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~-~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
.+|+|+|+|||||||+|+.||+.+|+++++.|.++++.. +.+ +.+++. .|.....+....++. .+..
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g~~----~~~~~~~~ge~~~~~~e~~~~~-~l~~----- 69 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--GMT----VAEIFEKDGEVRFRSEEKLLVK-KLAR----- 69 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--CCc----HHHHHHHhChHHHHHHHHHHHH-HHhh-----
Confidence 369999999999999999999999999999998877653 222 222222 122111112222222 2221
Q ss_pred CCeEEEe-C--ccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 143 ESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 143 ~~~~IlD-g--~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
..+.|+. | ++....+...+.+ .+.+|+|+++++++.+|+..|..
T Consensus 70 ~~~~vi~~g~g~vl~~~~~~~l~~---~~~vv~L~~~~~~l~~Rl~~r~~ 116 (171)
T PRK13947 70 LKNLVIATGGGVVLNPENVVQLRK---NGVVICLKARPEVILRRVGKKKS 116 (171)
T ss_pred cCCeEEECCCCCcCCHHHHHHHHh---CCEEEEEECCHHHHHHHhcCCCC
Confidence 2233332 2 3344444444443 35799999999999999987754
No 43
>PRK08233 hypothetical protein; Provisional
Probab=99.43 E-value=7.3e-13 Score=106.14 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=67.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
++..|+|.|+|||||||+|+.|++.++...+...|....... ...+...+..+... +......+...+......
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNC-----PEDICKWIDKGANY-SEWVLTPLIKDIQELIAK 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccC-----chhhhhhhhccCCh-hhhhhHHHHHHHHHHHcC
Confidence 357899999999999999999999996333222222221111 11223333333332 222233333334332111
Q ss_pred CCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
....+|+..+|+.....+ +.. .+|++|+|++|.+++++|+.+|..
T Consensus 76 ~~~~~vivd~~~~~~~~~-~~~--~~d~~i~l~~~~~~~~~R~~~R~~ 120 (182)
T PRK08233 76 SNVDYIIVDYPFAYLNSE-MRQ--FIDVTIFIDTPLDIAMARRILRDF 120 (182)
T ss_pred CCceEEEEeeehhhccHH-HHH--HcCEEEEEcCCHHHHHHHHHHHHh
Confidence 223555555665533322 111 468999999999999999888863
No 44
>PRK13948 shikimate kinase; Provisional
Probab=99.43 E-value=3.6e-12 Score=103.03 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=87.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYY 140 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~-g~~v~de~~~~ll~~~l~~~~~ 140 (230)
++..|+|+|+|||||||+++.|++.+|+++|++|.++++.. +..+.+++.. |...-.+....++...+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~------g~si~~if~~~Ge~~fR~~E~~~l~~l~~---- 78 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT------GKSIPEIFRHLGEAYFRRCEAEVVRRLTR---- 78 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH------hCCHHHHHHHhCHHHHHHHHHHHHHHHHh----
Confidence 56789999999999999999999999999999998887653 3344454432 321111222222222221
Q ss_pred cCCCeEEEe---CccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHH
Q 026951 141 RGESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (230)
Q Consensus 141 ~~~~~~IlD---g~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl 217 (230)
..+.||. |.+....+...+.+. ..+|+|++|.+++.+|+..+. .| . .......+...+.+++|.
T Consensus 79 --~~~~VIa~GgG~v~~~~n~~~l~~~---g~vV~L~~~~e~l~~Rl~~~~-RP-----l--l~~~~~~~~l~~l~~~R~ 145 (182)
T PRK13948 79 --LDYAVISLGGGTFMHEENRRKLLSR---GPVVVLWASPETIYERTRPGD-RP-----L--LQVEDPLGRIRTLLNERE 145 (182)
T ss_pred --cCCeEEECCCcEEcCHHHHHHHHcC---CeEEEEECCHHHHHHHhcCCC-CC-----C--CCCCChHHHHHHHHHHHH
Confidence 1344443 445454444455442 468999999999999994321 11 0 000001122356778888
Q ss_pred HHHHHhhhhhh
Q 026951 218 RIYAEQINLTI 228 (230)
Q Consensus 218 ~~y~~~~~~~i 228 (230)
..|.. ++.+|
T Consensus 146 ~~Y~~-a~~~i 155 (182)
T PRK13948 146 PVYRQ-ATIHV 155 (182)
T ss_pred HHHHh-CCEEE
Confidence 88854 55444
No 45
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.42 E-value=2.9e-12 Score=102.10 Aligned_cols=147 Identities=18% Similarity=0.160 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
..|+|+|+|||||||+++.|++.+|+++++.|.++...... . +.+++..- ..+...+.-...+... . .
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~--~----~~~~~~~~---g~~~~~~~e~~~~~~~--~-~ 70 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNM--T----VAEIVERE---GWAGFRARESAALEAV--T-A 70 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCC--C----HHHHHHHH---CHHHHHHHHHHHHHHh--c-C
Confidence 46899999999999999999999999999999888765421 1 22222111 1111111111222221 1 2
Q ss_pred CeEEEe-C--ccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHHH
Q 026951 144 SGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY 220 (230)
Q Consensus 144 ~~~IlD-g--~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~y 220 (230)
...|+. | ++....+...+.+ .+++|+|++|++++.+|+..|.... ++ ..... ....++..+.+++|.+.|
T Consensus 71 ~~~vi~~ggg~vl~~~~~~~l~~---~~~~v~l~~~~~~~~~Rl~~r~~~~--~r-p~~~~-~~~~~~~~~~~~~r~~~y 143 (171)
T PRK03731 71 PSTVIATGGGIILTEENRHFMRN---NGIVIYLCAPVSVLANRLEANPEED--QR-PTLTG-KPISEEVAEVLAEREALY 143 (171)
T ss_pred CCeEEECCCCccCCHHHHHHHHh---CCEEEEEECCHHHHHHHHccccccc--cC-CcCCC-CChHHHHHHHHHHHHHHH
Confidence 334443 3 3444444444433 4679999999999999998874311 01 00000 001234567888899999
Q ss_pred HHhhhhhhc
Q 026951 221 AEQINLTIS 229 (230)
Q Consensus 221 ~~~~~~~i~ 229 (230)
.+.+.-+|+
T Consensus 144 ~~~a~~~Id 152 (171)
T PRK03731 144 REVAHHIID 152 (171)
T ss_pred HHhCCEEEc
Confidence 886655444
No 46
>PRK04040 adenylate kinase; Provisional
Probab=99.42 E-value=2.1e-12 Score=105.00 Aligned_cols=117 Identities=16% Similarity=0.232 Sum_probs=75.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh--CCCccchhHHHHHHcCCCCh--HHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSA--LYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~--~~~~is~~dll~~~~~~~~~--~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~ 138 (230)
+++|+|+|+|||||||+++.|++++ ++.+++.++++++......- ......+ -.......+..+....+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~----l~~~~~~~~~~~a~~~i~~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRK----LPPEEQKELQREAAERIAEM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhh----CChhhhHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 89999999998766432110 0011111 01111122333444444432
Q ss_pred cccCCCeEEEeCccCCHH--------HHHHHhccCCcCEEEEEecCHHHHHHHHhc
Q 026951 139 YYRGESGFILDGIPRTRI--------QAEILDQIVDVDLVINFKSIEDQLVKRNLE 186 (230)
Q Consensus 139 ~~~~~~~~IlDg~p~~~~--------qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~ 186 (230)
..+..+|+||+..... ....+.. ..||.+|+|.+|++++++|..+
T Consensus 78 --~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~-l~pd~ii~l~a~p~~i~~Rrl~ 130 (188)
T PRK04040 78 --AGEGPVIVDTHATIKTPAGYLPGLPEWVLEE-LNPDVIVLIEADPDEILMRRLR 130 (188)
T ss_pred --hcCCCEEEeeeeeeccCCCCcCCCCHHHHhh-cCCCEEEEEeCCHHHHHHHHhc
Confidence 2345699998642111 2222333 3899999999999999988885
No 47
>PRK07261 topology modulation protein; Provisional
Probab=99.41 E-value=6.5e-13 Score=106.36 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|+|||||||+|+.|++.+++++++.|++.+... ....+.+.....+...+.+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~----------------~~~~~~~~~~~~~~~~~~~------ 58 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN----------------WQERDDDDMIADISNFLLK------ 58 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc----------------cccCCHHHHHHHHHHHHhC------
Confidence 369999999999999999999999999999987654210 0112334445555554443
Q ss_pred CeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
..||+||.+....+...+. ..|.+|+|++|..++..|+.+|..
T Consensus 59 ~~wIidg~~~~~~~~~~l~---~ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 59 HDWIIDGNYSWCLYEERMQ---EADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred CCEEEcCcchhhhHHHHHH---HCCEEEEEcCCHHHHHHHHHHHHH
Confidence 3499999987655444444 358899999999999999998854
No 48
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.41 E-value=2.5e-12 Score=100.35 Aligned_cols=112 Identities=22% Similarity=0.224 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcC-CCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~-~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
++|.|.|+|||||||+|+.||+++|++|||.++++|+... .+-++.+. .++-.+... +...+..+.... ..
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef-~~~AE~~p~-----iD~~iD~rq~e~--a~ 72 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEF-SRYAEEDPE-----IDKEIDRRQKEL--AK 72 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHH-HHHHhcCch-----hhHHHHHHHHHH--HH
Confidence 4689999999999999999999999999999999998654 23232221 222222221 222222222222 11
Q ss_pred CCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 143 ~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
..++|++|. =+-++.. ...|+.|+|++|.++..+|+.+|..
T Consensus 73 ~~nvVlegr-----LA~Wi~k-~~adlkI~L~Apl~vRa~Ria~REg 113 (179)
T COG1102 73 EGNVVLEGR-----LAGWIVR-EYADLKIWLKAPLEVRAERIAKREG 113 (179)
T ss_pred cCCeEEhhh-----hHHHHhc-cccceEEEEeCcHHHHHHHHHHhcC
Confidence 578999864 1122222 4689999999999999999999974
No 49
>PRK13974 thymidylate kinase; Provisional
Probab=99.40 E-value=3e-12 Score=105.86 Aligned_cols=126 Identities=21% Similarity=0.212 Sum_probs=76.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccc--hhHHHHHHcCCCChHHHHHHHHHHC--CCCCCHHHHHHHH--HHH-
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRSALYKQIANAVNE--GKLVPEDVIFALL--SKR- 134 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is--~~dll~~~~~~~~~~~~~i~~~l~~--g~~v~de~~~~ll--~~~- 134 (230)
++..|+|.|++||||||+++.|++.+.-.... ..+.+......+++.|+.|++++.. |...++.....++ .++
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~ 81 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA 81 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999988522110 0011111123467899999999863 3344554433332 122
Q ss_pred ------HHhccccCCCeEEE----------eCccCCHHH--HHHHhcc----CCcCEEEEEecCHHHHHHHHhcCC
Q 026951 135 ------LEEGYYRGESGFIL----------DGIPRTRIQ--AEILDQI----VDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 135 ------l~~~~~~~~~~~Il----------Dg~p~~~~q--a~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+... ...+..+|. +|+|+...+ ...+... ..||++|+|+||++++.+|+.+|.
T Consensus 82 ~~~~~~i~~~-l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~ 156 (212)
T PRK13974 82 QHVSKIIRPA-LENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRK 156 (212)
T ss_pred HHHHHHHHHH-HHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 1111 111333444 466664332 3344322 369999999999999999998874
No 50
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.39 E-value=3.2e-12 Score=102.44 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=85.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~-~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
..+|+|+|++||||||+++.|++.+++++++.|..+.+.... . +..++. .|...--+.-.+++.. +..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~--~----i~~~~~~~g~~~fr~~e~~~l~~-l~~---- 72 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA--D----IGWVFDVEGEEGFRDREEKVINE-LTE---- 72 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCc--C----HhHHHHHhCHHHHHHHHHHHHHH-HHh----
Confidence 457999999999999999999999999999999877654321 1 112221 1111001111223322 222
Q ss_pred CCCeEEEe-C--ccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHH
Q 026951 142 GESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (230)
Q Consensus 142 ~~~~~IlD-g--~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~ 218 (230)
..++|+. | .+.+......|.+ .+.+|+|++|.+++.+|+..+...|.- . .....+.....+.+|..
T Consensus 73 -~~~~vi~~ggg~v~~~~~~~~l~~---~~~vv~L~~~~e~~~~Ri~~~~~rP~~-----~--~~~~~~~~~~l~~~R~~ 141 (172)
T PRK05057 73 -KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQLARTQRDKKRPLL-----Q--VDDPREVLEALANERNP 141 (172)
T ss_pred -CCCEEEEcCCchhCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHhCCCCCCCC-----C--CCCHHHHHHHHHHHHHH
Confidence 2345553 2 2333333344443 367999999999999999865433210 0 00001123556789999
Q ss_pred HHHHhhhhhhc
Q 026951 219 IYAEQINLTIS 229 (230)
Q Consensus 219 ~y~~~~~~~i~ 229 (230)
.|.+.++-+|+
T Consensus 142 ~Y~~~Ad~~id 152 (172)
T PRK05057 142 LYEEIADVTIR 152 (172)
T ss_pred HHHhhCCEEEE
Confidence 99887776654
No 51
>PRK06762 hypothetical protein; Provisional
Probab=99.38 E-value=7.9e-12 Score=99.10 Aligned_cols=112 Identities=19% Similarity=0.199 Sum_probs=73.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh--CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~--~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~ 139 (230)
++..|+|+|+|||||||+|+.|++.+ ++.+++.|.+.+....... ..+ ....+.+..++...+.
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~----------~~~-~~~~~~~~~~~~~~~~--- 66 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKD----------GPG-NLSIDLIEQLVRYGLG--- 66 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccC----------CCC-CcCHHHHHHHHHHHHh---
Confidence 46789999999999999999999998 5667777655443221100 000 1112233333333232
Q ss_pred ccCCCeEEEeCccCCHHHHHHHhc----cCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 140 YRGESGFILDGIPRTRIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 140 ~~~~~~~IlDg~p~~~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.+..+|+|+..........+.. ...+..+|+|++|.+++.+|..+|..
T Consensus 67 --~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~ 118 (166)
T PRK06762 67 --HCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK 118 (166)
T ss_pred --CCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc
Confidence 2567899987555444444432 23467899999999999999999975
No 52
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.38 E-value=1.1e-11 Score=96.71 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=74.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHhcccc
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE---DVIFALLSKRLEEGYYR 141 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~d---e~~~~ll~~~l~~~~~~ 141 (230)
.|+|+|+|||||||+|+.|++.++..+++.|++..... ...+..|...++ +.....+..........
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPAN----------IAKMAAGIPLNDEDRWPWLQALTDALLAKLAS 70 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHH----------HHHHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999887664311 000111111111 11111121111111001
Q ss_pred CCCeEEEeCccCCHHHHHHHhcc--CCcCEEEEEecCHHHHHHHHhcCCCC
Q 026951 142 GESGFILDGIPRTRIQAEILDQI--VDVDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
.+.++|+|...........+..+ .....+|+|++|.+++.+|+..|..+
T Consensus 71 ~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (150)
T cd02021 71 AGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKGH 121 (150)
T ss_pred CCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcccC
Confidence 35678998665666666666665 24556999999999999999999643
No 53
>PRK13946 shikimate kinase; Provisional
Probab=99.38 E-value=1e-11 Score=100.41 Aligned_cols=115 Identities=15% Similarity=0.151 Sum_probs=72.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
.+..|+|+|+|||||||+++.|++.+|+++++.|.++.+... .+..+.+.. .|.....+...+++...+..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g--~~~~e~~~~---~ge~~~~~~e~~~l~~l~~~---- 79 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAAR--MTIAEIFAA---YGEPEFRDLERRVIARLLKG---- 79 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhC--CCHHHHHHH---HCHHHHHHHHHHHHHHHHhc----
Confidence 456799999999999999999999999999999987766532 222222221 12111112223333332222
Q ss_pred CCCeEEEeCc--cCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 142 GESGFILDGI--PRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 142 ~~~~~IlDg~--p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+..+|..|. +........+.. -.++|+|++|.+++.+|+..|..
T Consensus 80 -~~~Vi~~ggg~~~~~~~r~~l~~---~~~~v~L~a~~e~~~~Rl~~r~~ 125 (184)
T PRK13946 80 -GPLVLATGGGAFMNEETRAAIAE---KGISVWLKADLDVLWERVSRRDT 125 (184)
T ss_pred -CCeEEECCCCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHhcCCCC
Confidence 334555542 334444444433 35789999999999999998764
No 54
>PLN02924 thymidylate kinase
Probab=99.38 E-value=3.6e-11 Score=100.07 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=82.5
Q ss_pred cCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHH------
Q 026951 55 SAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF------ 128 (230)
Q Consensus 55 ~~~~~~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~------ 128 (230)
+.+....+++.|+|.|++||||||+++.|++.++...+.+ .+.++ ...++..|+.+++++.++..+......
T Consensus 8 ~~~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~ad 85 (220)
T PLN02924 8 TESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSAN 85 (220)
T ss_pred CCCCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 4444456889999999999999999999999997655544 12222 223577888999988766545443221
Q ss_pred -----HHHHHHHHhccccCCCeEEEeCccCC--HHHH------HHHh----ccCCcCEEEEEecCHHHHHHHHh
Q 026951 129 -----ALLSKRLEEGYYRGESGFILDGIPRT--RIQA------EILD----QIVDVDLVINFKSIEDQLVKRNL 185 (230)
Q Consensus 129 -----~ll~~~l~~~~~~~~~~~IlDg~p~~--~~qa------~~l~----~~~~~d~vI~L~~~~e~l~~Rl~ 185 (230)
..+...+. .+..+|.|.|..+ ..|. +++. ....||++|+|++|++++.+|..
T Consensus 86 R~~~~~~I~pal~-----~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~ 154 (220)
T PLN02924 86 RWEKRSLMERKLK-----SGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG 154 (220)
T ss_pred HHHHHHHHHHHHH-----CCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence 11222222 3667899998764 2221 1122 12369999999999999999964
No 55
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.37 E-value=9.7e-12 Score=98.60 Aligned_cols=113 Identities=22% Similarity=0.220 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCC-CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~-~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
++|+|.|++||||||+|+.|++.+|+++++.+++++..... +.+.. .+........ .+...+...+.... ..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~-----~~~~~~~~~i~~~~-~~ 73 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLI-EFLNYAEENP-----EIDKKIDRRIHEIA-LK 73 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHH-HHHHHHhcCc-----HHHHHHHHHHHHHH-hc
Confidence 36999999999999999999999999999999988765321 11111 1111111111 11222222222211 12
Q ss_pred CCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 143 ~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+.++|+||...... + -..+|++|+|++|.+++.+|+.+|..
T Consensus 74 ~~~~Vi~g~~~~~~----~--~~~~d~~v~v~a~~~~r~~R~~~R~~ 114 (171)
T TIGR02173 74 EKNVVLESRLAGWI----V--REYADVKIWLKAPLEVRARRIAKREG 114 (171)
T ss_pred CCCEEEEeccccee----e--cCCcCEEEEEECCHHHHHHHHHHccC
Confidence 46889998532210 1 12467999999999999999999864
No 56
>PRK13975 thymidylate kinase; Provisional
Probab=99.37 E-value=3.8e-11 Score=97.59 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=71.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHH-HHH------H
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL-SKR------L 135 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll-~~~------l 135 (230)
++.|+|.|++||||||+++.|+++++..+.. ...++..++.+++++..+ .+.+..+.-++ ..+ +
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~--------~~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i 72 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTC--------EPTDGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEI 72 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeE--------CCCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999853211 122344566677766544 22322211111 111 1
Q ss_pred HhccccCCCeEEEeCccCCH--HH---------HHHHhc-cCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 136 EEGYYRGESGFILDGIPRTR--IQ---------AEILDQ-IVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 136 ~~~~~~~~~~~IlDg~p~~~--~q---------a~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+... ....+|+|+++.+. .| ...+.. ...||++|+|++|++++.+|+.+|.
T Consensus 73 ~~~~--~~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 73 EEDL--KKRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred HHHH--cCCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence 1111 13568999876541 11 111211 2468999999999999999999886
No 57
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.37 E-value=1.3e-11 Score=101.32 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCH-------------------
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE------------------- 124 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~d------------------- 124 (230)
..|.|+|++||||||+|+.|++ +|+++|++|++.++.+.++++..+.+.+.+..+.+.++
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4699999999999999999986 89999999999999999888888888888766544332
Q ss_pred ----HHHHHHHHHHHHhcc---ccCC-CeEEEeCccCCHHHHHHHhcc-CCcCEEEEEecCHHHHHHHHhcCC
Q 026951 125 ----DVIFALLSKRLEEGY---YRGE-SGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 125 ----e~~~~ll~~~l~~~~---~~~~-~~~IlDg~p~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
.++++.+...+.... ...+ ..++++ .|.-.+. .+ ..+|.+|+++||.++..+|+.+|+
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e-~plL~e~-----g~~~~~D~vi~V~a~~e~ri~Rl~~R~ 147 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYD-MPLLVEK-----GLDRKMDLVVVVDVDVEERVRRLVEKR 147 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEE-eeceeEc-----CccccCCeEEEEECCHHHHHHHHHHcC
Confidence 112222222221110 0112 233443 2221110 11 257999999999999999999985
No 58
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.36 E-value=3.2e-12 Score=104.58 Aligned_cols=122 Identities=10% Similarity=0.080 Sum_probs=75.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHH-HHHHHHHHCCCCCCH----HH----------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALY-KQIANAVNEGKLVPE----DV---------- 126 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~-~~i~~~l~~g~~v~d----e~---------- 126 (230)
.+..|++.|+|||||||+|+.|++.+|+.++..+|++++.+......+ ......+..++.+++ .+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 456899999999999999999999999999999999998765322211 001111111111221 11
Q ss_pred ----HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEec-CHHHHHHHHhcCCCC
Q 026951 127 ----IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKS-IEDQLVKRNLESEAF 190 (230)
Q Consensus 127 ----~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~-~~e~l~~Rl~~R~~~ 190 (230)
+..++...+. .+..+|+||............. .. ..++++.+ +++.+.+|+..|...
T Consensus 82 v~~~L~~va~~~l~-----~G~sVIvEgv~l~p~~~~~~~~-~~-v~~i~l~v~d~e~lr~Rl~~R~~~ 143 (197)
T PRK12339 82 IMPGINRVIRRALL-----NGEDLVIESLYFHPPMIDENRT-NN-IRAFYLYIRDAELHRSRLADRINY 143 (197)
T ss_pred HHHHHHHHHHHHHH-----cCCCEEEEecCcCHHHHHHHHh-cC-eEEEEEEeCCHHHHHHHHHHHhhc
Confidence 1222222233 3788999987665554432211 12 34666665 578888999999854
No 59
>PLN02422 dephospho-CoA kinase
Probab=99.36 E-value=1.5e-11 Score=102.88 Aligned_cols=119 Identities=17% Similarity=0.166 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCC-----CCH--------------
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL-----VPE-------------- 124 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~-----v~d-------------- 124 (230)
..|+|+|++||||||+++.|+ ++|+++|++|++.++.+.++++....+.+.+..+.+ ++.
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 369999999999999999998 689999999999999998887766677766533221 211
Q ss_pred ----HHHHHHHHHHHHh----ccccCCCeEEEeCccCCHHHHHHHhcc-CCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 125 ----DVIFALLSKRLEE----GYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 125 ----e~~~~ll~~~l~~----~~~~~~~~~IlDg~p~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+++++.+...+.. ........+|+| .|.-.+. .+ ..+|.||+++||+++..+|+.+|+.
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E~-----~~~~~~D~vI~V~a~~e~ri~RL~~R~g 148 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFET-----KMDKWTKPVVVVWVDPETQLERLMARDG 148 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhhc-----chhhhCCEEEEEECCHHHHHHHHHHcCC
Confidence 2333333333321 100112345555 3332210 11 2579999999999999999999964
No 60
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.36 E-value=6.4e-12 Score=117.29 Aligned_cols=151 Identities=16% Similarity=0.201 Sum_probs=95.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhc
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEG 138 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~-~g~~v~de~~~~ll~~~l~~~ 138 (230)
|.|..+|+|+|+|||||||+++.||+.+|+++|++|+++.+.. +..|.+++. .|.....+.-.+++...+..
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~~~- 75 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADMLED- 75 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 5678899999999999999999999999999999999988754 344566553 33322222333333322221
Q ss_pred cccCCCeEEEe--CccCCHHHHHHHhcc-CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHH
Q 026951 139 YYRGESGFILD--GIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKE 215 (230)
Q Consensus 139 ~~~~~~~~IlD--g~p~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~ 215 (230)
...+|-. |.+........|.++ ..-..||+|+++.+++.+|+..+...| .-. ....+...+.+++
T Consensus 76 ----~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RP-----ll~---~~~~~~~~~l~~~ 143 (542)
T PRK14021 76 ----FDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRP-----MLN---GDANKRWKKLFKQ 143 (542)
T ss_pred ----CCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCC-----CCC---CCcHHHHHHHHHH
Confidence 2233323 344454444444332 122479999999999999997543222 100 0011234677889
Q ss_pred HHHHHHHhhhhhhc
Q 026951 216 KFRIYAEQINLTIS 229 (230)
Q Consensus 216 rl~~y~~~~~~~i~ 229 (230)
|...|++.++-+++
T Consensus 144 R~~~Y~~~Ad~~i~ 157 (542)
T PRK14021 144 RDPVFRQVANVHVH 157 (542)
T ss_pred HHHHHHhhCCEEEE
Confidence 99999987766553
No 61
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.34 E-value=1.4e-11 Score=97.74 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=69.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
.+..|+|+|+|||||||+|+.|++.+|+++++.|+++++.... +....+.+ .|.....+....++......
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~--~~~~~~~~---~g~~~~~~~~~~~~~~l~~~---- 73 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGK--SIPEIFEE---EGEAAFRELEEEVLAELLAR---- 73 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--CHHHHHHH---HCHHHHHHHHHHHHHHHHhc----
Confidence 5678999999999999999999999999999999988765432 22211111 11111111222223222221
Q ss_pred CCCeEEEeC--ccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 142 GESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 142 ~~~~~IlDg--~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
...+|..| +.........+. ....+|+|++|.+.+.+|+..|.
T Consensus 74 -~~~vi~~g~~~~~~~~~r~~l~---~~~~~v~l~~~~~~~~~R~~~~~ 118 (175)
T PRK00131 74 -HNLVISTGGGAVLREENRALLR---ERGTVVYLDASFEELLRRLRRDR 118 (175)
T ss_pred -CCCEEEeCCCEeecHHHHHHHH---hCCEEEEEECCHHHHHHHhcCCC
Confidence 22344433 222222233332 23579999999999999998765
No 62
>PRK04182 cytidylate kinase; Provisional
Probab=99.34 E-value=6.3e-12 Score=100.43 Aligned_cols=113 Identities=24% Similarity=0.241 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCC-CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~-~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
++|+|+|+|||||||+|+.|++.+|+++++++++++..... +.... .+.+ .+...+. +...+...+.... ..
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~-~~~~---~~~~~~~--~~~~~~~~~~~~~-~~ 73 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLE-EFNK---YAEEDPE--IDKEIDRRQLEIA-EK 73 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHH-HHHH---HhhcCch--HHHHHHHHHHHHH-hc
Confidence 36999999999999999999999999999999988875431 22211 1111 1221121 1111222222110 12
Q ss_pred CCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 143 ESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 143 ~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+.++|+||.-... .+. ..++++|+|++|.+++.+|+..|..
T Consensus 74 ~~~~Vi~g~~~~~----~~~--~~~~~~V~l~a~~e~~~~Rl~~r~~ 114 (180)
T PRK04182 74 EDNVVLEGRLAGW----MAK--DYADLKIWLKAPLEVRAERIAEREG 114 (180)
T ss_pred CCCEEEEEeecce----Eec--CCCCEEEEEECCHHHHHHHHHhccC
Confidence 4678998742111 011 1268999999999999999998863
No 63
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.33 E-value=2.8e-11 Score=101.97 Aligned_cols=119 Identities=14% Similarity=0.111 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCC-----CCCCH--------------
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPE-------------- 124 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g-----~~v~d-------------- 124 (230)
..|.|+|++||||||+++.|.+++|++.|++|.+.++.+.++.+..+.+.+.+... ..++.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 57999999999999999999988999999999999999988887777776655321 11211
Q ss_pred ----HHHHHHHHHHHHhcc-----------c--cCCCeEEEeCccCCHHHHHHHhc-c--CCcCEEEEEecCHHHHHHHH
Q 026951 125 ----DVIFALLSKRLEEGY-----------Y--RGESGFILDGIPRTRIQAEILDQ-I--VDVDLVINFKSIEDQLVKRN 184 (230)
Q Consensus 125 ----e~~~~ll~~~l~~~~-----------~--~~~~~~IlDg~p~~~~qa~~l~~-~--~~~d~vI~L~~~~e~l~~Rl 184 (230)
.++++.+...+.+.. . .+..-+|+| .|.- ++. + ..+|.+|++.||.++..+|+
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e-vPLL------~E~~~~~~~~D~iv~V~a~~e~ri~RL 154 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD-APTL------FETKTFTYFVSASVVVSCSEERQIERL 154 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE-echh------hccCchhhcCCeEEEEECCHHHHHHHH
Confidence 122222222221100 0 112245666 2322 221 1 14699999999999999999
Q ss_pred hcCCC
Q 026951 185 LESEA 189 (230)
Q Consensus 185 ~~R~~ 189 (230)
..|+.
T Consensus 155 ~~R~g 159 (244)
T PTZ00451 155 RKRNG 159 (244)
T ss_pred HHcCC
Confidence 99964
No 64
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.33 E-value=4.3e-11 Score=97.71 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=72.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHC--CCCCCHHHHHHHHHHH-----
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE--GKLVPEDVIFALLSKR----- 134 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~--g~~v~de~~~~ll~~~----- 134 (230)
+++.|+|.|++||||||+++.|++.++.....+ .+..+ ..++..++.+.+.+.. ....+.....-.+..+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~--~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 78 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDV--VFTRE-PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLE 78 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCce--eEeeC-CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999873211110 01011 1234567777777663 2222222111111111
Q ss_pred --HHhccccCCCeEEEeCccCCH------------HHHHHHhc----cCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 135 --LEEGYYRGESGFILDGIPRTR------------IQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 135 --l~~~~~~~~~~~IlDg~p~~~------------~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+.... ..+..+|+|.++.+. .....+.. ...||++|+|++|++++.+|+.+|+.
T Consensus 79 ~~i~~~l-~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~ 150 (205)
T PRK00698 79 EVIKPAL-ARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGE 150 (205)
T ss_pred HHHHHHH-HCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 11110 225678999766442 11112221 14699999999999999999999973
No 65
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.32 E-value=7.6e-12 Score=101.45 Aligned_cols=119 Identities=19% Similarity=0.212 Sum_probs=77.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHC-----CCCCCH---------------
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-----GKLVPE--------------- 124 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~-----g~~v~d--------------- 124 (230)
.|+|+|++||||||+++.|++..++++|++|++.++.+.++.+....+.+.+.. ...+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 389999999999999999998878999999999999998877766666655431 111111
Q ss_pred ---HHHHHHH----HHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 125 ---DVIFALL----SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 125 ---e~~~~ll----~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.++.+.+ .+.+.+.. ..+..+|++ .|..... .+. ..+|.+|++++|.+++.+|+..|..
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~-~~~~~vvi~-~pll~e~--~~~--~~~D~vv~V~~~~~~~~~Rl~~R~~ 146 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQ-SKLAYVLLD-VPLLFEN--KLR--SLCDRVIVVDVSPQLQLERLMQRDN 146 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhh-cCCCEEEEE-chHhhhC--CcH--HhCCEEEEEECCHHHHHHHHHHcCC
Confidence 1222222 22222211 112234444 4433221 011 2578999999999999999999973
No 66
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.32 E-value=2.3e-11 Score=99.95 Aligned_cols=125 Identities=15% Similarity=0.172 Sum_probs=79.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCC----CCCH-------------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK----LVPE------------- 124 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~----~v~d------------- 124 (230)
.+..|.|+|++||||||+++.|++.+|++++++|.+.++.+.+ .+....+.+.+..+. .++.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA 83 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence 5678999999999999999999999999999999999988765 344444544433221 1211
Q ss_pred -----HHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCC
Q 026951 125 -----DVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 125 -----e~~~~ll~~~l~~~~~-~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
+++++.+...+.+... ....-+++| .|.-.+.. +.....+|.+|+++||+++..+|++.|...
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~e-ipLL~E~~--~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~ 152 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQVKESDTVMTIVD-IPLLGPYN--FRHYDYLKKVIVIKADLETRIRRLMERDGK 152 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCeEEEE-echhhhcc--CchhhhCCEEEEEECCHHHHHHHHHHcCCC
Confidence 2334444433322111 112345566 23322110 000124789999999999999999999653
No 67
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.32 E-value=1.1e-11 Score=99.91 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCC-----CCCH--------------
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPE-------------- 124 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~-----~v~d-------------- 124 (230)
+.|.|+|+.||||||+++.|++ +|+++|++|.+.++.+.++.+....+.+.+.... .+..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4699999999999999999987 9999999999999999988888888877665332 1221
Q ss_pred ----HHHHHHHHHHHHhccc--cCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 125 ----DVIFALLSKRLEEGYY--RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 125 ----e~~~~ll~~~l~~~~~--~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.++++++...+..... .....+|+| .|.-.+. .+. ..+|.||++.||.++..+|+++|+.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e-~pLL~E~--~~~--~~~D~vi~V~a~~e~ri~Rl~~R~~ 145 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVE-IPLLFES--GLE--KLCDEVIVVYAPEEIRIKRLMERDG 145 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE--TTTTTT--TGG--GGSSEEEEEE--HHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEE-cchhhhh--hHh--hhhceEEEEECCHHHHHHHHHhhCC
Confidence 2334444433332111 112456666 3332211 111 2579999999999999999999953
No 68
>PLN02199 shikimate kinase
Probab=99.31 E-value=3.3e-11 Score=103.45 Aligned_cols=149 Identities=17% Similarity=0.183 Sum_probs=88.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYY 140 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~-~g~~v~de~~~~ll~~~l~~~~~ 140 (230)
++..|+|+|++||||||+++.|++.+|+++|++|.++++... + ..+.+++. .|...-.+...+++.. +..
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G----~sI~eIf~~~GE~~FR~~E~e~L~~-L~~--- 171 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-G----TSVAEIFVHHGENFFRGKETDALKK-LSS--- 171 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-C----CCHHHHHHHhCHHHHHHHHHHHHHH-HHh---
Confidence 466899999999999999999999999999999999988632 2 23444443 2332222222333332 221
Q ss_pred cCCCeEEEe---CccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCC----CCCCcHHHH
Q 026951 141 RGESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF----SAADAASAW 213 (230)
Q Consensus 141 ~~~~~~IlD---g~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~----~~dd~~~~~ 213 (230)
..+.||. |.+........+. -..||+|++|.+++.+|+...... .|.--....+. ..+...+.+
T Consensus 172 --~~~~VIStGGG~V~~~~n~~~L~----~G~vV~Ldas~E~l~~RL~~~~~~---~RPLL~~~~~d~~~~~~~~L~~L~ 242 (303)
T PLN02199 172 --RYQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAAVGTD---SRPLLHDESGDAYSVAFKRLSAIW 242 (303)
T ss_pred --cCCEEEECCCcccCCHHHHHHHh----CCeEEEEECCHHHHHHHHhhcCCC---CCCcCCCCCcchhhhHHHHHHHHH
Confidence 1244443 2333333333333 146999999999999999852110 01000000000 001235778
Q ss_pred HHHHHHHHHhhhhhhc
Q 026951 214 KEKFRIYAEQINLTIS 229 (230)
Q Consensus 214 ~~rl~~y~~~~~~~i~ 229 (230)
++|...|.+ ++.+|+
T Consensus 243 ~~R~plY~~-Ad~~V~ 257 (303)
T PLN02199 243 DERGEAYTN-ANARVS 257 (303)
T ss_pred HHHHHHHHh-CCEEEe
Confidence 999999998 766554
No 69
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.31 E-value=3.4e-11 Score=99.34 Aligned_cols=122 Identities=10% Similarity=0.118 Sum_probs=77.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHC--------CC-CCCH--------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE--------GK-LVPE-------- 124 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~--------g~-~v~d-------- 124 (230)
.+..|.|+|++||||||+++.|++ +|++.+++|.+.++.+.++......+...+.. |. .+..
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 457899999999999999999985 99999999999998877766544444444321 11 0211
Q ss_pred ----------HHHHHHHHHHH----HhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 125 ----------DVIFALLSKRL----EEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 125 ----------e~~~~ll~~~l----~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.++++.+...+ .... ..+..+++-+.|.-.+.. ....+|.+|++.+|++++.+|+.+|+.
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~-~~~~~vvv~e~pLL~e~~----~~~~~d~ii~V~a~~e~~~~Rl~~R~~ 156 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAA-RRGKRILVKEAAILFESG----GDAGLDFIVVVAADTELRLERAVQRGM 156 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHH-hcCCCEEEEEeeeeeecC----chhcCCeEEEEECCHHHHHHHHHHcCC
Confidence 12222222222 2211 112345554444322210 012579999999999999999999975
No 70
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.29 E-value=3.8e-11 Score=97.47 Aligned_cols=120 Identities=16% Similarity=0.111 Sum_probs=70.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC---CccchhHHHHHHcCCCChHHHHHHHHHHCCC--CCCHHHHH--------H
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNEGK--LVPEDVIF--------A 129 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~---~~is~~dll~~~~~~~~~~~~~i~~~l~~g~--~v~de~~~--------~ 129 (230)
++.|+|.|+|||||||+++.|++.++. .++-+ ....+++.++.+++++..+. ...+.... .
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~ 76 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT------REPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE 76 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE------eCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 688999999999999999999998853 22211 11123456666666644322 12221110 1
Q ss_pred HHHHHHHhccccCCCeEEEeCccCCH------------HHHHHHh-ccCC--cCEEEEEecCHHHHHHHHhcCCC
Q 026951 130 LLSKRLEEGYYRGESGFILDGIPRTR------------IQAEILD-QIVD--VDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 130 ll~~~l~~~~~~~~~~~IlDg~p~~~------------~qa~~l~-~~~~--~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.+...+.... ..+..+|+|.+..+. .+...+. .+.. ||++|+|++|++++.+|+..|..
T Consensus 77 ~~~~~i~~~l-~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~ 150 (195)
T TIGR00041 77 HLEDKIKPAL-AEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGE 150 (195)
T ss_pred HHHHHHHHHH-hCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 1111122110 124567889654331 1112222 2233 99999999999999999999864
No 71
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.27 E-value=1e-10 Score=92.38 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=65.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCH----HHH---HHHHHHHHHhc
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPE----DVI---FALLSKRLEEG 138 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~d----e~~---~~ll~~~l~~~ 138 (230)
|+|+|+|||||||+++.|++.++..+++.|++..... +.. ...|....+ +.. .+.+...+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 69 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAAN---------IEK-MSAGIPLNDDDRWPWLQNLNDASTAAAAK- 69 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHH---------HHH-HHcCCCCChhhHHHHHHHHHHHHHHHHhc-
Confidence 5789999999999999999999999999988642210 000 000111111 111 1122222222
Q ss_pred cccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 139 YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 139 ~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+...|+|...........+........+|+|++|.+++.+|+..|..
T Consensus 70 ----~~~~Vi~~t~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 116 (163)
T TIGR01313 70 ----NKVGIITCSALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKG 116 (163)
T ss_pred ----CCCEEEEecccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccC
Confidence 23335554333344445555443333479999999999999999974
No 72
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.24 E-value=1.3e-10 Score=101.44 Aligned_cols=120 Identities=16% Similarity=0.187 Sum_probs=72.1
Q ss_pred CCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH
Q 026951 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLE 136 (230)
Q Consensus 58 ~~~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~-~g~~v~de~~~~ll~~~l~ 136 (230)
..+.++..|+|+|+|||||||+++.|++.+|+++|++|..+.+... .+ +.+++. .|.....+...+.+...+.
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G--~~----i~ei~~~~G~~~fr~~e~~~l~~ll~ 201 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG--LS----VSEIFALYGQEGYRRLERRALERLIA 201 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC--CC----HHHHHHHHCHHHHHHHHHHHHHHHHh
Confidence 3455777999999999999999999999999999999877766532 12 222221 1211111222233333232
Q ss_pred hccccCCCeEEE-eCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 137 EGYYRGESGFIL-DGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 137 ~~~~~~~~~~Il-Dg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
. ...+|| .|.. .......+..+....++|+|++|.+++.+|+.+|..
T Consensus 202 ~-----~~~~VI~~Ggg-~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~ 249 (309)
T PRK08154 202 E-----HEEMVLATGGG-IVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGD 249 (309)
T ss_pred h-----CCCEEEECCCc-hhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCC
Confidence 2 223444 3321 111111122222235799999999999999998753
No 73
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.23 E-value=5.3e-10 Score=90.33 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHHHcCCCChHHHHHHHHHHCCC---CCCHHHH-H------HH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGK---LVPEDVI-F------AL 130 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~---~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~---~v~de~~-~------~l 130 (230)
+.|+|.|++||||||+++.|++.+ |..++.... ...+..++.+++++..+. ..+.... . ..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 469999999999999999999988 554443321 112234556666555432 1111110 0 01
Q ss_pred HHHHHHhccccCCCeEEEeCccCCH------------HHHHHHh----ccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 131 LSKRLEEGYYRGESGFILDGIPRTR------------IQAEILD----QIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 131 l~~~l~~~~~~~~~~~IlDg~p~~~------------~qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+...+... ...+..+|+|.++.+. .+...+. ....||++|+|++|++++.+|+.+|..
T Consensus 75 ~~~~~~~~-~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 148 (200)
T cd01672 75 VEEVIKPA-LARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGR 148 (200)
T ss_pred HHHHHHHH-HhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 11111110 1236788999766441 1222222 123689999999999999999999875
No 74
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.23 E-value=3.3e-12 Score=95.75 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=61.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc-ccCC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-YRGE 143 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~-~~~~ 143 (230)
+|+|.|+|||||||+|+.|++.+|++++++|++++...... ...+..-......+.+...+.... ....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIE----------RDDDEREYIDADIDLLDDILEQLQNKPDN 70 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCH----------GCTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccc----------cCcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence 58999999999999999999999999999999543221100 000010001112222333332210 1235
Q ss_pred CeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 144 SGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
..||+||.-. .. ..+ .....+.+|++.++.+++.+|+.+|.
T Consensus 71 ~~~ii~g~~~-~~--~~~-~~~~~~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 71 DNWIIDGSYE-SE--MEI-RLPEFDHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp -EEEEECCSC-HC--CHS-CCHHGGCEEEEEEEEHHHHHHHHHHH
T ss_pred CeEEEeCCCc-cc--hhh-hhhcCCEEEEEECCCHHHHHHHHHHH
Confidence 7899999311 11 011 22234678999988885666665553
No 75
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.22 E-value=2.9e-11 Score=93.35 Aligned_cols=103 Identities=22% Similarity=0.264 Sum_probs=64.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCCC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~~ 144 (230)
+|+|.|+|||||||+|+.|++.+|+++++.+.+..+.. ......... ...+...+...+.+. ....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~------~~~~~~~~~------~~~i~~~l~~~~~~~--~~~~ 66 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV------GKLASEVAA------IPEVRKALDERQREL--AKKP 66 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH------HHHHHHhcc------cHhHHHHHHHHHHHH--hhCC
Confidence 38999999999999999999999999999984332211 111111000 011112222222221 1245
Q ss_pred eEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcC
Q 026951 145 GFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (230)
Q Consensus 145 ~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (230)
.||+||...... .....+++|+|++|++...+|+.+|
T Consensus 67 ~~Vidg~~~~~~------~~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 67 GIVLEGRDIGTV------VFPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred CEEEEeeeeeeE------EcCCCCEEEEEECCHHHHHHHHHHH
Confidence 799998643111 1134689999999999999999985
No 76
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.22 E-value=3.1e-10 Score=93.48 Aligned_cols=125 Identities=18% Similarity=0.187 Sum_probs=81.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCC-CCCCHHHHHHH--------HH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-KLVPEDVIFAL--------LS 132 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g-~~v~de~~~~l--------l~ 132 (230)
+++.|+|.|..||||||+++.|++.+.-..+.+ +...-+.+++.++.|++++.++ ..+......-+ +.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v---~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV---VLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE---EEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999998774332211 1112245688999999998876 33433322111 11
Q ss_pred HHHHhccccCCCeEEEeCccCC--HHHH----------HHHhcc-C---CcCEEEEEecCHHHHHHHHhcCCCC
Q 026951 133 KRLEEGYYRGESGFILDGIPRT--RIQA----------EILDQI-V---DVDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 133 ~~l~~~~~~~~~~~IlDg~p~~--~~qa----------~~l~~~-~---~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
+.+... ...+..+|.|.|-.+ ..|. ..+.++ . .||++|+|++|+++.++|+.+|+..
T Consensus 79 ~~i~pa-l~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~ 151 (208)
T COG0125 79 EVIKPA-LKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL 151 (208)
T ss_pred HHHHHh-hcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 112211 123567888987644 3332 112122 2 6899999999999999999999764
No 77
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.21 E-value=7.9e-11 Score=96.33 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=78.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCC-----CCC-----------------
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVP----------------- 123 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~-----~v~----------------- 123 (230)
|.|+|++||||||+++.|+ .+|+.+|+.|++.++.+.++.+..+.+.+.+..+. .+.
T Consensus 2 i~itG~~gsGKst~~~~l~-~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~ 80 (196)
T PRK14732 2 IGITGMIGGGKSTALKILE-ELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA 80 (196)
T ss_pred EEEECCCCccHHHHHHHHH-HCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence 7899999999999999886 57999999999999988888777777776553321 111
Q ss_pred -HHHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 124 -EDVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 124 -de~~~~ll~~~l~~~~~-~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
++++++.+...+..... .....+++-..|.-.+.. ....+|.+|++++|+++..+|+..|..
T Consensus 81 L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~----~~~~~D~vi~V~a~~e~r~~RL~~R~g 144 (196)
T PRK14732 81 LNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETD----AYTLCDATVTVDSDPEESILRTISRDG 144 (196)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcC----chhhCCEEEEEECCHHHHHHHHHHcCC
Confidence 12333333333321110 111234443344432210 012469999999999999999999964
No 78
>PRK06547 hypothetical protein; Provisional
Probab=99.21 E-value=4.1e-11 Score=96.05 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=72.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHhc-
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIAN-AVNEGKLVPEDVIFALLSKRLEEG- 138 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~-~l~~g~~v~de~~~~ll~~~l~~~- 138 (230)
.++..|+|.|++||||||+|+.|++.++++++++|++....... ....+.+.. ++..|....-. ...........
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~-~~~~~~l~~~~l~~g~~~~~~--yd~~~~~~~~~~ 89 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGL-AAASEHVAEAVLDEGRPGRWR--WDWANNRPGDWV 89 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccC-ChHHHHHHHHHHhCCCCceec--CCCCCCCCCCcE
Confidence 46788999999999999999999999999999999876532111 111122222 22233211000 00000000000
Q ss_pred cccCCCeEEEeCccCCHHH-HHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 139 YYRGESGFILDGIPRTRIQ-AEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 139 ~~~~~~~~IlDg~p~~~~q-a~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.......+|++|......+ ...+++ ...-++|+|++|.+++.+|+..|..
T Consensus 90 ~l~~~~vVIvEG~~al~~~~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd~ 140 (172)
T PRK06547 90 SVEPGRRLIIEGVGSLTAANVALASL-LGEVLTVWLDGPEALRKERALARDP 140 (172)
T ss_pred EeCCCCeEEEEehhhccHHHHHHhcc-CCCEEEEEEECCHHHHHHHHHhcCc
Confidence 0012456888986333222 122222 1223899999999999999999975
No 79
>PRK13976 thymidylate kinase; Provisional
Probab=99.19 E-value=6.9e-10 Score=91.66 Aligned_cols=118 Identities=12% Similarity=0.007 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHH------------HH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI------------FA 129 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~--~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~------------~~ 129 (230)
+.|+|.|..||||||+++.|++.|.-. ...+- +. ..+.++..++.|++++.....+..... .+
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~-~~--~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~ 77 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVV-LT--REPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVK 77 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceE-Ee--eCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999887421 11110 01 113456788888887764222322211 11
Q ss_pred HHHHHHHhccccCCCeEEEeCccCCH--HH----------HHHHhcc---CCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 130 LLSKRLEEGYYRGESGFILDGIPRTR--IQ----------AEILDQI---VDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 130 ll~~~l~~~~~~~~~~~IlDg~p~~~--~q----------a~~l~~~---~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.+...+. .+..+|.|.|..+. .| ...+..+ ..||++|+|++|+++..+|+..++.
T Consensus 78 ~I~p~l~-----~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~ 147 (209)
T PRK13976 78 VILPALL-----QGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGY 147 (209)
T ss_pred HHHHHHH-----CCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccch
Confidence 2222222 25678889887551 11 1222221 2699999999999999999966543
No 80
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.19 E-value=9e-11 Score=105.66 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCC-----CCCH--------------
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPE-------------- 124 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~-----~v~d-------------- 124 (230)
.+|.|+|++||||||+|+.|++ +|+++|++|.+.++.+.++......+.+.+..+. .+..
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4699999999999999999986 8999999999999998877665555665553321 1111
Q ss_pred ----HHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 125 ----DVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 125 ----e~~~~ll~~~l~~~~~-~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
.++.+.+..++.+... ..+..+|+.+.|.-.+.. + ...+|.+|++++|.++..+|+..|+
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~--~--~~~~D~iI~V~ap~e~ri~Rl~~rR 145 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVESG--M--APLFHLVVVVDADVEVRVRRLVEQR 145 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecCC--c--hhhCCEEEEEECCHHHHHHHHHhcC
Confidence 1223333332322111 123457676665433211 0 1256899999999999999999854
No 81
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.19 E-value=4.8e-10 Score=94.81 Aligned_cols=109 Identities=23% Similarity=0.322 Sum_probs=69.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~ 139 (230)
.|+|+|+|||||||+|+.|++.++ +.+++. |.+++..... .......+ .+.....+...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~---~~~~e~~~-------~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVW---KEKYEEFI-------RDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHh---hHHhHHHH-------HHHHHHHHHHHHhC--
Confidence 389999999999999999998873 345554 4455433110 01111111 12233344444443
Q ss_pred ccCCCeEEEeCccCCHHHHHHHh----ccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 140 YRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 140 ~~~~~~~IlDg~p~~~~qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+..+|+|+.+........+. ....+..+|+|++|.+++.+|...|..
T Consensus 68 ---~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~ 118 (249)
T TIGR03574 68 ---KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE 118 (249)
T ss_pred ---CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC
Confidence 45799999776655544332 234567799999999999999998864
No 82
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.16 E-value=9.6e-10 Score=88.10 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=68.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHHHcCCCChHHHHHHHHHHC-CCCCCHHH-------HHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDV-------IFALLS 132 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~--~is~~dll~~~~~~~~~~~~~i~~~l~~-g~~v~de~-------~~~ll~ 132 (230)
+.+|+|.|+|||||||+|+.|++.++.+ +++.|++..............+. +.. +...+.+. ....+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~y~~~~~~~~ 79 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIE--FDGDGGVSPGPEFRLLEGAWYEAVA 79 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccc--cCccCCcccchHHHHHHHHHHHHHH
Confidence 4579999999999999999999988654 55777665432110000000000 000 01112111 122222
Q ss_pred HHHHhccccCCCeEEEeCccC-CHHHHHHHhccC-CcCEEEEEecCHHHHHHHHhcCCC
Q 026951 133 KRLEEGYYRGESGFILDGIPR-TRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 133 ~~l~~~~~~~~~~~IlDg~p~-~~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
..+. .+..+|+|.... .....+.+..+. .+-..|+|+||.+++.+|+.+|..
T Consensus 80 ~~l~-----~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~ 133 (175)
T cd00227 80 AMAR-----AGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGD 133 (175)
T ss_pred HHHh-----CCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCC
Confidence 2222 378899996432 223233333332 345699999999999999999873
No 83
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.14 E-value=4e-10 Score=103.94 Aligned_cols=133 Identities=16% Similarity=0.276 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhccccC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~-~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
++|+|+|+|||||||+++.|++.+|++++++|+++.+... ..+.+++. .|.....+.-.+.+++....
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g------~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~----- 69 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREG------RSVRRIFEEDGEEYFRLKEKELLRELVER----- 69 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcC------CCHHHHHHHhhhHHHHHHHHHHHHHHhhc-----
Confidence 3699999999999999999999999999999999877422 22333332 22211122222233322211
Q ss_pred CCeEEE-eC--ccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHH
Q 026951 143 ESGFIL-DG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRI 219 (230)
Q Consensus 143 ~~~~Il-Dg--~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~ 219 (230)
...|+ .| .+.+..+.+.|.+ +.+|+|++|.+++.+|+..++. +. . . . ..+...+.+++|...
T Consensus 70 -~~~Vis~Gggvv~~~~~r~~l~~----~~vI~L~as~e~l~~Rl~~~~R-PL------l-~-~-~~e~l~~L~~~R~~l 134 (488)
T PRK13951 70 -DNVVVATGGGVVIDPENRELLKK----EKTLFLYAPPEVLMERVTTENR-PL------L-R-E-GKERIREIWERRKQF 134 (488)
T ss_pred -CCEEEECCCccccChHHHHHHhc----CeEEEEECCHHHHHHHhccCCC-CC------c-c-c-cHHHHHHHHHHHHHH
Confidence 22333 32 2333344444543 3599999999999999976532 10 0 0 0 012344567778888
Q ss_pred HHH
Q 026951 220 YAE 222 (230)
Q Consensus 220 y~~ 222 (230)
|.+
T Consensus 135 Y~~ 137 (488)
T PRK13951 135 YTE 137 (488)
T ss_pred Hhc
Confidence 865
No 84
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.13 E-value=7.8e-10 Score=89.74 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=65.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---c--
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG---Y-- 139 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~---~-- 139 (230)
.|+|.|++||||||+++.|++.+++.++.-.. .. ...... .+..++.+.....-.....++..+.... .
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~--~~-~~~~~~---~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~ 74 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPV--EP-DVEGNP---FLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEH 74 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccc--cc-cCCCCC---CHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 38999999999999999999988875543211 00 000111 1222221110000001111111111110 0
Q ss_pred ccCCCeEEEeCccCCHH--------H-------HH----HHh----ccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 140 YRGESGFILDGIPRTRI--------Q-------AE----ILD----QIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 140 ~~~~~~~IlDg~p~~~~--------q-------a~----~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
...+..+|+|.+|.+.. + .. ++. ....||++|+|+++++++.+|+.+|..
T Consensus 75 ~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~r 147 (193)
T cd01673 75 LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGR 147 (193)
T ss_pred cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcCc
Confidence 12467899999886521 1 00 111 123699999999999999999998864
No 85
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.13 E-value=1.6e-10 Score=93.47 Aligned_cols=135 Identities=14% Similarity=0.109 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh--CCCcc--chhHHHHHHcCCCCh----HHHHHHHHHHCCCCCCHH--------H
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL--EVPHI--SMGSLVRQELSPRSA----LYKQIANAVNEGKLVPED--------V 126 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~--~~~~i--s~~dll~~~~~~~~~----~~~~i~~~l~~g~~v~de--------~ 126 (230)
+..|+|+||+||||+|++..|.+.+ ++.++ .+....+.....+.. ..+.+...+..|.+++.. +
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 4569999999999999999998886 22211 111111110001111 125566666777665432 2
Q ss_pred HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEe-cCHHHHHHHHhcCCCCCCccchhccCCCCCC
Q 026951 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFK-SIEDQLVKRNLESEAFSPHKEFLRLGGARFS 205 (230)
Q Consensus 127 ~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~-~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~ 205 (230)
....+...+.. ++.+|+|+.|....+.... ...-.+|+|. .+.+++.+|+.+|..
T Consensus 82 ~~~~i~~~~~~-----~~~~ild~~~~~~~~l~~~---~~~~~vIfi~~~s~~~l~~rl~~R~~---------------- 137 (184)
T smart00072 82 SKETIRQVAEQ-----GKHCLLDIDPQGVKQLRKA---QLYPIVIFIAPPSSEELERRLRGRGT---------------- 137 (184)
T ss_pred CHHHHHHHHHc-----CCeEEEEECHHHHHHHHHh---CCCcEEEEEeCcCHHHHHHHHHhcCC----------------
Confidence 23345555554 6889999988777765532 1122689998 455779999998763
Q ss_pred CCCcHHHHHHHHHHHHHh
Q 026951 206 AADAASAWKEKFRIYAEQ 223 (230)
Q Consensus 206 ~dd~~~~~~~rl~~y~~~ 223 (230)
++++.+++|+....+.
T Consensus 138 --~~~~~i~~rl~~a~~~ 153 (184)
T smart00072 138 --ETAERIQKRLAAAQKE 153 (184)
T ss_pred --CCHHHHHHHHHHHHHH
Confidence 3466788888765543
No 86
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.12 E-value=6.8e-10 Score=88.89 Aligned_cols=136 Identities=16% Similarity=0.167 Sum_probs=84.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCCh--------HHHHHHHHHHCCCCCCH--------H
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSA--------LYKQIANAVNEGKLVPE--------D 125 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~--------~~~~i~~~l~~g~~v~d--------e 125 (230)
++..++|+||+|+||||+++.|-+.. -.++|++.--|.-- ++.. -.+...+.+.++..+.= .
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR-~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPR-PGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCC-CCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 78899999999999999999998887 44455543333221 1111 11344555555544310 1
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCH-HHHHHHHhcCCCCCCccchhccCCCCC
Q 026951 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIE-DQLVKRNLESEAFSPHKEFLRLGGARF 204 (230)
Q Consensus 126 ~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~-e~l~~Rl~~R~~~~~~~~~~~~~~~~~ 204 (230)
+...-++..+.. +..+|+| -+..-+..+.........|++.+|. +++.+|+.+|+.
T Consensus 81 T~~~~ve~~~~~-----G~~vild---Id~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgt--------------- 137 (191)
T COG0194 81 TSREPVEQALAE-----GKDVILD---IDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGT--------------- 137 (191)
T ss_pred CcHHHHHHHHhc-----CCeEEEE---EehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCC---------------
Confidence 223334444444 6788887 3344444444433333466666665 889999999875
Q ss_pred CCCCcHHHHHHHHHHHHHhhh
Q 026951 205 SAADAASAWKEKFRIYAEQIN 225 (230)
Q Consensus 205 ~~dd~~~~~~~rl~~y~~~~~ 225 (230)
|+++.+++||...+.+.+
T Consensus 138 ---ds~e~I~~Rl~~a~~Ei~ 155 (191)
T COG0194 138 ---DSEEVIARRLENAKKEIS 155 (191)
T ss_pred ---CCHHHHHHHHHHHHHHHH
Confidence 568899999988877654
No 87
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.12 E-value=1.7e-09 Score=86.96 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=73.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHhcc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED---VIFALLSKRLEEGY 139 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de---~~~~ll~~~l~~~~ 139 (230)
+..++|+|++||||||+++.|+..++..+++.+++... ..+... ..|....++ .....+.+......
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~---------~~~r~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPA---------KNIDKM-SQGIPLTDEDRLPWLERLNDASYSLY 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCH---------hHHHHH-hcCCCCCcccchHHHHHHHHHHHHHH
Confidence 45789999999999999999999999888887765321 011111 112222211 11112222111110
Q ss_pred ccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCC
Q 026951 140 YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFS 191 (230)
Q Consensus 140 ~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (230)
.....++|+..+ ....+.+.+.+...+..+|+|++|.+++.+|+.+|..+.
T Consensus 73 ~~~~~g~iv~s~-~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~ 123 (176)
T PRK09825 73 KKNETGFIVCSS-LKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHF 123 (176)
T ss_pred hcCCCEEEEEEe-cCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCC
Confidence 122567887555 344455556665666789999999999999999997544
No 88
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.12 E-value=1.2e-09 Score=87.37 Aligned_cols=111 Identities=18% Similarity=0.101 Sum_probs=64.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHHHcCC-CChHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLSKR 134 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~~~~~~-~~~~~~~i~~~l~~g~~v~de~~~~ll~~~ 134 (230)
.+|..|+|+|+|||||||+++.|++.++ +.+++.+. +++.+.. +......... ......+...
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~-~r~~~~~~~~~~~~~~~~----------~~~~~~l~~~ 73 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE-LREILGHYGYDKQSRIEM----------ALKRAKLAKF 73 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH-HHhhcCCCCCCHHHHHHH----------HHHHHHHHHH
Confidence 4778999999999999999999999885 45555443 4443221 1000000000 0011112222
Q ss_pred HHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhc
Q 026951 135 LEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE 186 (230)
Q Consensus 135 l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~ 186 (230)
+. ..+..+|+|+......-.........+..+|+|++|++++.+|+.+
T Consensus 74 l~----~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 74 LA----DQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred HH----hCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchh
Confidence 22 2256788887543211112222333456899999999999999864
No 89
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.09 E-value=4.2e-10 Score=88.80 Aligned_cols=135 Identities=19% Similarity=0.262 Sum_probs=79.2
Q ss_pred CCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhccccCCCeEEEe-
Q 026951 72 PGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYRGESGFILD- 149 (230)
Q Consensus 72 pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~-g~~v~de~~~~ll~~~l~~~~~~~~~~~IlD- 149 (230)
|||||||+++.||+.+|++++++|+++.+... ..+.+++.. |...-.+...+++...+. ..+.||.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g------~si~~i~~~~G~~~fr~~E~~~l~~l~~------~~~~VIa~ 68 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG------MSISEIFAEEGEEAFRELESEALRELLK------ENNCVIAC 68 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHHHHHC------SSSEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC------CcHHHHHHcCChHHHHHHHHHHHHHHhc------cCcEEEeC
Confidence 79999999999999999999999999877543 344444432 111111222223322222 2244443
Q ss_pred --CccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHHHHHhhhhh
Q 026951 150 --GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQINLT 227 (230)
Q Consensus 150 --g~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~y~~~~~~~ 227 (230)
|.+......+.+. ....||+|+++.+++.+|+..+...|. ... ..........+.+|...|.+...-+
T Consensus 69 GGG~~~~~~~~~~L~---~~g~vI~L~~~~~~l~~Rl~~~~~Rp~-----l~~--~~~~~~~~~~~~~R~~~Y~~~a~~~ 138 (158)
T PF01202_consen 69 GGGIVLKEENRELLK---ENGLVIYLDADPEELAERLRARDNRPL-----LKG--KMEHEEILELLFEREPLYEQAADIV 138 (158)
T ss_dssp -TTGGGSHHHHHHHH---HHSEEEEEE--HHHHHHHHHHHCTSGG-----TCS--HHHHHHHHHHHHHHHHHHHHHSSEE
T ss_pred CCCCcCcHHHHHHHH---hCCEEEEEeCCHHHHHHHHhCCCCCCC-----CCC--CChHHHHHHHHHHHHHHHHhcCeEE
Confidence 3666666666665 235699999999999999987664220 000 0000012345557888888866554
Q ss_pred h
Q 026951 228 I 228 (230)
Q Consensus 228 i 228 (230)
+
T Consensus 139 v 139 (158)
T PF01202_consen 139 V 139 (158)
T ss_dssp E
T ss_pred E
Confidence 4
No 90
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=1.1e-09 Score=85.09 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHhcc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSK---RLEEGY 139 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~---~l~~~~ 139 (230)
+-.|+++|..||||||+++.|++++++++++.||+...+. .+-+.+|..+.|+-.+..+++ .+....
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~N----------veKM~~GipLnD~DR~pWL~~i~~~~~~~l 81 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPAN----------VEKMTQGIPLNDDDRWPWLKKIAVELRKAL 81 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHH----------HHHHhcCCCCCcccccHHHHHHHHHHHHHh
Confidence 3469999999999999999999999999999998765321 122556777766533333322 111111
Q ss_pred ccCCCeEEEeCccCCHHHHHHHhccC-------Cc---CEEEEEecCHHHHHHHHhcCCCCC
Q 026951 140 YRGESGFILDGIPRTRIQAEILDQIV-------DV---DLVINFKSIEDQLVKRNLESEAFS 191 (230)
Q Consensus 140 ~~~~~~~IlDg~p~~~~qa~~l~~~~-------~~---d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (230)
..+.++|+-+...-...++++.+.. .+ -.+|+|.++.+++.+|+.+|..|-
T Consensus 82 -~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHF 142 (191)
T KOG3354|consen 82 -ASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHF 142 (191)
T ss_pred -hcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhccccc
Confidence 2478999987666666777776531 12 359999999999999999998754
No 91
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.07 E-value=3.7e-09 Score=85.36 Aligned_cols=120 Identities=19% Similarity=0.253 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHH------------------
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED------------------ 125 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de------------------ 125 (230)
..+.++|..||||||+++.+. .+|++.|++|-+.|+...++++-...|.+.+....+.++.
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 468999999999999999885 9999999999999999999999999999888765444331
Q ss_pred -----HHHHHHHHHH----HhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 126 -----VIFALLSKRL----EEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 126 -----~~~~ll~~~l----~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+..+.+...+ ......+..-+|+| .|.-.+- .+.. .+..+|.+.||.+...+|+..|+.
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~--~~~~--~~~~tvvV~cd~~~Ql~Rl~~Rd~ 148 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA--KLLK--ICHKTVVVTCDEELQLERLVERDE 148 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH--hHHh--heeeEEEEEECcHHHHHHHHHhcc
Confidence 1122222211 11122334555566 4443332 1222 345699999999999999999984
No 92
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.06 E-value=1.8e-10 Score=86.65 Aligned_cols=114 Identities=19% Similarity=0.111 Sum_probs=59.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc-ccCCC
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY-YRGES 144 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~-~~~~~ 144 (230)
|+|.|+|||||||+|+.|++.++.. ..+.............. ...........+....++........ .....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDI---IRDIAPEEDIVDSIDDN---PDWKENKRLDMEFQDELLDSIIQAIRRMNKGR 74 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHH---HHHHHHHTTSHSSHCCH---HCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcH---HHHHHHhcCCccccccc---chhhhhhhhhhhhHHHHHHHHHHhhcccccCC
Confidence 7899999999999999999988221 11222221110000000 00112233333433333322222110 13467
Q ss_pred eEEEeCccCCHHHHHHHhccCCcCEE-EEEecCHHHHHHHHhcCCCCC
Q 026951 145 GFILDGIPRTRIQAEILDQIVDVDLV-INFKSIEDQLVKRNLESEAFS 191 (230)
Q Consensus 145 ~~IlDg~p~~~~qa~~l~~~~~~d~v-I~L~~~~e~l~~Rl~~R~~~~ 191 (230)
.+|+|+........ ...... |+|+||++++.+|+.+|....
T Consensus 75 ~~iid~~~~~~~~~------~~~~~~~i~L~~~~e~~~~R~~~R~~~~ 116 (129)
T PF13238_consen 75 NIIIDGILSNLELE------RLFDIKFIFLDCSPEELRKRLKKRGRKE 116 (129)
T ss_dssp CEEEEESSEEECET------TEEEESSEEEE--HHHHHHHHHCTTTSC
T ss_pred cEEEecccchhccc------ccceeeEEEEECCHHHHHHHHHhCCCCC
Confidence 88999875432211 112223 999999999999999998643
No 93
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.06 E-value=1.3e-09 Score=88.25 Aligned_cols=118 Identities=12% Similarity=0.071 Sum_probs=64.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCC-----ChHHHHHHHHHHCCCCCCHH--------HHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-----SALYKQIANAVNEGKLVPED--------VIFA 129 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~-----~~~~~~i~~~l~~g~~v~de--------~~~~ 129 (230)
+..++|+||+||||||+++.|+..++..++..+..+....... ....+.....+..+...... +..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~- 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI- 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH-
Confidence 4579999999999999999999887755444333222110000 00112222222233211000 001
Q ss_pred HHHHHHHhccccCCCeEEEeCccCCHHHHHHHh-ccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 130 LLSKRLEEGYYRGESGFILDGIPRTRIQAEILD-QIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 130 ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~-~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
-+...+.. +..+|++|. ......+. .....-.+|+|++|.+++.+|+.+|..
T Consensus 81 ~~~~~l~~-----g~~VI~~G~---~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~ 133 (186)
T PRK10078 81 EIDLWLHA-----GFDVLVNGS---RAHLPQARARYQSALLPVCLQVSPEILRQRLENRGR 133 (186)
T ss_pred HHHHHHhC-----CCEEEEeCh---HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC
Confidence 12333333 467888876 11111222 223455689999999999999998753
No 94
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.04 E-value=6.1e-09 Score=86.56 Aligned_cols=125 Identities=14% Similarity=0.097 Sum_probs=67.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchh-HHHHHHc-CCCChHHH------HHHHHHHCCC---CCCHHHHHHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMG-SLVRQEL-SPRSALYK------QIANAVNEGK---LVPEDVIFALLSK 133 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~-dll~~~~-~~~~~~~~------~i~~~l~~g~---~v~de~~~~ll~~ 133 (230)
.|+|.|..||||||+++.|++.++..++... ....... ..++..++ .++.+..+.. ........-++..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 3899999999999999999999986544332 1111000 01111111 1333333221 1111111112222
Q ss_pred HHHhc------cccCCCeEEEeCccCCH--HH-------------HHH---H-----hccCCcCEEEEEecCHHHHHHHH
Q 026951 134 RLEEG------YYRGESGFILDGIPRTR--IQ-------------AEI---L-----DQIVDVDLVINFKSIEDQLVKRN 184 (230)
Q Consensus 134 ~l~~~------~~~~~~~~IlDg~p~~~--~q-------------a~~---l-----~~~~~~d~vI~L~~~~e~l~~Rl 184 (230)
+.... ....+..+|+|+++.+. .| ... + .....||++|+|++|++++.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 22110 01235678999886441 10 000 1 11146899999999999999999
Q ss_pred hcCCC
Q 026951 185 LESEA 189 (230)
Q Consensus 185 ~~R~~ 189 (230)
.+|+.
T Consensus 161 ~~R~~ 165 (219)
T cd02030 161 KKRGD 165 (219)
T ss_pred HHcCC
Confidence 99874
No 95
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.00 E-value=4.8e-09 Score=83.28 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=64.5
Q ss_pred EcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHhccccCCCe
Q 026951 69 IGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED---VIFALLSKRLEEGYYRGESG 145 (230)
Q Consensus 69 ~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de---~~~~ll~~~l~~~~~~~~~~ 145 (230)
+|+|||||||+++.|++.+|..+++.|.+..... +.. ...|....++ .....+..........++..
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS 70 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHHcCCce
Confidence 5999999999999999999999998865421110 000 0111111111 11111111111110122444
Q ss_pred EEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 146 FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 146 ~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+|+ .......+.+.+.+...+..+|+|+||++++.+|+..|..
T Consensus 71 viv-~s~~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~ 113 (163)
T PRK11545 71 LIV-CSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKG 113 (163)
T ss_pred EEE-EecchHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccC
Confidence 555 3334455555566655566799999999999999999975
No 96
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.00 E-value=8.3e-09 Score=95.65 Aligned_cols=100 Identities=12% Similarity=0.045 Sum_probs=78.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~ 140 (230)
.++..|+++|+|||||||+|+.+++..|+.+|+.|++-. . ..+...+...|..
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------~------------~~~~~~a~~~L~~--- 419 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------T------------QNCLTACERALDQ--- 419 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------H------------HHHHHHHHHHHhC---
Confidence 577899999999999999999999999999999986511 0 1223344555554
Q ss_pred cCCCeEEEeCccCCHHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 141 RGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 141 ~~~~~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+..+|+|....+..+...+.++ +.+-.+|++++|.+++.+|+..|..
T Consensus 420 --G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 420 --GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred --CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 6889999988887777666443 3455699999999999999999975
No 97
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=3e-09 Score=82.02 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=77.3
Q ss_pred EcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHhccccCCCe
Q 026951 69 IGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA---LLSKRLEEGYYRGESG 145 (230)
Q Consensus 69 ~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~---ll~~~l~~~~~~~~~~ 145 (230)
+|..||||||+++.||+.+|+.+|+-|+|.... -|.+ +..|..+.|+--.. .+..++.+.. ..+..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~a---------Ni~K-M~~GiPL~DdDR~pWL~~l~~~~~~~~-~~~~~ 69 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPA---------NIEK-MSAGIPLNDDDRWPWLEALGDAAASLA-QKNKH 69 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHH---------HHHH-HhCCCCCCcchhhHHHHHHHHHHHHhh-cCCCc
Confidence 589999999999999999999999999877542 1222 56788887764333 3344444322 22344
Q ss_pred EEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCC
Q 026951 146 FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFS 191 (230)
Q Consensus 146 ~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (230)
.||-+.-.-......+.....--.+|||+.+.+++.+|+..|..|-
T Consensus 70 ~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHF 115 (161)
T COG3265 70 VVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHF 115 (161)
T ss_pred eEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCC
Confidence 5555444445555666554322359999999999999999998764
No 98
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.99 E-value=2.3e-09 Score=86.54 Aligned_cols=114 Identities=13% Similarity=0.047 Sum_probs=71.7
Q ss_pred EEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHH------------HHHHHH
Q 026951 68 LIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA------------LLSKRL 135 (230)
Q Consensus 68 l~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~------------ll~~~l 135 (230)
|.|+.||||||+++.|++.+.-..+.+ +...-..+++.++.+++++.+....+.....- .+...+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~---~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l 77 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKV---IITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL 77 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEE---EEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999874332210 00111345677888888887444444432211 122222
Q ss_pred HhccccCCCeEEEeCccCC------------HHHHHHHh-ccC--CcCEEEEEecCHHHHHHHHhcCCC
Q 026951 136 EEGYYRGESGFILDGIPRT------------RIQAEILD-QIV--DVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 136 ~~~~~~~~~~~IlDg~p~~------------~~qa~~l~-~~~--~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
. .+..+|+|.|..+ ......+. .+. .||++|+|++|+++..+|+..|..
T Consensus 78 ~-----~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 78 K-----RGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE 141 (186)
T ss_dssp H-----TTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS
T ss_pred c-----CCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc
Confidence 2 3678899976433 11222222 223 899999999999999999999986
No 99
>COG0645 Predicted kinase [General function prediction only]
Probab=98.99 E-value=2.1e-08 Score=79.13 Aligned_cols=120 Identities=16% Similarity=0.092 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHhccc
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP---EDVIFALLSKRLEEGYY 140 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~---de~~~~ll~~~l~~~~~ 140 (230)
..+++.|.||+||||+|+.|++.+|..+|..|++.+.. ..- +.... ...|.+-+ +.+...+......-.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L-~g~-p~~~r----~~~g~ys~~~~~~vy~~l~~~A~l~l-- 73 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRL-FGV-PEETR----GPAGLYSPAATAAVYDELLGRAELLL-- 73 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHh-cCC-ccccc----CCCCCCcHHHHHHHHHHHHHHHHHHH--
Confidence 46889999999999999999999999999997655543 320 00000 00111111 112222222222111
Q ss_pred cCCCeEEEeCccCCHHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCCCCC
Q 026951 141 RGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFS 191 (230)
Q Consensus 141 ~~~~~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (230)
..+..+|+|+..-...+.+..... ..+.+.|++.+|.+++..|+..|+.+.
T Consensus 74 ~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~ 128 (170)
T COG0645 74 SSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDA 128 (170)
T ss_pred hCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCc
Confidence 237899999877777776665443 344567999999999999999999743
No 100
>PRK07933 thymidylate kinase; Validated
Probab=98.94 E-value=1.1e-08 Score=84.85 Aligned_cols=117 Identities=18% Similarity=0.122 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHHHHHcCCCChHHHHHHHHHHCC--CCC-CHH-HH---------
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEG--KLV-PED-VI--------- 127 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~---~~~is~~dll~~~~~~~~~~~~~i~~~l~~g--~~v-~de-~~--------- 127 (230)
+.|+|.|+.||||||+++.|++.+. ..++-+. .....+++.++.+++++... ... ... ..
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~----~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLA----FPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEe----cCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 4699999999999999999999873 3222111 00001233445555554421 110 010 00
Q ss_pred -HHHHHHHHHhccccCCCeEEEeCccCCH--HHH------------HHHhcc-------CCcCEEEEEecCHHHHHHHHh
Q 026951 128 -FALLSKRLEEGYYRGESGFILDGIPRTR--IQA------------EILDQI-------VDVDLVINFKSIEDQLVKRNL 185 (230)
Q Consensus 128 -~~ll~~~l~~~~~~~~~~~IlDg~p~~~--~qa------------~~l~~~-------~~~d~vI~L~~~~e~l~~Rl~ 185 (230)
...+.+.+. .+..+|.|+|..+. .|. .++..+ ..||++|+|++|+++..+|+.
T Consensus 77 ~~~~I~p~l~-----~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~ 151 (213)
T PRK07933 77 ARDELAGLLA-----AHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERAR 151 (213)
T ss_pred hHHHHHHHHh-----CCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHH
Confidence 011222333 25678899887653 221 122111 269999999999999999999
Q ss_pred cCCC
Q 026951 186 ESEA 189 (230)
Q Consensus 186 ~R~~ 189 (230)
+|+.
T Consensus 152 ~R~~ 155 (213)
T PRK07933 152 RRAA 155 (213)
T ss_pred hhcc
Confidence 9864
No 101
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.94 E-value=8.1e-09 Score=84.94 Aligned_cols=123 Identities=16% Similarity=0.171 Sum_probs=67.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~---~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~ 137 (230)
.++..|.|.|++||||||+++.|++.++ +.+++.|+....... .+........+......+-+.+.+.+......
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 81 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSH--LSFEERVKTNYDHPDAFDHDLLIEHLKALKAG 81 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCccc--CCHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence 4788999999999999999999999883 455677765432110 00000000000000111112222222211110
Q ss_pred c-------------------cccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 138 G-------------------YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 138 ~-------------------~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
. ......-+|+||...... ..+. ..+|.+|++++|.+++++|...|..
T Consensus 82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~~~--~~~d~~I~v~~~~~~~~~R~~~Rd~ 148 (209)
T PRK05480 82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ERLR--DLMDIKIFVDTPLDIRLIRRLKRDV 148 (209)
T ss_pred CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hhHh--hhhceeEEEeCChhHHHHHHHhhcc
Confidence 0 001223577788643211 0111 2468999999999999999999874
No 102
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.93 E-value=3e-08 Score=80.69 Aligned_cols=112 Identities=22% Similarity=0.234 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHHHcCCCC-hH-HHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRS-AL-YKQIANAVNEGKLVPEDVIFALLSKRLE 136 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~~~~~~~~-~~-~~~i~~~l~~g~~v~de~~~~ll~~~l~ 136 (230)
+.|+++|+|||||||+|+.|++.+. ++|++.| ..+-....++ +. .+...+.+. +-..+++..+++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd-y~~~i~~DEslpi~ke~yres~~-------ks~~rlldSalk 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD-YLRGILWDESLPILKEVYRESFL-------KSVERLLDSALK 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh-hhhheecccccchHHHHHHHHHH-------HHHHHHHHHHhc
Confidence 5799999999999999999999772 3333332 1111111110 11 111111111 112223333333
Q ss_pred hccccCCCeEEEeCccCCHHHHHHHh----ccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 137 EGYYRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 137 ~~~~~~~~~~IlDg~p~~~~qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+.-+|+|...+-..-...|. +......||++.+|.++|.+|-.+|..
T Consensus 74 ------n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge 124 (261)
T COG4088 74 ------NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE 124 (261)
T ss_pred ------ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC
Confidence 35778887654433333221 234567899999999999999977763
No 103
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.91 E-value=3.3e-08 Score=80.88 Aligned_cols=137 Identities=15% Similarity=0.153 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCC---CCh----HHHHHHHHHHCCCCCCH-----H---H
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP---RSA----LYKQIANAVNEGKLVPE-----D---V 126 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~---~~~----~~~~i~~~l~~g~~v~d-----e---~ 126 (230)
++..|+|+||+||||||+++.|++.++..++.....-+.-... +.. ..+.....+..+..+.. . .
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 6778999999999999999999998763333222211111000 000 01223333333332210 0 0
Q ss_pred HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhc-cCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCC
Q 026951 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS 205 (230)
Q Consensus 127 ~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~ 205 (230)
....+...+.. +..+|+|.-+.. ...+.. +..+-.|+++.++.+++.+|+..|..
T Consensus 84 ~~~~i~~~l~~-----g~~vi~dl~~~g---~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~---------------- 139 (205)
T PRK00300 84 PRSPVEEALAA-----GKDVLLEIDWQG---ARQVKKKMPDAVSIFILPPSLEELERRLRGRGT---------------- 139 (205)
T ss_pred cHHHHHHHHHc-----CCeEEEeCCHHH---HHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCC----------------
Confidence 12223333333 567788864432 233332 22223355556778999999999874
Q ss_pred CCCcHHHHHHHHHHHHHhh
Q 026951 206 AADAASAWKEKFRIYAEQI 224 (230)
Q Consensus 206 ~dd~~~~~~~rl~~y~~~~ 224 (230)
++++.+++|+..|....
T Consensus 140 --~~~~~i~~rl~~~~~~~ 156 (205)
T PRK00300 140 --DSEEVIARRLAKAREEI 156 (205)
T ss_pred --CCHHHHHHHHHHHHHHH
Confidence 34567777777666544
No 104
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.91 E-value=9.3e-09 Score=82.34 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=76.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCC---Ch----HHHHHHHHHHCCCCCCH--------HHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR---SA----LYKQIANAVNEGKLVPE--------DVI 127 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~---~~----~~~~i~~~l~~g~~v~d--------e~~ 127 (230)
+..|+|+||+||||||+++.|++.+...+++.....+...... .. ....+...+..+..+.. .+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 3579999999999999999999977655554433333211100 00 01123333333333211 011
Q ss_pred HHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHh-ccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCC
Q 026951 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILD-QIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA 206 (230)
Q Consensus 128 ~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~-~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~ 206 (230)
...+...+.+ +..+|+|.- ......+. .+..+..++++..+.+++.+|+..|..
T Consensus 81 ~~~i~~~~~~-----g~~vi~d~~---~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~----------------- 135 (180)
T TIGR03263 81 KSPVEEALAA-----GKDVLLEID---VQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGT----------------- 135 (180)
T ss_pred HHHHHHHHHC-----CCeEEEECC---HHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC-----------------
Confidence 2334444443 567888853 33333333 333444555556778999999998863
Q ss_pred CCcHHHHHHHHHHHHHh
Q 026951 207 ADAASAWKEKFRIYAEQ 223 (230)
Q Consensus 207 dd~~~~~~~rl~~y~~~ 223 (230)
+.++.+++|+..+..+
T Consensus 136 -~~~~~i~~rl~~~~~~ 151 (180)
T TIGR03263 136 -DSEEVIERRLAKAKKE 151 (180)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 2456778888776543
No 105
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.90 E-value=1.2e-08 Score=81.30 Aligned_cols=120 Identities=19% Similarity=0.157 Sum_probs=83.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHH----------
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL---------- 130 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~l---------- 130 (230)
.++..|++.|..+|||||+|..|...+.-. ..- ..+...-...++.|+.|..++.+...+|+.++.-+
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~~-~~~-~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLIPG-LDP-AELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHHhc-cCh-HHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 488999999999999999999998877322 211 22323334567889999999999888888876443
Q ss_pred -HHHHHHhccccCCCeEEEeCccCC---HHHHHHHh-cc--------CCcCEEEEEecCHHHHHHHHhcCC
Q 026951 131 -LSKRLEEGYYRGESGFILDGIPRT---RIQAEILD-QI--------VDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 131 -l~~~l~~~~~~~~~~~IlDg~p~~---~~qa~~l~-~~--------~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+.+.+. .+..+|+|.|..+ ..-|..++ +| ..||+|++|+++++++. |..+++
T Consensus 81 ~i~e~l~-----kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a-~rggfG 145 (208)
T KOG3327|consen 81 LIKEKLA-----KGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAA-RRGGFG 145 (208)
T ss_pred HHHHHHh-----cCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHH-HhcCcc
Confidence 333333 3678999988755 22233332 23 37999999999999944 444444
No 106
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.89 E-value=2.9e-08 Score=82.49 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~ 101 (230)
.+.|.|.||+||||||+++.|++++++.+++.+++.+..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 467999999999999999999999999999999887654
No 107
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.89 E-value=7.7e-09 Score=83.93 Aligned_cols=120 Identities=13% Similarity=0.032 Sum_probs=68.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHHHcC-------------CCC----hHHHHHHHHHHCCCCCCHH-
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELS-------------PRS----ALYKQIANAVNEGKLVPED- 125 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~-~~~~is~~dll~~~~~-------------~~~----~~~~~i~~~l~~g~~v~de- 125 (230)
+|.|.|+|||||||+|+.|++.+ ++.+|++|+....... +.+ .+.+.+..+.. |..++.-
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~-~~~~~~~~ 79 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRE-TGHFPKFL 79 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHc-CCCccCcc
Confidence 37899999999999999999998 6899999987653211 000 01112222222 2211100
Q ss_pred ----H------------HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 126 ----V------------IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 126 ----~------------~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
. ........... .....-+|+||+-.- .. ..+. ..+|++|++++|.+++++|...|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iViVEG~~l~-~~-~~l~--~l~D~~Ifvd~~~d~~~~Rr~~R~~ 153 (187)
T cd02024 80 RSHGNENDPEKEFIEDAQIEETKADLLG--AEDLHILIVDGFLLY-NY-KPLV--DLFDIRYFLRVPYETCKRRREARTG 153 (187)
T ss_pred cCccccccccccccchhhhhhccccccc--cCCCcEEEEechHhc-CC-HHHH--hhcCceeEecCCHHHHHHHHHHcCC
Confidence 0 00000000000 112345788887321 11 1121 2679999999999999999999976
Q ss_pred CC
Q 026951 190 FS 191 (230)
Q Consensus 190 ~~ 191 (230)
..
T Consensus 154 ~~ 155 (187)
T cd02024 154 YV 155 (187)
T ss_pred cc
Confidence 44
No 108
>PRK06696 uridine kinase; Validated
Probab=98.89 E-value=5.8e-09 Score=86.84 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC--ccchhHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVR 99 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~---~~~--~is~~dll~ 99 (230)
.++.+|.|.|++||||||+|+.|++.+ |.+ ++++|++..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 478899999999999999999999988 544 455776653
No 109
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.89 E-value=6.5e-09 Score=85.54 Aligned_cols=125 Identities=21% Similarity=0.207 Sum_probs=67.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHHHHHcCC------C----C-------hHHHHHHHHHHCC
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSP------R----S-------ALYKQIANAVNEG 119 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~---~~~is~~dll~~~~~~------~----~-------~~~~~i~~~l~~g 119 (230)
++++..|.|.|++||||||+++.|+..++ +.+++.|+.+...... + . .+.+.+.. +.+|
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~g 81 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKN-LKNG 81 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHH-HHCC
Confidence 35788999999999999999999998875 5566776543211000 0 0 00111111 1112
Q ss_pred CCCCHHHHHHHHHHHHHhc-cccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 120 KLVPEDVIFALLSKRLEEG-YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 120 ~~v~de~~~~ll~~~l~~~-~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
..+.-.............. ......-+|+||++..... .+. ..+|.+|++++|.++++.|+..|..
T Consensus 82 ~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~--~~~--~~~d~~I~v~~~~~~~l~R~~~R~~ 148 (207)
T TIGR00235 82 SPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE--RLR--DLMDLKIFVDTPLDIRLIRRIERDI 148 (207)
T ss_pred CCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchH--hHH--HhCCEEEEEECChhHHHHHHHHHHH
Confidence 1111000000000000000 0012356788987653221 122 2568999999999999999998864
No 110
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.88 E-value=3e-08 Score=79.44 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=61.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC---ccchhHHHHHHcCCCCh----HHHHHHHHHHCCCCCC--H------HHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSPRSA----LYKQIANAVNEGKLVP--E------DVIF 128 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~---~is~~dll~~~~~~~~~----~~~~i~~~l~~g~~v~--d------e~~~ 128 (230)
..|+|+|+|||||||+++.|+..++.. .+.....-+.....+.. ..+.+.....++.+.. . .+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 468999999999999999999887532 11000000000001000 0112222222222110 0 0111
Q ss_pred HHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 129 ALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 129 ~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.+...+.. +..+|+||... ....+.+......+|+|++|.+++.+|+..|..
T Consensus 82 -~i~~~~~~-----g~~vv~~g~~~---~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 133 (179)
T TIGR02322 82 -EIDQWLEA-----GDVVVVNGSRA---VLPEARQRYPNLLVVNITASPDVLAQRLAARGR 133 (179)
T ss_pred -HHHHHHhc-----CCEEEEECCHH---HHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 12222332 56788998632 122222222345799999999999999998853
No 111
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.88 E-value=6.8e-08 Score=76.05 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=72.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHHHcCC-CChHHHHHHHHHHCCCCCCHHHHHHHHH---HHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSP-RSALYKQIANAVNEGKLVPEDVIFALLS---KRLEE 137 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~-~~~~is~~dll~~~~~~-~~~~~~~i~~~l~~g~~v~de~~~~ll~---~~l~~ 137 (230)
++.++++|-||+||||+++...+.+ ....++.++++-+.... +.. ..++.+. -+|.+....+.. +++.+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glv---e~rD~~R---klp~e~Q~~lq~~Aa~rI~~ 77 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLV---EHRDEMR---KLPLENQRELQAEAAKRIAE 77 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCc---ccHHHHh---cCCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999998 88889999988654321 110 0111121 245554444333 33333
Q ss_pred ccccCCCeEEEeCccCCH-------HHHHHHhccCCcCEEEEEecCHHHHHHHHhcC
Q 026951 138 GYYRGESGFILDGIPRTR-------IQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (230)
Q Consensus 138 ~~~~~~~~~IlDg~p~~~-------~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (230)
. ...+|+|++.... .-..+..+...||.+|.|.+++++++.|-.+.
T Consensus 78 ~----~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D 130 (189)
T COG2019 78 M----ALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRD 130 (189)
T ss_pred h----hhceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcc
Confidence 2 2228888543211 11122233358999999999998888877654
No 112
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.88 E-value=1.9e-08 Score=82.86 Aligned_cols=120 Identities=16% Similarity=0.158 Sum_probs=63.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCc-cchhHHHHH--HcC-CCCh----HHHHHHHHHHCCCCCCH-------
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQ--ELS-PRSA----LYKQIANAVNEGKLVPE------- 124 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~-is~~dll~~--~~~-~~~~----~~~~i~~~l~~g~~v~d------- 124 (230)
+.++..|+|+||+||||||+++.|.+.. ..+ +.....-+. ... .+.. -.+.....+.+|..+.-
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~-~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERK-LPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcC-CcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence 4588899999999999999999997542 211 111000000 000 0000 01223333434433211
Q ss_pred -HHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecC--HHHHHHHHhcCCC
Q 026951 125 -DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI--EDQLVKRNLESEA 189 (230)
Q Consensus 125 -e~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~--~e~l~~Rl~~R~~ 189 (230)
.+....+...+.+ +..+|+|.-+ ..+..+.+. .||.++++.+| .+++.+|+.+|..
T Consensus 89 YGt~~~~i~~~~~~-----g~~vi~~~~~---~g~~~l~~~-~pd~~~if~~pps~e~l~~Rl~~R~~ 147 (206)
T PRK14738 89 YGVPKAPVRQALAS-----GRDVIVKVDV---QGAASIKRL-VPEAVFIFLAPPSMDELTRRLELRRT 147 (206)
T ss_pred ecCCHHHHHHHHHc-----CCcEEEEcCH---HHHHHHHHh-CCCeEEEEEeCCCHHHHHHHHHHcCC
Confidence 0112234444443 5678887543 344445443 57877777765 5689999999864
No 113
>PRK07667 uridine kinase; Provisional
Probab=98.87 E-value=5.6e-09 Score=85.12 Aligned_cols=122 Identities=7% Similarity=0.010 Sum_probs=66.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHHHcC----CCChH-------------HHHHHHHHHCC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELS----PRSAL-------------YKQIANAVNEG 119 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~~~~~----~~~~~-------------~~~i~~~l~~g 119 (230)
...+|.|.|+|||||||+|+.|++.++ +..++.|+.+..... ...+. ...+-..+.++
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 458899999999999999999998763 458888887654321 00100 00110111222
Q ss_pred CCCCHHHHHHHHHHHHHhc-cccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 120 KLVPEDVIFALLSKRLEEG-YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 120 ~~v~de~~~~ll~~~l~~~-~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
..+.-..+........... ......-+|+||..... ..+.. .+|.+|++++|+++.++|+.+|.
T Consensus 96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~---~~~~~--~~d~~v~V~~~~~~~~~R~~~r~ 160 (193)
T PRK07667 96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQR---KEWRD--FFHYMVYLDCPRETRFLRESEET 160 (193)
T ss_pred CeEEEeeeccccccccccceecCCCCEEEEEehhhhh---hhHHh--hceEEEEEECCHHHHHHHHhccc
Confidence 1110000000000000000 00123557778864211 11222 46999999999999999999875
No 114
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.86 E-value=5.2e-08 Score=79.05 Aligned_cols=118 Identities=12% Similarity=0.117 Sum_probs=68.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCCh--------HHHHHHHHHHCCCCCCH--------H
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSA--------LYKQIANAVNEGKLVPE--------D 125 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~--------~~~~i~~~l~~g~~v~d--------e 125 (230)
++..|+|+||+||||||+++.|.+.+.-.++++...-|.- .++.. --+...+.+.+|..+.- .
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~-r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP-RPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC-CCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 6788999999999999999999887632233332222211 11100 01333444445443311 1
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcC--EEEEEecC-HHHHHHHHhcCCC
Q 026951 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVD--LVINFKSI-EDQLVKRNLESEA 189 (230)
Q Consensus 126 ~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d--~vI~L~~~-~e~l~~Rl~~R~~ 189 (230)
+..+-+...+.+ ++.+|+|.-+....+ +... .++ .+|++.+| .+++.+|+.+|..
T Consensus 82 t~~~~i~~~~~~-----g~~~i~d~~~~g~~~---l~~~-~~~~~~~Ifi~pps~e~l~~RL~~R~~ 139 (186)
T PRK14737 82 TPKAFIEDAFKE-----GRSAIMDIDVQGAKI---IKEK-FPERIVTIFIEPPSEEEWEERLIHRGT 139 (186)
T ss_pred CcHHHHHHHHHc-----CCeEEEEcCHHHHHH---HHHh-CCCCeEEEEEECCCHHHHHHHHHhcCC
Confidence 222334444443 678888864433333 3332 333 58889886 5899999999874
No 115
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.85 E-value=4.1e-08 Score=76.78 Aligned_cols=106 Identities=20% Similarity=0.108 Sum_probs=61.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHhc
Q 026951 66 WVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALL--SKRLEEG 138 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~---~~--~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll--~~~l~~~ 138 (230)
|+|+|+|||||||+|+.|++.+ +. .+++.+. ++..+....... ..-..+.+..+. ...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~-~r~~l~~~~~~~----------~~~~~~~~~~~~~~a~~l~~- 69 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN-VRHGLNKDLGFS----------REDREENIRRIAEVAKLLAD- 69 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH-HHHhhhhccCCC----------cchHHHHHHHHHHHHHHHHh-
Confidence 7899999999999999999988 54 3444443 433222110000 000011111111 111222
Q ss_pred cccCCCeEEEeCccCCHHHHHHHhccC--CcCEEEEEecCHHHHHHHHhc
Q 026951 139 YYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLE 186 (230)
Q Consensus 139 ~~~~~~~~IlDg~p~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~ 186 (230)
.+..+|+|.......+...+.++. ....+|+|++|.+++.+|-.+
T Consensus 70 ---~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 70 ---AGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred ---CCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 367788887655555555555443 455699999999999999654
No 116
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.85 E-value=5.3e-08 Score=77.84 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=61.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHHHcCCCChH-HHHHHHHHHCCCCCCHHHHHH--HHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSAL-YKQIANAVNEGKLVPEDVIFA--LLSK 133 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~~~~~~~~~~-~~~i~~~l~~g~~v~de~~~~--ll~~ 133 (230)
++..|+|+|+|||||||+++.|++.+. +.+++.|.+ ++.+..+... .+.. +..... .+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r-----------~~~~~~~~~~a~ 70 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDR-----------DTNIRRIGFVAN 70 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhH-----------HHHHHHHHHHHH
Confidence 567899999999999999999998872 566776544 3322211000 0000 001111 1122
Q ss_pred HHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHH
Q 026951 134 RLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (230)
Q Consensus 134 ~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (230)
.+.. .+..+|+|+........+.+........+|+|++|.+++.+|.
T Consensus 71 ~~~~----~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 71 LLTR----HGVIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred HHHh----CCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhC
Confidence 1221 2456777765323344444544434456999999999999995
No 117
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.85 E-value=2.2e-08 Score=81.73 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
.+.|+|.|+.|+||||+|+.||++++..++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 467999999999999999999999997655
No 118
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.83 E-value=7.9e-08 Score=80.29 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~ 100 (230)
+.+|.|.|++||||||+|+.|++++|+++++.++++|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 46899999999999999999999999999999998775
No 119
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.82 E-value=1.5e-07 Score=79.59 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=87.9
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccc---hhHHHHHHcCCC----------ChHHHHHHHHHHC-CCCCCH
Q 026951 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS---MGSLVRQELSPR----------SALYKQIANAVNE-GKLVPE 124 (230)
Q Consensus 59 ~~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is---~~dll~~~~~~~----------~~~~~~i~~~l~~-g~~v~d 124 (230)
...+...|++.|+.|+|||++|+.||+++|+.|+. +|++.-.....+ .-..-.|+.+-.+ ..-+.-
T Consensus 67 f~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa 146 (393)
T KOG3877|consen 67 FHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSA 146 (393)
T ss_pred hcccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHH
Confidence 44577899999999999999999999999987765 554433222100 0000111111111 000111
Q ss_pred HHH-----------HHHHHHHHHhccccCCCeEEEeCccCC-HHHHHHH----------------------hccCCcCEE
Q 026951 125 DVI-----------FALLSKRLEEGYYRGESGFILDGIPRT-RIQAEIL----------------------DQIVDVDLV 170 (230)
Q Consensus 125 e~~-----------~~ll~~~l~~~~~~~~~~~IlDg~p~~-~~qa~~l----------------------~~~~~~d~v 170 (230)
... ...++..+ ..+.|+|++..|.+ ...++.+ .++..|++|
T Consensus 147 ~~Q~r~y~~R~~QY~dAL~HiL-----~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLV 221 (393)
T KOG3877|consen 147 AMQDRIYNCRFDQYLDALAHIL-----NTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLV 221 (393)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH-----hcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEE
Confidence 111 11222222 34789999988866 2222222 122379999
Q ss_pred EEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHH-HHHHHHhhhh
Q 026951 171 INFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK-FRIYAEQINL 226 (230)
Q Consensus 171 I~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~r-l~~y~~~~~~ 226 (230)
|+|+.|...+.++++.|+....- ..+. ..=-.|.++.++.. ++.|.+.++-
T Consensus 222 iYld~Pv~~v~~~Ik~rg~~~Ei-k~~s----~aYL~diE~~YK~~fL~e~s~h~ei 273 (393)
T KOG3877|consen 222 IYLDTPVNKVLENIKRRGNTDEI-KTVS----EAYLKDIEESYKDSFLREYSNHSEI 273 (393)
T ss_pred EEEcCCcHHHHHHHHhcCCCcce-eehh----HHHHHHHHHHHHHHHHHHHhhhhhe
Confidence 99999999999999998752200 0000 00012345666655 6666665543
No 120
>COG4639 Predicted kinase [General function prediction only]
Probab=98.81 E-value=1e-07 Score=74.20 Aligned_cols=113 Identities=20% Similarity=0.187 Sum_probs=73.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
...++++|+|||||||+++.. ..+...++.+++=...... ..+...+ -.++.+++++.+.+++.. ..
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~~-------~~~e~sq---k~~~~~~~~l~~~l~qrl-~~ 68 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGVS-------ASKENSQ---KNDELVWDILYKQLEQRL-RR 68 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHhhhc-------hhhhhcc---ccHHHHHHHHHHHHHHHH-Hc
Confidence 356899999999999999853 5578888888765433111 1111111 123344444444443322 22
Q ss_pred CCeEEEeCccCCHHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCC
Q 026951 143 ESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 143 ~~~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
++-.|+|......++...+..+ +....+|+|+.|.+.|.+|.+.|.
T Consensus 69 Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~ 118 (168)
T COG4639 69 GKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRE 118 (168)
T ss_pred CCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccc
Confidence 7889999988777776665433 455678999999999999976443
No 121
>PRK06526 transposase; Provisional
Probab=98.80 E-value=8.2e-09 Score=87.72 Aligned_cols=93 Identities=15% Similarity=0.044 Sum_probs=66.5
Q ss_pred chhhhHHHHHhhhhhHhhhhhhccchhhhh----cccCCccccccccCCCccccccccCCCCCCCCeEEEEEcCCCCChh
Q 026951 2 AGLSRLRAAAALQLRQIARSRAYGSAAAAQ----LQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKH 77 (230)
Q Consensus 2 ~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivl~G~pGsGKs 77 (230)
+.|+.-|.+.|.. +++.++++.+.+|..+ |||+..+ ..............|...+..++|+||||+|||
T Consensus 40 ~~ll~~E~~~R~~-~~~~~~lk~a~~p~~~~le~fd~~~~~------~~~~~~~~~l~~~~fi~~~~nlll~Gp~GtGKT 112 (254)
T PRK06526 40 AACLQREVAARES-HGGEGRIRAARFPARKSLEEFDFDHQR------SLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKT 112 (254)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhCCCCCCCChhhccCccCC------CcchHHHHHHhcCchhhcCceEEEEeCCCCchH
Confidence 4567777777877 8888888899988875 5665444 223333333445567778889999999999999
Q ss_pred HHHHHHHHHh-----CCCccchhHHHHHH
Q 026951 78 VYADNLSKLL-----EVPHISMGSLVRQE 101 (230)
Q Consensus 78 T~a~~La~~~-----~~~~is~~dll~~~ 101 (230)
++|..|+... .+.++++.+++.+.
T Consensus 113 hLa~al~~~a~~~g~~v~f~t~~~l~~~l 141 (254)
T PRK06526 113 HLAIGLGIRACQAGHRVLFATAAQWVARL 141 (254)
T ss_pred HHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence 9999986643 35566777777654
No 122
>PRK12338 hypothetical protein; Provisional
Probab=98.79 E-value=1.1e-07 Score=82.84 Aligned_cols=128 Identities=13% Similarity=0.181 Sum_probs=73.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCC--C---h-HHHHHH---HHHHCCC-CCC-H------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR--S---A-LYKQIA---NAVNEGK-LVP-E------ 124 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~--~---~-~~~~i~---~~l~~g~-~v~-d------ 124 (230)
+|..|+|.|+|||||||+|+.||+.+|+.++..+|.+++.+..- . + +...-. +.+.... ..+ .
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~g 82 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAG 82 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHH
Confidence 56789999999999999999999999999997778888765421 0 0 000000 0111111 111 1
Q ss_pred -----HHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHH--HHhccCCcCEEEEEecCHHHHHHHHhcCCCCC
Q 026951 125 -----DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAE--ILDQIVDVDLVINFKSIEDQLVKRNLESEAFS 191 (230)
Q Consensus 125 -----e~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~--~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (230)
+.+..-+..-+.... ..+..+|++|.-..-.-.. .+.... +-.++++..+++.-.+|+..|....
T Consensus 83 f~~q~~~V~~~i~~vi~r~~-~~g~svIiEGvhl~P~~i~~~~~~~~~-~v~~~vl~~dee~h~~Rf~~R~~~~ 154 (319)
T PRK12338 83 FEEHASFVIPAIEKVIERAV-TDSDDIVIEGVHLVPGLIDIEQFEENA-SIHFFILSADEEVHKERFVKRAMEI 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCeEEEEeccccHHHHhhhhhcccC-ceEEEEEECCHHHHHHHHHHhhhcc
Confidence 122222222222211 3467899999743322211 111111 2235556688899999999987643
No 123
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.79 E-value=3.3e-08 Score=91.32 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=37.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~ 101 (230)
++++|.|.||+||||||+|+.|++++|+.+++.|++.|..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 6788999999999999999999999999999999888864
No 124
>PRK08181 transposase; Validated
Probab=98.76 E-value=3.2e-08 Score=84.68 Aligned_cols=93 Identities=23% Similarity=0.262 Sum_probs=65.6
Q ss_pred chhhhHHHHHhhhhhHhhhhhhccchhhhh----cccCCccccccccCCCccccccccCC-CCCCCCeEEEEEcCCCCCh
Q 026951 2 AGLSRLRAAAALQLRQIARSRAYGSAAAAQ----LQYDYDEECDLHGQASEPMLRLDSAG-SPPRRGVQWVLIGDPGVKK 76 (230)
Q Consensus 2 ~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivl~G~pGsGK 76 (230)
+.|+.-|...|.. +++.+..+.+.+|..+ |||+..+ ..+.......... .|..++..++|+||||+||
T Consensus 47 ~~ll~~E~~~R~~-~~~~r~lk~A~~p~~~tle~fd~~~~~------~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGK 119 (269)
T PRK08181 47 AAIAEHELAERAR-RRIERHLAEAHLPPGKTLDSFDFEAVP------MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGK 119 (269)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCHhhCCccCCC------CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcH
Confidence 4567777787876 7878888888888665 5555444 2223333333333 3566777899999999999
Q ss_pred hHHHHHHHHHh-----CCCccchhHHHHHH
Q 026951 77 HVYADNLSKLL-----EVPHISMGSLVRQE 101 (230)
Q Consensus 77 sT~a~~La~~~-----~~~~is~~dll~~~ 101 (230)
|+++..++... .+.++++.+++.+.
T Consensus 120 THLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 120 SHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred HHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 99999997533 36788888888765
No 125
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.75 E-value=2.5e-07 Score=74.60 Aligned_cols=105 Identities=23% Similarity=0.213 Sum_probs=64.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHH---HHHHH--
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED---VIFAL-- 130 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~---~--~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de---~~~~l-- 130 (230)
.++..|+|+|+|||||||+++.|+..+ | +.+++.++ +++.+..+. ...+.+ .+..+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~-~r~~l~~~~-------------~~~~~~~~~~~~~~~~ 81 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN-VRHGLNKDL-------------GFSEEDRKENIRRIGE 81 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH-HHhhhcccc-------------CCCHHHHHHHHHHHHH
Confidence 467899999999999999999999876 2 34555544 333222110 011111 11111
Q ss_pred HHHHHHhccccCCCeEEEeCccCCHHHHHHHhccC--CcCEEEEEecCHHHHHHH
Q 026951 131 LSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKR 183 (230)
Q Consensus 131 l~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~R 183 (230)
+...+. ..+..+|+|.......+...+.... .+..+|+|++|.+++.+|
T Consensus 82 ~~~~~~----~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 82 VAKLFV----RNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred HHHHHH----cCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 111122 2368888997655566666665542 245689999999999999
No 126
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.73 E-value=4.1e-08 Score=80.30 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=65.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCC---C----HHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV---P----EDVIFAL 130 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~---~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v---~----de~~~~l 130 (230)
.+|..+++.|+|||||||++..+...+ ++.+|+.|++- .... ....+... ..... . ..+...+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r-~~~p----~~~~~~~~--~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR-QFHP----DYDELLKA--DPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG-GGST----THHHHHHH--HCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH-Hhcc----chhhhhhh--hhhhhHHHHHHHHHHHHHHH
Confidence 478889999999999999999998886 67888887653 3221 11111110 00000 0 1133344
Q ss_pred HHHHHHhccccCCCeEEEeCccCCHHHHH-HH---hccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 131 LSKRLEEGYYRGESGFILDGIPRTRIQAE-IL---DQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 131 l~~~l~~~~~~~~~~~IlDg~p~~~~qa~-~l---~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+...+.. +..+|+|+...+..... .+ .+.+.--.++++.+|++..+.|+..|..
T Consensus 86 ~~~a~~~-----~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 86 IEYAIEN-----RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYE 143 (199)
T ss_dssp HHHHHHC-----T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHH
T ss_pred HHHHHHc-----CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHH
Confidence 4444444 67999998776655444 33 3334444588899999999999998853
No 127
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.73 E-value=7.9e-08 Score=75.62 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=60.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHHHHHcCCCCh--HHHHHHHHHHCCCCCCHHHHHH--HHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQELSPRSA--LYKQIANAVNEGKLVPEDVIFA--LLS 132 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~---~~--~~is~~dll~~~~~~~~~--~~~~i~~~l~~g~~v~de~~~~--ll~ 132 (230)
+|..|.|+|.|||||||+|+.|.+++ |. .+++. |.++..+..+-. ..... +.+.+ .+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~------------e~~rr~~~~A 67 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDRE------------ENIRRIAEVA 67 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHH------------HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHH------------HHHHHHHHHH
Confidence 46789999999999999999999887 33 34444 445544433211 11111 11111 122
Q ss_pred HHHHhccccCCCeEEEeCccCCHHHHHHHhccCC--cCEEEEEecCHHHHHHHH
Q 026951 133 KRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD--VDLVINFKSIEDQLVKRN 184 (230)
Q Consensus 133 ~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~--~d~vI~L~~~~e~l~~Rl 184 (230)
..+.. .+..+|++..--.....+...+... ..+-||++||.+++.+|=
T Consensus 68 ~ll~~----~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 68 KLLAD----QGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp HHHHH----TTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred HHHHh----CCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 33333 2566777754444444444444322 357999999999999994
No 128
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.73 E-value=2.5e-07 Score=76.97 Aligned_cols=153 Identities=17% Similarity=0.211 Sum_probs=84.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHHHcCC---------CChHHHHHHHHHHCCCCCCHH
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSP---------RSALYKQIANAVNEGKLVPED 125 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~~~~~~---------~~~~~~~i~~~l~~g~~v~de 125 (230)
......|+++|.|+.|||++|+.|+..++ ..++++++.-|+.... .++.+..+++-+. ..
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a------~~ 82 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA------KE 82 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH------HH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH------HH
Confidence 34678899999999999999999998663 3688899887776543 2333444433221 12
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCC
Q 026951 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGG 201 (230)
Q Consensus 126 ~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ 201 (230)
.+.. +..++.. .++.--|+|+...|......+.+. ...-++|-.-|+++.++++-........ -.|
T Consensus 83 ~l~d-l~~~l~~---~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~s--pDY---- 152 (222)
T PF01591_consen 83 ALED-LIEWLQE---EGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNS--PDY---- 152 (222)
T ss_dssp HHHH-HHHHHHT---S--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTS--GGG----
T ss_pred HHHH-HHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCC--ccc----
Confidence 2222 2334553 235678999999999888876433 2122355556667666665554443210 111
Q ss_pred CCCCCCCcHHHHHHHHHHHHHhhhhhh
Q 026951 202 ARFSAADAASAWKEKFRIYAEQINLTI 228 (230)
Q Consensus 202 ~~~~~dd~~~~~~~rl~~y~~~~~~~i 228 (230)
.+...++..+.+++|++.|....+|+=
T Consensus 153 ~~~~~e~A~~Df~~RI~~Ye~~YEpl~ 179 (222)
T PF01591_consen 153 KGMDPEEAIEDFKKRIEHYEKVYEPLD 179 (222)
T ss_dssp TTS-HHHHHHHHHHHHHHHHTT-----
T ss_pred ccCCHHHHHHHHHHHHHhhcccccccc
Confidence 122334567889999999999998874
No 129
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.73 E-value=3.8e-07 Score=82.92 Aligned_cols=125 Identities=18% Similarity=0.135 Sum_probs=69.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCC-----h-H----HHHHHHHHHCCCC------CCH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRS-----A-L----YKQIANAVNEGKL------VPE 124 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~-----~-~----~~~i~~~l~~g~~------v~d 124 (230)
.+|..|+++|+|||||||++..||..+|+.++-..|.+++.+..-. + + .... +.+..+.. -.+
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~-~~~~~~~~~~~~~~~~~ 331 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAW-RALLPPGEGLPAEPTRA 331 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHH-hhccCcccccccccchH
Confidence 3688999999999999999999999999985533455555332110 0 0 0000 01111110 011
Q ss_pred H-----------H---HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCH-HHHHHHHhcCCC
Q 026951 125 D-----------V---IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIE-DQLVKRNLESEA 189 (230)
Q Consensus 125 e-----------~---~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~-e~l~~Rl~~R~~ 189 (230)
. + +..++...+++ +..+|+||.-..-.-..........-+.+++.+++ +.-.+|+..|..
T Consensus 332 ~vi~Gf~~q~~~V~~gi~~vI~r~l~e-----G~SvIIEGVHl~P~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~ 406 (475)
T PRK12337 332 EVLRGFRDQVQQVAVGLGAIQERSAQE-----GTSLVLEGVHLVPGYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDR 406 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCeEEEECCCCCHHHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhh
Confidence 1 1 33445555554 78999999644433222111111222345666665 777788888876
Q ss_pred CC
Q 026951 190 FS 191 (230)
Q Consensus 190 ~~ 191 (230)
..
T Consensus 407 ~~ 408 (475)
T PRK12337 407 ET 408 (475)
T ss_pred hc
Confidence 43
No 130
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.72 E-value=2.4e-07 Score=81.62 Aligned_cols=124 Identities=17% Similarity=0.109 Sum_probs=72.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC------CCccchhHHHHHHcCC------CChHHHHHHH--------H---HHCCCCC
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVRQELSP------RSALYKQIAN--------A---VNEGKLV 122 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~------~~~is~~dll~~~~~~------~~~~~~~i~~--------~---l~~g~~v 122 (230)
++|+|+|||||||+++.|+..+. +.+++.||++...... ..+.++..++ + +.+|...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~~ 81 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSEL 81 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 68999999999999999987765 3489999988422211 1111211111 1 1233332
Q ss_pred CH------HHHHHHHH-------------------HHHHhccccCCCeEEEeCccCCHHHHHHHhcc----CCcCEEEEE
Q 026951 123 PE------DVIFALLS-------------------KRLEEGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINF 173 (230)
Q Consensus 123 ~d------e~~~~ll~-------------------~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L 173 (230)
.. +++.+.+. .++.........-+|+|...+....+..+..+ .....+|++
T Consensus 82 ~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~l 161 (340)
T TIGR03575 82 SAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFL 161 (340)
T ss_pred cCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEE
Confidence 11 22211111 11111000112358889877777766655433 345579999
Q ss_pred ecCHHHHHHHHhcCCC
Q 026951 174 KSIEDQLVKRNLESEA 189 (230)
Q Consensus 174 ~~~~e~l~~Rl~~R~~ 189 (230)
++|.+++.+|..+|..
T Consensus 162 d~ple~~l~RN~~R~~ 177 (340)
T TIGR03575 162 DCPVESCLLRNKQRPV 177 (340)
T ss_pred eCCHHHHHHHHhcCCC
Confidence 9999999999999964
No 131
>PRK07429 phosphoribulokinase; Provisional
Probab=98.71 E-value=2e-08 Score=88.19 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLV 98 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~---~~~is~~dll 98 (230)
.++.+|.|.|++||||||+++.|+..++ +..++.|++.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 5788999999999999999999999887 5567777764
No 132
>PRK09183 transposase/IS protein; Provisional
Probab=98.71 E-value=2.3e-08 Score=85.24 Aligned_cols=92 Identities=23% Similarity=0.169 Sum_probs=64.6
Q ss_pred chhhhHHHHHhhhhhHhhhhhhccchhhhh----cccCCccccccccCCCccccccccCCCCCCCCeEEEEEcCCCCChh
Q 026951 2 AGLSRLRAAAALQLRQIARSRAYGSAAAAQ----LQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKH 77 (230)
Q Consensus 2 ~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivl~G~pGsGKs 77 (230)
+.|+.-|...|.. +++.++++.+.+|..+ |||++.+ .............++..++..++|+||||+|||
T Consensus 44 ~~ll~~E~~~R~~-~~~~~~~k~a~~p~~~~l~~fd~~~~~------~~~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKT 116 (259)
T PRK09183 44 EHLLHEEKLARHQ-RKQAMYTRMAAFPAVKTFEEYDFTFAT------GAPQKQLQSLRSLSFIERNENIVLLGPSGVGKT 116 (259)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhCCCCCCCcHhhcccccCC------CCCHHHHHHHhcCCchhcCCeEEEEeCCCCCHH
Confidence 4567777777877 8888888999999876 6666555 222333333334456678889999999999999
Q ss_pred HHHHHHHHHh-----CCCccchhHHHHH
Q 026951 78 VYADNLSKLL-----EVPHISMGSLVRQ 100 (230)
Q Consensus 78 T~a~~La~~~-----~~~~is~~dll~~ 100 (230)
|++..|+... .+.+++..+++..
T Consensus 117 hLa~al~~~a~~~G~~v~~~~~~~l~~~ 144 (259)
T PRK09183 117 HLAIALGYEAVRAGIKVRFTTAADLLLQ 144 (259)
T ss_pred HHHHHHHHHHHHcCCeEEEEeHHHHHHH
Confidence 9999996543 3456666666543
No 133
>PHA03132 thymidine kinase; Provisional
Probab=98.71 E-value=3e-07 Score=85.83 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=72.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCC---CCCHHHHH----------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK---LVPEDVIF---------- 128 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~---~v~de~~~---------- 128 (230)
++..|+|.|+.||||||+++.|++.+|..++.+.+=......-.+..++.+.+.+.++. .-+...+.
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pf 335 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPF 335 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHH
Confidence 47899999999999999999999988554443221110000000134566666654432 11111111
Q ss_pred HHHHHHHH------hc---cccCCCeEEEeCccCCHH--H---------------HHHHhcc--CCcCEEEEEecCHHHH
Q 026951 129 ALLSKRLE------EG---YYRGESGFILDGIPRTRI--Q---------------AEILDQI--VDVDLVINFKSIEDQL 180 (230)
Q Consensus 129 ~ll~~~l~------~~---~~~~~~~~IlDg~p~~~~--q---------------a~~l~~~--~~~d~vI~L~~~~e~l 180 (230)
.++..++. .. ....+..+|+|.++.+.. + ...+..+ ..||++|+|+++++++
T Consensus 336 l~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~a 415 (580)
T PHA03132 336 RALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEEN 415 (580)
T ss_pred HHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHH
Confidence 01111111 10 113356788898875421 1 1111221 2589999999999999
Q ss_pred HHHHhcCCC
Q 026951 181 VKRNLESEA 189 (230)
Q Consensus 181 ~~Rl~~R~~ 189 (230)
++|+.+|+.
T Consensus 416 lkRIkkRgR 424 (580)
T PHA03132 416 LRRVKKRGR 424 (580)
T ss_pred HHHHHhcCc
Confidence 999999864
No 134
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.69 E-value=9e-08 Score=78.89 Aligned_cols=126 Identities=21% Similarity=0.198 Sum_probs=70.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC---ccchhHHHHHHcCC----------CCh-------HHHHHHHHHHCCC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSP----------RSA-------LYKQIANAVNEGK 120 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~---~is~~dll~~~~~~----------~~~-------~~~~i~~~l~~g~ 120 (230)
.+...|.|.|++||||||+|+.|++.|+.. .|+.|+.....-.. ..+ +.+.+.. +.+|+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~-L~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKD-LKQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHH-HHcCC
Confidence 466899999999999999999999999855 66666655421110 000 1122222 23333
Q ss_pred CCCHHHHHHHHHHHHHhcc-ccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCC
Q 026951 121 LVPEDVIFALLSKRLEEGY-YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFS 191 (230)
Q Consensus 121 ~v~de~~~~ll~~~l~~~~-~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (230)
.+..-...-.-..+..... -....-+||+|+---.. +.+.. ..|+.|++++|.++++.|...|....
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~--~~d~kIfvdtd~D~RliRri~RD~~~ 152 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD--LMDLKIFVDTDADVRLIRRIKRDVQE 152 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh--hcCEEEEEeCCccHHHHHHHHHHHHH
Confidence 3221111000001110000 02245678898643222 11111 46889999999999999999887643
No 135
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.68 E-value=4.3e-07 Score=74.44 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=36.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~ 101 (230)
.++|.|=||.||||||+|+.||++||+.|++++-+.|..
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 478999999999999999999999999999999988854
No 136
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.66 E-value=4.2e-07 Score=77.91 Aligned_cols=111 Identities=23% Similarity=0.105 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHHHcC-CCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~dll~~~~~-~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~ 137 (230)
+.|+|+|.|||||||+|+.|++.+ .+.+++-+++....-. ..+...+.++. .+...+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~-----------~l~s~v~r~ls~ 70 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARG-----------SLKSAVERALSK 70 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHH-----------HHHHHHHHHHTT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHH-----------HHHHHHHHhhcc
Confidence 579999999999999999998865 3455664444411100 01111111111 122233333332
Q ss_pred ccccCCCeEEEeCccCCHHHHHHHh----ccCCcCEEEEEecCHHHHHHHHhcCCCC
Q 026951 138 GYYRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 138 ~~~~~~~~~IlDg~p~~~~qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
..-+|+|+-.+.......|- .......+|+++||.+.+.+|-.+|...
T Consensus 71 -----~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~ 122 (270)
T PF08433_consen 71 -----DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEP 122 (270)
T ss_dssp ------SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S
T ss_pred -----CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCC
Confidence 47889998777755554442 2345667999999999999999999853
No 137
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.64 E-value=3.4e-07 Score=74.79 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=61.9
Q ss_pred CCCCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCC---HHHHHH
Q 026951 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP---EDVIFA 129 (230)
Q Consensus 58 ~~~~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~---de~~~~ 129 (230)
.++.++..|+|+|++||||||+++.|+..+ +..+++.+++...... .. .+.+ .+.+..
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~-~~-------------~~~~~~~~~~~~~ 84 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS-DL-------------GFSDADRKENIRR 84 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh-cC-------------CcCcccHHHHHHH
Confidence 344688899999999999999999999876 2455555544322111 00 0111 122222
Q ss_pred HHH--HHHHhccccCCCeEEEeCccC-CHHHHHHHhccC-CcCE-EEEEecCHHHHHHH
Q 026951 130 LLS--KRLEEGYYRGESGFILDGIPR-TRIQAEILDQIV-DVDL-VINFKSIEDQLVKR 183 (230)
Q Consensus 130 ll~--~~l~~~~~~~~~~~IlDg~p~-~~~qa~~l~~~~-~~d~-vI~L~~~~e~l~~R 183 (230)
+.. ..+.. ...+|+..|.. ...+.+.+.... ...+ +|+|++|.+++.+|
T Consensus 85 l~~~a~~~~~-----~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 85 VGEVAKLMVD-----AGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred HHHHHHHHhh-----CCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence 211 11121 22344455544 345555555432 2344 89999999999999
No 138
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.63 E-value=3.9e-07 Score=73.10 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=64.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC--CccchhHHHHHHcCCCChHHHHHHHHHHCCCCC------C--HHHH---HH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLV------P--EDVI---FA 129 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~--~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v------~--de~~---~~ 129 (230)
+.+|+|-|+|.|||||+|+.|.+.+.- .|+++|.++.. +.++.. ..+.-+ + .... ..
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~-~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~ 70 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM-MPPGRY---------RPGDGLEPAGDRPDGGPLFRRLYA 70 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH-S-GGGG---------TSTTSEEEETTSEEE-HHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh-cCcccc---------cCCccccccccCCchhHHHHHHHH
Confidence 357999999999999999999999864 57788877764 221100 000000 0 1111 11
Q ss_pred HHHHHHHhccccCCCeEEEeCccCCHHH-HHHHhc-c-CCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 130 LLSKRLEEGYYRGESGFILDGIPRTRIQ-AEILDQ-I-VDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 130 ll~~~l~~~~~~~~~~~IlDg~p~~~~q-a~~l~~-~-~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.+...+... ...+.++|+|........ .+.+.+ + ..+-++|-+.||.+++.+|-..|.-
T Consensus 71 ~~~~~iaa~-a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgD 132 (174)
T PF07931_consen 71 AMHAAIAAM-ARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGD 132 (174)
T ss_dssp HHHHHHHHH-HHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTS
T ss_pred HHHHHHHHH-HhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCC
Confidence 112222211 134889999977655443 445533 3 3456799999999999999988763
No 139
>PTZ00301 uridine kinase; Provisional
Probab=98.62 E-value=5.7e-08 Score=80.31 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=62.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh----C---CCccchhHHHHHHcCCCChHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL----E---VPHISMGSLVRQELSPRSALYKQIANAVNEG--KLVPEDVIFALLSKR 134 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~----~---~~~is~~dll~~~~~~~~~~~~~i~~~l~~g--~~v~de~~~~ll~~~ 134 (230)
..|.|.|+|||||||+|+.|++.+ + +..++.|+..+.... .+... ......+ ....-+.+.+.+. .
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~--~~~~~--~~~~~~d~p~a~D~~~l~~~l~-~ 78 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSN--IPESE--RAYTNYDHPKSLEHDLLTTHLR-E 78 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCccc--CCHHH--hcCCCCCChhhhCHHHHHHHHH-H
Confidence 679999999999999999998776 2 235566665432210 00000 0000000 0011112222221 1
Q ss_pred HHhc--------------------cccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCC
Q 026951 135 LEEG--------------------YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 135 l~~~--------------------~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
+... ......-+|++|+.-- . ...+.. ..|+.|++++|.++++.|...|...
T Consensus 79 L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l-~-~~~l~~--l~D~~ifvd~~~d~~~~Rr~~Rd~~ 150 (210)
T PTZ00301 79 LKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLF-T-NAELRN--EMDCLIFVDTPLDICLIRRAKRDMR 150 (210)
T ss_pred HHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhh-C-CHHHHH--hCCEEEEEeCChhHHHHHHHhhhHH
Confidence 1111 0012344667886431 1 111222 4688999999999999999999864
No 140
>PLN02348 phosphoribulokinase
Probab=98.60 E-value=1e-07 Score=85.02 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.++..|.|.|++||||||+|+.|++.++
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4778999999999999999999999886
No 141
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.58 E-value=1.3e-07 Score=64.26 Aligned_cols=23 Identities=26% Similarity=0.357 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.|+++|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999875
No 142
>PRK15453 phosphoribulokinase; Provisional
Probab=98.58 E-value=1.2e-07 Score=81.14 Aligned_cols=151 Identities=16% Similarity=0.185 Sum_probs=82.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHHHcCCCChHHHHHHHHHHCC----CCCCHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEG----KLVPEDVIFALL 131 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~~~~~~~~~~~~~i~~~l~~g----~~v~de~~~~ll 131 (230)
.++++|.|+|.|||||||+|+.|++.|+ ..+++.|+..+... .......+..-.+| .+-|+..-+.++
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr---~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL 79 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTR---PEMKAAIAKARAAGRHFSHFGPEANLFDEL 79 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccCh---hhHhhhhHHHHhcCCCCCCCCCCcccHHHH
Confidence 3678899999999999999999998774 34566666554110 00111111111122 222333333333
Q ss_pred HHHHHhccc---------------------------------cCCCeEEEeCccCCH-HHHHHHhccCCcCEEEEEecCH
Q 026951 132 SKRLEEGYY---------------------------------RGESGFILDGIPRTR-IQAEILDQIVDVDLVINFKSIE 177 (230)
Q Consensus 132 ~~~l~~~~~---------------------------------~~~~~~IlDg~p~~~-~qa~~l~~~~~~d~vI~L~~~~ 177 (230)
...+..... ....-+|++|.---. .....+. ...|+.|+++.+.
T Consensus 80 ~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr--~~~DlkIfVdp~~ 157 (290)
T PRK15453 80 EQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVA--QHVDLLIGVVPIV 157 (290)
T ss_pred HHHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHH--HhCCeeEeeCCcH
Confidence 333322100 012234445531110 0000111 2578999999999
Q ss_pred HHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHHHHHhhhh
Q 026951 178 DQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQINL 226 (230)
Q Consensus 178 e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~y~~~~~~ 226 (230)
+..+.|-..|.... .+.+.+...+.+.+|+.-|...+.|
T Consensus 158 dlr~irRI~RD~~E----------RGrs~EsVi~qilrrmPdy~~yI~P 196 (290)
T PRK15453 158 NLEWIQKIHRDTSE----------RGYSREAVMDTILRRMPDYINYITP 196 (290)
T ss_pred hHHHHHHHHhhhHh----------hCCCHHHHHHHHHHhCChHhhhCCC
Confidence 99998888887543 2334445566777788888887766
No 143
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.58 E-value=7.4e-07 Score=77.13 Aligned_cols=123 Identities=17% Similarity=0.159 Sum_probs=68.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCc-cchhHHHHHHcCC----CC--hHHHHHHHHHH--CCCCCCHH-H-----
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELSP----RS--ALYKQIANAVN--EGKLVPED-V----- 126 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~-is~~dll~~~~~~----~~--~~~~~i~~~l~--~g~~v~de-~----- 126 (230)
+|+.|+|.|++||||||+|..|++.+|+.+ ++ .|.+++.+.. +. .+......... .+..-+++ .
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~-~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~ 169 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIG-TDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE 169 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEe-chHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence 678999999999999999999999999984 55 4555543321 00 00000000010 00011111 1
Q ss_pred ---------HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcC-EEEEEec-CHHHHHHHHhcCCCCC
Q 026951 127 ---------IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVD-LVINFKS-IEDQLVKRNLESEAFS 191 (230)
Q Consensus 127 ---------~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d-~vI~L~~-~~e~l~~Rl~~R~~~~ 191 (230)
+..++...+++ +...|+.|....-.....+.. ..++ ..+++.+ +++...+|+..|....
T Consensus 170 ~~~~~v~~gi~~~I~~~~~~-----g~s~IiEGvhl~P~~i~~~~~-~~~~~i~~~l~i~~ee~h~~RF~~R~~~~ 239 (301)
T PRK04220 170 RHVEPVSVGVEAVIERALKE-----GISVIIEGVHIVPGFIKEKYL-ENPNVFMFVLTLSDEEAHKARFYARARVS 239 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----CCcEEEecCCCCHHHHHHhhh-cCCCEEEEEEEECCHHHHHHHHHHHHhhh
Confidence 23334444443 688999998665443332211 1222 3445554 5588999998887643
No 144
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.57 E-value=5.5e-07 Score=84.67 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=64.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC------CccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHH--HH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV------PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL--LS 132 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~------~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~l--l~ 132 (230)
.++..|+|+|+|||||||+|+.|++.++. .+++.| .+++.+..+......-+ +.....+ +.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er----------~~~~~~l~~~a 458 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDR----------DLNILRIGFVA 458 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHH----------HHHHHHHHHHH
Confidence 46778999999999999999999999985 777775 44554432110000000 0011111 11
Q ss_pred HHHHhccccCCCeEEEeC-ccCCHHH---HHHHhccCCcCEEEEEecCHHHHHHHHh
Q 026951 133 KRLEEGYYRGESGFILDG-IPRTRIQ---AEILDQIVDVDLVINFKSIEDQLVKRNL 185 (230)
Q Consensus 133 ~~l~~~~~~~~~~~IlDg-~p~~~~q---a~~l~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (230)
..+. ..+.++|+|. +|+.... .+.+.+. ....+|+|++|.+++.+|..
T Consensus 459 ~~v~----~~Gg~vI~~~~~p~~~~R~~nr~llk~~-g~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 459 SEIT----KNGGIAICAPIAPYRATRREVREMIEAY-GGFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred HHHH----hCCCEEEEEeCCchHHHHHHHHHHHhhc-CCEEEEEEcCCHHHHHHhcc
Confidence 1111 2367888884 5544222 2222222 22258999999999999974
No 145
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.56 E-value=1.4e-06 Score=75.38 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=56.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
.+..|+|+|++||||||+++.|. ..|+..++. +|.+++.+++........ .
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~---------------------------~~~~L~~~l~~~~~~~~~-~ 55 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN---------------------------LPPSLLPKLVELLAQSGG-I 55 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC---------------------------cCHHHHHHHHHHHHhcCC-C
Confidence 44589999999999999999995 557655532 112222223221111100 1
Q ss_pred CCCeEEEeCccCCH-----HHHHHHhccCCcCEEEEEecCHHHHHHHHhcC
Q 026951 142 GESGFILDGIPRTR-----IQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (230)
Q Consensus 142 ~~~~~IlDg~p~~~-----~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (230)
..-.+++|-..... .....+.+.+....+|+|+++.+++.+|+.++
T Consensus 56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~ 106 (288)
T PRK05416 56 RKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSET 106 (288)
T ss_pred CCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhc
Confidence 23456777532221 11122233233346899999999999999753
No 146
>PHA00729 NTP-binding motif containing protein
Probab=98.53 E-value=6.3e-07 Score=74.56 Aligned_cols=110 Identities=15% Similarity=0.049 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC--CccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~--~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
..|+|+|+||+||||+|..|++.++. ..+..++..+.... ....++-+.+...+....... .
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~--------------~~~fid~~~Ll~~L~~a~~~~--~ 81 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQ--------------NSYFFELPDALEKIQDAIDND--Y 81 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCC--------------cEEEEEHHHHHHHHHHHHhcC--C
Confidence 47999999999999999999998752 22323222211100 111223333344444333321 1
Q ss_pred CCCeEEEeCccCCHHH---H-------HHHhcc--CCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 142 GESGFILDGIPRTRIQ---A-------EILDQI--VDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~q---a-------~~l~~~--~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
...-+|||++..-... . ..+.+. ...++++++.++++.+.+++.+|+.
T Consensus 82 ~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 82 RIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred CCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence 1123688973211110 0 012121 1478899999999999999999875
No 147
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.53 E-value=4.1e-08 Score=79.94 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
+|.|.|++||||||+|+.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999987
No 148
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.52 E-value=8.2e-08 Score=78.26 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=29.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVR 99 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~---~~~~is~~dll~ 99 (230)
.|.|.|++||||||+++.|+..+ ++.++++|++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 37899999999999999999887 467788887654
No 149
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.52 E-value=1e-07 Score=91.98 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~ 101 (230)
.+|.|.|||||||||+|+.||+++|+.|++++.+.+..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 47999999999999999999999999999999888763
No 150
>PRK05439 pantothenate kinase; Provisional
Probab=98.51 E-value=6.6e-07 Score=77.97 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=31.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHHH
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~-------~~~is~~dll 98 (230)
..++.+|.|.|+|||||||+|+.|+..++ +..+++|+.+
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 35788999999999999999999988653 4567777765
No 151
>PLN02772 guanylate kinase
Probab=98.48 E-value=2.9e-06 Score=75.83 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHHHcC---CCCh----HHHHHHHHHHCCCCCCH--------H
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELS---PRSA----LYKQIANAVNEGKLVPE--------D 125 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~-~~is~~dll~~~~~---~~~~----~~~~i~~~l~~g~~v~d--------e 125 (230)
....++|+||+||||+|+.+.|.+.+.. ..+++...-|.... .+.. .-+.....+.+|..+.- .
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 5668999999999999999999886632 22222211111100 0000 00223344444443321 1
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEE--ecCHHHHHHHHhcCCCCCCccchhccCCCC
Q 026951 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINF--KSIEDQLVKRNLESEAFSPHKEFLRLGGAR 203 (230)
Q Consensus 126 ~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L--~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~ 203 (230)
+..+.+...+.+ +..+|+|--| ..+..+.... ++.++++ ..+.+++.+|+..|..
T Consensus 214 Tsk~~V~~vl~~-----Gk~vILdLD~---qGar~Lr~~~-l~~v~IFI~PPSlEeLe~RL~~RGt-------------- 270 (398)
T PLN02772 214 TSIEAVEVVTDS-----GKRCILDIDV---QGARSVRASS-LEAIFIFICPPSMEELEKRLRARGT-------------- 270 (398)
T ss_pred ccHHHHHHHHHh-----CCcEEEeCCH---HHHHHHHHhc-CCeEEEEEeCCCHHHHHHHHHhcCC--------------
Confidence 223334444444 5778888433 3333333321 2333333 3347999999999875
Q ss_pred CCCCCcHHHHHHHHHHHHHhh
Q 026951 204 FSAADAASAWKEKFRIYAEQI 224 (230)
Q Consensus 204 ~~~dd~~~~~~~rl~~y~~~~ 224 (230)
++++.+++||+.+.++.
T Consensus 271 ----eseE~I~kRL~~A~~Ei 287 (398)
T PLN02772 271 ----ETEEQIQKRLRNAEAEL 287 (398)
T ss_pred ----CCHHHHHHHHHHHHHHH
Confidence 24678899998886543
No 152
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.48 E-value=6.3e-07 Score=74.89 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.++..|.|.|++||||||+++.|+..+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4788999999999999999999988764
No 153
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.44 E-value=2.9e-06 Score=81.35 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=36.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~ 101 (230)
+.++|.|.||+||||||+++.|++++|++|++++.+.|..
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 3568999999999999999999999999999999998865
No 154
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.43 E-value=5.8e-07 Score=77.18 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=27.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLV 98 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~---~~~~is~~dll 98 (230)
.|.|+|++||||||+++.|+..+ +...++.|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 37899999999999999999876 45567777654
No 155
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.41 E-value=5.2e-07 Score=72.72 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=31.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQ 100 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~dll~~ 100 (230)
.|.|.|+|||||||+|+.|++.+ ++.+|++|++.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 37899999999999999999986 4678899988863
No 156
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.37 E-value=3e-06 Score=67.55 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=62.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh---CCCccch-hHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHH--HHHH
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISM-GSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA--LLSK 133 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~---~~~~is~-~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~--ll~~ 133 (230)
..++..|-|+|.+||||||+|..|.+++ |...+-. +|-+|.-+..+-..... + -.+.+.+ .+.+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~e--d--------R~eniRRvaevAk 89 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSRE--D--------RIENIRRVAEVAK 89 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChH--H--------HHHHHHHHHHHHH
Confidence 3577889999999999999999999877 4432222 36666655432111000 0 0012222 2333
Q ss_pred HHHhccccCCCeEEEeCccCCHHHHHHH-hcc-C-CcCEEEEEecCHHHHHHHHh
Q 026951 134 RLEEGYYRGESGFILDGIPRTRIQAEIL-DQI-V-DVDLVINFKSIEDQLVKRNL 185 (230)
Q Consensus 134 ~l~~~~~~~~~~~IlDg~p~~~~qa~~l-~~~-~-~~d~vI~L~~~~e~l~~Rl~ 185 (230)
.|.. ...++|..|-.-......+ .+. . ...+=||++||.++|.+|=-
T Consensus 90 ll~d-----aG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDp 139 (197)
T COG0529 90 LLAD-----AGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDP 139 (197)
T ss_pred HHHH-----CCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCc
Confidence 3443 3445555554443332222 222 2 23568999999999998853
No 157
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.36 E-value=2.5e-07 Score=77.05 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=27.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~-------~~~is~~dll 98 (230)
+|.|.|++||||||+|+.|+..+. +.++++|+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 378999999999999999998873 3456667653
No 158
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.35 E-value=3.3e-06 Score=80.62 Aligned_cols=107 Identities=12% Similarity=0.022 Sum_probs=65.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHH----HHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED----VIFALL 131 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de----~~~~ll 131 (230)
.++..|+++|.|||||||+|+.|++.+ ++.+++.|+ ++..+..+ ....++ .+..+.
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~-~r~~l~~~--------------~~~~~~~r~~~~~~l~ 522 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN-VRHGLNRD--------------LGFSDADRVENIRRVA 522 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh-hhhccCCC--------------CCCCHHHHHHHHHHHH
Confidence 368899999999999999999999987 345676655 44433221 111111 112221
Q ss_pred HHHHHhccccCCCeEEEeCccCCHHHHHHHhccC--CcCEEEEEecCHHHHHHHH
Q 026951 132 SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRN 184 (230)
Q Consensus 132 ~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl 184 (230)
...... ...+..+|+|.......+.+.+.+.. ....+|+|++|.+++.+|.
T Consensus 523 ~~a~~~--~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 523 EVARLM--ADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred HHHHHH--HhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC
Confidence 111110 12356788886543445555555432 2347999999999999995
No 159
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.35 E-value=9e-06 Score=69.61 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
..|+|+|.+||||||..+.| +.+|+..|+. +|..++..+++...........
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~ 53 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEK 53 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCce
Confidence 46899999999999988877 6788776633 4445555555332211111123
Q ss_pred CeEEEeCccCCHH-H-HHHHhcc--CCcC-EEEEEecCHHHHHHHHhc-CCCCC
Q 026951 144 SGFILDGIPRTRI-Q-AEILDQI--VDVD-LVINFKSIEDQLVKRNLE-SEAFS 191 (230)
Q Consensus 144 ~~~IlDg~p~~~~-q-a~~l~~~--~~~d-~vI~L~~~~e~l~~Rl~~-R~~~~ 191 (230)
-.+++|--..... . .+.+.++ ..++ .+|||+|+++++.+|... |+.||
T Consensus 54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HP 107 (284)
T PF03668_consen 54 VAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHP 107 (284)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCC
Confidence 4466773222111 1 1111111 1333 599999999999999974 55666
No 160
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.30 E-value=2.6e-07 Score=74.46 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=36.2
Q ss_pred hHhhhhhhccchhhhh----cccCCccccccccCCCccccccccCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHh----
Q 026951 16 RQIARSRAYGSAAAAQ----LQYDYDEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLL---- 87 (230)
Q Consensus 16 ~~~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivl~G~pGsGKsT~a~~La~~~---- 87 (230)
||+++....+.+|... |||+.... . ............|..++..++|.|+||+|||++|..+++++
T Consensus 2 r~~~~~l~~a~lp~~~~~~~~d~~~~~~--~----~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g 75 (178)
T PF01695_consen 2 RRIERRLKQAGLPPDATLENFDFSNERG--I----DKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRKG 75 (178)
T ss_dssp --------------------------------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred Ccccccccccccccccccccccccchhh--H----HHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCC
Confidence 5566667777777433 44443321 1 11222222334566678899999999999999999998644
Q ss_pred -CCCccchhHHHHHHc
Q 026951 88 -EVPHISMGSLVRQEL 102 (230)
Q Consensus 88 -~~~~is~~dll~~~~ 102 (230)
.+.++++.+|+....
T Consensus 76 ~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 76 YSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEHHHHHHHHH
T ss_pred cceeEeecCceecccc
Confidence 467888989887653
No 161
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.30 E-value=2.4e-06 Score=73.89 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=28.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~-------~~~is~~dll 98 (230)
..+.+|.|.|++||||||+|+.|...+. +..+++|+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 4678999999999999999998866553 3456666543
No 162
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.29 E-value=1.2e-06 Score=74.59 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=39.0
Q ss_pred CcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHHHHHhhhhh
Q 026951 166 DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIYAEQINLT 227 (230)
Q Consensus 166 ~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~y~~~~~~~ 227 (230)
..|+.|+++.+.+..+.|-..|.... .+.+.+...+.+.+|+..|...+.|-
T Consensus 140 ~~DlkIfVd~~~dlr~irRI~RD~~E----------RGrs~EsVi~qilrrmpdy~~yI~PQ 191 (277)
T cd02029 140 HADLLVGVVPIINLEWIQKIHRDTAE----------RGYSAEAVMDTILRRMPDYINYICPQ 191 (277)
T ss_pred hCCeEEEecCcHHHHHHHHHHhhhHh----------hCCCHHHHHHHHHHhCchHHhhCCcc
Confidence 56999999999999998888887543 23344555667788888888887763
No 163
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.29 E-value=4.4e-06 Score=67.30 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=72.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCc-cchhHHHHHHcC---CCCh----HHHHHHHHHHCCCCCCH--------HH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELS---PRSA----LYKQIANAVNEGKLVPE--------DV 126 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~-is~~dll~~~~~---~~~~----~~~~i~~~l~~g~~v~d--------e~ 126 (230)
+..|+|+||+||||+|+++.|.+.+.-.+ ..+...-|.-.. .+.. -.+.....+..|..+.- .+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 46699999999999999999998774211 111000111000 0000 01223333333332210 01
Q ss_pred HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecC-HHHHHHHHhcCCCCCCccchhccCCCCCC
Q 026951 127 IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGARFS 205 (230)
Q Consensus 127 ~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~ 205 (230)
...-+...+.+ ++..|+|.-| .-+..|.....--.+|++.++ .+.+.+|+..|..
T Consensus 82 ~~~~i~~~~~~-----gk~~il~~~~---~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~---------------- 137 (183)
T PF00625_consen 82 SKSAIDKVLEE-----GKHCILDVDP---EGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGD---------------- 137 (183)
T ss_dssp EHHHHHHHHHT-----TTEEEEEETH---HHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTH----------------
T ss_pred ccchhhHhhhc-----CCcEEEEccH---HHHHHHHhcccCceEEEEEccchHHHHHHHhcccc----------------
Confidence 12333444444 5678887443 333444443222358888777 5777777766652
Q ss_pred CCCcHHHHHHHHHHHHHhhhh
Q 026951 206 AADAASAWKEKFRIYAEQINL 226 (230)
Q Consensus 206 ~dd~~~~~~~rl~~y~~~~~~ 226 (230)
++.+.+.+|+..+....+.
T Consensus 138 --~~~~~i~~r~~~~~~~~~~ 156 (183)
T PF00625_consen 138 --ESEEEIEERLERAEKEFEH 156 (183)
T ss_dssp --CHHHHHHHHHHHHHHHHGG
T ss_pred --ccHHHHHHHHHHHHHHHhH
Confidence 3556778888777665443
No 164
>PLN02165 adenylate isopentenyltransferase
Probab=98.26 E-value=5.6e-06 Score=72.66 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=33.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dl 97 (230)
.++.+|+|+||+||||||++..|++.++..+|++|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 4667899999999999999999999999999999876
No 165
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.22 E-value=2.8e-06 Score=72.20 Aligned_cols=90 Identities=24% Similarity=0.254 Sum_probs=58.1
Q ss_pred hHHHHHhhhhhHhhhhhhccchhhhh----cccCCccccccccCCCccccccccCC-CCCCCCeEEEEEcCCCCChhHHH
Q 026951 6 RLRAAAALQLRQIARSRAYGSAAAAQ----LQYDYDEECDLHGQASEPMLRLDSAG-SPPRRGVQWVLIGDPGVKKHVYA 80 (230)
Q Consensus 6 ~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ivl~G~pGsGKsT~a 80 (230)
+-+..++.. +...++...++.|..+ |||+..+... .......... .+-.++..++|.|+||+|||+++
T Consensus 50 ~~~~~~~~~-r~~~~~~~~a~~p~~k~~~~~d~~~~~~~~------~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa 122 (254)
T COG1484 50 EEEKLAREA-RKIERRLRSASFPAKKTFEEFDFEFQPGID------KKALEDLASLVEFFERGENLVLLGPPGVGKTHLA 122 (254)
T ss_pred HHHHHHHHH-HHHHHHHHHhcCCccCCcccccccCCcchh------HHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHH
Confidence 334444554 5556677778888765 6776665321 1111111111 13347788999999999999999
Q ss_pred HHHHHHh---C--CCccchhHHHHHHc
Q 026951 81 DNLSKLL---E--VPHISMGSLVRQEL 102 (230)
Q Consensus 81 ~~La~~~---~--~~~is~~dll~~~~ 102 (230)
..|+..+ | +.++++.+++.+..
T Consensus 123 ~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 123 IAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred HHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 9997765 3 46788888887654
No 166
>PRK09169 hypothetical protein; Validated
Probab=98.10 E-value=2.1e-05 Score=81.73 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
..|+|+|.+|+||||+.+.|++.+++.+++.+..+.+. .+..|.+++.... ...+.-...+...+. .
T Consensus 2111 ~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks------~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr------~ 2177 (2316)
T PRK09169 2111 QARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKK------IGKKIARIQALRG-LSPEQAAARVRDALR------W 2177 (2316)
T ss_pred cccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHH------hCCCHHHHHHhcC-chHHHHHHHHHHHhc------C
Confidence 47999999999999999999999999999999888764 4456777765444 555554555544332 1
Q ss_pred CeEEE--eCccCC-HHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCC-Cc--cchhccCCCCCCCCCcHHHHHHHH
Q 026951 144 SGFIL--DGIPRT-RIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFS-PH--KEFLRLGGARFSAADAASAWKEKF 217 (230)
Q Consensus 144 ~~~Il--Dg~p~~-~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~-~~--~~~~~~~~~~~~~dd~~~~~~~rl 217 (230)
.+|| .|+-.. ......|.+. .++|++..+.+++.+|+.+..-.+ .+ +..|.+- +-..+..+.+++|.
T Consensus 2178 -~vVLSTGGGav~~~enr~~L~~~---GlvV~L~an~~tl~~Rty~g~NRPLL~~~~~~FEiQ---FHT~esl~Lk~eRh 2250 (2316)
T PRK09169 2178 -EVVLPAEGFGAAVEQARQALGAK---GLRVMRINNGFAAPDTTYAGLNVNLRTAAGLDFEIQ---FHTADSLRTKNKTH 2250 (2316)
T ss_pred -CeEEeCCCCcccCHHHHHHHHHC---CEEEEEECCHHHHHHHhccCCCCccccCCCCccchh---ccHHHHHHHHHHhH
Confidence 3333 233322 2222333332 469999999999999997542111 01 1111110 01134567788899
Q ss_pred HHHHHhhhhhhc
Q 026951 218 RIYAEQINLTIS 229 (230)
Q Consensus 218 ~~y~~~~~~~i~ 229 (230)
..|.+..+..++
T Consensus 2251 pLYEqvADl~V~ 2262 (2316)
T PRK09169 2251 KLYEKLQDLEVA 2262 (2316)
T ss_pred HHHHHhcCcccc
Confidence 999887765543
No 167
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=2.1e-05 Score=66.07 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL 102 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~ 102 (230)
.+|.+|+|-|+||+||||+|.-||..+|+.++--.|.+|+.+
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvl 128 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVL 128 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHH
Confidence 356778888899999999999999999998765555566544
No 168
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.01 E-value=3.3e-06 Score=63.39 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=25.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
|+|.||||+||||+++.+++.++++++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 68999999999999999999999766544
No 169
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.01 E-value=2.9e-05 Score=74.65 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
....++++|.||+||||+++.|++.+++..+++
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~ 246 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQS 246 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCc
Confidence 345899999999999999999999986655544
No 170
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.00 E-value=3.8e-05 Score=65.36 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+....++|.||||+||||+|+.+++.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 355679999999999999999999865
No 171
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.00 E-value=4e-06 Score=67.06 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC--CCccchhH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGS 96 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~--~~~is~~d 96 (230)
+.++|+|+|||||||+|..+++.++ +.|++++.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 4699999999999999999999886 45666643
No 172
>PRK06761 hypothetical protein; Provisional
Probab=97.97 E-value=2.9e-05 Score=66.89 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~ 95 (230)
+..|+|.|+|||||||+++.|++.++...++++
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 467999999999999999999999876555443
No 173
>PHA03136 thymidine kinase; Provisional
Probab=97.95 E-value=0.00032 Score=62.41 Aligned_cols=25 Identities=8% Similarity=-0.069 Sum_probs=22.9
Q ss_pred CcCEEEEEecCHHHHHHHHhcCCCC
Q 026951 166 DVDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 166 ~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
.+|.+|+|+++++++.+|+.+|...
T Consensus 191 ~pD~IIyL~l~~e~~~~RI~kRgR~ 215 (378)
T PHA03136 191 HGGNIVIMDLDECEHAERIIARGRP 215 (378)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCC
Confidence 5899999999999999999999863
No 174
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.95 E-value=1.8e-05 Score=67.31 Aligned_cols=28 Identities=29% Similarity=0.237 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
...+.+|.+.|+||+||||.|+.|+..+
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 4578899999999999999999998766
No 175
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.94 E-value=3.3e-05 Score=62.78 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=75.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHHHc--CC--C-------------ChHHHHHHHHHHCCCCCC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQEL--SP--R-------------SALYKQIANAVNEGKLVP 123 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~-~~~~is~~dll~~~~--~~--~-------------~~~~~~i~~~l~~g~~v~ 123 (230)
+-.+|.|.|.+.|||||+|+.|.+.| |+..|+-||...-.- .. + ....+.|...+.+....|
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 34678899999999999999999988 678888877654221 10 0 012344555555544443
Q ss_pred HHHHHHHHH--------HHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCC
Q 026951 124 EDVIFALLS--------KRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFS 191 (230)
Q Consensus 124 de~~~~ll~--------~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (230)
+- ...++. +... .......-+|+|||-....-. .....|..|++..|.+++.+|-..|...+
T Consensus 83 ~a-r~~~v~~~~~~~~~~~~q-~~~~~~~iviidGfmiy~y~p----~~~~~d~~im~~~~y~~~krRr~~Rt~y~ 152 (225)
T KOG3308|consen 83 EA-REHLVSYANFEHYAQQFQ-IKAYKNHIVIIDGFMIYNYKP----QVDLFDRIIMLTLDYETCKRRREARTYYP 152 (225)
T ss_pred hH-hhhhhhhhHHHHHhhhcC-cccccCcEEEEecceEEecch----hhhhhhhheeeeccHHHHHHhhcccccCC
Confidence 31 111111 1111 111223458999985332210 01145779999999999999999998755
No 176
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.89 E-value=0.0001 Score=68.21 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+.-|+|.||||+|||++|+.+|+.++++++.+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 445699999999999999999999999887664
No 177
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.86 E-value=1.8e-05 Score=77.50 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=37.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~ 101 (230)
.+++|.|.|||||||||+|+.||++|++.|++++.+.|..
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 4468999999999999999999999999999999998865
No 178
>CHL00181 cbbX CbbX; Provisional
Probab=97.84 E-value=6.6e-05 Score=65.00 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C------CCccchhHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E------VPHISMGSLVRQE 101 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~---~------~~~is~~dll~~~ 101 (230)
..+..++|.||||+||||+|+.+++.+ | +..++.++++...
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~ 106 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQY 106 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHH
Confidence 356779999999999999999998865 2 2344555665443
No 179
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.84 E-value=1.5e-05 Score=69.50 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dl 97 (230)
++..|+|+||+|||||++|..|++.++..+||.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 557899999999999999999999999998888763
No 180
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=6e-05 Score=70.30 Aligned_cols=124 Identities=21% Similarity=0.235 Sum_probs=72.3
Q ss_pred CCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh--HHHHHHcCCCChHHHHHHHHHHCCC--------------
Q 026951 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG--SLVRQELSPRSALYKQIANAVNEGK-------------- 120 (230)
Q Consensus 57 ~~~~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~--dll~~~~~~~~~~~~~i~~~l~~g~-------------- 120 (230)
|-.|+++ |+|-||||||||.+|..+|.+++++++++. +++-.. .. +--+.|++.+.+-.
T Consensus 219 Gv~PprG--vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv-SG--ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 219 GVRPPRG--VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV-SG--ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred CCCCCCc--eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc-Cc--ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 3344454 889999999999999999999999998764 333221 11 12244554443211
Q ss_pred ------CCCHHHHHHHHHHHHHhccc-----cCCCeEEEeC-ccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHh
Q 026951 121 ------LVPEDVIFALLSKRLEEGYY-----RGESGFILDG-IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL 185 (230)
Q Consensus 121 ------~v~de~~~~ll~~~l~~~~~-----~~~~~~IlDg-~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (230)
..-.++-.+++.+.+...+. ..+.++++=| ..|--.-.-.|...+.+|.=|-|.+|.++..+++.
T Consensus 294 I~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL 370 (802)
T KOG0733|consen 294 ITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEIL 370 (802)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHH
Confidence 11113334444444432211 1134555533 32322222345666789999999999988887775
No 181
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00017 Score=65.29 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh----C--CCccchhHHHHHHcCCCChHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMGSLVRQELSPRSALYKQIANAVNEGKL--VPEDVIFALLSK 133 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~----~--~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~--v~de~~~~ll~~ 133 (230)
++..++|+||+||||||++..|+..+ | +..++.| ..+.. ...+++.+...... .+..... .+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D-t~R~a------A~eQLk~yAe~lgvp~~~~~~~~-~l~~ 293 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD-NYRIA------AIEQLKRYADTMGMPFYPVKDIK-KFKE 293 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc-chhhh------HHHHHHHHHHhcCCCeeehHHHH-HHHH
Confidence 46679999999999999999998755 2 3344443 33321 01223332222111 1111122 2233
Q ss_pred HHHhccccCCCeEEEe--Ccc-CCHHHHHHHhccC-------CcCEEEEEecCH
Q 026951 134 RLEEGYYRGESGFILD--GIP-RTRIQAEILDQIV-------DVDLVINFKSIE 177 (230)
Q Consensus 134 ~l~~~~~~~~~~~IlD--g~p-~~~~qa~~l~~~~-------~~d~vI~L~~~~ 177 (230)
.+.. .....+||| |++ ++..+.+.|..+. ....+++|++..
T Consensus 294 ~l~~---~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 294 TLAR---DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred HHHh---CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 3332 234668999 764 6778887775431 224566666554
No 182
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.80 E-value=0.00059 Score=53.96 Aligned_cols=127 Identities=14% Similarity=0.086 Sum_probs=71.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC-CCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCCC
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLE-VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGES 144 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~-~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~~ 144 (230)
|+=++.+||||||+|..|++-|| +.|+-.|++-.+ -+... .+.+...+.+ ....
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k---------------------~~~~f-~~~~l~~L~~---~~~~ 56 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGK---------------------RKPKF-IKAVLELLAK---DTHP 56 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC---------------------CHHHH-HHHHHHHHhh---CCCC
Confidence 45578999999999999999999 999988765321 01111 1112233422 2356
Q ss_pred eEEEeCccCCHHHHHHHhcc---CCc-------C--E-EEEEecC--H----HHHHHHHhcCCCCCCccchhccCCCCCC
Q 026951 145 GFILDGIPRTRIQAEILDQI---VDV-------D--L-VINFKSI--E----DQLVKRNLESEAFSPHKEFLRLGGARFS 205 (230)
Q Consensus 145 ~~IlDg~p~~~~qa~~l~~~---~~~-------d--~-vI~L~~~--~----e~l~~Rl~~R~~~~~~~~~~~~~~~~~~ 205 (230)
-+|.|.-.......+.+..+ ..+ + + .+++.-+ . +++.+|+.+|+-...| - +
T Consensus 57 vViaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQT---------i-k 126 (168)
T PF08303_consen 57 VVIADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQT---------I-K 126 (168)
T ss_pred EEEEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcce---------e-e
Confidence 78889766665555544211 111 1 1 2222221 1 6788899999843211 1 1
Q ss_pred CCC-cHHHHHHHHHHHHHhhhhh
Q 026951 206 AAD-AASAWKEKFRIYAEQINLT 227 (230)
Q Consensus 206 ~dd-~~~~~~~rl~~y~~~~~~~ 227 (230)
.+. ....+..-|.-|-...+|+
T Consensus 127 a~~~~~~~~~~Im~gFi~rfep~ 149 (168)
T PF08303_consen 127 ADSKDEKKVEGIMEGFIKRFEPV 149 (168)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCC
Confidence 111 3456666666666666654
No 183
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.80 E-value=5.3e-05 Score=71.04 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSL 97 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~-~~~~is~~dl 97 (230)
....|.|.|++||||||+++.|+..+ +...|++|+.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 56889999999999999999999887 4567777764
No 184
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.79 E-value=5.6e-05 Score=62.19 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHH-HcCCCC--hHHHHH---------HHHHHCCCCCCHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ-ELSPRS--ALYKQI---------ANAVNEGKLVPEDVIFALL 131 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~-~~~~~~--~~~~~i---------~~~l~~g~~v~de~~~~ll 131 (230)
..++|.||+|+|||.+|-.||+++|.++|+.|-+..- .+..++ +..... ...+..|. ++.+...+.+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L 80 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL 80 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence 4689999999999999999999999999998754321 222111 100000 11233444 4444555555
Q ss_pred HHHHHhccccCCCeEEEeCccCCHHHHHHHhc-cCCc--CEEEEEecCH-HHHHHHHhcC
Q 026951 132 SKRLEEGYYRGESGFILDGIPRTRIQAEILDQ-IVDV--DLVINFKSIE-DQLVKRNLES 187 (230)
Q Consensus 132 ~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~-~~~~--d~vI~L~~~~-e~l~~Rl~~R 187 (230)
...+.... .+.++|++|-..+.-..-.-+. +..+ -.+..+.+++ +.-+.|..+|
T Consensus 81 i~~v~~~~--~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 81 ISEVNSYS--AHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp HHHHHTTT--TSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred HHHHHhcc--ccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 56666543 3789999986444332211111 2122 2477788877 4445555544
No 185
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.78 E-value=0.00026 Score=56.94 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=59.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCC-Ch------HHHHHH--HH---HHCC-------CCCCHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR-SA------LYKQIA--NA---VNEG-------KLVPED 125 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~-~~------~~~~i~--~~---l~~g-------~~v~de 125 (230)
+|.|.+..|||++++|+.||+++|+++++- +++.+..... -+ ..+... .+ +..+ ....++
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 478999999999999999999999999998 7776543310 00 011111 11 1111 112233
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 126 ~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
.+.....+.+.+. ....++|+.|.- +..+-.-....+-|+|.+|.+...+|+++|.
T Consensus 80 ~~~~~~~~~i~~l--a~~~~~Vi~GR~-----a~~il~~~~~~l~V~i~A~~~~Rv~ri~~~~ 135 (179)
T PF13189_consen 80 KIFRAQSEIIREL--AAKGNCVIVGRC-----ANYILRDIPNVLHVFIYAPLEFRVERIMERE 135 (179)
T ss_dssp HHHHHHHHHHHHH--HH---EEEESTT-----HHHHTTT-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hccCCEEEEecC-----HhhhhCCCCCeEEEEEECCHHHHHHHHHHHc
Confidence 4444333333332 113467776641 1111111123579999999999999999984
No 186
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.77 E-value=0.00012 Score=56.43 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
|+|+||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999998764
No 187
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.76 E-value=2.7e-05 Score=61.23 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
...++|+|+|+|||||||++..+++.+.-.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 367899999999999999999999877433
No 188
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.72 E-value=0.00011 Score=55.11 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=44.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh--------CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCC--CHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL--------EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV--PEDVIFALL 131 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~--------~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v--~de~~~~ll 131 (230)
+...++|.|+||+|||++++.+++.+ +...+.+.- .... ....+...+...+.....- +.+.+.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNC--PSSR-TPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEH--HHHS-SHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEe--CCCC-CHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 34569999999999999999999876 333332210 0010 1123344455444433222 334445666
Q ss_pred HHHHHhccccCCCeEEEeCcc
Q 026951 132 SKRLEEGYYRGESGFILDGIP 152 (230)
Q Consensus 132 ~~~l~~~~~~~~~~~IlDg~p 152 (230)
.+.+... ...-+|||.+=
T Consensus 80 ~~~l~~~---~~~~lviDe~~ 97 (131)
T PF13401_consen 80 IDALDRR---RVVLLVIDEAD 97 (131)
T ss_dssp HHHHHHC---TEEEEEEETTH
T ss_pred HHHHHhc---CCeEEEEeChH
Confidence 6777763 12367888753
No 189
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.71 E-value=3.2e-05 Score=57.53 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+..++|+||||+||||++..|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4579999999999999999999987654
No 190
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.70 E-value=3.5e-05 Score=69.61 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~d 96 (230)
.+..|+|+||||+|||++|+.|++.++++++.++.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 45679999999999999999999999999888874
No 191
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.70 E-value=4.8e-05 Score=68.75 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~d 96 (230)
.+..|+|+||||+|||++|+.|++.++++++.++.
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 35679999999999999999999999998888864
No 192
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.70 E-value=9.8e-05 Score=62.99 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
+..++|.|+||+|||++|+.|++.+|.+++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 345889999999999999999999987766
No 193
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00042 Score=65.16 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHHHc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL 102 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~--~dll~~~~ 102 (230)
.+|.-|++.||||||||++|+.||+.-++.++++ .+|+-...
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v 509 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV 509 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc
Confidence 4666799999999999999999999988887776 35555443
No 194
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.67 E-value=2.1e-05 Score=61.95 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
+|+|+|+||+||||+++.|++. |++++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 5899999999999999999988 88766
No 195
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.00069 Score=53.36 Aligned_cols=112 Identities=14% Similarity=0.054 Sum_probs=59.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH-h-CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKL-L-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~-~-~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~ 140 (230)
+...++-|+.||||||+-..+--. + ++.+|+.|++.-+. .+..+....|+.. ......+...+..
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i-~p~~p~~~~i~A~---------r~ai~~i~~~I~~--- 68 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI-SPDNPTSAAIQAA---------RVAIDRIARLIDL--- 68 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc-CCCCchHHHHHHH---------HHHHHHHHHHHHc---
Confidence 566888999999999987765333 3 57888998777654 3333322222210 1222222222332
Q ss_pred cCCCeEEEeCccCCHHHHHHHh---ccCCcCEEEEEecC-HHHHHHHHhcCCC
Q 026951 141 RGESGFILDGIPRTRIQAEILD---QIVDVDLVINFKSI-EDQLVKRNLESEA 189 (230)
Q Consensus 141 ~~~~~~IlDg~p~~~~qa~~l~---~~~~~d~vI~L~~~-~e~l~~Rl~~R~~ 189 (230)
+.+|..+..-....-.+.+. +.+..-...++-++ .+...+|+..|-.
T Consensus 69 --~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa 119 (187)
T COG4185 69 --GRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVA 119 (187)
T ss_pred --CCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHh
Confidence 56676664433333333332 22222223333333 4688899988854
No 196
>PLN02840 tRNA dimethylallyltransferase
Probab=97.66 E-value=4.6e-05 Score=68.93 Aligned_cols=36 Identities=31% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~d 96 (230)
.++..|+|+||+||||||++..|++.++..+|++|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 356689999999999999999999999988888875
No 197
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00059 Score=53.83 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
++..|+++||+|+||-|+.......+.
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~ 30 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLA 30 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhc
Confidence 678899999999999999998877763
No 198
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=97.63 E-value=0.0009 Score=56.54 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=58.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
..|+|+|.+|||||+-.+.| +.+|+..++. +|.+++-+++.-..........
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCce
Confidence 36899999999999988877 6677765532 3444544444322111101123
Q ss_pred CeEEEeCccC----CHHHH-HHHhccCCcC-EEEEEecCHHHHHHHHhc-CCCCC
Q 026951 144 SGFILDGIPR----TRIQA-EILDQIVDVD-LVINFKSIEDQLVKRNLE-SEAFS 191 (230)
Q Consensus 144 ~~~IlDg~p~----~~~qa-~~l~~~~~~d-~vI~L~~~~e~l~~Rl~~-R~~~~ 191 (230)
-.+++|--.+ ...+. ..+.+...++ -+++|+++++++.+|..+ |+.||
T Consensus 54 vAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HP 108 (286)
T COG1660 54 VAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHP 108 (286)
T ss_pred EEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCC
Confidence 4577773222 11111 1222221223 499999999999999974 55566
No 199
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.62 E-value=4.6e-05 Score=63.30 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
...++|.||||+||||+|..+|+.++..+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 346999999999999999999999987654
No 200
>PF05729 NACHT: NACHT domain
Probab=97.57 E-value=8.6e-05 Score=57.70 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++|.|+||+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 58999999999999999998766
No 201
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=5.4e-05 Score=65.80 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
-...|++.||||.|||++|+.||+++.+.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 45679999999999999999999999764
No 202
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.56 E-value=5.2e-05 Score=65.48 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=29.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~d 96 (230)
.|+|+||+|||||+++..|++.++..+||+|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 37999999999999999999999999999876
No 203
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.55 E-value=0.00029 Score=60.83 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|.||||+||||+|+.+++.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34569999999999999998887755
No 204
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.54 E-value=5.5e-05 Score=57.85 Aligned_cols=27 Identities=41% Similarity=0.626 Sum_probs=24.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
|+|.|+||+|||++++.+++.++.+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 799999999999999999999986654
No 205
>PLN02748 tRNA dimethylallyltransferase
Probab=97.52 E-value=7.5e-05 Score=68.56 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~d 96 (230)
.++..|+|+||+|||||+++..||+.++..+|+.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 466789999999999999999999999999999874
No 206
>PRK09087 hypothetical protein; Validated
Probab=97.48 E-value=0.00073 Score=56.46 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=61.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
...++|.|++||||||++..+++..++.+++.+++............-.+.+ +.. .....+.+..++....+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDD-i~~-~~~~~~~lf~l~n~~~~~----- 116 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIED-IDA-GGFDETGLFHLINSVRQA----- 116 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEEC-CCC-CCCCHHHHHHHHHHHHhC-----
Confidence 3458999999999999999999999998998864433221100000000000 000 011234455555443332
Q ss_pred CCeEEEeCc--cCCHHH-HHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 143 ESGFILDGI--PRTRIQ-AEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 143 ~~~~IlDg~--p~~~~q-a~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
++.+|+.+- |..... ...+.....--.++.|+.|++.....+.++.
T Consensus 117 g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 117 GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 456676542 221111 1112222233468888888875555555543
No 207
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.48 E-value=0.00011 Score=60.92 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCc-cchhHHHHHHcC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPH-ISMGSLVRQELS 103 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~-is~~dll~~~~~ 103 (230)
++|+|+|.|||||||+|+.+. +.|.++ +++++.++..+.
T Consensus 1 miI~i~G~~gsGKstva~~~~-~~g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFII-ENYNAVKYQLADPIKEILA 40 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHH-hcCCcEEEehhHHHHHHHH
Confidence 469999999999999999885 556666 999998887553
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.47 E-value=9e-05 Score=65.73 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~ 89 (230)
+...++|.||||+||||+|+.|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5577899999999999999999998865
No 209
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.43 E-value=0.00018 Score=55.18 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
..+..|+|.|+.|+||||+++.+++.+|+.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 356789999999999999999999999864
No 210
>PRK12377 putative replication protein; Provisional
Probab=97.42 E-value=0.00042 Score=58.76 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQ 100 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~---~--~~~is~~dll~~ 100 (230)
...++|.|+||+|||+++..++..+ | +.++++.+++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 3469999999999999999998876 2 456777777764
No 211
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0012 Score=63.58 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=31.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchh--HHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMG--SLVRQE 101 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~--dll~~~ 101 (230)
=++|+||||+|||.+|+.+|.+-|+|++++. +.+.-.
T Consensus 346 GvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 346 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred ceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 3899999999999999999999999999764 555543
No 212
>PRK06620 hypothetical protein; Validated
Probab=97.38 E-value=0.0006 Score=56.47 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
..++|.|||||||||+++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 458999999999999999999888765554
No 213
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.37 E-value=0.00018 Score=53.95 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+..++|.|+||+||||+++.+++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999999887
No 214
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.37 E-value=0.00016 Score=64.42 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQE 101 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~i--s~~dll~~~ 101 (230)
..|..++|.||||+|||.+|+.+++++|+.+| +.++|+...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 46678899999999999999999999998755 555666443
No 215
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.36 E-value=0.00014 Score=63.88 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
+..|+|.|+||+||||+++.||+.+|.+++.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 3459999999999999999999999988763
No 216
>PRK06893 DNA replication initiation factor; Validated
Probab=97.36 E-value=0.00035 Score=58.42 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~ 95 (230)
...++|.||||+|||+++..++..+ ++.++++.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 3468999999999999999998765 56677664
No 217
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.36 E-value=0.0012 Score=60.39 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+|.+|+|+|++||||||.|..||..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 367889999999999999999998766
No 218
>PF13173 AAA_14: AAA domain
Probab=97.36 E-value=0.00018 Score=54.41 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=55.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC----CCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLE----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~----~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~ 138 (230)
+..++|.||.||||||+++.+++.+. +.+++.++.-..... .++ +.+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~------------------~~~--~~~~~~~~~~-- 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA------------------DPD--LLEYFLELIK-- 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh------------------hhh--hHHHHHHhhc--
Confidence 35689999999999999999998765 777777654432110 000 1122222211
Q ss_pred cccCCCeEEEeCccCCHHHHHHHhcc--CCcCEEEEEecCHHHHHHH
Q 026951 139 YYRGESGFILDGIPRTRIQAEILDQI--VDVDLVINFKSIEDQLVKR 183 (230)
Q Consensus 139 ~~~~~~~~IlDg~p~~~~qa~~l~~~--~~~d~vI~L~~~~e~l~~R 183 (230)
.+..-+++|-+-+.......+..+ ..++.-|++..+......+
T Consensus 60 --~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 60 --PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK 104 (128)
T ss_pred --cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence 124567888654333322333222 1356778888887665533
No 219
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.33 E-value=0.0019 Score=60.07 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
.+..++|.||||+|||++|+.+++.++..
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 34569999999999999999999988644
No 220
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0015 Score=61.18 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=34.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchh--HHHHHHcC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG--SLVRQELS 103 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~--dll~~~~~ 103 (230)
|--|+++||||||||.+|+.+|.+-|..+|++. +|+..+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG 587 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG 587 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence 445999999999999999999999988888874 77776643
No 221
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.31 E-value=0.0002 Score=65.02 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~ 95 (230)
...++|.||||+|||++|+.|++.++++++.++
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 346999999999999999999999998877654
No 222
>PRK06921 hypothetical protein; Provisional
Probab=97.31 E-value=0.0003 Score=60.22 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh----C--CCccchhHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMGSLVRQ 100 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~----~--~~~is~~dll~~ 100 (230)
.+..++|.|+||+|||+++..+++.+ | +.+++..+++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 35679999999999999999998754 2 346666665543
No 223
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.31 E-value=0.00021 Score=64.52 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQ 100 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~i--s~~dll~~ 100 (230)
.+..|+|.||||+|||++|+.+++.++.+++ +..+++..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 4556999999999999999999999987655 44455543
No 224
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.31 E-value=0.00019 Score=57.32 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+|+|+|+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999998887
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.30 E-value=0.00061 Score=60.10 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQE 101 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~dll~~~ 101 (230)
...++|.|++|+|||+++..+++.+ .+.++++.+++...
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 3669999999999999999998865 46678888877653
No 226
>PRK08116 hypothetical protein; Validated
Probab=97.29 E-value=0.00055 Score=58.68 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQ 100 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~---~--~~~is~~dll~~ 100 (230)
+.-++|.|+||+|||+++..+++.+ + +.++++.+++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 4459999999999999999998875 3 456677777654
No 227
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.27 E-value=0.00027 Score=63.91 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
...+|+|+|++||||||+++.|++.+|...+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 4568999999999999999999999988754
No 228
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.27 E-value=0.0019 Score=58.80 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++..|.|+|++||||||.+..||..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998765
No 229
>PRK14974 cell division protein FtsY; Provisional
Probab=97.27 E-value=0.00062 Score=60.20 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..|+|+|+|||||||.+..|+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999888887655
No 230
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.00029 Score=61.25 Aligned_cols=36 Identities=28% Similarity=0.229 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dl 97 (230)
.+..|+|+||.+||||-+|-.||+++|...||+|.+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 356799999999999999999999999999999864
No 231
>CHL00176 ftsH cell division protein; Validated
Probab=97.24 E-value=0.0036 Score=59.93 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
+..++|.||||+|||++|+.+|...+++++.+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 45699999999999999999999999887754
No 232
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.24 E-value=0.00034 Score=58.05 Aligned_cols=88 Identities=16% Similarity=0.194 Sum_probs=47.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH------HhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCC-------------
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK------LLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKL------------- 121 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~------~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~------------- 121 (230)
+++-.++|.|+||+|||++|.+++. ..++.++++++-.++....-...+-.+.++..+|.+
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 4788899999999999999998642 234567776433222221111222334444444321
Q ss_pred -CCHHHHHHHHHHHHHhccccCCCeEEEeCc
Q 026951 122 -VPEDVIFALLSKRLEEGYYRGESGFILDGI 151 (230)
Q Consensus 122 -v~de~~~~ll~~~l~~~~~~~~~~~IlDg~ 151 (230)
..-+.+...+...++.. ....+|||+.
T Consensus 97 ~~~~~~l~~~i~~~i~~~---~~~~vVIDsl 124 (226)
T PF06745_consen 97 PNDLEELLSKIREAIEEL---KPDRVVIDSL 124 (226)
T ss_dssp SCCHHHHHHHHHHHHHHH---TSSEEEEETH
T ss_pred ccCHHHHHHHHHHHHHhc---CCCEEEEECH
Confidence 11223344445555542 2467888864
No 233
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00023 Score=67.60 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
-++++++|.||||+|||++++.+|+.+|-.|+.+
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence 3778999999999999999999999998666544
No 234
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.22 E-value=0.00089 Score=63.37 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=30.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHh-------CCCccchhHHHHHH
Q 026951 66 WVLIGDPGVKKHVYADNLSKLL-------EVPHISMGSLVRQE 101 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~-------~~~~is~~dll~~~ 101 (230)
++|+|++|+|||+++..++... .+.|++..+++.+.
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 8999999999999999998754 35788888877654
No 235
>PHA02244 ATPase-like protein
Probab=97.22 E-value=0.00016 Score=64.36 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLV 98 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll 98 (230)
..+..|+|.||||+|||++|+.|+..++.+++.+..++
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 34556999999999999999999999999988776543
No 236
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.00023 Score=63.53 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.-.+|.||||+||||+|+.||+..+..+..+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence 3478999999999999999999998765543
No 237
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.21 E-value=0.00036 Score=62.27 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+..++|.||||+|||++++.+++.++..++.+
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 355699999999999999999999998766543
No 238
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.19 E-value=0.00035 Score=63.17 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+.-++|.||||+|||++++.++...+..++.+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 456699999999999999999999998776654
No 239
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.19 E-value=0.00034 Score=64.98 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+..++|.||||+|||++++.|+...+++++.+
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 344599999999999999999999998877654
No 240
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.19 E-value=0.003 Score=61.55 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQ 100 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~--~dll~~ 100 (230)
+.-|+|.||||+|||++|+.||+.++++++++ .+++..
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 44589999999999999999999998877765 355443
No 241
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.18 E-value=0.00031 Score=63.69 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
...|+|.||||+|||++|+.|++.++++++.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 34799999999999999999999998877643
No 242
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.18 E-value=0.00041 Score=60.09 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
.+..++|.||||+|||++|..+++.++..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34568999999999999999999998765
No 243
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.16 E-value=0.0004 Score=56.78 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
|..|+|+||+||||||.+.+||..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 5689999999999999999998766
No 244
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00067 Score=59.83 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=37.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHHHHcCCCCh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQELSPRSA 107 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~i--s~~dll~~~~~~~~~ 107 (230)
.|.=|++.||||+|||.+|+++|..-+..+| .-++|+++.+..+..
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaR 231 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGAR 231 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchH
Confidence 4555999999999999999999999987665 456899888776654
No 245
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=97.13 E-value=0.0042 Score=51.63 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC------CCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~------~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~ 137 (230)
+.|+|+|.|.|||||.|..|.+.+. ...|.-++-+. +...... |..-.+..+...+....+.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg--~~~ns~y----------~~s~~EK~lRg~L~S~v~R 69 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLG--IEKNSNY----------GDSQAEKALRGKLRSAVDR 69 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcC--CCCcccc----------cccHHHHHHHHHHHHHHHh
Confidence 5699999999999999999987662 11121111110 0000000 1111112233333333332
Q ss_pred ccccCCCeEEEeCccCCHHHHHHH---hccC-CcCEEEEEecCHHHHHHHHhcCC
Q 026951 138 GYYRGESGFILDGIPRTRIQAEIL---DQIV-DVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 138 ~~~~~~~~~IlDg~p~~~~qa~~l---~~~~-~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
.. ..+.-+|+|...+.....-.| .... .-.-||+..||++.+.+--.+|.
T Consensus 70 ~L-sk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~ 123 (281)
T KOG3062|consen 70 SL-SKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSERE 123 (281)
T ss_pred hc-ccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCC
Confidence 21 236778899655443332221 1111 23458999999999988876654
No 246
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.13 E-value=0.00043 Score=60.98 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
+..|+|+|+||+||||+++.|+..++.+++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 468999999999999999999999998774
No 247
>PLN02796 D-glycerate 3-kinase
Probab=97.13 E-value=0.00033 Score=61.88 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV 98 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll 98 (230)
++.+|.|.|++||||||+++.|...+. ...|++|+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 678999999999999999999988774 3456666543
No 248
>PF13245 AAA_19: Part of AAA domain
Probab=97.12 E-value=0.00054 Score=47.32 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=16.2
Q ss_pred CeEEEEEcCCCCChhHHH-HHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYA-DNLSK 85 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a-~~La~ 85 (230)
...++|.||||||||+.+ ..++.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344777999999999544 44443
No 249
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.11 E-value=0.0021 Score=59.10 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=28.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-----C--CCccchhHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL-----E--VPHISMGSLVRQ 100 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~-----~--~~~is~~dll~~ 100 (230)
.++|.|+||+|||+++..+++.+ + +.+++..+++.+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 48999999999999999998875 2 457777776544
No 250
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.10 E-value=0.00038 Score=51.13 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 026951 66 WVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~ 87 (230)
|.|.|+||+|||++|..|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998744
No 251
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.10 E-value=0.00042 Score=57.16 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLV 98 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~dll 98 (230)
..+..++|+|++|+||||+++.+++.. .+.+++..++.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 355679999999999999999998765 24566665554
No 252
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.09 E-value=0.00095 Score=60.88 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh----C--CCccchh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMG 95 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~----~--~~~is~~ 95 (230)
.++..++++|++||||||.|..||..+ | +..+++|
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 357899999999999999999988763 2 3456664
No 253
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.07 E-value=0.00051 Score=58.85 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
-.++++||||.||||+|..+|+++|+.
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 369999999999999999999999875
No 254
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.0036 Score=50.90 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=24.6
Q ss_pred CCcCEEEEEecCHHHHHHHHhcCCCCCC
Q 026951 165 VDVDLVINFKSIEDQLVKRNLESEAFSP 192 (230)
Q Consensus 165 ~~~d~vI~L~~~~e~l~~Rl~~R~~~~~ 192 (230)
..+|.+|+|.+++++|.+|+..|.....
T Consensus 152 v~~dgiIYLrasPetc~~Ri~~R~R~EE 179 (244)
T KOG4235|consen 152 VSLDGIIYLRASPETCYKRIYLRAREEE 179 (244)
T ss_pred cccceEEEeecChHHHHHHHHHHhhhhh
Confidence 3689999999999999999999987553
No 255
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.07 E-value=0.00045 Score=64.07 Aligned_cols=90 Identities=11% Similarity=0.076 Sum_probs=51.9
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCC----------C
Q 026951 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV----------P 123 (230)
Q Consensus 59 ~~~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v----------~ 123 (230)
...++-.++|.|+||+||||++.+++... .+.|++..+-..+....-..+|-.+.+++.+|.+. +
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 34477899999999999999999987643 35677765433333322222333344444444221 1
Q ss_pred HHHHHHHHHHHHHhccccCCCeEEEeCcc
Q 026951 124 EDVIFALLSKRLEEGYYRGESGFILDGIP 152 (230)
Q Consensus 124 de~~~~ll~~~l~~~~~~~~~~~IlDg~p 152 (230)
++.+.. +...+++ ....-+|||+..
T Consensus 339 ~~~~~~-i~~~i~~---~~~~~vvIDsi~ 363 (484)
T TIGR02655 339 EDHLQI-IKSEIAD---FKPARIAIDSLS 363 (484)
T ss_pred HHHHHH-HHHHHHH---cCCCEEEEcCHH
Confidence 333333 3344544 234678899753
No 256
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.06 E-value=0.0006 Score=56.57 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchhHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMGSLV 98 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~dll 98 (230)
....++|+|++|+|||+++..+++.. .+.+++..++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 34568999999999999999998865 56677766544
No 257
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.05 E-value=0.0018 Score=56.64 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQE 101 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~---~--~~~is~~dll~~~ 101 (230)
.+..++|.|++|+|||+++..|+..+ | +.++.+.+++.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 34569999999999999999998876 3 4566777777653
No 258
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.05 E-value=0.00036 Score=58.80 Aligned_cols=21 Identities=38% Similarity=0.639 Sum_probs=18.4
Q ss_pred EEcCCCCChhHHHHHHHHHhC
Q 026951 68 LIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 68 l~G~pGsGKsT~a~~La~~~~ 88 (230)
|+||+||||||+|+.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999988774
No 259
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.04 E-value=0.00029 Score=53.57 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
++|.|+||+||||+++.||+.+|..+.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 789999999999999999999987654
No 260
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.04 E-value=0.0013 Score=54.62 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=57.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-------CCCccchhHHHHHHcC--CCChHHHHHHHHHHCCCCCC------------
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL-------EVPHISMGSLVRQELS--PRSALYKQIANAVNEGKLVP------------ 123 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~-------~~~~is~~dll~~~~~--~~~~~~~~i~~~l~~g~~v~------------ 123 (230)
.++|.|++|+|||++...++..+ .+.|++..++...... ...........+-....++-
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~ 115 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRT 115 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHH
Confidence 37999999999999999997653 2557887776654322 11111122222111111111
Q ss_pred HHHHHHHHHHHHHhccccCCCeEEEe--CccCCHHH-HHHHhccCCcCEEEEEecCHHHHHHHHhcC
Q 026951 124 EDVIFALLSKRLEEGYYRGESGFILD--GIPRTRIQ-AEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (230)
Q Consensus 124 de~~~~ll~~~l~~~~~~~~~~~IlD--g~p~~~~q-a~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (230)
.+.+..++...... ++.+|+. ..|..... ...+.....--+++-|..|++....++..+
T Consensus 116 q~~lf~l~n~~~~~-----~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 116 QEELFHLFNRLIES-----GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp HHHHHHHHHHHHHT-----TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-----CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 12344444443333 4556653 45554321 222322223346888888887666665544
No 261
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.04 E-value=0.0012 Score=55.49 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH-h----CCCccchh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL-L----EVPHISMG 95 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~-~----~~~~is~~ 95 (230)
.++-.++|.|+||+|||++|..++.. . .+.+++++
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 48889999999999999999886442 1 35566654
No 262
>PRK05973 replicative DNA helicase; Provisional
Probab=97.04 E-value=0.00083 Score=56.52 Aligned_cols=58 Identities=14% Similarity=0.034 Sum_probs=35.8
Q ss_pred ccccccccCCCccccccccCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchh
Q 026951 37 DEECDLHGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG 95 (230)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivl~G~pGsGKsT~a~~La~~~---~--~~~is~~ 95 (230)
..+|++....+.+.-.....|.+ .++-.++|.|+||+|||++|-.++..- | +.|++..
T Consensus 39 ~~w~~~~~~~~~~~p~~~l~GGl-~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 39 SSWSLLAAKAAATTPAEELFSQL-KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred chHHHHHHhccCCCCHHHhcCCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 35555543323222222333444 488889999999999999999886533 3 4566653
No 263
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.03 E-value=0.00062 Score=62.23 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+..++|.||||+|||++++.++..++..++.+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 455689999999999999999999988766543
No 264
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0037 Score=59.62 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchh--HHHHHHcC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG--SLVRQELS 103 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~--dll~~~~~ 103 (230)
+.-|++.||||+|||.+|..++...++.+||+. +|+.+.+.
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 345999999999999999999999999999985 77777664
No 265
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.03 E-value=0.0024 Score=58.61 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=30.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh-------CCCccchhHHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL-------EVPHISMGSLVRQE 101 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~-------~~~~is~~dll~~~ 101 (230)
.++|.|+||+|||+++..++..+ .+.|++..+++.+.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 49999999999999999998764 35677887776654
No 266
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.02 E-value=0.0012 Score=55.83 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.+..++|.|++|+||||+++.+++.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 344689999999999999999998875
No 267
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.00057 Score=59.45 Aligned_cols=32 Identities=34% Similarity=0.526 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~ 95 (230)
-+|+++||.|||||.+|+-||+.+++|+--+|
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD 129 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIAD 129 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence 47999999999999999999999999976544
No 268
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.02 E-value=0.0015 Score=55.18 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---C--CCccchhHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMGSLVRQ 100 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~---~--~~~is~~dll~~ 100 (230)
..++|.|+||+|||+++..++..+ | +.++++.+++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 368999999999999999999876 2 456677777754
No 269
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.02 E-value=0.00062 Score=59.89 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~ 91 (230)
.+..++|.||||+||||+|+.+++.++..+
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 345689999999999999999999998754
No 270
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.01 E-value=0.0038 Score=56.52 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh-------CCCccchhHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL-------EVPHISMGSLVRQ 100 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~-------~~~~is~~dll~~ 100 (230)
..++|.|++|+|||+++..++..+ .+.+++..+++.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 348999999999999999998754 2457787776654
No 271
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.01 E-value=0.00046 Score=58.57 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=35.8
Q ss_pred cCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHHHc
Q 026951 55 SAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQEL 102 (230)
Q Consensus 55 ~~~~~~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~--~dll~~~~ 102 (230)
-++.| .|.+|++.||||.|||..|+.||.+.+++++.+ .+|+-+..
T Consensus 145 ~Fg~W--APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 145 RFGDW--APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred Hhccc--CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 35666 356799999999999999999999999887755 35555443
No 272
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.01 E-value=0.00086 Score=50.72 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
..+..|+|.|+-||||||+++.+++.+|+.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 356789999999999999999999999874
No 273
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00046 Score=65.59 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGS 96 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~--~is~~d 96 (230)
.++++++|.||||+|||++++.+|+.+|-. .+|++-
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG 473 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGG 473 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccc
Confidence 478999999999999999999999999854 455553
No 274
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.01 E-value=0.0011 Score=55.30 Aligned_cols=36 Identities=19% Similarity=0.103 Sum_probs=27.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~ 95 (230)
.+++-.++|.|+||+|||++|..++... .+.+++++
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 4478889999999999999999985432 35566654
No 275
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0065 Score=57.33 Aligned_cols=122 Identities=18% Similarity=0.167 Sum_probs=73.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHHHcCCCChHHHHHHHHHHC-----------------CC--
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELSPRSALYKQIANAVNE-----------------GK-- 120 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~--~dll~~~~~~~~~~~~~i~~~l~~-----------------g~-- 120 (230)
-|.-+++.||||+|||.+|++++-+-++|++++ ++.++.....+.+ .+++++.+ |.
T Consensus 182 iPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAs---RVRdLF~qAkk~aP~IIFIDEiDAvGr~R 258 (596)
T COG0465 182 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAS---RVRDLFEQAKKNAPCIIFIDEIDAVGRQR 258 (596)
T ss_pred cccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcH---HHHHHHHHhhccCCCeEEEehhhhccccc
Confidence 345589999999999999999999999886654 4666655443322 11111111 10
Q ss_pred ----CCCHHHHHHHHHHHHHhccccC-CCe-EEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhc
Q 026951 121 ----LVPEDVIFALLSKRLEEGYYRG-ESG-FILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLE 186 (230)
Q Consensus 121 ----~v~de~~~~ll~~~l~~~~~~~-~~~-~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~ 186 (230)
-.-.+...+.+.+.+-+.+-.. +.+ +|+.+.+|.-.....|-..+.+|.-|.++.|+-...+.+.+
T Consensus 259 g~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~Ilk 330 (596)
T COG0465 259 GAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILK 330 (596)
T ss_pred CCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHH
Confidence 0112334444444444332111 234 56678888766656666667899999999999444444443
No 276
>PRK04328 hypothetical protein; Provisional
Probab=97.00 E-value=0.0012 Score=55.87 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH-h----CCCccchh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL-L----EVPHISMG 95 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~-~----~~~~is~~ 95 (230)
.++-.++|.|+||+|||++|..++.. . .+.+++++
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 47888999999999999999987543 1 24566653
No 277
>PRK04195 replication factor C large subunit; Provisional
Probab=96.99 E-value=0.00066 Score=62.92 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
+..++|.||||+||||++..|++.+++.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 56799999999999999999999998776644
No 278
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.98 E-value=0.00065 Score=61.71 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
+...++|.||||+||||+|+.|++..+..++.+
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 344688999999999999999999888766544
No 279
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00072 Score=59.31 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.|++|+++||.|+|||-+|++||+--|.|+|-+
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 678899999999999999999999999998764
No 280
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.96 E-value=0.00042 Score=57.80 Aligned_cols=22 Identities=41% Similarity=0.771 Sum_probs=19.1
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 026951 66 WVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~ 87 (230)
-+++|||||||||+|.-+.+-+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHH
Confidence 5789999999999998877655
No 281
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.94 E-value=0.00064 Score=57.05 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGS 96 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~d 96 (230)
+..++|+||||+||||++..++.... +.++++++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 34799999999999999999987653 56777765
No 282
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.94 E-value=0.00067 Score=70.63 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVR 99 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~--~dll~ 99 (230)
+.-|+|+||||+|||.+|+.||...++|+|++ .+++.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 33499999999999999999999999987754 56664
No 283
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.94 E-value=0.0007 Score=54.16 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEV 89 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~ 89 (230)
..++++||+|+|||.+|+.|++.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999998885
No 284
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.93 E-value=0.00086 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+|+|+|++||||||+.+.|+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999997643
No 285
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.93 E-value=0.0011 Score=55.40 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.++-.++|.|+||+||||+|.+++-
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999866543
No 286
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.007 Score=58.23 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=48.5
Q ss_pred ccCCCccccccccCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh--HHHHHHcC
Q 026951 43 HGQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG--SLVRQELS 103 (230)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~--dll~~~~~ 103 (230)
.++..-|..+.+-+++...+.--|++.||||+|||-+|+++|.++.+.++|+. +|+.....
T Consensus 685 ldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVG 747 (953)
T KOG0736|consen 685 LDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVG 747 (953)
T ss_pred HHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhc
Confidence 34556677777777776555566999999999999999999999999999885 77766543
No 287
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.92 E-value=0.00089 Score=56.76 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++..+|.|+||||+||||+...|.+.|
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 467899999999999999999998765
No 288
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.92 E-value=0.00082 Score=62.75 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
..+++|+|||||||||..+.||+++|+.+.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 457899999999999999999999987544
No 289
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.90 E-value=0.00095 Score=58.08 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dl 97 (230)
+..|+|+||.|||||.+|-.||++ +...||+|.+
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 457999999999999999999999 4588888753
No 290
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.88 E-value=0.00086 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+|.|+|+.||||||+++.|..
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 5799999999999999999955
No 291
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0017 Score=56.20 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=32.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCc--cchhHHHHHHcCC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGSLVRQELSP 104 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~--is~~dll~~~~~~ 104 (230)
-|+|+||||.|||.+|+.+|.+-+-.+ ||.+||+-+.+..
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGE 209 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 209 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhcc
Confidence 489999999999999999999887544 4556888876653
No 292
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.86 E-value=0.0011 Score=57.98 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGSLV 98 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~-------~~~is~~dll 98 (230)
..++|.||||+||||+|..+++.+. +.+++..++.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 3589999999999999999998773 2355555543
No 293
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.85 E-value=0.00071 Score=61.25 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLV 98 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll 98 (230)
.++.+|.|.|++||||||+++.|...+. +..|++|+..
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 3678999999999999999999976652 4456666654
No 294
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00079 Score=59.43 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~ 95 (230)
.+..|+++||||+|||-+|+++|++-|..+|+++
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 5567999999999999999999999998877653
No 295
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.84 E-value=0.0011 Score=52.58 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh---C--CCccchh
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG 95 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~---~--~~~is~~ 95 (230)
.+++.|+||+||||++..++..+ | +.+++.|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 47899999999999999998765 3 3445554
No 296
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.83 E-value=0.001 Score=54.91 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La 84 (230)
.++-.++|+||+||||||+.+.|-
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 477889999999999999999884
No 297
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.81 E-value=0.016 Score=45.76 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=70.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC--CCccchhHHHHHHcCCC-ChHHHH--HHH-HHHCCC-CC---CHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQELSPR-SALYKQ--IAN-AVNEGK-LV---PEDVIFAL 130 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~--~~~is~~dll~~~~~~~-~~~~~~--i~~-~l~~g~-~v---~de~~~~l 130 (230)
.++.+|++-|.|.+|||++|..|...+. +-||-+| ++++.+.+. -.++.. -.. ....|. ++ +.-+....
T Consensus 21 ~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD-~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~ 99 (205)
T COG3896 21 PEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGID-LFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELA 99 (205)
T ss_pred CCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHH-HHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHH
Confidence 4778899999999999999999987764 4566664 444443321 000000 000 000111 11 11122211
Q ss_pred HH---HHHHhccccCCCeEEEeCccCCHHHHHH-HhccCC-cCEEEEEecCHHHHHHHHhcCC
Q 026951 131 LS---KRLEEGYYRGESGFILDGIPRTRIQAEI-LDQIVD-VDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 131 l~---~~l~~~~~~~~~~~IlDg~p~~~~qa~~-l~~~~~-~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+. ..+.. +...+.++|.|.+-.+...... +.-+.. +...|-+.||.|++.+|-..|.
T Consensus 100 ~~~~r~ai~a-~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~ 161 (205)
T COG3896 100 MHSRRRAIRA-YADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRG 161 (205)
T ss_pred HHHHHHHHHH-HhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcC
Confidence 11 11211 2234778999987666554333 333333 4468999999999999887654
No 298
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.80 E-value=0.0019 Score=48.99 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=26.8
Q ss_pred CCCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 58 ~~~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..|.+|+.+.+-|+||+||+.+++.||+.+
T Consensus 48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 356799999999999999999999999863
No 299
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.80 E-value=0.0014 Score=56.35 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..|+|+|++|+||||.+..||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356789999999999999999998766
No 300
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.80 E-value=0.0013 Score=58.03 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+++.+|.|+|+|||||||++..|...+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 477899999999999999999987655
No 301
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00097 Score=61.87 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~ 95 (230)
.+..++|.||||+|||++|+.++..++.++++++
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~ 308 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK 308 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee
Confidence 4457999999999999999999998887777654
No 302
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.0049 Score=48.24 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..|-++|.+||||||+|-.|.+.+
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L 55 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQAL 55 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHH
Confidence 477889999999999999999998866
No 303
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.79 E-value=0.001 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 026951 66 WVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++|+|+||+||||++..++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999997765
No 304
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.76 E-value=0.0054 Score=52.49 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=33.4
Q ss_pred CCCCCCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHHH
Q 026951 57 GSPPRRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQE 101 (230)
Q Consensus 57 ~~~~~~~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~~~ 101 (230)
+..+.+++.|+++|.-||||||++++|-.++. ...|+.|--+++.
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v 62 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV 62 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence 34567899999999999999999999966552 3345666555543
No 305
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.0023 Score=57.85 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..+|.+|.+.|.-||||||.|..||..|
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~l 124 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYL 124 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHH
Confidence 3467899999999999999999999876
No 306
>PHA03135 thymidine kinase; Provisional
Probab=96.76 E-value=0.046 Score=48.21 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+-.+|.|-|+.|+||||.++.|++.
T Consensus 8 ~~~~rIYlDG~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 8 AQLIRVYLDGPFGIGKTSMLNEMPDH 33 (343)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 36678999999999999999999875
No 307
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.76 E-value=0.0092 Score=57.83 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+..++|+|++|+||||++..|++.+++.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4557899999999999999999999874
No 308
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.76 E-value=0.0017 Score=56.05 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..++.+|+|+||+||||||.+..|+..+
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467789999999999999999997654
No 309
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.0014 Score=60.57 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+..++|.||||+||||+|+.+++.+++.
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3458999999999999999999998763
No 310
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=96.74 E-value=0.039 Score=46.26 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.++.|+|.|..||||+...+.|.+.++-.++.+
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v 62 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARV 62 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEE
Confidence 689999999999999999999999886544433
No 311
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.74 E-value=0.0011 Score=60.02 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
-|++.|+||+||||+|+.||+.|
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHH
Confidence 49999999999999999999877
No 312
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.74 E-value=0.0012 Score=58.74 Aligned_cols=33 Identities=33% Similarity=0.537 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC--CCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~--~~~is~ 94 (230)
.+..|+|.||||+|||.+|-.+|+.+| +|++.+
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 467799999999999999999999997 666654
No 313
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.74 E-value=0.0016 Score=57.29 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..|.|+||+||||||.+..||..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357889999999999999999998766
No 314
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.73 E-value=0.0014 Score=52.37 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=23.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC--CCccch
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLE--VPHISM 94 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~--~~~is~ 94 (230)
++|+|++|||||++|..++...+ +.|+++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 78999999999999999988755 344443
No 315
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.73 E-value=0.0013 Score=61.82 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+..+++|+||||+||||+++.|++.+
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHH
Confidence 66789999999999999999999876
No 316
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.73 E-value=0.0012 Score=64.56 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
++..++|.||||+|||++|+.|++.++.+++.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVR 377 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence 45579999999999999999999999876653
No 317
>PHA03134 thymidine kinase; Provisional
Probab=96.72 E-value=0.19 Score=44.35 Aligned_cols=127 Identities=16% Similarity=0.095 Sum_probs=66.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH--hC--CCccchhHHHHHHcCCCChHHHHHHH---HHHCCCCCCHH---------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL--LE--VPHISMGSLVRQELSPRSALYKQIAN---AVNEGKLVPED--------- 125 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~--~~--~~~is~~dll~~~~~~~~~~~~~i~~---~l~~g~~v~de--------- 125 (230)
+-.+|.|-|+.|+||||.++.|... .+ +.++.--.-.|+..... ..-+.|.+ -..+|+.-..+
T Consensus 12 ~~~rvYlDG~~GvGKTT~~~~l~~~~~~~~~vl~~pEPM~YWr~~f~~-d~i~~Iy~~q~r~~~G~~s~~~aa~~~a~~Q 90 (340)
T PHA03134 12 RIVRIYLDGAYGIGKSTTGRVMASAASGGGPTLYFPEPMAYWRTLFET-DVVSGIYDAQNRKQQGSLAAEDAAGITAHYQ 90 (340)
T ss_pred cEEEEEEeCCCcCCHHHHHHHHHHhccCCCceEEecCcHHHHHHHhhh-hHHHHHHHHHhHHhccCcchhHHHHHHHHHH
Confidence 5678999999999999999988763 23 33333323333333211 11122221 23444432221
Q ss_pred --------HHHHHHHHHHHh--cc--ccCCCeEEEeCccCC----------------HHHHHHH-hcc--CCc-CEEEEE
Q 026951 126 --------VIFALLSKRLEE--GY--YRGESGFILDGIPRT----------------RIQAEIL-DQI--VDV-DLVINF 173 (230)
Q Consensus 126 --------~~~~ll~~~l~~--~~--~~~~~~~IlDg~p~~----------------~~qa~~l-~~~--~~~-d~vI~L 173 (230)
+....+...+.. .. -.....+|+|..|.+ ......+ ..+ ..+ +-+|++
T Consensus 91 ~~fatP~~~~~~~~~~~~~~~~~~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~ls~~~~~~l~~~~p~~~pG~niVl~ 170 (340)
T PHA03134 91 ARFATPYLILHDRLSTLFGPPSLARGGRPDVTLVFDRHPVASCVCFPLARYLLGDMSACALLALAATLPREPPGGNLVVT 170 (340)
T ss_pred HHhcChHHHHHHHHHHhcCCCCCCCCCCCCeeeeeccCCCCccccchHHHHhcCCCCHHHHHHHHHhCCCCCCCCeEEEE
Confidence 111112222221 00 011245788987754 1111111 111 124 789999
Q ss_pred ecCHHHHHHHHhcCCC
Q 026951 174 KSIEDQLVKRNLESEA 189 (230)
Q Consensus 174 ~~~~e~l~~Rl~~R~~ 189 (230)
+.++++..+|+.+|..
T Consensus 171 ~l~~~e~~~Rl~~R~R 186 (340)
T PHA03134 171 TLNPDEHLRRLRARAR 186 (340)
T ss_pred eCCHHHHHHHHHHcCC
Confidence 9999999999999986
No 318
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.0017 Score=58.08 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+..++|.||||+||||+|+.+++.+++.
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 3458999999999999999999998753
No 319
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.71 E-value=0.0017 Score=50.68 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+++|+|.||+||||+...|+.
T Consensus 7 nR~~~fIltGgpGaGKTtLL~aLa~ 31 (183)
T COG3911 7 NRHKRFILTGGPGAGKTTLLAALAR 31 (183)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHH
Confidence 3567899999999999999999975
No 320
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.0016 Score=58.31 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=25.0
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 59 ~~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+..++..++|+||+||||||.+.+|+..+
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45677899999999999999999998753
No 321
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.71 E-value=0.0017 Score=53.10 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
|..|.|+|++||||||+.+.+...+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4679999999999999999998765
No 322
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.70 E-value=0.0014 Score=52.02 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=17.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..+..++|.|++|+|||++.+.+.+.+
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999886654
No 323
>PLN03025 replication factor C subunit; Provisional
Probab=96.70 E-value=0.0016 Score=57.05 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.+.++|.||||+||||++..+++.+.
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999873
No 324
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.70 E-value=0.0016 Score=53.22 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.|+|+||+||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 489999999999999998877664
No 325
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.69 E-value=0.0017 Score=51.99 Aligned_cols=27 Identities=15% Similarity=-0.029 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
++..+.|+|++||||||+.+.|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 566899999999999999999987664
No 326
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.69 E-value=0.0018 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLS 84 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La 84 (230)
.+..++|.|++||||||+++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 56789999999999999999986
No 327
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0011 Score=59.94 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=26.2
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+|.||||+||||+..++|..+++-+++.
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 79999999999999999999998876654
No 328
>PHA03133 thymidine kinase; Provisional
Probab=96.67 E-value=0.051 Score=48.23 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
+-.+|.|-|+.|+||||.++.+.+.++
T Consensus 39 ~~~rvYlDG~~GvGKTTt~~~l~~a~~ 65 (368)
T PHA03133 39 ALLRIYVDGPHGLGKTTTAAALAAALG 65 (368)
T ss_pred eEEEEEEeCCCcCCHHHHHHHHHHhhC
Confidence 567899999999999999988888765
No 329
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.66 E-value=0.0016 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
..+|+++|++||||||++..|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998653
No 330
>PRK13695 putative NTPase; Provisional
Probab=96.66 E-value=0.0018 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++|+|+|++|+||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999987654
No 331
>PTZ00202 tuzin; Provisional
Probab=96.66 E-value=0.021 Score=52.30 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
.+.+++|+|++|+||||+++.+...++.+
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~~~ 313 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMP 313 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCCce
Confidence 34589999999999999999998877743
No 332
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.0016 Score=60.58 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=39.4
Q ss_pred hhccchhhhhcccCCccccccc-cCCCccccccccCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 22 RAYGSAAAAQLQYDYDEECDLH-GQASEPMLRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 22 r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..|+.++++++.-...-+++.. ...-.|++-..+... +.|.++.++||||+||||+.+.|.+.+
T Consensus 29 KafavAa~G~mar~~~rtadi~ekklhVPmvdrtp~d~--PPPfIvavvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 29 KAFAVAAIGQMARQAMRTADIEEKKLHVPMVDRTPKDL--PPPFIVAVVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred hhhhhhchHHHHHHHhhccchhhhccccccccCCcccC--CCCeEEEeecCCCCChhHHHHHHHHHH
Confidence 5567777776433333333332 233355553333322 356677799999999999999997766
No 333
>PRK13768 GTPase; Provisional
Probab=96.65 E-value=0.0019 Score=54.91 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+..+++.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 5679999999999999999998765
No 334
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.048 Score=45.44 Aligned_cols=31 Identities=29% Similarity=0.232 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC-Cccch
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEV-PHISM 94 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~-~~is~ 94 (230)
.-|+|.||.|+||+|+.++|.++++- ..+++
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsv 69 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSV 69 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCCcceEEe
Confidence 46999999999999999999999973 43433
No 335
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.63 E-value=0.0018 Score=55.84 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++..+|.|+|+||+||||+...|...|
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 578899999999999999999998876
No 336
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.62 E-value=0.0028 Score=51.82 Aligned_cols=37 Identities=24% Similarity=0.174 Sum_probs=29.1
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 026951 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (230)
Q Consensus 59 ~~~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~ 95 (230)
...++..+.|.|+||||||++|..++... .+.+|++.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34588899999999999999999987543 35666664
No 337
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.62 E-value=0.0017 Score=63.26 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+..|+|.||||+||||+++.|++.++.+++.+
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 455699999999999999999999998766543
No 338
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0043 Score=53.93 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=34.8
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHHHHc
Q 026951 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQEL 102 (230)
Q Consensus 59 ~~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~i--s~~dll~~~~ 102 (230)
....|+.++|.||||.|||.+|+.+++.+|+.++ +.+.++...+
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 3445677899999999999999999999987654 5566666544
No 339
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.61 E-value=0.0019 Score=47.61 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~ 85 (230)
+|+|+|+||+||||+...|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999975
No 340
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.60 E-value=0.0017 Score=53.41 Aligned_cols=25 Identities=44% Similarity=0.711 Sum_probs=19.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+..++|+|+||+|||++|+.|..-+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 3579999999999999999997654
No 341
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.60 E-value=0.0019 Score=62.86 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=27.1
Q ss_pred CCe-EEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 62 RGV-QWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 62 ~~~-~ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
+|. .++|+||||+|||++|+.||+.++.+++.
T Consensus 486 kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~ 518 (758)
T PRK11034 486 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHHHhCCCcEE
Confidence 443 58999999999999999999999876553
No 342
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.58 E-value=0.0039 Score=57.89 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=27.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHH----Hh--CCCccchh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSK----LL--EVPHISMG 95 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~----~~--~~~~is~~ 95 (230)
..++..++|.|+||+||||+|..++- .. ++.||+..
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 34888999999999999999999732 22 35566654
No 343
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.58 E-value=0.0022 Score=59.79 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~ 91 (230)
+..++|+||||+||||+|+.|++.+++..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 45799999999999999999999998753
No 344
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.58 E-value=0.003 Score=52.01 Aligned_cols=36 Identities=28% Similarity=0.260 Sum_probs=28.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~ 95 (230)
..++..+.|.|+|||||||+|..++... .+.+++.+
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3578899999999999999999998654 34466553
No 345
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.56 E-value=0.0023 Score=51.68 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|+|++||||||+.+.|...+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 56789999999999999999998765
No 346
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.0022 Score=59.10 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+..++|.||||+||||+|+.|++.+++.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 3458999999999999999999999874
No 347
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.55 E-value=0.0022 Score=50.31 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|++||||||+...|...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 5678999999999999999999753
No 348
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=96.54 E-value=0.022 Score=45.64 Aligned_cols=114 Identities=7% Similarity=0.104 Sum_probs=70.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCC---CccchhHHHHHHcCCCChHHHHHHHHHHCCC-----------------CCCH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEV---PHISMGSLVRQELSPRSALYKQIANAVNEGK-----------------LVPE 124 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~---~~is~~dll~~~~~~~~~~~~~i~~~l~~g~-----------------~v~d 124 (230)
+|+|+|..+|||-|++..|.+.++. ..++.++-++..++.. ++.....++..+. .-..
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~--~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp 78 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQE--HGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 78 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHH--hChhHHHhcCCcccchhhhHHHHHHHHHHHhhCc
Confidence 4899999999999999999988874 2567766666554421 1122222222111 1111
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccC-CcCEEEEEecCHHHHHHHHhcC
Q 026951 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLES 187 (230)
Q Consensus 125 e~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R 187 (230)
+.+.+.+.. . .....|||++. |...+...|.+.. .--+.|.+.+++++..+|....
T Consensus 79 ~~F~r~~~~---~---~~~~v~iIsD~-Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rgw~F 135 (182)
T TIGR01223 79 GFFCRKIVE---G---ISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVF 135 (182)
T ss_pred cHHHHHHHh---c---cCCCEEEEeCC-CcccHHHHHHHHcCCceEEEEEecCHHHHHHHHHhc
Confidence 333333322 1 12346777765 6677777776543 3346899999999999998554
No 349
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.54 E-value=0.0049 Score=51.50 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
.....+.+.|+||+||||.|..+.+.|...
T Consensus 117 n~~~l~glag~pGtgkst~~a~v~~aWp~~ 146 (323)
T KOG2702|consen 117 NNEELTGLAGRPGTGKSTRIAAVDNAWPVN 146 (323)
T ss_pred cchheeeeecCCCCcchhHHHHHHhhcchh
Confidence 355679999999999999999999877544
No 350
>COG4240 Predicted kinase [General function prediction only]
Probab=96.54 E-value=0.0021 Score=53.62 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh------CCCccchhHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL------EVPHISMGSLVR 99 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~------~~~~is~~dll~ 99 (230)
++|.++.|+||-||||||++..|-..+ ....+|.||+.-
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYl 92 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYL 92 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhc
Confidence 578999999999999999999874433 345678888653
No 351
>PRK10646 ADP-binding protein; Provisional
Probab=96.54 E-value=0.0033 Score=49.32 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
..+..|+|.|.-|+||||+++.|++.+|+.
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 346689999999999999999999999873
No 352
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.53 E-value=0.0021 Score=56.54 Aligned_cols=32 Identities=34% Similarity=0.577 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
.+..++|.|+||+|||++++.+|+.++.+++.
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 34459999999999999999999999866443
No 353
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.53 E-value=0.0024 Score=61.01 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=33.7
Q ss_pred cccccCCCCCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 51 LRLDSAGSPPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 51 ~~~~~~~~~~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
..+......++..++.+|+||||.||||+|.-+|+.-|+.++.+
T Consensus 314 ~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 314 LDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred hhcccCccCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 33334344444566899999999999999999999999877754
No 354
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0018 Score=57.83 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=26.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
-+++.||||+|||.+|+.+|.+-|..++++
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 389999999999999999999998766654
No 355
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.52 E-value=0.0027 Score=61.62 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~ 95 (230)
+...++|.||||+||||+|+.+++..+..++.++
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 3446899999999999999999998877665543
No 356
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.50 E-value=0.0027 Score=49.08 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++|.|+|+.+|||||+++.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999997755
No 357
>PRK04296 thymidine kinase; Provisional
Probab=96.50 E-value=0.0026 Score=51.55 Aligned_cols=25 Identities=8% Similarity=-0.171 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+..++++|+||+||||.+..++..+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999987765
No 358
>PHA02624 large T antigen; Provisional
Probab=96.50 E-value=0.0027 Score=59.84 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
++...|+|.||||+||||+|..|.+.+|-..+++
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 4667899999999999999999999996555555
No 359
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.49 E-value=0.0022 Score=62.84 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
++..++|+||||+||||+++.+++.++.+++.+
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i 380 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM 380 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 566799999999999999999999998776543
No 360
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.49 E-value=0.0029 Score=56.64 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=26.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
..+|..|.|+|++||||||++..|.+.+.
T Consensus 2 ~~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 2 LFHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 35889999999999999999999988775
No 361
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.49 E-value=0.0021 Score=48.63 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++-.++|+|++||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 56789999999999999999997654
No 362
>PRK05642 DNA replication initiation factor; Validated
Probab=96.48 E-value=0.0025 Score=53.45 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH-----hCCCccchhHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKL-----LEVPHISMGSLVR 99 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~-----~~~~~is~~dll~ 99 (230)
..++|.|++|+|||+++..++.. ..+.|++.++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 45899999999999999998753 3567888888775
No 363
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.48 E-value=0.003 Score=54.97 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..|.|+|+|||||||++..|+..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999987754
No 364
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.46 E-value=0.0028 Score=50.67 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.|.|+||+||||||+-+.+|..
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 46778999999999999999999864
No 365
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.45 E-value=0.0024 Score=58.34 Aligned_cols=27 Identities=37% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.+..|++.|+||+|||++|+.|+..++
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 456799999999999999999998874
No 366
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.44 E-value=0.0037 Score=41.40 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+...+|+|+.||||||+-..+.-
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344699999999999999998753
No 367
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.44 E-value=0.0023 Score=56.60 Aligned_cols=33 Identities=27% Similarity=0.559 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC--CCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~--~~~is~ 94 (230)
.+.-|++.||||+|||.+|-.+|+.+| +|++++
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~i 98 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAI 98 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceee
Confidence 456799999999999999999999997 566544
No 368
>PRK10867 signal recognition particle protein; Provisional
Probab=96.44 E-value=0.0031 Score=57.59 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh----C--CCccchh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMG 95 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~----~--~~~is~~ 95 (230)
.++..|+++|++||||||.+..||..+ | +..+++|
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 357889999999999999888887644 3 3455554
No 369
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.43 E-value=0.0029 Score=55.09 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~ 91 (230)
+..+++.|+||+||||++..+++.++..+
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 45566689999999999999999876543
No 370
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.0028 Score=59.10 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~ 89 (230)
.+..|+|+||||+||||+|..|++.+.+
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3456899999999999999999998865
No 371
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.42 E-value=0.0026 Score=61.93 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=29.3
Q ss_pred CCCe-EEEEEcCCCCChhHHHHHHHHHhCCCc--cchhHHH
Q 026951 61 RRGV-QWVLIGDPGVKKHVYADNLSKLLEVPH--ISMGSLV 98 (230)
Q Consensus 61 ~~~~-~ivl~G~pGsGKsT~a~~La~~~~~~~--is~~dll 98 (230)
.+|. .++|+||||+|||++|+.||+.++..+ ++++++.
T Consensus 481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~ 521 (731)
T TIGR02639 481 NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM 521 (731)
T ss_pred CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence 3454 589999999999999999999997654 4444443
No 372
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.42 E-value=0.0034 Score=53.22 Aligned_cols=30 Identities=10% Similarity=0.254 Sum_probs=26.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~~ 89 (230)
..++-+++|+|++|+||||+++.+.+....
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 358889999999999999999999876643
No 373
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.41 E-value=0.0028 Score=58.70 Aligned_cols=31 Identities=29% Similarity=0.237 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
+..+.+|+||+||||||..+-|++.+|+.++
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 3457899999999999999999999998655
No 374
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.40 E-value=0.0031 Score=51.69 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+..+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999998654
No 375
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.40 E-value=0.0042 Score=57.94 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=27.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~ 95 (230)
..++-.++|.|+||+|||+++..++... .+.++++.
T Consensus 270 ~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e 310 (509)
T PRK09302 270 FFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE 310 (509)
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 3467789999999999999999886432 45666654
No 376
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.39 E-value=0.0032 Score=50.75 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997543
No 377
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.39 E-value=0.003 Score=50.36 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=23.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 026951 66 WVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~ 95 (230)
++|.|+||+|||+++..++... .+.+++++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 7899999999999999885532 35567664
No 378
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.38 E-value=0.0038 Score=49.31 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..+.|+|++||||||++..|.+.+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998876
No 379
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.0033 Score=58.28 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+.-++|.||+|+||||+|+.+|+.+++.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 3469999999999999999999988764
No 380
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.38 E-value=0.0032 Score=51.75 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 467789999999999999999998654
No 381
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.37 E-value=0.0033 Score=52.42 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.++-.+.|+||+||||||+-..|+-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4778899999999999999998853
No 382
>PHA03138 thymidine kinase; Provisional
Probab=96.36 E-value=0.029 Score=49.46 Aligned_cols=27 Identities=19% Similarity=0.087 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+-.+|.|-|+.|+||||.++.+.+.+
T Consensus 10 ~~~~riYleG~~GvGKTT~~~~~l~~~ 36 (340)
T PHA03138 10 MCILRIYLDGAFGIGKTTAAEAFLHGF 36 (340)
T ss_pred ccEEEEEEECCCCcCHHhHHHHHHHhh
Confidence 356789999999999999998776654
No 383
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.35 E-value=0.12 Score=43.59 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=29.1
Q ss_pred CeEEEEEcCC-CCChhHHHHHHHHHh---C--CCccch--hHHHHHHcC
Q 026951 63 GVQWVLIGDP-GVKKHVYADNLSKLL---E--VPHISM--GSLVRQELS 103 (230)
Q Consensus 63 ~~~ivl~G~p-GsGKsT~a~~La~~~---~--~~~is~--~dll~~~~~ 103 (230)
+++|+|.|+- |+||||++..|+..+ | +..|++ .++++-.+.
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg 49 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFG 49 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcC
Confidence 3578999988 899999999998765 4 334443 366665543
No 384
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=96.35 E-value=0.072 Score=49.47 Aligned_cols=32 Identities=19% Similarity=0.099 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
..++.|+|.|..||||+++.+.|.+.++-..+
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~ 69 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGI 69 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCcCcc
Confidence 47899999999999999999999988854433
No 385
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.34 E-value=0.005 Score=50.98 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccchh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISMG 95 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~---~--~~~is~~ 95 (230)
.++..++|.|+||+|||++|..++... | +.++++.
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 368889999999999999999886532 3 4466654
No 386
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.34 E-value=0.0036 Score=51.28 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 387
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.0034 Score=61.68 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+..++|+||||+||||+|+.|++.+++.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 4457999999999999999999999875
No 388
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.33 E-value=0.0049 Score=48.00 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~ 89 (230)
..+.+|++.|.=|+||||+++.+++.+|+
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 46778999999999999999999999985
No 389
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.33 E-value=0.0035 Score=51.51 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477789999999999999999998654
No 390
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.0039 Score=59.51 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+..++|.||+|+||||+|+.||+.+++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999874
No 391
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.0037 Score=58.71 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~ 89 (230)
+..++|.||||+||||+|+.|++.+++
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345889999999999999999998876
No 392
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.33 E-value=0.0036 Score=48.56 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~ 85 (230)
+|+|+|+|||||||+..++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999864
No 393
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.04 Score=52.79 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~ 89 (230)
-+..++|.|++|+||||+++.|++.+++
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456899999999999999999999987
No 394
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.0037 Score=56.52 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+.-++|.||||+||||+|..+|+.+.+.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3459999999999999999999999774
No 395
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.31 E-value=0.0038 Score=47.96 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+|+++|.|||||||+..++..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999875
No 396
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.31 E-value=0.0037 Score=51.24 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997644
No 397
>PF13479 AAA_24: AAA domain
Probab=96.30 E-value=0.0028 Score=52.35 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNL 83 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~L 83 (230)
++.+++|.|+||+||||+|..+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5688999999999999999987
No 398
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.30 E-value=0.0036 Score=48.36 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+|+++|+|||||||+..++...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998754
No 399
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.0042 Score=56.03 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++.+|+++||+|+||||.+..||..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998765
No 400
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.30 E-value=0.0039 Score=51.00 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999997644
No 401
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.28 E-value=0.0039 Score=52.33 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.++-.+.|+|++||||||+++.|+-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 4777899999999999999999964
No 402
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.28 E-value=0.0037 Score=55.21 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
..+-.++|+||+||||||+-+.||-
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3666799999999999999999974
No 403
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.28 E-value=0.004 Score=50.98 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-++.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998543
No 404
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.052 Score=49.15 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
.+.-++|.||||+|||++|..+|+.+.+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 35569999999999999999999988764
No 405
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.28 E-value=0.0037 Score=52.42 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+..++++|.||||+||||-...||..+
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 356689999999999999999998865
No 406
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.28 E-value=0.0039 Score=50.75 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998644
No 407
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.28 E-value=0.004 Score=51.32 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999997543
No 408
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.27 E-value=0.004 Score=58.14 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+..++|.||||+||||+|+.|++.+++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4458999999999999999999999874
No 409
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.27 E-value=0.0041 Score=43.38 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 026951 66 WVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+++.|.+|+||||++..|+..+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l 23 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAAL 23 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999998866
No 410
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.27 E-value=0.025 Score=55.76 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+.-++|.|++|+||||++..|++.+++.
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 3458999999999999999999999874
No 411
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.004 Score=51.91 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477789999999999999999998644
No 412
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.27 E-value=0.0045 Score=48.36 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
+.-++|+|++|+||||+|..|.++ |..+++
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lva 43 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVA 43 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEE
Confidence 456999999999999999888653 565553
No 413
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0041 Score=50.87 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998643
No 414
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.26 E-value=0.0037 Score=52.04 Aligned_cols=27 Identities=33% Similarity=0.382 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 467789999999999999999997543
No 415
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0037 Score=51.16 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++ ++.|+|++||||||+.+.|+..+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 46 89999999999999999998543
No 416
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.26 E-value=0.0051 Score=51.08 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=23.7
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 59 PPRRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 59 ~~~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
...++..+.|.|+||||||++|..++-
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~ 41 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAV 41 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345888999999999999999999974
No 417
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.25 E-value=0.0039 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.|.|+|++||||||++..|.+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999998865
No 418
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.25 E-value=0.0042 Score=52.28 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.+.|+||+||||||+-+.+|--
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47778999999999999999999753
No 419
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.25 E-value=0.0042 Score=51.16 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998644
No 420
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.25 E-value=0.0031 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..++|.|+||+||||+|+.|+.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 356799999999999999999963
No 421
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.25 E-value=0.0044 Score=49.48 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 367789999999999999999997654
No 422
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0042 Score=51.67 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477789999999999999999998654
No 423
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0043 Score=50.87 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997643
No 424
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0058 Score=55.32 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~ 95 (230)
-+|+++||.|||||.+|+.||+-+++|+.-.|
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcD 258 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICD 258 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEec
Confidence 47999999999999999999999999876443
No 425
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.24 E-value=0.0038 Score=53.17 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=28.0
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~ 95 (230)
..++..++|.|+||+|||++|..++... .+.|+++.
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 3478889999999999999999985532 35667654
No 426
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.24 E-value=0.0049 Score=50.55 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.+++|.|+|++||||||+...+.+.++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 578899999999999999999987654
No 427
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.24 E-value=0.0033 Score=60.35 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~ 95 (230)
.-|+|.||||+||||+++.+++..+++++.++
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is 217 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 217 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 34999999999999999999999998876543
No 428
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.0045 Score=49.44 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997543
No 429
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.0042 Score=51.81 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 477789999999999999999997543
No 430
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.23 E-value=0.0039 Score=47.35 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~ 85 (230)
+|+++|+|||||||+...|..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998854
No 431
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.23 E-value=0.0044 Score=51.32 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467789999999999999999998765
No 432
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=96.23 E-value=0.099 Score=44.72 Aligned_cols=32 Identities=13% Similarity=-0.004 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
.++.|+|.|..||||+...+.|.+.++-.++.
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~ 86 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQ 86 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcCCCeeE
Confidence 58999999999999999999999888654443
No 433
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.23 E-value=0.0052 Score=51.81 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..+.+++|+|++||||||++..|-..+
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999886655
No 434
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.23 E-value=0.0044 Score=47.25 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..|+++|++|+||||+...|...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999998643
No 435
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.22 E-value=0.0065 Score=50.27 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=29.5
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 026951 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (230)
Q Consensus 59 ~~~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~ 95 (230)
...++..+.|.|+||+|||++|..++... ++.++++.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34588899999999999999999997533 45677765
No 436
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.22 E-value=0.0045 Score=51.02 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997654
No 437
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.0046 Score=57.97 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+..++|+||||+||||+|+.|++.+++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4558999999999999999999999774
No 438
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.21 E-value=0.0044 Score=50.53 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999997643
No 439
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.21 E-value=0.0046 Score=47.72 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+|+|+|.|||||||++.++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~ 23 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ 23 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998874
No 440
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.21 E-value=0.0019 Score=54.81 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=28.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~ 95 (230)
.+++..++|.|+||||||+++.+++... .+.+|+++
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3488899999999999999999985432 35566664
No 441
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.20 E-value=0.0045 Score=51.79 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467789999999999999999997544
No 442
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0045 Score=51.75 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-++.|+|+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997643
No 443
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.0049 Score=55.64 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++.+|+|+||+||||||.+..||..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999998755
No 444
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.20 E-value=0.0048 Score=46.48 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+|+++|.+||||||+...|....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999986543
No 445
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.20 E-value=0.0049 Score=50.10 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh----CCCccc
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL----EVPHIS 93 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~----~~~~is 93 (230)
..|-+.||||||||++...+.+.+ .+.+|.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~ 47 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVIT 47 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEe
Confidence 789999999999999987765544 555443
No 446
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0049 Score=49.01 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997643
No 447
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0044 Score=51.11 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997543
No 448
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.19 E-value=0.0042 Score=47.95 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~ 85 (230)
+|+++|+|||||||+..++..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999864
No 449
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.18 E-value=0.0038 Score=47.84 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~ 85 (230)
+|+|+|++||||||+...+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999864
No 450
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.18 E-value=0.0048 Score=51.19 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.++|+|++||||||+.+.|+-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46778999999999999999999754
No 451
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.18 E-value=0.005 Score=48.69 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+++.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999997654
No 452
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.18 E-value=0.0046 Score=51.13 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999998654
No 453
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.18 E-value=0.0049 Score=49.93 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-++.|+|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999997654
No 454
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.18 E-value=0.0048 Score=51.50 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 477889999999999999999997543
No 455
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.17 E-value=0.0043 Score=48.00 Aligned_cols=21 Identities=19% Similarity=0.520 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~ 85 (230)
+|+|+|++||||||+...|..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999854
No 456
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.17 E-value=0.0049 Score=51.20 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997543
No 457
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.17 E-value=0.005 Score=50.07 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+..+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477889999999999999999997644
No 458
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.17 E-value=0.0053 Score=52.30 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
...|+|+|++||||||+...|.+..
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred ceEEEEECCCccccchHHHHHhhhc
Confidence 5789999999999999999998766
No 459
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.16 E-value=0.0049 Score=51.35 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998654
No 460
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.16 E-value=0.005 Score=48.75 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++..++|+|++|+||||+...|....
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44789999999999999999987543
No 461
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.0048 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.++-.+.|+|++||||||+.+.|+-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4677899999999999999999984
No 462
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.15 E-value=0.0045 Score=50.76 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467789999999999999999997644
No 463
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.15 E-value=0.0047 Score=52.08 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.++|+|++||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998654
No 464
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.15 E-value=0.0047 Score=47.57 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~ 85 (230)
+|+++|+|||||||+...+..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~ 22 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMY 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998864
No 465
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.14 E-value=0.0055 Score=48.70 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467789999999999999999998654
No 466
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.14 E-value=0.0069 Score=56.51 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=27.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH----hC--CCccchh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKL----LE--VPHISMG 95 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~----~~--~~~is~~ 95 (230)
..++-.++|.|+||+|||++|..++.. .| +.+|++.
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~e 69 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFE 69 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 347889999999999999999987432 13 5566654
No 467
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.14 E-value=0.0043 Score=55.06 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.+.+|+|+|++||||||+.+.|...+.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 456899999999999999999987663
No 468
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.036 Score=49.58 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=58.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHHHHHcCCCChHHHHHHH-H-------HHCCCCC-CHH
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQELSPRSALYKQIAN-A-------VNEGKLV-PED 125 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~---~~--~~is~~dll~~~~~~~~~~~~~i~~-~-------l~~g~~v-~de 125 (230)
..++-+|.+.|.-||||||.|..||-.| |+ ..++. |.+|.-.. .+++. . ...+..+ |-.
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lvca-DTFRagAf------DQLkqnA~k~~iP~ygsyte~dpv~ 170 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCA-DTFRAGAF------DQLKQNATKARVPFYGSYTEADPVK 170 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEee-cccccchH------HHHHHHhHhhCCeeEecccccchHH
Confidence 3577899999999999999999998766 33 23333 33332110 01111 0 1111111 222
Q ss_pred HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhcc------CCcCE-EEEEecCH
Q 026951 126 VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI------VDVDL-VINFKSIE 177 (230)
Q Consensus 126 ~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~------~~~d~-vI~L~~~~ 177 (230)
+..+-+ ++.++. .-.-+|+|..-|-..+.+.|++. ..||. +++++++-
T Consensus 171 ia~egv-~~fKke---~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 171 IASEGV-DRFKKE---NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred HHHHHH-HHHHhc---CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 222223 233331 23456778877877777777654 46775 55667765
No 469
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.14 E-value=0.0051 Score=51.71 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999997543
No 470
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0053 Score=50.64 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998643
No 471
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.13 E-value=0.0055 Score=49.03 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+..+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477789999999999999999997644
No 472
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.13 E-value=0.005 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+|+++|++||||||+...|...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998653
No 473
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.13 E-value=0.0051 Score=51.06 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999998654
No 474
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.12 E-value=0.0053 Score=50.64 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-+++|+|+.||||||+.+.|+..
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999754
No 475
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.12 E-value=0.0054 Score=50.06 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 467789999999999999999997543
No 476
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.0052 Score=51.52 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 477
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.012 Score=50.06 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHHHHcCCCC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQELSPRS 106 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~i--s~~dll~~~~~~~~ 106 (230)
.|.-+++.||||+|||.+++.+|..-...+| .-++.+++.+..+.
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegp 234 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGP 234 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCc
Confidence 4455899999999999999999987755444 44577777665443
No 478
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.10 E-value=0.0053 Score=51.07 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-+++|+|+.||||||+.+.|+-.+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998654
No 479
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.10 E-value=0.0055 Score=49.12 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 480
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.09 E-value=0.0054 Score=54.35 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|.||||+|||++++.+.+.+
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 55679999999999999999998754
No 481
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.09 E-value=0.0057 Score=50.70 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-++.|+|++||||||+.+.|+..+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 467789999999999999999998654
No 482
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.09 E-value=0.004 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.296 Sum_probs=19.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 026951 66 WVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~ 87 (230)
|+|.|+|||||||..+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5899999999999999998874
No 483
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.09 E-value=0.0052 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=16.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..+|.||||+||||+...+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 68999999999997666665544
No 484
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.09 E-value=0.0054 Score=49.32 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 477789999999999999999997643
No 485
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.09 E-value=0.0055 Score=51.27 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998543
No 486
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.09 E-value=0.0054 Score=51.05 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-++.|+|++||||||+.+.|+..+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997653
No 487
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.09 E-value=0.0052 Score=52.27 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.++..+.|+||.||||||+-+.|+.-+.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4688999999999999999999987553
No 488
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.09 E-value=0.0055 Score=50.77 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999998654
No 489
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.09 E-value=0.0054 Score=51.22 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.+.|+|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47778999999999999999999865
No 490
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.09 E-value=0.0055 Score=48.43 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+|+|+|.||+||||+...+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999874
No 491
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.09 E-value=0.0052 Score=47.52 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+.+|+++|.+|+||||+...|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 567999999999999999999654
No 492
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.0055 Score=51.63 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-++.|+|++||||||+.+.|+-.+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467789999999999999999998653
No 493
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0061 Score=48.34 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+-.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467789999999999999999997654
No 494
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0056 Score=51.88 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997543
No 495
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0055 Score=51.65 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-++.|+|+.||||||+.+.|+..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46778999999999999999999854
No 496
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.07 E-value=0.021 Score=51.25 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=26.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR 99 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~ 99 (230)
.++|+||+||||||+...|.+.+. ...+++.|-++
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCch
Confidence 588999999999999999987662 33555555444
No 497
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.07 E-value=0.0054 Score=51.93 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+++.|+..+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477789999999999999999998654
No 498
>PRK10908 cell division protein FtsE; Provisional
Probab=96.06 E-value=0.0059 Score=50.41 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477889999999999999999997544
No 499
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.06 E-value=0.006 Score=48.08 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999997543
No 500
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.06 E-value=0.0058 Score=51.42 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467789999999999999999998654
Done!