Query 026951
Match_columns 230
No_of_seqs 173 out of 1311
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 03:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026951.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026951hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sr0_A Adenylate kinase; phosp 100.0 9.9E-39 3.4E-43 261.9 14.7 161 64-229 1-174 (206)
2 3gmt_A Adenylate kinase; ssgci 100.0 9.9E-37 3.4E-41 253.0 17.4 165 63-229 8-188 (230)
3 3umf_A Adenylate kinase; rossm 100.0 5.2E-35 1.8E-39 241.4 18.2 158 59-229 25-183 (217)
4 3tlx_A Adenylate kinase 2; str 100.0 2.4E-31 8.3E-36 222.9 17.2 167 61-229 27-213 (243)
5 3dl0_A Adenylate kinase; phosp 100.0 1E-29 3.5E-34 208.3 14.7 164 64-229 1-184 (216)
6 3fb4_A Adenylate kinase; psych 100.0 3.4E-29 1.2E-33 205.0 14.9 164 64-229 1-184 (216)
7 3be4_A Adenylate kinase; malar 100.0 1.8E-28 6.1E-33 201.7 15.8 165 62-228 4-188 (217)
8 1ak2_A Adenylate kinase isoenz 100.0 6.6E-28 2.2E-32 200.3 18.0 167 60-228 13-199 (233)
9 1aky_A Adenylate kinase; ATP:A 100.0 7.5E-28 2.6E-32 198.0 18.1 165 62-228 3-188 (220)
10 1e4v_A Adenylate kinase; trans 100.0 6E-28 2.1E-32 197.9 14.4 164 64-229 1-180 (214)
11 2xb4_A Adenylate kinase; ATP-b 99.9 3.4E-27 1.2E-31 195.0 16.2 163 64-229 1-186 (223)
12 1zd8_A GTP:AMP phosphotransfer 99.9 1.3E-26 4.4E-31 191.6 16.3 165 61-228 5-184 (227)
13 1zak_A Adenylate kinase; ATP:A 99.9 3.9E-26 1.3E-30 187.9 15.7 167 61-228 3-181 (222)
14 2cdn_A Adenylate kinase; phosp 99.9 1.1E-23 3.8E-28 170.5 15.8 151 59-227 16-171 (201)
15 2c95_A Adenylate kinase 1; tra 99.9 9.5E-23 3.2E-27 163.6 16.8 153 62-227 8-161 (196)
16 1ukz_A Uridylate kinase; trans 99.9 8.3E-23 2.8E-27 165.4 15.4 155 61-227 13-169 (203)
17 2bwj_A Adenylate kinase 5; pho 99.9 1.3E-22 4.4E-27 163.1 15.7 153 62-227 11-164 (199)
18 1qf9_A UMP/CMP kinase, protein 99.9 2.8E-22 9.5E-27 160.1 16.7 151 62-227 5-159 (194)
19 3cm0_A Adenylate kinase; ATP-b 99.9 1.5E-22 5E-27 161.5 13.7 147 62-227 3-154 (186)
20 1tev_A UMP-CMP kinase; ploop, 99.9 5.6E-22 1.9E-26 158.5 15.2 155 62-228 2-163 (196)
21 2bbw_A Adenylate kinase 4, AK4 99.8 1.1E-19 3.8E-24 151.6 18.0 164 62-228 26-204 (246)
22 3lw7_A Adenylate kinase relate 99.7 9.6E-17 3.3E-21 125.3 12.2 118 64-189 2-124 (179)
23 1ly1_A Polynucleotide kinase; 99.7 8.6E-17 2.9E-21 126.8 8.6 136 63-224 2-147 (181)
24 2pbr_A DTMP kinase, thymidylat 99.6 8.2E-15 2.8E-19 116.6 14.9 114 64-188 1-144 (195)
25 1ltq_A Polynucleotide kinase; 99.6 1.7E-15 5.9E-20 129.4 7.9 142 63-225 2-148 (301)
26 4eaq_A DTMP kinase, thymidylat 99.6 3E-14 1E-18 117.9 13.3 124 60-189 23-171 (229)
27 3vaa_A Shikimate kinase, SK; s 99.6 1.4E-14 4.8E-19 116.9 10.7 113 61-187 23-139 (199)
28 3t61_A Gluconokinase; PSI-biol 99.5 5.4E-14 1.9E-18 113.4 12.4 117 62-190 17-134 (202)
29 2rhm_A Putative kinase; P-loop 99.5 2.2E-14 7.7E-19 114.2 9.3 118 61-188 3-126 (193)
30 2iyv_A Shikimate kinase, SK; t 99.5 1.5E-13 5.1E-18 109.0 13.9 111 63-188 2-115 (184)
31 2z0h_A DTMP kinase, thymidylat 99.5 4.5E-13 1.5E-17 106.9 14.7 118 64-188 1-143 (197)
32 1kht_A Adenylate kinase; phosp 99.5 1.5E-13 5.3E-18 108.9 11.7 119 63-188 3-139 (192)
33 2wwf_A Thymidilate kinase, put 99.5 3.1E-14 1.1E-18 115.1 7.5 123 62-187 9-151 (212)
34 1zuh_A Shikimate kinase; alpha 99.5 8.5E-14 2.9E-18 108.9 9.6 107 63-188 7-118 (168)
35 1nks_A Adenylate kinase; therm 99.5 6.5E-14 2.2E-18 111.2 8.4 119 64-188 2-140 (194)
36 3trf_A Shikimate kinase, SK; a 99.5 5.3E-13 1.8E-17 105.7 13.4 110 62-184 4-115 (185)
37 1jjv_A Dephospho-COA kinase; P 99.5 8.2E-13 2.8E-17 106.6 14.2 120 63-188 2-145 (206)
38 2pt5_A Shikimate kinase, SK; a 99.5 1.5E-13 5.2E-18 107.2 9.4 110 64-188 1-114 (168)
39 1vht_A Dephospho-COA kinase; s 99.5 3.9E-13 1.3E-17 109.6 12.1 122 62-188 3-147 (218)
40 4hlc_A DTMP kinase, thymidylat 99.5 1.6E-12 5.4E-17 105.9 14.8 117 62-189 1-147 (205)
41 1y63_A LMAJ004144AAA protein; 99.5 9.9E-14 3.4E-18 110.6 7.3 112 61-189 8-123 (184)
42 2v54_A DTMP kinase, thymidylat 99.5 1.1E-12 3.7E-17 105.4 13.2 114 62-182 3-137 (204)
43 4edh_A DTMP kinase, thymidylat 99.4 1.8E-12 6.3E-17 106.1 14.7 116 62-188 5-153 (213)
44 1nn5_A Similar to deoxythymidy 99.4 2.7E-13 9.2E-18 109.7 9.6 119 62-187 8-150 (215)
45 1e6c_A Shikimate kinase; phosp 99.4 3.1E-12 1.1E-16 100.0 15.4 110 63-187 2-116 (173)
46 3v9p_A DTMP kinase, thymidylat 99.4 3.7E-13 1.3E-17 111.3 10.4 126 61-188 23-173 (227)
47 2plr_A DTMP kinase, probable t 99.4 8.1E-13 2.8E-17 106.4 10.7 112 62-188 3-144 (213)
48 1knq_A Gluconate kinase; ALFA/ 99.4 7.6E-12 2.6E-16 98.2 15.9 117 62-190 7-127 (175)
49 3kb2_A SPBC2 prophage-derived 99.4 2.7E-12 9.4E-17 100.0 12.8 99 64-188 2-116 (173)
50 3a4m_A L-seryl-tRNA(SEC) kinas 99.4 8.3E-13 2.8E-17 111.0 10.3 110 62-188 3-121 (260)
51 4eun_A Thermoresistant glucoki 99.4 4.1E-12 1.4E-16 102.3 13.9 119 62-191 28-149 (200)
52 2vli_A Antibiotic resistance p 99.4 5.3E-12 1.8E-16 99.6 14.3 112 62-188 4-126 (183)
53 1cke_A CK, MSSA, protein (cyti 99.4 3.9E-13 1.3E-17 109.9 7.9 117 63-185 5-159 (227)
54 1via_A Shikimate kinase; struc 99.4 1.5E-13 5.1E-18 108.3 4.9 108 64-188 5-114 (175)
55 4i1u_A Dephospho-COA kinase; s 99.4 1.7E-12 5.8E-17 106.0 10.4 122 63-189 9-154 (210)
56 3lv8_A DTMP kinase, thymidylat 99.4 1.5E-12 5E-17 108.3 10.1 120 62-188 26-176 (236)
57 3nwj_A ATSK2; P loop, shikimat 99.4 2.9E-12 9.8E-17 107.4 11.7 112 63-187 48-162 (250)
58 4tmk_A Protein (thymidylate ki 99.4 5E-12 1.7E-16 103.5 12.8 119 62-188 2-154 (213)
59 2f6r_A COA synthase, bifunctio 99.4 1.5E-12 5.2E-17 110.8 9.7 123 60-188 72-221 (281)
60 3iij_A Coilin-interacting nucl 99.4 4.7E-13 1.6E-17 105.8 5.9 110 62-189 10-119 (180)
61 2if2_A Dephospho-COA kinase; a 99.3 3.4E-12 1.2E-16 102.7 9.3 117 64-188 2-145 (204)
62 1kag_A SKI, shikimate kinase I 99.3 2.6E-12 8.8E-17 100.6 8.0 113 62-188 3-118 (173)
63 3zvl_A Bifunctional polynucleo 99.3 8.1E-12 2.8E-16 111.9 12.0 101 60-189 255-359 (416)
64 1uf9_A TT1252 protein; P-loop, 99.3 1.1E-11 3.7E-16 99.2 10.6 118 61-188 6-146 (203)
65 2grj_A Dephospho-COA kinase; T 99.3 1.5E-11 5.1E-16 99.1 8.8 115 62-184 11-147 (192)
66 3ake_A Cytidylate kinase; CMP 99.2 5.3E-11 1.8E-15 95.5 11.6 115 65-189 4-158 (208)
67 3hjn_A DTMP kinase, thymidylat 99.2 1.6E-10 5.4E-15 93.4 14.3 114 64-188 1-143 (197)
68 1gvn_B Zeta; postsegregational 99.2 7.5E-11 2.6E-15 100.6 13.0 119 61-188 31-163 (287)
69 2qor_A Guanylate kinase; phosp 99.2 4.2E-11 1.4E-15 96.7 10.6 136 61-222 10-164 (204)
70 3ld9_A DTMP kinase, thymidylat 99.2 3.7E-11 1.3E-15 99.0 10.3 117 61-184 19-163 (223)
71 2p5t_B PEZT; postsegregational 99.2 3.8E-11 1.3E-15 100.4 10.6 119 61-188 30-158 (253)
72 1uj2_A Uridine-cytidine kinase 99.2 1.2E-11 4.2E-16 103.2 6.5 117 61-188 20-172 (252)
73 1qhx_A CPT, protein (chloramph 99.2 2.7E-10 9.3E-15 89.3 13.9 120 62-190 2-136 (178)
74 1q3t_A Cytidylate kinase; nucl 99.2 3.6E-10 1.2E-14 93.2 14.0 116 61-184 14-170 (236)
75 2axn_A 6-phosphofructo-2-kinas 99.2 3.8E-10 1.3E-14 103.8 14.7 153 61-228 33-202 (520)
76 2jaq_A Deoxyguanosine kinase; 99.2 7.4E-11 2.5E-15 94.3 8.0 30 64-93 1-30 (205)
77 2h92_A Cytidylate kinase; ross 99.1 9.8E-11 3.3E-15 95.1 8.0 39 63-101 3-41 (219)
78 3tmk_A Thymidylate kinase; pho 99.1 2.8E-10 9.7E-15 93.3 8.6 115 62-186 4-146 (216)
79 2yvu_A Probable adenylyl-sulfa 99.1 7.1E-10 2.4E-14 87.9 10.0 107 61-185 11-131 (186)
80 1m7g_A Adenylylsulfate kinase; 99.0 1.4E-09 4.9E-14 88.0 11.1 109 61-184 23-149 (211)
81 2pez_A Bifunctional 3'-phospho 99.0 1.5E-09 5.2E-14 85.4 10.5 109 61-187 3-125 (179)
82 3fdi_A Uncharacterized protein 99.0 1.1E-09 3.7E-14 88.6 9.5 116 63-187 6-137 (201)
83 4e22_A Cytidylate kinase; P-lo 99.0 1.5E-09 5.2E-14 90.6 10.0 40 61-100 25-64 (252)
84 2qt1_A Nicotinamide riboside k 99.0 1.6E-09 5.5E-14 87.3 8.0 120 61-189 19-152 (207)
85 3hdt_A Putative kinase; struct 98.9 7.9E-09 2.7E-13 85.0 12.0 118 62-187 13-157 (223)
86 3r20_A Cytidylate kinase; stru 98.9 1.2E-08 4E-13 84.5 11.7 41 61-101 7-47 (233)
87 3uie_A Adenylyl-sulfate kinase 98.9 9.9E-09 3.4E-13 82.3 11.0 105 61-184 23-140 (200)
88 1x6v_B Bifunctional 3'-phospho 98.9 9.1E-09 3.1E-13 96.2 11.6 111 61-185 50-170 (630)
89 2ze6_A Isopentenyl transferase 98.9 3.1E-09 1.1E-13 88.8 7.2 123 64-189 2-140 (253)
90 1gtv_A TMK, thymidylate kinase 98.9 1.4E-10 4.7E-15 93.6 -1.3 122 65-189 2-155 (214)
91 1p5z_B DCK, deoxycytidine kina 98.8 1.6E-09 5.4E-14 90.8 4.2 33 61-93 22-55 (263)
92 1ex7_A Guanylate kinase; subst 98.8 1E-08 3.5E-13 82.1 8.2 132 66-224 4-154 (186)
93 3tau_A Guanylate kinase, GMP k 98.8 2.1E-08 7.2E-13 81.1 9.0 28 61-88 6-33 (208)
94 3tr0_A Guanylate kinase, GMP k 98.8 9.5E-08 3.2E-12 76.2 12.3 27 62-88 6-32 (205)
95 1a7j_A Phosphoribulokinase; tr 98.8 1.8E-08 6.1E-13 86.0 8.0 38 62-99 4-46 (290)
96 1bif_A 6-phosphofructo-2-kinas 98.7 1.2E-07 4E-12 86.0 13.7 152 61-227 37-205 (469)
97 2gks_A Bifunctional SAT/APS ki 98.7 8.8E-08 3E-12 88.5 11.9 111 62-186 371-489 (546)
98 2j41_A Guanylate kinase; GMP, 98.7 9.7E-09 3.3E-13 82.1 3.5 26 62-87 5-30 (207)
99 1p6x_A Thymidine kinase; P-loo 98.6 7.7E-08 2.6E-12 83.6 8.1 29 61-89 5-33 (334)
100 2bdt_A BH3686; alpha-beta prot 98.6 2.1E-07 7.3E-12 73.5 9.6 117 63-190 2-125 (189)
101 1zp6_A Hypothetical protein AT 98.6 4.6E-07 1.6E-11 71.4 11.1 115 61-189 7-128 (191)
102 3a00_A Guanylate kinase, GMP k 98.6 6.9E-08 2.3E-12 76.5 6.0 118 64-189 2-137 (186)
103 1m8p_A Sulfate adenylyltransfe 98.6 4.2E-07 1.4E-11 84.4 11.8 111 61-185 394-514 (573)
104 3ch4_B Pmkase, phosphomevalona 98.6 1.4E-06 4.7E-11 70.3 13.3 152 62-227 10-193 (202)
105 2ocp_A DGK, deoxyguanosine kin 98.5 1.1E-07 3.8E-12 78.3 6.6 28 62-89 1-29 (241)
106 3a8t_A Adenylate isopentenyltr 98.5 1.2E-07 4.1E-12 82.4 6.3 37 61-97 38-74 (339)
107 1rz3_A Hypothetical protein rb 98.5 9.8E-08 3.4E-12 76.6 5.4 118 61-188 20-165 (201)
108 2vp4_A Deoxynucleoside kinase; 98.4 7.7E-07 2.6E-11 72.9 8.4 26 61-86 18-43 (230)
109 3asz_A Uridine kinase; cytidin 98.3 7.1E-07 2.4E-11 71.6 6.4 37 62-98 5-43 (211)
110 1e2k_A Thymidine kinase; trans 98.3 2.1E-06 7.3E-11 74.4 9.0 27 62-88 3-29 (331)
111 1osn_A Thymidine kinase, VZV-T 98.3 3.9E-06 1.3E-10 73.0 10.4 29 61-89 10-39 (341)
112 1of1_A Thymidine kinase; trans 98.3 1.9E-05 6.7E-10 69.4 14.9 28 61-88 47-74 (376)
113 3lnc_A Guanylate kinase, GMP k 98.3 2.4E-06 8.1E-11 69.7 8.1 27 61-87 25-52 (231)
114 3tqc_A Pantothenate kinase; bi 98.2 2.7E-07 9.3E-12 79.8 1.8 36 61-96 90-132 (321)
115 3c8u_A Fructokinase; YP_612366 98.2 9.9E-07 3.4E-11 71.0 4.7 36 61-96 20-60 (208)
116 2jeo_A Uridine-cytidine kinase 98.2 4.7E-05 1.6E-09 62.7 14.8 30 61-90 23-52 (245)
117 1sq5_A Pantothenate kinase; P- 98.1 2.2E-06 7.5E-11 73.4 5.3 36 61-96 78-120 (308)
118 3crm_A TRNA delta(2)-isopenten 98.1 1.2E-06 4E-11 75.8 2.2 36 62-97 4-39 (323)
119 3cr8_A Sulfate adenylyltranfer 97.9 1.3E-05 4.6E-10 74.0 7.0 38 61-98 367-410 (552)
120 4gp7_A Metallophosphoesterase; 97.9 0.00055 1.9E-08 53.1 14.2 107 62-188 8-122 (171)
121 3d3q_A TRNA delta(2)-isopenten 97.8 5E-06 1.7E-10 72.3 2.3 35 63-97 7-41 (340)
122 1s96_A Guanylate kinase, GMP k 97.8 0.00027 9.1E-09 57.5 12.1 28 61-88 14-41 (219)
123 3t15_A Ribulose bisphosphate c 97.8 1.1E-05 3.8E-10 68.4 4.0 38 61-98 34-73 (293)
124 3czq_A Putative polyphosphate 97.8 3.5E-05 1.2E-09 65.8 6.9 105 61-190 84-214 (304)
125 1dek_A Deoxynucleoside monopho 97.8 1.4E-05 4.9E-10 66.2 4.2 39 64-102 2-40 (241)
126 3foz_A TRNA delta(2)-isopenten 97.8 1E-05 3.4E-10 69.5 3.1 35 62-96 9-43 (316)
127 3exa_A TRNA delta(2)-isopenten 97.8 9.7E-06 3.3E-10 69.7 2.7 36 62-97 2-37 (322)
128 1kgd_A CASK, peripheral plasma 97.7 2.7E-05 9.2E-10 61.1 4.0 28 61-88 3-30 (180)
129 3ec2_A DNA replication protein 97.6 3.9E-05 1.3E-09 59.9 4.4 39 62-100 37-81 (180)
130 4b4t_M 26S protease regulatory 97.6 2.7E-05 9.3E-10 69.8 3.5 33 62-94 214-246 (434)
131 4b4t_K 26S protease regulatory 97.6 3.2E-05 1.1E-09 69.2 3.6 32 63-94 206-237 (428)
132 2ga8_A Hypothetical 39.9 kDa p 97.6 1.4E-05 4.9E-10 69.8 1.2 30 62-91 23-52 (359)
133 4b4t_L 26S protease subunit RP 97.6 3.2E-05 1.1E-09 69.4 3.5 33 62-94 214-246 (437)
134 2qz4_A Paraplegin; AAA+, SPG7, 97.6 3.9E-05 1.3E-09 63.1 3.7 33 62-94 38-70 (262)
135 4b4t_J 26S protease regulatory 97.6 2.9E-05 9.9E-10 68.9 3.0 32 63-94 182-213 (405)
136 1lv7_A FTSH; alpha/beta domain 97.6 4.6E-05 1.6E-09 62.9 3.9 31 64-94 46-76 (257)
137 3cf0_A Transitional endoplasmi 97.5 4.9E-05 1.7E-09 64.6 3.2 40 62-101 48-89 (301)
138 3eph_A TRNA isopentenyltransfe 97.5 4E-05 1.4E-09 68.0 2.6 34 63-96 2-35 (409)
139 3b9p_A CG5977-PA, isoform A; A 97.5 5.3E-05 1.8E-09 63.7 3.2 32 62-93 53-84 (297)
140 3h4m_A Proteasome-activating n 97.5 5.8E-05 2E-09 63.0 3.4 33 62-94 50-82 (285)
141 1g41_A Heat shock protein HSLU 97.5 5.1E-05 1.7E-09 68.2 3.2 33 63-95 50-82 (444)
142 4b4t_H 26S protease regulatory 97.5 4.5E-05 1.5E-09 68.7 2.8 33 62-94 242-274 (467)
143 3hws_A ATP-dependent CLP prote 97.5 5.8E-05 2E-09 65.7 3.5 33 62-94 50-82 (363)
144 1d2n_A N-ethylmaleimide-sensit 97.5 6.8E-05 2.3E-09 62.4 3.7 33 62-94 63-95 (272)
145 3eie_A Vacuolar protein sortin 97.5 7.7E-05 2.6E-09 63.9 4.1 37 62-98 50-88 (322)
146 4b4t_I 26S protease regulatory 97.4 6.5E-05 2.2E-09 67.2 3.5 33 62-94 215-247 (437)
147 1g8f_A Sulfate adenylyltransfe 97.4 6.3E-05 2.2E-09 68.8 3.2 35 62-96 394-435 (511)
148 2x8a_A Nuclear valosin-contain 97.4 7.4E-05 2.5E-09 62.8 3.3 28 66-93 47-74 (274)
149 3ney_A 55 kDa erythrocyte memb 97.4 0.00011 3.7E-09 59.0 4.1 28 61-88 17-44 (197)
150 1ofh_A ATP-dependent HSL prote 97.4 8.1E-05 2.8E-09 62.5 3.3 31 63-93 50-80 (310)
151 2r62_A Cell division protease 97.4 5.4E-05 1.9E-09 62.7 1.9 29 66-94 47-75 (268)
152 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.00011 3.9E-09 63.1 3.9 31 62-92 44-75 (322)
153 1um8_A ATP-dependent CLP prote 97.3 9.7E-05 3.3E-09 64.5 3.3 32 63-94 72-103 (376)
154 3czp_A Putative polyphosphate 97.3 0.0006 2.1E-08 62.1 8.5 106 61-191 41-172 (500)
155 2qmh_A HPR kinase/phosphorylas 97.3 0.0001 3.4E-09 59.4 2.8 33 62-95 33-65 (205)
156 3syl_A Protein CBBX; photosynt 97.3 0.00012 4.1E-09 61.7 3.2 26 62-87 66-91 (309)
157 2w58_A DNAI, primosome compone 97.3 0.00018 6.2E-09 56.9 4.0 37 64-100 55-96 (202)
158 1jbk_A CLPB protein; beta barr 97.3 0.00019 6.5E-09 55.2 4.0 26 62-87 42-67 (195)
159 2p65_A Hypothetical protein PF 97.3 0.00011 3.6E-09 56.7 2.4 26 62-87 42-67 (187)
160 1ye8_A Protein THEP1, hypothet 97.3 0.00015 5.2E-09 57.0 3.4 26 64-89 1-26 (178)
161 1ixz_A ATP-dependent metallopr 97.3 0.00013 4.6E-09 59.9 3.1 29 66-94 52-80 (254)
162 2qp9_X Vacuolar protein sortin 97.3 0.00015 5E-09 63.2 3.5 36 63-98 84-121 (355)
163 1lvg_A Guanylate kinase, GMP k 97.3 0.00014 4.9E-09 57.9 3.1 26 62-87 3-28 (198)
164 1odf_A YGR205W, hypothetical 3 97.2 0.00022 7.6E-09 60.5 4.4 28 61-88 29-56 (290)
165 2c9o_A RUVB-like 1; hexameric 97.2 0.00016 5.4E-09 65.1 3.6 33 62-94 62-96 (456)
166 3d8b_A Fidgetin-like protein 1 97.2 0.00016 5.5E-09 62.9 3.2 33 62-94 116-148 (357)
167 1in4_A RUVB, holliday junction 97.2 0.00021 7.3E-09 61.5 3.9 28 64-91 52-79 (334)
168 3bos_A Putative DNA replicatio 97.2 0.00026 8.7E-09 56.9 3.9 36 62-97 51-91 (242)
169 3czp_A Putative polyphosphate 97.2 0.00062 2.1E-08 62.0 6.9 106 61-191 298-429 (500)
170 3pfi_A Holliday junction ATP-d 97.2 0.00022 7.4E-09 61.0 3.5 32 63-94 55-86 (338)
171 3n70_A Transport activator; si 97.2 0.00025 8.6E-09 53.5 3.4 24 64-87 25-48 (145)
172 1tue_A Replication protein E1; 97.1 0.00023 7.7E-09 57.6 2.9 29 62-90 57-85 (212)
173 1iy2_A ATP-dependent metallopr 97.1 0.00023 7.9E-09 59.4 3.1 29 66-94 76-104 (278)
174 2ce7_A Cell division protein F 97.1 0.00027 9.2E-09 64.1 3.7 31 64-94 50-80 (476)
175 3vfd_A Spastin; ATPase, microt 97.1 0.00024 8.4E-09 62.3 3.3 32 63-94 148-179 (389)
176 3cf2_A TER ATPase, transitiona 97.1 0.00053 1.8E-08 65.9 5.8 119 62-188 510-660 (806)
177 1z6g_A Guanylate kinase; struc 97.1 0.00031 1.1E-08 56.8 3.3 27 61-87 21-47 (218)
178 3cf2_A TER ATPase, transitiona 97.0 0.00023 8E-09 68.3 2.8 37 62-98 237-275 (806)
179 1znw_A Guanylate kinase, GMP k 97.0 0.00041 1.4E-08 55.4 3.7 29 60-88 17-45 (207)
180 1sxj_A Activator 1 95 kDa subu 97.0 0.00031 1.1E-08 64.2 3.3 33 62-94 76-108 (516)
181 2kjq_A DNAA-related protein; s 97.0 0.00042 1.4E-08 52.8 3.4 26 62-87 35-60 (149)
182 3aez_A Pantothenate kinase; tr 97.0 0.00049 1.7E-08 59.0 4.1 28 60-87 87-114 (312)
183 1svm_A Large T antigen; AAA+ f 97.0 0.00045 1.5E-08 60.8 3.9 33 61-93 167-199 (377)
184 2zan_A Vacuolar protein sortin 97.0 0.00034 1.2E-08 62.7 3.1 37 63-99 167-206 (444)
185 1l8q_A Chromosomal replication 97.0 0.00045 1.5E-08 58.9 3.6 38 62-99 36-78 (324)
186 3uk6_A RUVB-like 2; hexameric 96.9 0.0005 1.7E-08 59.3 3.7 27 63-89 70-96 (368)
187 3co5_A Putative two-component 96.9 0.00016 5.3E-09 54.6 0.3 25 64-88 28-52 (143)
188 1hqc_A RUVB; extended AAA-ATPa 96.9 0.00045 1.5E-08 58.5 3.1 29 64-92 39-67 (324)
189 2chg_A Replication factor C sm 96.9 0.00056 1.9E-08 53.8 3.5 23 65-87 40-62 (226)
190 1njg_A DNA polymerase III subu 96.9 0.0006 2.1E-08 54.2 3.7 26 64-89 46-71 (250)
191 4fcw_A Chaperone protein CLPB; 96.9 0.00063 2.2E-08 57.2 3.9 24 64-87 48-71 (311)
192 3pvs_A Replication-associated 96.9 0.0005 1.7E-08 61.8 3.5 31 64-94 51-81 (447)
193 2qgz_A Helicase loader, putati 96.9 0.00054 1.8E-08 58.5 3.4 39 63-101 152-196 (308)
194 3pxg_A Negative regulator of g 96.9 0.0007 2.4E-08 61.1 4.2 26 62-87 200-225 (468)
195 2r44_A Uncharacterized protein 96.9 0.00034 1.1E-08 59.8 2.0 28 65-92 48-75 (331)
196 3m6a_A ATP-dependent protease 96.8 0.00053 1.8E-08 63.1 3.3 31 62-92 107-137 (543)
197 1xjc_A MOBB protein homolog; s 96.8 0.00076 2.6E-08 52.7 3.7 26 62-87 3-28 (169)
198 2ehv_A Hypothetical protein PH 96.8 0.00068 2.3E-08 55.0 3.5 24 61-84 28-51 (251)
199 1c9k_A COBU, adenosylcobinamid 96.8 0.00049 1.7E-08 54.4 2.5 24 66-90 2-25 (180)
200 4a74_A DNA repair and recombin 96.8 0.00073 2.5E-08 54.1 3.5 28 60-87 22-49 (231)
201 2dhr_A FTSH; AAA+ protein, hex 96.8 0.00062 2.1E-08 62.1 3.4 30 65-94 66-95 (499)
202 2cvh_A DNA repair and recombin 96.8 0.00079 2.7E-08 53.5 3.6 34 61-94 18-53 (220)
203 3hu3_A Transitional endoplasmi 96.8 0.00061 2.1E-08 61.9 3.1 37 62-98 237-275 (489)
204 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0009 3.1E-08 53.4 3.8 26 61-86 21-46 (235)
205 1htw_A HI0065; nucleotide-bind 96.7 0.0012 4E-08 50.9 4.1 27 61-87 31-57 (158)
206 2qby_B CDC6 homolog 3, cell di 96.7 0.0007 2.4E-08 58.5 3.1 26 62-87 44-69 (384)
207 2v1u_A Cell division control p 96.7 0.00048 1.6E-08 59.4 2.0 26 62-87 43-68 (387)
208 2v9p_A Replication protein E1; 96.7 0.001 3.5E-08 56.8 3.8 27 61-87 124-150 (305)
209 1np6_A Molybdopterin-guanine d 96.7 0.0012 4.2E-08 51.7 3.8 26 62-87 5-30 (174)
210 2qby_A CDC6 homolog 1, cell di 96.7 0.00088 3E-08 57.6 3.1 26 62-87 44-69 (386)
211 1vma_A Cell division protein F 96.7 0.0013 4.3E-08 56.3 4.0 27 61-87 102-128 (306)
212 3te6_A Regulatory protein SIR3 96.6 0.00074 2.5E-08 58.1 2.5 27 61-87 43-69 (318)
213 1upt_A ARL1, ADP-ribosylation 96.6 0.0016 5.6E-08 49.1 4.2 25 61-85 5-29 (171)
214 2wjg_A FEOB, ferrous iron tran 96.6 0.0015 5.2E-08 50.4 4.0 24 62-85 6-29 (188)
215 3pxi_A Negative regulator of g 96.6 0.0013 4.4E-08 62.7 4.2 26 62-87 200-225 (758)
216 2i3b_A HCR-ntpase, human cance 96.6 0.0011 3.9E-08 52.5 3.3 24 64-87 2-25 (189)
217 2eyu_A Twitching motility prot 96.6 0.0015 5.3E-08 54.4 4.2 27 61-87 23-49 (261)
218 1ypw_A Transitional endoplasmi 96.6 0.0008 2.7E-08 64.8 2.7 34 61-94 236-269 (806)
219 3e70_C DPA, signal recognition 96.6 0.0015 5.3E-08 56.3 4.2 27 61-87 127-153 (328)
220 1rj9_A FTSY, signal recognitio 96.6 0.0015 5E-08 55.8 4.0 26 62-87 101-126 (304)
221 2orw_A Thymidine kinase; TMTK, 96.6 0.0015 5E-08 51.5 3.7 25 63-87 3-27 (184)
222 1n0w_A DNA repair protein RAD5 96.6 0.0013 4.3E-08 53.1 3.4 26 61-86 22-47 (243)
223 3u61_B DNA polymerase accessor 96.6 0.00095 3.3E-08 56.7 2.6 32 63-94 48-79 (324)
224 1sxj_D Activator 1 41 kDa subu 96.5 0.0013 4.6E-08 56.0 3.5 24 65-88 60-83 (353)
225 1sxj_C Activator 1 40 kDa subu 96.5 0.0014 4.7E-08 56.3 3.4 24 65-88 48-71 (340)
226 1z2a_A RAS-related protein RAB 96.5 0.0016 5.4E-08 49.0 3.4 26 61-86 3-28 (168)
227 3b9q_A Chloroplast SRP recepto 96.5 0.0018 6.1E-08 55.2 4.1 27 61-87 98-124 (302)
228 1g8p_A Magnesium-chelatase 38 96.5 0.00094 3.2E-08 57.0 2.3 24 65-88 47-70 (350)
229 2dr3_A UPF0273 protein PH0284; 96.5 0.0016 5.5E-08 52.6 3.6 34 61-94 21-59 (247)
230 1kjw_A Postsynaptic density pr 96.5 0.0096 3.3E-07 50.5 8.6 114 62-188 104-236 (295)
231 1cr0_A DNA primase/helicase; R 96.5 0.0018 6E-08 54.4 3.8 27 61-87 33-59 (296)
232 2bjv_A PSP operon transcriptio 96.5 0.0015 5.2E-08 53.8 3.3 25 64-88 30-54 (265)
233 1iqp_A RFCS; clamp loader, ext 96.5 0.0019 6.4E-08 54.4 3.9 24 65-88 48-71 (327)
234 2r2a_A Uncharacterized protein 96.5 0.0019 6.5E-08 51.7 3.7 24 62-85 4-27 (199)
235 1ypw_A Transitional endoplasmi 96.5 0.00087 3E-08 64.5 2.0 33 62-94 510-542 (806)
236 1fnn_A CDC6P, cell division co 96.5 0.0017 5.9E-08 56.0 3.7 24 64-87 45-68 (389)
237 2px0_A Flagellar biosynthesis 96.5 0.0019 6.4E-08 54.9 3.8 27 61-87 103-129 (296)
238 2f1r_A Molybdopterin-guanine d 96.4 0.00083 2.8E-08 52.5 1.4 24 64-87 3-26 (171)
239 1m7b_A RND3/RHOE small GTP-bin 96.4 0.0017 5.9E-08 50.1 3.3 26 61-86 5-30 (184)
240 1u0j_A DNA replication protein 96.4 0.0023 8E-08 53.6 4.2 27 62-88 103-129 (267)
241 2z4s_A Chromosomal replication 96.4 0.0019 6.6E-08 57.7 4.0 36 63-98 130-172 (440)
242 3tif_A Uncharacterized ABC tra 96.4 0.0016 5.5E-08 53.4 3.1 27 61-87 29-55 (235)
243 1kao_A RAP2A; GTP-binding prot 96.4 0.002 6.8E-08 48.2 3.4 24 63-86 3-26 (167)
244 3nbx_X ATPase RAVA; AAA+ ATPas 96.4 0.002 6.7E-08 58.8 3.9 25 64-88 42-66 (500)
245 1sxj_E Activator 1 40 kDa subu 96.4 0.0016 5.3E-08 55.9 3.0 22 66-87 39-60 (354)
246 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0021 7.2E-08 55.4 3.7 33 62-94 122-156 (331)
247 1jr3_A DNA polymerase III subu 96.4 0.0022 7.4E-08 55.2 3.9 27 63-89 38-64 (373)
248 2wsm_A Hydrogenase expression/ 96.4 0.0026 9E-08 50.6 4.0 26 62-87 29-54 (221)
249 2ce2_X GTPase HRAS; signaling 96.4 0.0022 7.4E-08 47.8 3.3 24 63-86 3-26 (166)
250 3kl4_A SRP54, signal recogniti 96.3 0.0022 7.6E-08 57.3 3.8 26 62-87 96-121 (433)
251 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0018 6.2E-08 61.6 3.3 28 65-92 490-517 (758)
252 2dyk_A GTP-binding protein; GT 96.3 0.0026 9E-08 47.4 3.6 23 64-86 2-24 (161)
253 2chq_A Replication factor C sm 96.3 0.0021 7.3E-08 53.8 3.4 23 65-87 40-62 (319)
254 2pcj_A ABC transporter, lipopr 96.3 0.0019 6.4E-08 52.5 2.9 26 62-87 29-54 (224)
255 2cbz_A Multidrug resistance-as 96.3 0.002 6.9E-08 52.8 3.1 27 61-87 29-55 (237)
256 2wji_A Ferrous iron transport 96.3 0.0023 7.9E-08 48.6 3.2 23 63-85 3-25 (165)
257 3p32_A Probable GTPase RV1496/ 96.3 0.0027 9.4E-08 55.0 4.1 27 61-87 77-103 (355)
258 2og2_A Putative signal recogni 96.3 0.0028 9.6E-08 55.3 4.1 27 61-87 155-181 (359)
259 1oix_A RAS-related protein RAB 96.3 0.0024 8.3E-08 49.9 3.4 25 62-86 28-52 (191)
260 2hf9_A Probable hydrogenase ni 96.3 0.003 1E-07 50.4 3.9 26 62-87 37-62 (226)
261 2f9l_A RAB11B, member RAS onco 96.3 0.0027 9.1E-08 49.8 3.5 24 63-86 5-28 (199)
262 3ihw_A Centg3; RAS, centaurin, 96.3 0.0031 1.1E-07 48.9 3.9 26 61-86 18-43 (184)
263 3dm5_A SRP54, signal recogniti 96.3 0.0028 9.6E-08 56.9 4.0 26 62-87 99-124 (443)
264 3tkl_A RAS-related protein RAB 96.3 0.0028 9.7E-08 49.1 3.6 26 61-86 14-39 (196)
265 1nlf_A Regulatory protein REPA 96.3 0.0024 8.1E-08 53.3 3.3 26 61-86 28-53 (279)
266 2qm8_A GTPase/ATPase; G protei 96.3 0.0031 1.1E-07 54.4 4.1 27 61-87 53-79 (337)
267 2gj8_A MNME, tRNA modification 96.3 0.0027 9.1E-08 48.8 3.4 25 62-86 3-27 (172)
268 1u8z_A RAS-related protein RAL 96.3 0.0028 9.5E-08 47.4 3.4 25 62-86 3-27 (168)
269 2fn4_A P23, RAS-related protei 96.3 0.0031 1.1E-07 47.9 3.7 26 61-86 7-32 (181)
270 1sxj_B Activator 1 37 kDa subu 96.2 0.0026 9E-08 53.4 3.5 22 66-87 45-66 (323)
271 1nrj_B SR-beta, signal recogni 96.2 0.0031 1.1E-07 50.0 3.8 27 61-87 10-36 (218)
272 2bov_A RAla, RAS-related prote 96.2 0.0031 1.1E-07 49.3 3.7 26 61-86 12-37 (206)
273 1c1y_A RAS-related protein RAP 96.2 0.0029 9.8E-08 47.5 3.4 24 63-86 3-26 (167)
274 2ged_A SR-beta, signal recogni 96.2 0.0032 1.1E-07 48.7 3.8 26 61-86 46-71 (193)
275 1mv5_A LMRA, multidrug resista 96.2 0.0025 8.5E-08 52.4 3.2 27 61-87 26-52 (243)
276 2lkc_A Translation initiation 96.2 0.0032 1.1E-07 47.9 3.6 25 61-85 6-30 (178)
277 2nzj_A GTP-binding protein REM 96.2 0.0029 9.8E-08 47.9 3.4 24 62-85 3-26 (175)
278 1b0u_A Histidine permease; ABC 96.2 0.0024 8.1E-08 53.2 3.1 27 61-87 30-56 (262)
279 2erx_A GTP-binding protein DI- 96.2 0.0028 9.6E-08 47.7 3.2 24 62-85 2-25 (172)
280 1lw7_A Transcriptional regulat 96.2 0.0025 8.6E-08 55.4 3.3 28 63-90 170-197 (365)
281 2hxs_A RAB-26, RAS-related pro 96.2 0.0033 1.1E-07 47.8 3.6 24 62-85 5-28 (178)
282 3lxx_A GTPase IMAP family memb 96.2 0.0027 9.1E-08 51.6 3.2 25 61-85 27-51 (239)
283 1g16_A RAS-related protein SEC 96.2 0.0029 1E-07 47.6 3.3 23 63-85 3-25 (170)
284 3gfo_A Cobalt import ATP-bindi 96.2 0.0023 7.9E-08 53.8 2.9 27 61-87 32-58 (275)
285 1ky3_A GTP-binding protein YPT 96.2 0.0031 1.1E-07 48.0 3.4 26 61-86 6-31 (182)
286 1fzq_A ADP-ribosylation factor 96.2 0.0033 1.1E-07 48.5 3.6 27 60-86 13-39 (181)
287 3b85_A Phosphate starvation-in 96.2 0.0027 9.2E-08 51.1 3.1 25 62-86 21-45 (208)
288 1moz_A ARL1, ADP-ribosylation 96.2 0.0023 8E-08 49.0 2.7 24 61-84 16-39 (183)
289 2olj_A Amino acid ABC transpor 96.2 0.0026 8.9E-08 53.1 3.1 27 61-87 48-74 (263)
290 4g1u_C Hemin import ATP-bindin 96.2 0.0025 8.7E-08 53.2 3.0 26 61-86 35-60 (266)
291 4dsu_A GTPase KRAS, isoform 2B 96.2 0.0029 1E-07 48.5 3.1 25 62-86 3-27 (189)
292 2d2e_A SUFC protein; ABC-ATPas 96.2 0.0031 1.1E-07 52.1 3.5 26 61-86 27-52 (250)
293 2zu0_C Probable ATP-dependent 96.2 0.0032 1.1E-07 52.5 3.6 26 61-86 44-69 (267)
294 1yrb_A ATP(GTP)binding protein 96.2 0.006 2E-07 49.9 5.2 28 60-87 11-38 (262)
295 2yhs_A FTSY, cell division pro 96.2 0.0035 1.2E-07 57.0 4.1 27 61-87 291-317 (503)
296 2ixe_A Antigen peptide transpo 96.2 0.0027 9.3E-08 53.2 3.1 27 61-87 43-69 (271)
297 1ek0_A Protein (GTP-binding pr 96.2 0.0029 9.9E-08 47.5 3.0 24 63-86 3-26 (170)
298 3con_A GTPase NRAS; structural 96.1 0.003 1E-07 48.8 3.2 25 62-86 20-44 (190)
299 2ghi_A Transport protein; mult 96.1 0.0028 9.5E-08 52.7 3.1 27 61-87 44-70 (260)
300 1z08_A RAS-related protein RAB 96.1 0.0032 1.1E-07 47.4 3.2 25 62-86 5-29 (170)
301 2ff7_A Alpha-hemolysin translo 96.1 0.0027 9.1E-08 52.4 3.0 27 61-87 33-59 (247)
302 3clv_A RAB5 protein, putative; 96.1 0.0052 1.8E-07 47.4 4.5 26 61-86 5-30 (208)
303 3bc1_A RAS-related protein RAB 96.1 0.0036 1.2E-07 48.1 3.6 25 61-85 9-33 (195)
304 2www_A Methylmalonic aciduria 96.1 0.0038 1.3E-07 54.1 4.1 26 62-87 73-98 (349)
305 3oes_A GTPase rhebl1; small GT 96.1 0.0032 1.1E-07 49.4 3.3 26 61-86 22-47 (201)
306 2h17_A ADP-ribosylation factor 96.1 0.0029 9.8E-08 48.7 3.0 26 60-85 18-43 (181)
307 2ewv_A Twitching motility prot 96.1 0.0038 1.3E-07 54.7 4.0 27 61-87 134-160 (372)
308 1vpl_A ABC transporter, ATP-bi 96.1 0.0029 9.9E-08 52.6 3.1 27 61-87 39-65 (256)
309 1ji0_A ABC transporter; ATP bi 96.1 0.0028 9.6E-08 52.0 3.0 27 61-87 30-56 (240)
310 1z0j_A RAB-22, RAS-related pro 96.1 0.0031 1.1E-07 47.4 3.0 25 62-86 5-29 (170)
311 2b8t_A Thymidine kinase; deoxy 96.1 0.0043 1.5E-07 50.6 4.0 27 61-87 10-36 (223)
312 1g6h_A High-affinity branched- 96.1 0.0028 9.6E-08 52.6 3.0 27 61-87 31-57 (257)
313 3pxi_A Negative regulator of g 96.1 0.0033 1.1E-07 59.9 3.8 28 60-87 517-545 (758)
314 3q72_A GTP-binding protein RAD 96.1 0.0034 1.2E-07 47.1 3.2 22 63-84 2-23 (166)
315 2qen_A Walker-type ATPase; unk 96.1 0.0028 9.7E-08 53.7 3.0 32 64-95 32-63 (350)
316 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0033 1.1E-07 47.7 3.1 24 62-85 6-29 (177)
317 2pze_A Cystic fibrosis transme 96.1 0.003 1E-07 51.5 2.9 27 61-87 32-58 (229)
318 1zu4_A FTSY; GTPase, signal re 96.1 0.0043 1.5E-07 53.2 4.1 27 61-87 103-129 (320)
319 2onk_A Molybdate/tungstate ABC 96.1 0.0033 1.1E-07 51.7 3.2 24 64-87 25-48 (240)
320 3pqc_A Probable GTP-binding pr 96.1 0.0054 1.9E-07 47.2 4.3 26 61-86 21-46 (195)
321 2g6b_A RAS-related protein RAB 96.1 0.0041 1.4E-07 47.3 3.6 26 61-86 8-33 (180)
322 1pui_A ENGB, probable GTP-bind 96.1 0.002 6.9E-08 50.7 1.8 25 61-85 24-48 (210)
323 1sgw_A Putative ABC transporte 96.1 0.0026 8.8E-08 51.5 2.5 26 62-87 34-59 (214)
324 2y8e_A RAB-protein 6, GH09086P 96.1 0.0034 1.2E-07 47.6 3.0 24 62-85 13-36 (179)
325 3q85_A GTP-binding protein REM 96.1 0.0039 1.3E-07 46.9 3.4 22 64-85 3-24 (169)
326 1pzn_A RAD51, DNA repair and r 96.1 0.0036 1.2E-07 54.3 3.5 28 60-87 128-155 (349)
327 1zd9_A ADP-ribosylation factor 96.1 0.0038 1.3E-07 48.4 3.3 25 61-85 20-44 (188)
328 3tw8_B RAS-related protein RAB 96.1 0.0034 1.2E-07 47.7 3.0 25 61-85 7-31 (181)
329 2zej_A Dardarin, leucine-rich 96.1 0.003 1E-07 48.9 2.7 22 64-85 3-24 (184)
330 3rhf_A Putative polyphosphate 96.1 0.0062 2.1E-07 51.4 4.8 109 61-191 73-204 (289)
331 2yz2_A Putative ABC transporte 96.0 0.0034 1.1E-07 52.4 3.1 27 61-87 31-57 (266)
332 2oil_A CATX-8, RAS-related pro 96.0 0.0043 1.5E-07 48.1 3.6 26 61-86 23-48 (193)
333 1z06_A RAS-related protein RAB 96.0 0.004 1.4E-07 48.2 3.4 25 61-85 18-42 (189)
334 1r2q_A RAS-related protein RAB 96.0 0.0036 1.2E-07 46.9 3.0 24 62-85 5-28 (170)
335 1a5t_A Delta prime, HOLB; zinc 96.0 0.0047 1.6E-07 53.0 4.0 29 63-91 24-52 (334)
336 2qu8_A Putative nucleolar GTP- 96.0 0.005 1.7E-07 49.4 4.0 25 61-85 27-51 (228)
337 1ojl_A Transcriptional regulat 96.0 0.0033 1.1E-07 53.4 3.0 25 63-87 25-49 (304)
338 2a9k_A RAS-related protein RAL 96.0 0.0042 1.4E-07 47.4 3.4 25 62-86 17-41 (187)
339 3hr8_A Protein RECA; alpha and 96.0 0.0043 1.5E-07 54.1 3.8 28 60-87 58-85 (356)
340 2zts_A Putative uncharacterize 96.0 0.0041 1.4E-07 50.1 3.5 25 61-85 28-52 (251)
341 2qi9_C Vitamin B12 import ATP- 96.0 0.0034 1.2E-07 51.9 2.9 27 61-87 24-50 (249)
342 2gza_A Type IV secretion syste 96.0 0.0031 1E-07 55.0 2.8 27 62-88 174-200 (361)
343 1z0f_A RAB14, member RAS oncog 96.0 0.0042 1.4E-07 47.1 3.3 26 61-86 13-38 (179)
344 2ihy_A ABC transporter, ATP-bi 96.0 0.0034 1.2E-07 52.8 2.9 27 61-87 45-71 (279)
345 1svi_A GTP-binding protein YSX 96.0 0.0049 1.7E-07 47.7 3.6 26 61-86 21-46 (195)
346 2v3c_C SRP54, signal recogniti 96.0 0.0037 1.3E-07 55.9 3.2 26 62-87 98-123 (432)
347 3tqf_A HPR(Ser) kinase; transf 96.0 0.0044 1.5E-07 48.7 3.2 31 62-93 15-45 (181)
348 3kkq_A RAS-related protein M-R 96.0 0.0056 1.9E-07 46.9 3.8 26 61-86 16-41 (183)
349 3t1o_A Gliding protein MGLA; G 95.9 0.0047 1.6E-07 47.6 3.4 27 61-87 12-38 (198)
350 1m2o_B GTP-binding protein SAR 95.9 0.0045 1.5E-07 48.3 3.3 25 61-85 21-45 (190)
351 2efe_B Small GTP-binding prote 95.9 0.0044 1.5E-07 47.2 3.2 26 61-86 10-35 (181)
352 2atv_A RERG, RAS-like estrogen 95.9 0.0054 1.9E-07 47.8 3.7 26 61-86 26-51 (196)
353 1ksh_A ARF-like protein 2; sma 95.9 0.0049 1.7E-07 47.4 3.4 26 61-86 16-41 (186)
354 2bme_A RAB4A, RAS-related prot 95.9 0.0041 1.4E-07 47.7 3.0 25 62-86 9-33 (186)
355 3c5c_A RAS-like protein 12; GD 95.9 0.0048 1.6E-07 47.9 3.4 26 61-86 19-44 (187)
356 2xtp_A GTPase IMAP family memb 95.9 0.0048 1.6E-07 50.6 3.5 26 61-86 20-45 (260)
357 1r8s_A ADP-ribosylation factor 95.9 0.0054 1.8E-07 45.9 3.5 22 65-86 2-23 (164)
358 2p5s_A RAS and EF-hand domain 95.9 0.0054 1.9E-07 47.9 3.6 26 61-86 26-51 (199)
359 2b6h_A ADP-ribosylation factor 95.9 0.0056 1.9E-07 47.8 3.7 25 61-85 27-51 (192)
360 2nq2_C Hypothetical ABC transp 95.9 0.0039 1.3E-07 51.7 2.9 26 61-86 29-54 (253)
361 2a5j_A RAS-related protein RAB 95.9 0.0062 2.1E-07 47.2 3.9 26 61-86 19-44 (191)
362 3jvv_A Twitching mobility prot 95.9 0.0061 2.1E-07 53.1 4.2 26 62-87 122-147 (356)
363 3bwd_D RAC-like GTP-binding pr 95.9 0.0058 2E-07 46.6 3.6 26 61-86 6-31 (182)
364 2p67_A LAO/AO transport system 95.9 0.0058 2E-07 52.7 4.0 27 61-87 54-80 (341)
365 1zj6_A ADP-ribosylation factor 95.9 0.0058 2E-07 47.1 3.6 25 61-85 14-38 (187)
366 1qvr_A CLPB protein; coiled co 95.9 0.0028 9.7E-08 61.2 2.2 25 63-87 191-215 (854)
367 3fvq_A Fe(3+) IONS import ATP- 95.9 0.0049 1.7E-07 53.8 3.5 26 61-86 28-53 (359)
368 4bas_A ADP-ribosylation factor 95.8 0.0049 1.7E-07 47.8 3.1 26 60-85 14-39 (199)
369 1mh1_A RAC1; GTP-binding, GTPa 95.8 0.0049 1.7E-07 47.1 3.0 24 62-85 4-27 (186)
370 2gf0_A GTP-binding protein DI- 95.8 0.0066 2.3E-07 47.0 3.8 24 62-85 7-30 (199)
371 1v5w_A DMC1, meiotic recombina 95.8 0.0066 2.3E-07 52.4 4.1 27 60-86 119-145 (343)
372 3t5g_A GTP-binding protein RHE 95.8 0.0044 1.5E-07 47.4 2.7 24 62-85 5-28 (181)
373 1vg8_A RAS-related protein RAB 95.8 0.0057 1.9E-07 47.8 3.4 26 61-86 6-31 (207)
374 2yyz_A Sugar ABC transporter, 95.8 0.0057 1.9E-07 53.4 3.6 26 61-86 27-52 (359)
375 3rlf_A Maltose/maltodextrin im 95.8 0.0058 2E-07 53.7 3.6 27 61-87 27-53 (381)
376 2it1_A 362AA long hypothetical 95.8 0.006 2.1E-07 53.3 3.6 26 61-86 27-52 (362)
377 2iwr_A Centaurin gamma 1; ANK 95.8 0.0045 1.5E-07 47.2 2.5 25 62-86 6-30 (178)
378 2zr9_A Protein RECA, recombina 95.7 0.0062 2.1E-07 52.9 3.6 35 61-95 59-98 (349)
379 2fg5_A RAB-22B, RAS-related pr 95.7 0.0055 1.9E-07 47.6 3.0 26 61-86 21-46 (192)
380 2cxx_A Probable GTP-binding pr 95.7 0.0055 1.9E-07 47.0 3.0 23 64-86 2-24 (190)
381 2gco_A H9, RHO-related GTP-bin 95.7 0.0073 2.5E-07 47.3 3.8 26 61-86 23-48 (201)
382 3llu_A RAS-related GTP-binding 95.7 0.0047 1.6E-07 48.3 2.6 28 60-87 17-44 (196)
383 1f6b_A SAR1; gtpases, N-termin 95.7 0.0065 2.2E-07 47.7 3.4 25 61-85 23-47 (198)
384 2gf9_A RAS-related protein RAB 95.7 0.0079 2.7E-07 46.4 3.9 26 61-86 20-45 (189)
385 3reg_A RHO-like small GTPase; 95.7 0.006 2E-07 47.4 3.2 26 61-86 21-46 (194)
386 2j37_W Signal recognition part 95.7 0.0067 2.3E-07 55.3 3.9 27 61-87 99-125 (504)
387 3cph_A RAS-related protein SEC 95.7 0.0071 2.4E-07 47.4 3.6 25 61-85 18-42 (213)
388 3sop_A Neuronal-specific septi 95.7 0.0064 2.2E-07 50.8 3.5 24 64-87 3-26 (270)
389 2fh5_B SR-beta, signal recogni 95.7 0.0064 2.2E-07 48.0 3.4 25 62-86 6-30 (214)
390 1p9r_A General secretion pathw 95.7 0.0079 2.7E-07 53.5 4.3 27 62-88 166-192 (418)
391 2ew1_A RAS-related protein RAB 95.7 0.0063 2.1E-07 48.1 3.3 26 61-86 24-49 (201)
392 3dz8_A RAS-related protein RAB 95.7 0.007 2.4E-07 46.9 3.5 26 62-87 22-47 (191)
393 1v43_A Sugar-binding transport 95.7 0.0064 2.2E-07 53.3 3.6 27 61-87 35-61 (372)
394 2r8r_A Sensor protein; KDPD, P 95.7 0.009 3.1E-07 48.8 4.2 25 63-87 6-30 (228)
395 2bbs_A Cystic fibrosis transme 95.7 0.0054 1.8E-07 51.9 3.0 27 61-87 62-88 (290)
396 3k53_A Ferrous iron transport 95.7 0.0064 2.2E-07 50.4 3.4 24 63-86 3-26 (271)
397 1z47_A CYSA, putative ABC-tran 95.7 0.0064 2.2E-07 53.0 3.5 26 61-86 39-64 (355)
398 1qvr_A CLPB protein; coiled co 95.7 0.0042 1.4E-07 60.1 2.5 24 64-87 589-612 (854)
399 3lda_A DNA repair protein RAD5 95.7 0.0059 2E-07 54.0 3.3 25 60-84 175-199 (400)
400 1xx6_A Thymidine kinase; NESG, 95.7 0.0089 3.1E-07 47.4 4.1 27 61-87 6-32 (191)
401 2npi_A Protein CLP1; CLP1-PCF1 95.7 0.0053 1.8E-07 55.3 3.0 26 62-87 137-162 (460)
402 3tui_C Methionine import ATP-b 95.7 0.0067 2.3E-07 53.1 3.6 27 61-87 52-78 (366)
403 2il1_A RAB12; G-protein, GDP, 95.7 0.0062 2.1E-07 47.4 3.1 24 62-85 25-48 (192)
404 2q3h_A RAS homolog gene family 95.7 0.0073 2.5E-07 47.1 3.5 25 61-85 18-42 (201)
405 3k1j_A LON protease, ATP-depen 95.7 0.0056 1.9E-07 56.9 3.2 27 63-89 60-86 (604)
406 4gzl_A RAS-related C3 botulinu 95.7 0.0074 2.5E-07 47.5 3.5 25 61-85 28-52 (204)
407 3lxw_A GTPase IMAP family memb 95.6 0.0064 2.2E-07 49.9 3.2 25 61-85 19-43 (247)
408 1x3s_A RAS-related protein RAB 95.6 0.0063 2.1E-07 46.9 3.0 25 62-86 14-38 (195)
409 1ls1_A Signal recognition part 95.6 0.0085 2.9E-07 50.7 4.0 26 62-87 97-122 (295)
410 1gwn_A RHO-related GTP-binding 95.6 0.0069 2.4E-07 47.9 3.3 26 61-86 26-51 (205)
411 2pjz_A Hypothetical protein ST 95.6 0.006 2E-07 50.9 2.9 24 63-86 30-53 (263)
412 3nh6_A ATP-binding cassette SU 95.6 0.0039 1.3E-07 53.2 1.7 27 61-87 78-104 (306)
413 1j8m_F SRP54, signal recogniti 95.6 0.008 2.7E-07 51.0 3.7 26 62-87 97-122 (297)
414 2j1l_A RHO-related GTP-binding 95.6 0.0073 2.5E-07 47.9 3.2 25 61-85 32-56 (214)
415 1g29_1 MALK, maltose transport 95.6 0.0073 2.5E-07 52.9 3.5 25 62-86 28-52 (372)
416 2h57_A ADP-ribosylation factor 95.6 0.006 2.1E-07 47.2 2.6 27 61-87 19-45 (190)
417 2o52_A RAS-related protein RAB 95.6 0.0066 2.3E-07 47.6 2.9 25 61-85 23-47 (200)
418 2z43_A DNA repair and recombin 95.5 0.0073 2.5E-07 51.6 3.3 27 61-87 105-131 (324)
419 3d31_A Sulfate/molybdate ABC t 95.5 0.0051 1.7E-07 53.5 2.3 26 61-86 24-49 (348)
420 2bcg_Y Protein YP2, GTP-bindin 95.5 0.0072 2.5E-07 47.4 3.0 24 62-85 7-30 (206)
421 3bh0_A DNAB-like replicative h 95.5 0.0084 2.9E-07 51.1 3.6 27 61-87 66-92 (315)
422 2atx_A Small GTP binding prote 95.5 0.007 2.4E-07 46.9 2.8 25 62-86 17-41 (194)
423 1u94_A RECA protein, recombina 95.5 0.0089 3E-07 52.1 3.8 34 61-94 61-99 (356)
424 1zcb_A G alpha I/13; GTP-bindi 95.5 0.0083 2.9E-07 52.3 3.6 27 61-87 31-57 (362)
425 2i1q_A DNA repair and recombin 95.5 0.0082 2.8E-07 51.0 3.5 26 61-86 96-121 (322)
426 1zbd_A Rabphilin-3A; G protein 95.5 0.0087 3E-07 46.7 3.4 25 62-86 7-31 (203)
427 1r6b_X CLPA protein; AAA+, N-t 95.5 0.0083 2.8E-07 57.0 3.8 26 62-87 206-231 (758)
428 3cbq_A GTP-binding protein REM 95.5 0.0064 2.2E-07 47.7 2.5 23 62-84 22-44 (195)
429 2pt7_A CAG-ALFA; ATPase, prote 95.5 0.0053 1.8E-07 52.9 2.2 27 62-88 170-196 (330)
430 2g3y_A GTP-binding protein GEM 95.5 0.0087 3E-07 48.0 3.4 24 62-85 36-59 (211)
431 2xxa_A Signal recognition part 95.5 0.01 3.5E-07 53.1 4.1 27 61-87 98-124 (433)
432 3gd7_A Fusion complex of cysti 95.5 0.0084 2.9E-07 52.9 3.5 26 61-86 45-70 (390)
433 2rcn_A Probable GTPase ENGC; Y 95.5 0.0085 2.9E-07 52.3 3.4 25 62-86 214-238 (358)
434 2x77_A ADP-ribosylation factor 95.4 0.007 2.4E-07 46.7 2.5 24 61-84 20-43 (189)
435 1w5s_A Origin recognition comp 95.4 0.008 2.8E-07 52.2 3.2 26 62-87 49-76 (412)
436 3q3j_B RHO-related GTP-binding 95.4 0.011 3.7E-07 47.1 3.6 26 61-86 25-50 (214)
437 3tvt_A Disks large 1 tumor sup 95.4 0.1 3.4E-06 44.1 9.8 115 62-187 99-231 (292)
438 2hup_A RAS-related protein RAB 95.4 0.0087 3E-07 47.0 3.0 25 61-85 27-51 (201)
439 2fna_A Conserved hypothetical 95.4 0.011 3.6E-07 50.1 3.7 25 64-88 31-55 (357)
440 3a1s_A Iron(II) transport prot 95.3 0.0087 3E-07 49.5 3.0 25 61-85 3-27 (258)
441 2cjw_A GTP-binding protein GEM 95.3 0.011 3.7E-07 46.2 3.4 25 62-86 5-29 (192)
442 3kta_A Chromosome segregation 95.3 0.012 4E-07 45.4 3.5 24 65-88 28-51 (182)
443 2fu5_C RAS-related protein RAB 95.3 0.0053 1.8E-07 47.0 1.6 24 62-85 7-30 (183)
444 3f9v_A Minichromosome maintena 95.3 0.0037 1.3E-07 58.1 0.7 27 64-90 328-354 (595)
445 2f7s_A C25KG, RAS-related prot 95.3 0.009 3.1E-07 47.2 2.9 25 61-85 23-47 (217)
446 2fv8_A H6, RHO-related GTP-bin 95.3 0.011 3.7E-07 46.5 3.4 24 62-85 24-47 (207)
447 2yv5_A YJEQ protein; hydrolase 95.3 0.011 3.6E-07 50.2 3.5 25 62-87 164-188 (302)
448 2oap_1 GSPE-2, type II secreti 95.3 0.0076 2.6E-07 55.0 2.7 26 62-87 259-284 (511)
449 1oxx_K GLCV, glucose, ABC tran 95.3 0.0054 1.8E-07 53.4 1.6 26 61-86 29-54 (353)
450 2r6a_A DNAB helicase, replicat 95.3 0.012 4.2E-07 52.6 4.0 26 61-86 201-226 (454)
451 2j0v_A RAC-like GTP-binding pr 95.3 0.012 3.9E-07 46.4 3.4 25 62-86 8-32 (212)
452 3b1v_A Ferrous iron uptake tra 95.2 0.013 4.3E-07 49.0 3.5 25 62-86 2-26 (272)
453 3gj0_A GTP-binding nuclear pro 95.2 0.012 4.3E-07 46.6 3.3 28 60-87 12-40 (221)
454 1nij_A Hypothetical protein YJ 95.1 0.011 3.9E-07 50.3 3.2 25 62-86 3-27 (318)
455 2ffh_A Protein (FFH); SRP54, s 95.1 0.015 5.1E-07 51.8 4.0 26 62-87 97-122 (425)
456 1ega_A Protein (GTP-binding pr 95.1 0.01 3.6E-07 50.2 2.8 24 62-85 7-30 (301)
457 3cpj_B GTP-binding protein YPT 95.1 0.014 4.7E-07 46.6 3.3 25 61-85 11-35 (223)
458 2qag_B Septin-6, protein NEDD5 95.0 0.013 4.4E-07 52.3 3.4 25 62-86 39-65 (427)
459 3ozx_A RNAse L inhibitor; ATP 95.0 0.014 4.9E-07 53.5 3.7 30 58-87 20-49 (538)
460 1tq4_A IIGP1, interferon-induc 94.9 0.015 5E-07 51.7 3.5 24 62-85 68-91 (413)
461 1u0l_A Probable GTPase ENGC; p 94.9 0.015 5E-07 49.2 3.3 24 62-85 168-191 (301)
462 3upu_A ATP-dependent DNA helic 94.9 0.015 5.3E-07 52.0 3.6 23 65-87 47-69 (459)
463 1xp8_A RECA protein, recombina 94.9 0.017 5.8E-07 50.5 3.6 35 61-95 72-111 (366)
464 4dhe_A Probable GTP-binding pr 94.9 0.0087 3E-07 47.4 1.6 26 61-86 27-52 (223)
465 1ni3_A YCHF GTPase, YCHF GTP-b 94.9 0.017 5.8E-07 50.9 3.6 25 61-85 18-42 (392)
466 1tf7_A KAIC; homohexamer, hexa 94.9 0.015 5E-07 53.1 3.3 23 61-83 37-59 (525)
467 3e1s_A Exodeoxyribonuclease V, 94.9 0.017 5.9E-07 53.4 3.8 25 63-87 204-228 (574)
468 3iby_A Ferrous iron transport 94.8 0.015 5.3E-07 48.0 3.1 23 64-86 2-24 (256)
469 4dkx_A RAS-related protein RAB 94.8 0.02 6.8E-07 46.1 3.6 25 61-85 11-35 (216)
470 3io5_A Recombination and repai 94.8 0.017 6E-07 49.6 3.4 24 62-86 28-51 (333)
471 2q6t_A DNAB replication FORK h 94.8 0.019 6.6E-07 51.2 3.8 26 61-86 198-223 (444)
472 3th5_A RAS-related C3 botulinu 93.8 0.005 1.7E-07 48.3 0.0 25 61-85 28-52 (204)
473 2obl_A ESCN; ATPase, hydrolase 94.8 0.018 6.1E-07 49.9 3.5 28 61-88 69-96 (347)
474 3i8s_A Ferrous iron transport 94.8 0.018 6.3E-07 47.9 3.5 25 62-86 2-26 (274)
475 2yc2_C IFT27, small RAB-relate 94.8 0.0062 2.1E-07 47.4 0.5 25 62-86 19-43 (208)
476 2dpy_A FLII, flagellum-specifi 94.7 0.019 6.5E-07 51.4 3.6 29 60-88 154-182 (438)
477 3iev_A GTP-binding protein ERA 94.7 0.017 5.9E-07 48.9 3.2 26 60-85 7-32 (308)
478 1yqt_A RNAse L inhibitor; ATP- 94.7 0.019 6.5E-07 52.7 3.6 28 60-87 44-71 (538)
479 2qnr_A Septin-2, protein NEDD5 94.7 0.017 5.7E-07 48.9 3.0 23 63-85 18-40 (301)
480 1tf7_A KAIC; homohexamer, hexa 94.7 0.018 6.2E-07 52.5 3.4 27 61-87 279-305 (525)
481 3b5x_A Lipid A export ATP-bind 94.7 0.018 6.3E-07 53.1 3.4 27 61-87 367-393 (582)
482 2xkx_A Disks large homolog 4; 94.6 0.29 1E-05 46.3 11.7 115 62-188 530-662 (721)
483 3r7w_A Gtpase1, GTP-binding pr 94.6 0.021 7E-07 48.4 3.4 25 62-86 2-26 (307)
484 3kfv_A Tight junction protein 94.6 0.12 4E-06 44.1 8.0 92 64-188 146-240 (308)
485 1t9h_A YLOQ, probable GTPase E 94.6 0.0069 2.4E-07 51.7 0.4 24 62-85 172-195 (307)
486 3b60_A Lipid A export ATP-bind 94.6 0.017 5.7E-07 53.4 2.9 27 61-87 367-393 (582)
487 2j9r_A Thymidine kinase; TK1, 94.6 0.031 1.1E-06 45.1 4.2 27 61-87 26-52 (214)
488 1mky_A Probable GTP-binding pr 94.5 0.024 8.1E-07 50.5 3.8 25 62-86 179-203 (439)
489 2gno_A DNA polymerase III, gam 94.5 0.021 7.2E-07 48.5 3.2 25 63-87 18-42 (305)
490 4djt_A GTP-binding nuclear pro 94.5 0.0087 3E-07 47.3 0.7 24 61-84 9-32 (218)
491 2yl4_A ATP-binding cassette SU 94.4 0.018 6.1E-07 53.4 2.8 26 62-87 369-394 (595)
492 4a1f_A DNAB helicase, replicat 94.4 0.028 9.6E-07 48.5 3.8 26 61-86 44-69 (338)
493 3j16_B RLI1P; ribosome recycli 94.4 0.025 8.6E-07 52.7 3.7 29 59-87 99-127 (608)
494 1ko7_A HPR kinase/phosphatase; 94.4 0.022 7.6E-07 48.7 3.1 30 63-93 144-173 (314)
495 3bgw_A DNAB-like replicative h 94.4 0.028 9.4E-07 50.3 3.8 34 61-94 195-233 (444)
496 2e87_A Hypothetical protein PH 94.3 0.026 8.9E-07 48.8 3.4 25 62-86 166-190 (357)
497 1jal_A YCHF protein; nucleotid 94.3 0.028 9.5E-07 49.1 3.6 23 63-85 2-24 (363)
498 3qf4_B Uncharacterized ABC tra 94.3 0.02 6.9E-07 53.1 2.9 27 61-87 379-405 (598)
499 2aka_B Dynamin-1; fusion prote 94.3 0.026 9E-07 46.9 3.3 25 62-86 25-49 (299)
500 1h65_A Chloroplast outer envel 94.2 0.028 9.5E-07 46.5 3.3 24 62-85 38-61 (270)
No 1
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=9.9e-39 Score=261.94 Aligned_cols=161 Identities=29% Similarity=0.438 Sum_probs=150.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|||||||+|+|+.|+++||++|||++|++|+++..++++|..++.++.+|.++||+++..++.+++.+ .
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~-----~ 75 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK-----H 75 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS-----S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc-----C
Confidence 57999999999999999999999999999999999999999999999999999999999999999999988865 4
Q ss_pred CeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCC--------CCCCcH
Q 026951 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF--------SAADAA 210 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~--------~~dd~~ 210 (230)
.+||+||||++..|++.|+.. ..+|.||+|+||++++.+|+.+|+.|+.||+.||..+.+| +.||++
T Consensus 76 ~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~ 155 (206)
T 3sr0_A 76 GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKP 155 (206)
T ss_dssp SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSH
T ss_pred CceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCH
Confidence 689999999999999988643 4689999999999999999999999999999999988766 468899
Q ss_pred HHHHHHHHHHHHhhhhhhc
Q 026951 211 SAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 211 ~~~~~rl~~y~~~~~~~i~ 229 (230)
+.+++|++.|++++.|+++
T Consensus 156 e~i~~Rl~~Y~~~t~pl~~ 174 (206)
T 3sr0_A 156 EVIKKRLEVYREQTAPLIE 174 (206)
T ss_dssp HHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999974
No 2
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=9.9e-37 Score=253.01 Aligned_cols=165 Identities=24% Similarity=0.442 Sum_probs=153.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
.+++.|+|+|||||||+|+.|+++||++||++++++++....++++|+.+++++.+|.++|++++..++.+++.+..+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~-- 85 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADC-- 85 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGG--
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCccc--
Confidence 467999999999999999999999999999999999999989999999999999999999999999999999987543
Q ss_pred CCeEEEeCccCCHHHHHHHhcc-CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCC---------------CC
Q 026951 143 ESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SA 206 (230)
Q Consensus 143 ~~~~IlDg~p~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~---------------~~ 206 (230)
..+|||||||++..|++.|.+. ..+|.||+|+||++++.+|+.+|+.|+.||+.||..+++| +.
T Consensus 86 ~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~ 165 (230)
T 3gmt_A 86 ANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRD 165 (230)
T ss_dssp TTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCG
T ss_pred CCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCC
Confidence 5699999999999999999765 4789999999999999999999999999999999988776 46
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhc
Q 026951 207 ADAASAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 207 dd~~~~~~~rl~~y~~~~~~~i~ 229 (230)
||+++.+++||+.|++++.|+++
T Consensus 166 DD~~e~i~~Rl~~y~~~t~pl~~ 188 (230)
T 3gmt_A 166 DDKEETVKKRLDVYEAQTKPLIT 188 (230)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999985
No 3
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=5.2e-35 Score=241.40 Aligned_cols=158 Identities=26% Similarity=0.385 Sum_probs=140.7
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 026951 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (230)
Q Consensus 59 ~~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~ 138 (230)
...++.+|+|+|||||||||+|+.|+++||++|||++|++|++...++++|+.+++++.+|.++||+++..++.+++.+.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~ 104 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKL 104 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cccCCCeEEEeCccCCHHHHHHHhc-cCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHH
Q 026951 139 YYRGESGFILDGIPRTRIQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (230)
Q Consensus 139 ~~~~~~~~IlDg~p~~~~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl 217 (230)
.+ ...+||+||||++..|++.|+. ...++.||+|+||++++.+|+.+|..+. .+.||+++.+++|+
T Consensus 105 ~~-~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~------------~R~DD~~e~i~~Rl 171 (217)
T 3umf_A 105 VD-KNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETS------------NRVDDNEETIVKRF 171 (217)
T ss_dssp TT-TCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------------------CHHHHHHHHHHH
T ss_pred cc-cccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccC------------CCCCCCHHHHHHHH
Confidence 32 3679999999999999999975 4678999999999999999999998643 26788999999999
Q ss_pred HHHHHhhhhhhc
Q 026951 218 RIYAEQINLTIS 229 (230)
Q Consensus 218 ~~y~~~~~~~i~ 229 (230)
+.|++++.|+++
T Consensus 172 ~~Y~~~t~pl~~ 183 (217)
T 3umf_A 172 RTFNELTKPVIE 183 (217)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.97 E-value=2.4e-31 Score=222.87 Aligned_cols=167 Identities=28% Similarity=0.413 Sum_probs=152.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~ 140 (230)
.++++|+|+|+|||||||+|+.|++++|++|+++++++++....+++.+..+.+++.+|..++++++..++..++....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~- 105 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ- 105 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc-
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999988887642
Q ss_pred cCCCeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCC----------
Q 026951 141 RGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS---------- 205 (230)
Q Consensus 141 ~~~~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~---------- 205 (230)
.+.+||+||||++..|+..|.+. ..+|.||+|++|++++.+|+.+|+.|+.||+.||..+.+|.
T Consensus 106 -~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 184 (243)
T 3tlx_A 106 -CKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184 (243)
T ss_dssp -GSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred -ccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccc
Confidence 36899999999999999987653 46899999999999999999999999999999999887763
Q ss_pred -----CCCcHHHHHHHHHHHHHhhhhhhc
Q 026951 206 -----AADAASAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 206 -----~dd~~~~~~~rl~~y~~~~~~~i~ 229 (230)
.||+++.+++|+..|++++.|+++
T Consensus 185 ~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~ 213 (243)
T 3tlx_A 185 PLIQREDDNEDVLKKRLTVFKSETSPLIS 213 (243)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHTTHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999998764
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.97 E-value=1e-29 Score=208.29 Aligned_cols=164 Identities=28% Similarity=0.433 Sum_probs=148.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|+|||||||+|+.|++++|++++++++++++....+++.+..+.+++..|..++++.+..++...+.... .+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~ 78 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDD--CE 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--cc
Confidence 3699999999999999999999999999999999999999999999999999999999999999999988887642 36
Q ss_pred CeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCC-------------
Q 026951 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS------------- 205 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~------------- 205 (230)
.++|+||||++..|+..+.+. ..+|.+|+|++|++++.+|+.+|+.|+.||+.||..+.+|.
T Consensus 79 ~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3dl0_A 79 RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELY 158 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCcccccccccc
Confidence 899999999999999887653 25899999999999999999999999999999999887663
Q ss_pred --CCCcHHHHHHHHHHHHHhhhhhhc
Q 026951 206 --AADAASAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 206 --~dd~~~~~~~rl~~y~~~~~~~i~ 229 (230)
.||+++.+++|++.|.+...|+++
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~~~~~ 184 (216)
T 3dl0_A 159 QRADDNEETVTKRLEVNMKQTAPLLD 184 (216)
T ss_dssp CCTTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999988753
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.96 E-value=3.4e-29 Score=205.01 Aligned_cols=164 Identities=27% Similarity=0.420 Sum_probs=147.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|+|||||||+|+.|++++|++++++++++++....+++.++.+.+++..|..++++++..++...+.... .+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~--~~ 78 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDD--CQ 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGG--GT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccc--CC
Confidence 4699999999999999999999999999999999999998899999999999999999999999999988887642 36
Q ss_pred CeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCC-------------
Q 026951 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS------------- 205 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~------------- 205 (230)
.+||+||||++..|+..+.+. ..+|.+|+|++|++++.+|+.+|+.|+.||+.||..+.+|.
T Consensus 79 ~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~ 158 (216)
T 3fb4_A 79 KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELY 158 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEE
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccc
Confidence 799999999999999887653 24899999999999999999999999999999999887663
Q ss_pred --CCCcHHHHHHHHHHHHHhhhhhhc
Q 026951 206 --AADAASAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 206 --~dd~~~~~~~rl~~y~~~~~~~i~ 229 (230)
.+|+++.+++|++.|.+...++++
T Consensus 159 ~r~~d~~e~i~~rl~~~~~~~~~~~~ 184 (216)
T 3fb4_A 159 QRIDDKPETVKNRLDVNMKQTQPLLD 184 (216)
T ss_dssp CCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 467899999999999999988653
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.96 E-value=1.8e-28 Score=201.65 Aligned_cols=165 Identities=22% Similarity=0.385 Sum_probs=143.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
++++|+|+|+|||||||+|+.|++.+|++++++|+++++....+++.++.+.+++.+|..++++...+++..++... .
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~ 81 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLG--V 81 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTT--T
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc--c
Confidence 56789999999999999999999999999999999999988888888999999999899999999999998888763 2
Q ss_pred CCCeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCC-----------
Q 026951 142 GESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS----------- 205 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~----------- 205 (230)
.+.+||+||||++..|++.+.++ ..||.+|+|++|++++.+|+.+|..++.||+.||..+.+|.
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 161 (217)
T 3be4_A 82 CVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEP 161 (217)
T ss_dssp TTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred cCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccc
Confidence 36789999999999888877632 36899999999999999999999999899999999876654
Q ss_pred ----CCCcHHHHHHHHHHHHHhhhhhh
Q 026951 206 ----AADAASAWKEKFRIYAEQINLTI 228 (230)
Q Consensus 206 ----~dd~~~~~~~rl~~y~~~~~~~i 228 (230)
.||..+.+++|+..|.+...|++
T Consensus 162 l~~~~dd~~e~v~~r~~~~~~~~~~l~ 188 (217)
T 3be4_A 162 LVWRDDDNAEAVKVRLDVFHKQTAPLV 188 (217)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHTTHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 24678899999999999988874
No 8
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.96 E-value=6.6e-28 Score=200.32 Aligned_cols=167 Identities=30% Similarity=0.442 Sum_probs=145.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~ 139 (230)
+.++++|+|+|+|||||||+|+.|++.+++.++++++++++....+++.++.+++++..|..++++.+..++..++....
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 92 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPP 92 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 34678899999999999999999999999999999999999877788899999999999999999999999988887642
Q ss_pred ccCCCeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCC---------
Q 026951 140 YRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS--------- 205 (230)
Q Consensus 140 ~~~~~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~--------- 205 (230)
.+.+||+||||++..|++.|.++ ..+|++|+|++|++++.+|+.+|..++.||+.||..+.++.
T Consensus 93 --~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~ 170 (233)
T 1ak2_A 93 --CKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITG 170 (233)
T ss_dssp --GTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTC
T ss_pred --ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccc
Confidence 35789999999999998876544 35899999999999999999999999999999998765543
Q ss_pred ------CCCcHHHHHHHHHHHHHhhhhhh
Q 026951 206 ------AADAASAWKEKFRIYAEQINLTI 228 (230)
Q Consensus 206 ------~dd~~~~~~~rl~~y~~~~~~~i 228 (230)
.||..+.+++|++.|.+...|++
T Consensus 171 ~~l~~r~d~~~~~~~~r~~~y~~~~~~~~ 199 (233)
T 1ak2_A 171 EPLIRRSDDNKKALKIRLEAYHTQTTPLV 199 (233)
T ss_dssp CBCEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999998877764
No 9
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.96 E-value=7.5e-28 Score=197.96 Aligned_cols=165 Identities=27% Similarity=0.412 Sum_probs=144.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-hccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE-EGYY 140 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~-~~~~ 140 (230)
++++|+|+|+|||||||+|+.|++.++++++++|+++++....+++.+..+.+++.+|..++++.+..++..++. ..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~-- 80 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNP-- 80 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCG--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcc--
Confidence 567899999999999999999999999999999999999888888999999999999999999999999988886 32
Q ss_pred cCCCeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCC----------
Q 026951 141 RGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS---------- 205 (230)
Q Consensus 141 ~~~~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~---------- 205 (230)
..+.+||+||||++..|+..|..+ ..+|++|+|++|++++.+|+.+|..++.||..||..+.+|.
T Consensus 81 ~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~ 160 (220)
T 1aky_A 81 ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGE 160 (220)
T ss_dssp GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccc
Confidence 235789999999999988766433 46899999999999999999999989999999998765553
Q ss_pred -----CCCcHHHHHHHHHHHHHhhhhhh
Q 026951 206 -----AADAASAWKEKFRIYAEQINLTI 228 (230)
Q Consensus 206 -----~dd~~~~~~~rl~~y~~~~~~~i 228 (230)
.||.++.+++|++.|.+...|++
T Consensus 161 ~l~~r~dd~~~~~~~rl~~~~~~~~~l~ 188 (220)
T 1aky_A 161 ALVQRSDDNADALKKRLAAYHAQTEPIV 188 (220)
T ss_dssp BCBCCTTCSHHHHHHHHHHHHHHTTHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999888764
No 10
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.95 E-value=6e-28 Score=197.87 Aligned_cols=164 Identities=25% Similarity=0.438 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|+|||||||+|+.|++.+|++++++++++++.+..+++.++.+++++.+|..++++.+..++..++.... .+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~--~~ 78 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED--CR 78 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG--GG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc--cC
Confidence 3699999999999999999999999999999999999877778888889999998999999999999988887642 24
Q ss_pred CeEEEeCccCCHHHHHHHhcc-CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCC---------------CCC
Q 026951 144 SGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SAA 207 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~---------------~~d 207 (230)
.+||+||||++..|+..|... ..+|++|+|++|++++.+|+.+|..++.||+.||..+.+| +.|
T Consensus 79 ~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~d 158 (214)
T 1e4v_A 79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKD 158 (214)
T ss_dssp GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTT
T ss_pred CCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCC
Confidence 689999999999998888654 4689999999999999999999998888999999876655 346
Q ss_pred CcHHHHHHHHHHHHHhhhhhhc
Q 026951 208 DAASAWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 208 d~~~~~~~rl~~y~~~~~~~i~ 229 (230)
|.++.+++|++.|.+.+.|+++
T Consensus 159 d~~~~~~~rl~~y~~~~~~l~~ 180 (214)
T 1e4v_A 159 DQEETVRKRLVEYHQMTAPLIG 180 (214)
T ss_dssp CSHHHHHHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999887753
No 11
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.95 E-value=3.4e-27 Score=194.98 Aligned_cols=163 Identities=20% Similarity=0.359 Sum_probs=142.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
++|+|+|+|||||||+|+.|++.+|++++++|+++++....+++.++.+++++.+|..++++.+..++...+... . +
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~--~-g 77 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESK--G-K 77 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH--C-T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcc--c-C
Confidence 469999999999999999999999999999999999988888889999999999999999999999998888763 2 5
Q ss_pred CeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCC-ccchhccCCCCCCC-----------
Q 026951 144 SGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSP-HKEFLRLGGARFSA----------- 206 (230)
Q Consensus 144 ~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~-~~~~~~~~~~~~~~----------- 206 (230)
.+||+||||++..|+..|.++ ..||++|+|++|++++.+|+.+|..++. ||+.||..+.+|..
T Consensus 78 ~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~ 157 (223)
T 2xb4_A 78 DGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGA 157 (223)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCB
T ss_pred CeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccc
Confidence 799999999999898887643 3689999999999999999999988777 99999998765532
Q ss_pred -----CCcHH-HHHHHHHHHHHhhhhhhc
Q 026951 207 -----ADAAS-AWKEKFRIYAEQINLTIS 229 (230)
Q Consensus 207 -----dd~~~-~~~~rl~~y~~~~~~~i~ 229 (230)
||.++ .+++|+..|.+.+.|+++
T Consensus 158 l~~r~dd~~e~~i~~rl~~~~~~~~p~~~ 186 (223)
T 2xb4_A 158 LSARADDQDEGAINKRHDIYYNTVDGTLA 186 (223)
T ss_dssp EECCGGGGCHHHHHHHHHHHTCTTTSHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHhHHHHHh
Confidence 34567 999999999998877754
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.94 E-value=1.3e-26 Score=191.58 Aligned_cols=165 Identities=24% Similarity=0.364 Sum_probs=142.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~ 140 (230)
.++++|+|+|+|||||||+|+.|++.+|++++++|++++.....+++.+..+.+++.+|..++++....++..++...
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-- 82 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-- 82 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC--
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc--
Confidence 366889999999999999999999999999999999999887778888999999999999999988888887777652
Q ss_pred cCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCC---------------
Q 026951 141 RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS--------------- 205 (230)
Q Consensus 141 ~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~--------------- 205 (230)
.+.+||+||+|++..|++.+..+..+|.+|+|++|++++.+|+.+|..++.||+.|+....+|.
T Consensus 83 -~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r 161 (227)
T 1zd8_A 83 -TQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQR 161 (227)
T ss_dssp -TTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred -cCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCC
Confidence 3578999999999999888887778899999999999999999999888878988887665542
Q ss_pred CCCcHHHHHHHHHHHHHhhhhhh
Q 026951 206 AADAASAWKEKFRIYAEQINLTI 228 (230)
Q Consensus 206 ~dd~~~~~~~rl~~y~~~~~~~i 228 (230)
.+|..+.+++|++.|.+.+.|++
T Consensus 162 ~~~~~e~~~~r~~~y~~~~~~l~ 184 (227)
T 1zd8_A 162 EDDKPETVIKRLKAYEDQTKPVL 184 (227)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999988765
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.94 E-value=3.9e-26 Score=187.93 Aligned_cols=167 Identities=23% Similarity=0.360 Sum_probs=142.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~ 140 (230)
.+++.|+|+|+|||||||+|+.|++.+++.++++|+++++....++..|..+.+++.+|..++++.+..++..++....+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence 36678999999999999999999999999999999999987777888999999999999999999888888777654221
Q ss_pred cCCCeEEEeCccCCHHHHHHHhcc-CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCC-----------CCC
Q 026951 141 RGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFS-----------AAD 208 (230)
Q Consensus 141 ~~~~~~IlDg~p~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~-----------~dd 208 (230)
...++|+||||++..|+..+... ..+|++|+|++|++++.+|+..|..++.||+.|+....+|. .+|
T Consensus 83 -~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d 161 (222)
T 1zak_A 83 -QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDD 161 (222)
T ss_dssp -HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTC
T ss_pred -cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCC
Confidence 24689999999999888888754 36899999999999999999999988889999988765542 356
Q ss_pred cHHHHHHHHHHHHHhhhhhh
Q 026951 209 AASAWKEKFRIYAEQINLTI 228 (230)
Q Consensus 209 ~~~~~~~rl~~y~~~~~~~i 228 (230)
..+.+++|++.|..+..|++
T Consensus 162 ~~~~i~~Rl~~~~~~~~~l~ 181 (222)
T 1zak_A 162 TEEKVKLRLETYYQNIESLL 181 (222)
T ss_dssp CTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 67889999999998777754
No 14
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.91 E-value=1.1e-23 Score=170.53 Aligned_cols=151 Identities=30% Similarity=0.514 Sum_probs=127.0
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 026951 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (230)
Q Consensus 59 ~~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~ 138 (230)
.+.++++|+|+|+|||||||+|+.|++.+|++++++|+++++....++..+..+.+++.+|..++++....++..++...
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 95 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP 95 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc
Confidence 44578899999999999999999999999999999999999877778888999999999999999988888887776543
Q ss_pred cccCCCeEEEeCccCCHHHHHHHhcc-----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHH
Q 026951 139 YYRGESGFILDGIPRTRIQAEILDQI-----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAW 213 (230)
Q Consensus 139 ~~~~~~~~IlDg~p~~~~qa~~l~~~-----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~ 213 (230)
..+.+||+||+|++..|++.+..+ ..+|.+|+|++|++++.+|+.+|.. .+++++.+
T Consensus 96 --~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r----------------~~~~~e~~ 157 (201)
T 2cdn_A 96 --DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGR----------------ADDTDDVI 157 (201)
T ss_dssp --GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCC----------------TTCSHHHH
T ss_pred --cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCC----------------CCCCHHHH
Confidence 235789999999999888776543 2479999999999999999998842 23567889
Q ss_pred HHHHHHHHHhhhhh
Q 026951 214 KEKFRIYAEQINLT 227 (230)
Q Consensus 214 ~~rl~~y~~~~~~~ 227 (230)
++|++.|.+...|+
T Consensus 158 ~~r~~~~~~~~~~~ 171 (201)
T 2cdn_A 158 LNRMKVYRDETAPL 171 (201)
T ss_dssp HHHHHHHHHHTTTH
T ss_pred HHHHHHHHHhhHHH
Confidence 99999998776554
No 15
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.90 E-value=9.5e-23 Score=163.57 Aligned_cols=153 Identities=23% Similarity=0.389 Sum_probs=127.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
++..|+|+|+|||||||+|+.|++.+|++++++|++++.....++..++.+.+++.+|..++++....++...+.... .
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~ 86 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKV-N 86 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcc-c
Confidence 667899999999999999999999999999999999998877778899999999999999999888888877776432 2
Q ss_pred CCCeEEEeCccCCHHHHHHHhc-cCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHHH
Q 026951 142 GESGFILDGIPRTRIQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY 220 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~y 220 (230)
.+.++|+||+|++..+...+.. +..++.+|+|++|++++.+|+.+|.... .+.++.++.+.+|++.|
T Consensus 87 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~------------~~~~~~~~~~~~r~~~~ 154 (196)
T 2c95_A 87 TSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETS------------GRVDDNEETIKKRLETY 154 (196)
T ss_dssp TCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSS------------SCGGGSHHHHHHHHHHH
T ss_pred cCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcC------------CCCCCCHHHHHHHHHHH
Confidence 3678999999999988877754 3578999999999999999999885321 13345677888888888
Q ss_pred HHhhhhh
Q 026951 221 AEQINLT 227 (230)
Q Consensus 221 ~~~~~~~ 227 (230)
.+...|+
T Consensus 155 ~~~~~~~ 161 (196)
T 2c95_A 155 YKATEPV 161 (196)
T ss_dssp HHHTHHH
T ss_pred HHHHHHH
Confidence 7776654
No 16
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.90 E-value=8.3e-23 Score=165.38 Aligned_cols=155 Identities=26% Similarity=0.417 Sum_probs=125.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHc-CCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~-~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~ 139 (230)
.++..|+|+|+|||||||+|+.|++.+|++++++|+++++.. ..++..++.+++++.+|...+++....++...+....
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~l 92 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNV 92 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhh
Confidence 467889999999999999999999999999999999999864 3567788889999989999998888887776665432
Q ss_pred ccCCCeEEEeCccCCHHHHHHHhcc-CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHH
Q 026951 140 YRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFR 218 (230)
Q Consensus 140 ~~~~~~~IlDg~p~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~ 218 (230)
..++.+||+||+|++..++..|... ..+|++|+|++|++++.+|+.+|.... ...+|..+.+++|+.
T Consensus 93 ~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~------------~~~~~~~e~~~~r~~ 160 (203)
T 1ukz_A 93 KANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTS------------GRSDDNIESIKKRFN 160 (203)
T ss_dssp HTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHH------------CCTTCSHHHHHHHHH
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccC------------CCCCCCHHHHHHHHH
Confidence 2334689999999999998887654 458999999999999999999885310 123466788889988
Q ss_pred HHHHhhhhh
Q 026951 219 IYAEQINLT 227 (230)
Q Consensus 219 ~y~~~~~~~ 227 (230)
.|.+...|+
T Consensus 161 ~~~~~~~~~ 169 (203)
T 1ukz_A 161 TFKETSMPV 169 (203)
T ss_dssp HHHHTTHHH
T ss_pred HHHHhhHHH
Confidence 888766554
No 17
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=163.15 Aligned_cols=153 Identities=26% Similarity=0.416 Sum_probs=125.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
++.+|+|+|+|||||||+|+.|++.+|++++++|++++.....+++.+..+.+++.+|..++++....++...+.... .
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~-~ 89 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASL-G 89 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT-T
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccc-c
Confidence 467899999999999999999999999999999999998876677889999999999999999988888877765532 2
Q ss_pred CCCeEEEeCccCCHHHHHHHhcc-CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHHHHH
Q 026951 142 GESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKFRIY 220 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl~~y 220 (230)
.+.++|+||+|.+..++..|... ..+|++|+|++|++++.+|+.+|.... .+.++..+.+.+|+..|
T Consensus 90 ~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~------------~~~~~~~~~~~~r~~~~ 157 (199)
T 2bwj_A 90 DTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSS------------LPVDDTTKTIAKRLEAY 157 (199)
T ss_dssp SCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCC------------SCHHHHHHHHHHHHHHH
T ss_pred cCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCC------------CCCCCCHHHHHHHHHHH
Confidence 36789999999999988777543 478999999999999999999986421 12334567888888887
Q ss_pred HHhhhhh
Q 026951 221 AEQINLT 227 (230)
Q Consensus 221 ~~~~~~~ 227 (230)
.....|+
T Consensus 158 ~~~~~~~ 164 (199)
T 2bwj_A 158 YRASIPV 164 (199)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766553
No 18
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.89 E-value=2.8e-22 Score=160.07 Aligned_cols=151 Identities=26% Similarity=0.399 Sum_probs=125.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
++..|+|+|+|||||||+|+.|++.+|++++++|+++++....+++.+..+.+++.+|...+++....++...+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--- 81 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--- 81 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS---
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc---
Confidence 56789999999999999999999999999999999999887677888999999999999999988888888777652
Q ss_pred CCCeEEEeCccCCHHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHH
Q 026951 142 GESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl 217 (230)
.+.++|+||+|++..+...+... ..+|++|+|++|++++.+|+.+|.... .+.++..+.+.+|+
T Consensus 82 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~------------~r~~~~~~~~~~ri 149 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESS------------GRSDDNIESIKKRF 149 (194)
T ss_dssp TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTS------------CCTTCSHHHHHHHH
T ss_pred CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccC------------CCCCCCHHHHHHHH
Confidence 46789999999999888777432 258899999999999999999885311 13456678889998
Q ss_pred HHHHHhhhhh
Q 026951 218 RIYAEQINLT 227 (230)
Q Consensus 218 ~~y~~~~~~~ 227 (230)
+.|.+...|+
T Consensus 150 ~~~~~~~~~~ 159 (194)
T 1qf9_A 150 NTFNVQTKLV 159 (194)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHhHHHH
Confidence 8877655543
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.89 E-value=1.5e-22 Score=161.47 Aligned_cols=147 Identities=27% Similarity=0.474 Sum_probs=119.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
++..|+|+|+|||||||+|+.|++.+|++++++|+++++.+..+++.+..+.+++.+|..++++....++...+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----- 77 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----- 77 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-----
Confidence 567899999999999999999999999999999999998877788889999999999999999887777665443
Q ss_pred CCCeEEEeCccCCHHHHHHHhcc----C-CcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHH
Q 026951 142 GESGFILDGIPRTRIQAEILDQI----V-DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEK 216 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~----~-~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~r 216 (230)
.++|+||+|++..|...+..+ . .+|.+|+|++|++++.+|+.+|... .+ +.++.++.+++|
T Consensus 78 --~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~--~~----------r~~~~~~~~~~r 143 (186)
T 3cm0_A 78 --ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAEL--EG----------RSDDNEETVRRR 143 (186)
T ss_dssp --SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHH--HT----------CSSCCHHHHHHH
T ss_pred --CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcccc--CC----------CCCCCHHHHHHH
Confidence 249999999998887665432 1 3789999999999999999987410 00 234567888999
Q ss_pred HHHHHHhhhhh
Q 026951 217 FRIYAEQINLT 227 (230)
Q Consensus 217 l~~y~~~~~~~ 227 (230)
++.|.+...|+
T Consensus 144 ~~~~~~~~~~l 154 (186)
T 3cm0_A 144 LEVYREKTEPL 154 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888765553
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.88 E-value=5.6e-22 Score=158.54 Aligned_cols=155 Identities=23% Similarity=0.420 Sum_probs=122.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcC-CCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc-
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY- 139 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~-~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~- 139 (230)
++..|+|+|+|||||||+|+.|++.+|++++++|+++++... .++..++.+.+++.+|...++++...++...+....
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 467899999999999999999999999999999999988754 456678888898989999998887777765554321
Q ss_pred -ccCCCeEEEeCccCCHHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHH
Q 026951 140 -YRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWK 214 (230)
Q Consensus 140 -~~~~~~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~ 214 (230)
...+..||+||+|++..+...+... ..+|.+|+|++|++++.+|+.+|.... .+.++..+.++
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~------------~r~~~~~~~~~ 149 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSS------------GRSDDNRESLE 149 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTS------------SCCSCCHHHHH
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccC------------CCCCCCHHHHH
Confidence 1236789999999998877655432 257899999999999999999885311 13455678889
Q ss_pred HHHHHHHHhhhhhh
Q 026951 215 EKFRIYAEQINLTI 228 (230)
Q Consensus 215 ~rl~~y~~~~~~~i 228 (230)
+|+..|.+...|++
T Consensus 150 ~~~~~~~~~~~~~~ 163 (196)
T 1tev_A 150 KRIQTYLQSTKPII 163 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHH
Confidence 99999988877653
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.84 E-value=1.1e-19 Score=151.61 Aligned_cols=164 Identities=26% Similarity=0.387 Sum_probs=131.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
++.+|+|+|+|||||||+++.|++++|+.+++.+++++.........+..+..++.++..+++.++.+.+...+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~--- 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR--- 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc---
Confidence 56789999999999999999999999999999999998765555667888888888888899888887777666542
Q ss_pred CCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCC---------------CC
Q 026951 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARF---------------SA 206 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~---------------~~ 206 (230)
.+.++++||+|++..+++.+.....++++|+|++|++++.+|+.+|..+..+|+.+.....+| ..
T Consensus 103 ~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld 182 (246)
T 2bbw_A 103 RGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQE 182 (246)
T ss_dssp TTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCG
T ss_pred CCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCC
Confidence 356899999999987777776666789999999999999999999987776776543311111 12
Q ss_pred CCcHHHHHHHHHHHHHhhhhhh
Q 026951 207 ADAASAWKEKFRIYAEQINLTI 228 (230)
Q Consensus 207 dd~~~~~~~rl~~y~~~~~~~i 228 (230)
+++.+.+.+++..|.+...+++
T Consensus 183 ~~~~~~i~~~l~~~~~~~~~v~ 204 (246)
T 2bbw_A 183 DDKPEAVAARLRQYKDVAKPVI 204 (246)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhHHHHH
Confidence 4467889999999988877764
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.71 E-value=9.6e-17 Score=125.32 Aligned_cols=118 Identities=21% Similarity=0.231 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCC----ChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPR----SALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~----~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~ 139 (230)
+.|+|+|+|||||||+|+.| +.+|++++++++++++..... .........+... .+++.+..++...+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-- 75 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGT-- 75 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCS--
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHh--
Confidence 57999999999999999999 999999999999999865421 1223333333221 1123445555555532
Q ss_pred ccCCCeEEEeCccCCHHHHHHHhcc-CCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 140 YRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 140 ~~~~~~~IlDg~p~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
..+..+|+||+ .+..+...+.++ ..++.+|+|++|++++.+|+..|..
T Consensus 76 -~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 124 (179)
T 3lw7_A 76 -SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLR 124 (179)
T ss_dssp -CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC-
T ss_pred -cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccC
Confidence 23678999999 889998888765 4678999999999999999999864
No 23
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.68 E-value=8.6e-17 Score=126.77 Aligned_cols=136 Identities=16% Similarity=0.123 Sum_probs=92.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH-HhCCCccchhHHHHHHcCCCCh-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSK-LLEVPHISMGSLVRQELSPRSA-----LYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~-~~~~~~is~~dll~~~~~~~~~-----~~~~i~~~l~~g~~v~de~~~~ll~~~l~ 136 (230)
+..|+|+|+|||||||+|+.|++ .+++.+++.+.+ ++....... ....-.. ...+.+..++...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~-r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY-RQSIMAHEERDEYKYTKKKEG-------IVTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH-HHHHTTSCCGGGCCCCHHHHH-------HHHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHH-HHHhhCCCccchhhhchhhhh-------HHHHHHHHHHHHHHh
Confidence 56899999999999999999999 689999998654 443322110 1000000 011233344444442
Q ss_pred hccccCCCeEEEeCccCCHHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHH
Q 026951 137 EGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASA 212 (230)
Q Consensus 137 ~~~~~~~~~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~ 212 (230)
.. ..+.++|+|+++.+..+...+.+. ..+..+|+|++|.+++.+|+.+|..+. ..++.
T Consensus 74 ~~--~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~----------------~~~~~ 135 (181)
T 1ly1_A 74 GG--DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKA----------------VPIDV 135 (181)
T ss_dssp SC--SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGC----------------CCHHH
T ss_pred hc--cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCC----------------CCHHH
Confidence 11 236899999999988777666532 345579999999999999999986422 34678
Q ss_pred HHHHHHHHHHhh
Q 026951 213 WKEKFRIYAEQI 224 (230)
Q Consensus 213 ~~~rl~~y~~~~ 224 (230)
++++++.|.+..
T Consensus 136 i~~~~~~~~~~~ 147 (181)
T 1ly1_A 136 LRSMYKSMREYL 147 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhccC
Confidence 888888887763
No 24
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.63 E-value=8.2e-15 Score=116.65 Aligned_cols=114 Identities=16% Similarity=0.085 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHH-----------HH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI-----------FA 129 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~---~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~-----------~~ 129 (230)
+.|+|+|+|||||||+|+.|++.+ |++++++++ ..++..++.+.+++.+|.+.++... ..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999998 999998862 2345677788888877765554322 11
Q ss_pred HHHHHHHhccccCCCeEEEe----------CccCCHH--HHHHHhc----cCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 130 LLSKRLEEGYYRGESGFILD----------GIPRTRI--QAEILDQ----IVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 130 ll~~~l~~~~~~~~~~~IlD----------g~p~~~~--qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
++...+. .+..+|+| |+|+... +...+.. ...+|.+|+|++|++++.+|+.+|.
T Consensus 75 ~i~~~l~-----~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~ 144 (195)
T 2pbr_A 75 KIIPDLK-----RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN 144 (195)
T ss_dssp THHHHHH-----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT
T ss_pred HHHHHHh-----CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC
Confidence 2222222 25678888 5555422 3322221 1268999999999999999998653
No 25
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.59 E-value=1.7e-15 Score=129.38 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=92.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~-~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
+..|+|+|+|||||||+|+.|++.+ ++.+++.|+ ++..+..... +.. ..+...+.....+.+...+...+... .
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~-~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~--~ 76 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG--D 76 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC--T
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccH-HHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc--c
Confidence 4689999999999999999999985 999999985 4444332110 000 00000000001122233333333110 2
Q ss_pred CCCeEEEeCccCCHHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCCCCcHHHHHHHH
Q 026951 142 GESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSAADAASAWKEKF 217 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~dd~~~~~~~rl 217 (230)
.+.++|+|+++.+..+...+.+. ..++.+|+|++|.+++.+|+.+|..+. ..++.+++++
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~----------------~~~e~i~~~~ 140 (301)
T 1ltq_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKA----------------VPIDVLRSMY 140 (301)
T ss_dssp TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGC----------------CCHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCC----------------CCHHHHHHHH
Confidence 36789999999998777666533 345589999999999999999987533 3467899999
Q ss_pred HHHHHhhh
Q 026951 218 RIYAEQIN 225 (230)
Q Consensus 218 ~~y~~~~~ 225 (230)
+.|.+...
T Consensus 141 ~~~~~~~~ 148 (301)
T 1ltq_A 141 KSMREYLG 148 (301)
T ss_dssp HHHHHHHT
T ss_pred HHHhcccC
Confidence 99887643
No 26
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.57 E-value=3e-14 Score=117.94 Aligned_cols=124 Identities=17% Similarity=0.072 Sum_probs=84.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCC--CccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHH-HHHHHH
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEV--PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL-LSKRLE 136 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~~--~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~l-l~~~l~ 136 (230)
+.++..|+|.|+|||||||+++.|++.++. .++.+ ....+++.++.+++++.++...++....-+ ...+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~ 96 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE 96 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 347889999999999999999999999874 33332 234567889999999888776554433221 222222
Q ss_pred hc------cccCCCeEEEe----------CccCCHHHHH--HHhc----cCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 137 EG------YYRGESGFILD----------GIPRTRIQAE--ILDQ----IVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 137 ~~------~~~~~~~~IlD----------g~p~~~~qa~--~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.. ....+..+|+| |+|+...+.. .+.. ...||++|+|++|++++.+|+.+|..
T Consensus 97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~ 171 (229)
T 4eaq_A 97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSR 171 (229)
T ss_dssp HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 11 01235789999 9988765543 3332 24799999999999999999999863
No 27
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.4e-14 Score=116.85 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=74.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~ 140 (230)
.++..|+|+|+|||||||+++.|++.+|+++++.|++++..... . +.+++.... ......+....+...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~--~----i~~~~~~~~---~~~~~~~e~~~l~~l-- 91 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHK--T----VGELFTERG---EAGFRELERNMLHEV-- 91 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTS--C----HHHHHHHHH---HHHHHHHHHHHHHHH--
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCC--c----HHHHHHhcC---hHHHHHHHHHHHHHH--
Confidence 35678999999999999999999999999999999988765321 1 222221100 011111111112221
Q ss_pred cCCCeEEEe---CccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHh-cC
Q 026951 141 RGESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL-ES 187 (230)
Q Consensus 141 ~~~~~~IlD---g~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~-~R 187 (230)
....++|++ |.+........+.+ ++.+|+|++|.+++.+|+. .|
T Consensus 92 ~~~~~~vi~~ggg~~~~~~~~~~l~~---~~~vi~L~~~~e~l~~Rl~~~~ 139 (199)
T 3vaa_A 92 AEFENVVISTGGGAPCFYDNMEFMNR---TGKTVFLNVHPDVLFRRLRIAK 139 (199)
T ss_dssp TTCSSEEEECCTTGGGSTTHHHHHHH---HSEEEEEECCHHHHHHHHHHTG
T ss_pred hhcCCcEEECCCcEEccHHHHHHHHc---CCEEEEEECCHHHHHHHHhcCC
Confidence 124678887 56665555554443 6789999999999999998 44
No 28
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.54 E-value=5.4e-14 Score=113.37 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=81.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
++.+|+|+|+|||||||+++.|++.+|+.+++.|++..... ......|....+......+. .+.... .
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~-~l~~~~-~ 84 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLA-AIGERL-A 84 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHH-HHHHHH-T
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHH-HHHHHH-h
Confidence 46789999999999999999999999999999987642210 01112233344332222221 111111 2
Q ss_pred CCCeEEEeCccCCHHHHHHHhccC-CcCEEEEEecCHHHHHHHHhcCCCC
Q 026951 142 GESGFILDGIPRTRIQAEILDQIV-DVDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~~-~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
.+.++|+|+.+....+.+.+.... .++.+|+|++|.+++.+|+.+|..+
T Consensus 85 ~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~ 134 (202)
T 3t61_A 85 SREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGH 134 (202)
T ss_dssp SSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSS
T ss_pred cCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhcc
Confidence 367899999888877777776553 4578999999999999999998653
No 29
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.53 E-value=2.2e-14 Score=114.18 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=73.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCC--CChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP--RSALYKQIANAVNEGKLVPEDVIFALLSKRLEEG 138 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~--~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~ 138 (230)
.++..|+|+|+|||||||+++.|++.+|+++++.|++....... .... ..... +.. ..-+.+...+...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~-~~~~~-~~~---~~~~~~~~~~~~~l~-- 75 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDR-EWSRR-VGA---TAIMMLYHTAATILQ-- 75 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSH-HHHHH-HHH---HHHHHHHHHHHHHHH--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccch-HHHHH-hhH---HHHHHHHHHHHHHHh--
Confidence 36789999999999999999999999999999997765432210 0000 00000 000 000111122222232
Q ss_pred cccCCCeEEEeCccCCHHHHHH---Hhc-cCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 139 YYRGESGFILDGIPRTRIQAEI---LDQ-IVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 139 ~~~~~~~~IlDg~p~~~~qa~~---l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
.+.++|+|+++....+... +.. ...++++|+|++|++++.+|+.+|.
T Consensus 76 ---~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~ 126 (193)
T 2rhm_A 76 ---SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI 126 (193)
T ss_dssp ---TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred ---CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence 2678999998833222222 222 2467899999999999999998875
No 30
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.53 E-value=1.5e-13 Score=108.98 Aligned_cols=111 Identities=19% Similarity=0.203 Sum_probs=70.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~-~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
+++|+|+|+|||||||+|+.|++.+|+++++.|+++++.... + +.+++. .|.....+....++...+..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~--~----~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 71 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGR--S----IADIFATDGEQEFRRIEEDVVRAALAD---- 71 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSS--C----HHHHHHHHCHHHHHHHHHHHHHHHHHH----
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCC--C----HHHHHHHhChHHHHHHHHHHHHHHHhc----
Confidence 356999999999999999999999999999999998876421 1 122221 22222222222333332222
Q ss_pred CCCeEEEeC--ccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 142 GESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 142 ~~~~~IlDg--~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
...+|.+| +.........+. .+.+|+|++|.+++.+|+.+|.
T Consensus 72 -~~~vi~~g~~~v~~~~~~~~l~----~~~vV~L~~~~e~~~~Rl~~r~ 115 (184)
T 2iyv_A 72 -HDGVLSLGGGAVTSPGVRAALA----GHTVVYLEISAAEGVRRTGGNT 115 (184)
T ss_dssp -CCSEEECCTTGGGSHHHHHHHT----TSCEEEEECCHHHHHHHTTCCC
T ss_pred -CCeEEecCCcEEcCHHHHHHHc----CCeEEEEeCCHHHHHHHHhCCC
Confidence 22333334 223322233332 5689999999999999999875
No 31
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.50 E-value=4.5e-13 Score=106.88 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHH------
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKR------ 134 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~---~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~------ 134 (230)
+.|+|+|+|||||||+|+.|++.+ |++++.+.+ ..+++.++.+.+++.++...+.....-....+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999 999886642 44567788888888766655543221111111
Q ss_pred HHhccccCCCeEEEeCc----------cCCHH--HHHHHh----ccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 135 LEEGYYRGESGFILDGI----------PRTRI--QAEILD----QIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 135 l~~~~~~~~~~~IlDg~----------p~~~~--qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+... ...+..+|+|.+ ++... ....+. ....||++|+|++|++++.+|+.+|.
T Consensus 75 i~~~-l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 143 (197)
T 2z0h_A 75 IKQY-LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN 143 (197)
T ss_dssp HTTC-----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C
T ss_pred HHHH-HhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccC
Confidence 2221 123567888844 43322 111221 22468999999999999999999983
No 32
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.50 E-value=1.5e-13 Score=108.95 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=73.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP--EDVIFALLSKRL 135 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~--de~~~~ll~~~l 135 (230)
++.|+|+|+|||||||+|+.|+++++ ++++++++++++........ ....++ ....+ ...+...+...+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~i 78 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLV-SDRDQM---RKMDPETQKRIQKMAGRKI 78 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSC-SSGGGG---SSCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCC-CCHHHH---hcCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999999998 99999999887653211000 000000 01111 112222232333
Q ss_pred HhccccCCCeEEEeCccCCHHHH--------HHHhccCCcCEEEEEecCHHHHHH-HHhc--CC
Q 026951 136 EEGYYRGESGFILDGIPRTRIQA--------EILDQIVDVDLVINFKSIEDQLVK-RNLE--SE 188 (230)
Q Consensus 136 ~~~~~~~~~~~IlDg~p~~~~qa--------~~l~~~~~~d~vI~L~~~~e~l~~-Rl~~--R~ 188 (230)
... ..+..+|+||++....++ ..+... .+|++|+|++|++++.+ |+.+ |.
T Consensus 79 ~~~--~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~rRl~~~~R~ 139 (192)
T 1kht_A 79 AEM--AKESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-NPDLIIVVETTGDEILMRRMSDETRV 139 (192)
T ss_dssp HHH--HTTSCEEEECCSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHTSSSCS
T ss_pred Hhh--ccCCeEEEccceeccccccccccCcHHHHhcc-CCCEEEEEeCCHHHHHHHHhhhcccC
Confidence 321 124689999976421111 122222 47899999999999996 8987 64
No 33
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.50 E-value=3.1e-14 Score=115.14 Aligned_cols=123 Identities=11% Similarity=0.080 Sum_probs=84.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHH-------H
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSK-------R 134 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~-------~ 134 (230)
+++.|+|+|+|||||||+|+.|++.++..+++++ ++++. ..+++.++.+.+++..+..+++.....+... .
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNE 86 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999998888873 33321 2346778888888877766776543333221 1
Q ss_pred HHhccccCCCeEEEeCccCC--HHH-------HHHHhc----cCCcCEEEEEecCHHHHHHHHhcC
Q 026951 135 LEEGYYRGESGFILDGIPRT--RIQ-------AEILDQ----IVDVDLVINFKSIEDQLVKRNLES 187 (230)
Q Consensus 135 l~~~~~~~~~~~IlDg~p~~--~~q-------a~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R 187 (230)
+... ...+..+|+|+++.+ ..+ .+++.. ...+|++|+|++|++++.+|+.+|
T Consensus 87 i~~~-l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r 151 (212)
T 2wwf_A 87 IKSL-LLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG 151 (212)
T ss_dssp HHHH-HHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT
T ss_pred HHHH-HhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC
Confidence 1111 012568999999864 112 122221 236899999999999999998765
No 34
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.50 E-value=8.5e-14 Score=108.93 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=68.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcccc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~-~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
..+|+|+|+|||||||+++.|++++|++++++|+++++... . .+.+++. .|.....+...+++.... .
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g--~----~~~~~~~~~g~~~~~~~~~~~l~~~~-~---- 75 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG--L----SVREIFEELGEDNFRMFEKNLIDELK-T---- 75 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT--S----CHHHHHHHTCHHHHHHHHHHHHHHHH-T----
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC--C----CHHHHHHHhCHHHHHHHHHHHHHHHH-h----
Confidence 45799999999999999999999999999999999887542 1 1233332 232111122222232222 1
Q ss_pred CCCeE-EEe-C--ccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 142 GESGF-ILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 142 ~~~~~-IlD-g--~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
...+ |++ | ++.. .. +..++.+|+|++|++++.+|+.+|.
T Consensus 76 -~~~~~Vi~~g~g~~~~-~~------l~~~~~vi~l~~~~e~~~~Rl~~r~ 118 (168)
T 1zuh_A 76 -LKTPHVISTGGGIVMH-EN------LKGLGTTFYLKMDFETLIKRLNQKE 118 (168)
T ss_dssp -CSSCCEEECCGGGGGC-GG------GTTSEEEEEEECCHHHHHHHHCC--
T ss_pred -cCCCEEEECCCCEech-hH------HhcCCEEEEEECCHHHHHHHHhccC
Confidence 1233 444 2 4443 21 2347899999999999999999883
No 35
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.49 E-value=6.5e-14 Score=111.20 Aligned_cols=119 Identities=17% Similarity=0.213 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHHHc-CCCChHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQEL-SPRSALYKQIANAVNEGKLVPE--DVIFALLSKRL 135 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~~~~-~~~~~~~~~i~~~l~~g~~v~d--e~~~~ll~~~l 135 (230)
+.|+|+|+|||||||+|+.|++.++ +.+++.++++++.. ......+. . ..+.+.++ ......+..++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---D--EMRKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---H--HHTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---h--hhhcCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999997 88998889887654 21111000 0 01223333 22222232333
Q ss_pred Hhcc-ccCCCeEEEeCccCCHHH--------HHHHhccCCcCEEEEEecCHHHHHHH-Hhc--CC
Q 026951 136 EEGY-YRGESGFILDGIPRTRIQ--------AEILDQIVDVDLVINFKSIEDQLVKR-NLE--SE 188 (230)
Q Consensus 136 ~~~~-~~~~~~~IlDg~p~~~~q--------a~~l~~~~~~d~vI~L~~~~e~l~~R-l~~--R~ 188 (230)
.... ...+..+|+||++....| ...+... .++.+|+|++|++++.+| +.+ |.
T Consensus 77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~~~rr~~~~~R~ 140 (194)
T 1nks_A 77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-NPSVIFLLEADPKIILSRQKRDTTRN 140 (194)
T ss_dssp HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHHCTTTC
T ss_pred HHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc-CCCEEEEEeCCHHHHHHHHHhhcccC
Confidence 2210 023678999998654433 2334333 589999999999998866 666 64
No 36
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.48 E-value=5.3e-13 Score=105.75 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=68.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
++..|+|+|+|||||||+++.|++.+|+++++.|+++++.... +..+.... .|.....+....++.. +..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~--~~~~~~~~---~g~~~~~~~~~~~~~~-~~~---- 73 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGA--DIAWIFEM---EGEAGFRRREREMIEA-LCK---- 73 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTS--CHHHHHHH---HHHHHHHHHHHHHHHH-HHH----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--ChhhHHHH---hCHHHHHHHHHHHHHH-HHh----
Confidence 3568999999999999999999999999999999988765432 11111111 0110011122222322 222
Q ss_pred CCCeEEEeC--ccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHH
Q 026951 142 GESGFILDG--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (230)
Q Consensus 142 ~~~~~IlDg--~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (230)
....+|..| .+........+... ..+|+|++|.+++.+|+
T Consensus 74 ~~~~vi~~gg~~~~~~~~~~~l~~~---~~vi~L~~~~e~l~~Rl 115 (185)
T 3trf_A 74 LDNIILATGGGVVLDEKNRQQISET---GVVIYLTASIDTQLKRI 115 (185)
T ss_dssp SSSCEEECCTTGGGSHHHHHHHHHH---EEEEEEECCHHHHHHHH
T ss_pred cCCcEEecCCceecCHHHHHHHHhC---CcEEEEECCHHHHHHHH
Confidence 123344444 45555555555442 47999999999999999
No 37
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.47 E-value=8.2e-13 Score=106.63 Aligned_cols=120 Identities=15% Similarity=0.191 Sum_probs=72.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCC-------------------
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVP------------------- 123 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~------------------- 123 (230)
+.+|+|+|++||||||+++.|++ +|+++++.|++.++...++......+.+.+.....-+
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 35799999999999999999987 9999999999988765554443333333332211110
Q ss_pred ----HHHHHHHHHHHHHhcc-ccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 124 ----EDVIFALLSKRLEEGY-YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 124 ----de~~~~ll~~~l~~~~-~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+.+....+...+.+.. ...+.++|+|+ |...... +. ..+|.+|+|++|++++.+|+.+|.
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~-~~l~e~~--~~--~~~d~vi~l~~~~e~~~~Rl~~R~ 145 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVV-PLLIENK--LT--ALCDRILVVDVSPQTQLARSAQRD 145 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEEC-TTTTTTT--CG--GGCSEEEEEECCHHHHHHHHC---
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCEEEEEe-chhhhcC--cH--hhCCEEEEEECCHHHHHHHHHHcC
Confidence 1111222222221110 01245788887 4322211 11 246899999999999999999985
No 38
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.47 E-value=1.5e-13 Score=107.16 Aligned_cols=110 Identities=17% Similarity=0.244 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhccccC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~-~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
++|+|+|+|||||||+|+.|++.+|++++++|++.+.... ..+.+++. .|.....++...++ ..+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~l-~~l~~----- 68 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG------LSIPQIFEKKGEAYFRKLEFEVL-KDLSE----- 68 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT------SCHHHHHHHSCHHHHHHHHHHHH-HHHTT-----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC------CCHHHHHHHhChHHHHHHHHHHH-HHHhc-----
Confidence 4699999999999999999999999999999999877542 12233332 22111111111122 12221
Q ss_pred CCeEEEe-C--ccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 143 ESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 143 ~~~~IlD-g--~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
...+|++ | .+........+. .+|.+|+|++|++++.+|+.+|.
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFMK---SRGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHHH---TTSEEEEEECCHHHHHHHCBCTT
T ss_pred cCCeEEECCCCEeCCHHHHHHHH---cCCEEEEEECCHHHHHHHHhCCC
Confidence 3456665 4 233333333443 36899999999999999999875
No 39
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.47 E-value=3.9e-13 Score=109.56 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCC-----CCCCHHH----------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDV---------- 126 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g-----~~v~de~---------- 126 (230)
+++.|+|+|++||||||+++.|++ +|+++++.|++.++...++......+.+.+... ..+....
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 567899999999999999999988 999999999999887655554444554443211 1122211
Q ss_pred --------HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 127 --------IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 127 --------~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+.+.+...+.........++++.+.|...... +. ..+|.+|+|++|++++.+|+.+|.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~~l~~~~--~~--~~~d~vi~l~~~~e~~~~Rl~~R~ 147 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENS--LY--KKANRVLVVDVSPETQLKRTMQRD 147 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTTT--GG--GGCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEeeeeeccC--cc--ccCCEEEEEECCHHHHHHHHHHcC
Confidence 11122111111000101234444445443322 22 247899999999999999998874
No 40
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.46 E-value=1.6e-12 Score=105.86 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh--CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHH---------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFAL--------- 130 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~--~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~l--------- 130 (230)
++..|+|.|+.||||||+++.|++.+ |..++.+. -+.+++.++.+.+++.++..++.....-+
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~------eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~ 74 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHL 74 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE------SSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee------CCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999988 44444321 23567889999999988877766533221
Q ss_pred ---HHHHHHhccccCCCeEEEeCccCC------------HHHHHHHhc----cCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 131 ---LSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 131 ---l~~~l~~~~~~~~~~~IlDg~p~~------------~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+.+.+. .+..+|.|.|..+ ......+.. ...||++|+|++|++++.+|+.+|+.
T Consensus 75 ~~~i~p~l~-----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~ 147 (205)
T 4hlc_A 75 VLKVIPALK-----EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSR 147 (205)
T ss_dssp HHTHHHHHH-----TTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---
T ss_pred HHHHHHHHH-----cCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCC
Confidence 222223 2567788976532 122222222 24799999999999999999998875
No 41
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.46 E-value=9.9e-14 Score=110.57 Aligned_cols=112 Identities=14% Similarity=0.307 Sum_probs=74.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH-hCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCC---CHHHHHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL-LEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLV---PEDVIFALLSKRLE 136 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~-~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v---~de~~~~ll~~~l~ 136 (230)
.++.+|+|+|+|||||||+++.|++. +|++++++|+++++... ....++. +.. ..+ +++.....+...+.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~-~~~~~~~----~~~-~~~~r~~~~~~~~~l~~~~~ 81 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF-YTEYDTE----LDT-HIIEEKDEDRLLDFMEPIMV 81 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTC-SCC----------C-CCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhh-hhhHHHH----hhh-cccCCCCHHHHHHHHHHHHh
Confidence 36778999999999999999999999 79999999999987421 1111111 111 122 33333444443332
Q ss_pred hccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 137 EGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 137 ~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
. ..++|+|+.... .|.. ..++.||+|++|.+++.+|+.+|+.
T Consensus 82 ~-----~g~~vi~~~~~~-----~~~~-~~~~~vi~l~~~~e~~~~Rl~~R~~ 123 (184)
T 1y63_A 82 S-----RGNHVVDYHSSE-----LFPE-RWFHMVVVLHTSTEVLFERLTKRQY 123 (184)
T ss_dssp S-----SSEEEEECSCCT-----TSCG-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred c-----cCCEEEeCchHh-----hhhh-ccCCEEEEEECCHHHHHHHHHhCCC
Confidence 2 357888865332 1221 1367899999999999999999863
No 42
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.45 E-value=1.1e-12 Score=105.36 Aligned_cols=114 Identities=17% Similarity=0.155 Sum_probs=75.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHH--H-----
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLS--K----- 133 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~-~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~--~----- 133 (230)
+++.|+|+|+|||||||+++.|++.+ |++++++++ ...++..++.+.+++..+..++.... .++. .
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~-----~~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~ 76 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF-----PQRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA 76 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES-----SCTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec-----CCCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence 57789999999999999999999998 577776531 11145678888888877655554322 2210 0
Q ss_pred -HHHhccccCCCeEEEeCccCCHH--H------HHHHh----ccCCcCEEEEEecCHHHHHH
Q 026951 134 -RLEEGYYRGESGFILDGIPRTRI--Q------AEILD----QIVDVDLVINFKSIEDQLVK 182 (230)
Q Consensus 134 -~l~~~~~~~~~~~IlDg~p~~~~--q------a~~l~----~~~~~d~vI~L~~~~e~l~~ 182 (230)
.+... ...+..+|+|+||.+.. + .+.+. ....+|++|+|++|++++.+
T Consensus 77 ~~i~~~-l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~ 137 (204)
T 2v54_A 77 SFIQEQ-LEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR 137 (204)
T ss_dssp HHHHHH-HHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT
T ss_pred HHHHHH-HHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh
Confidence 11110 01256799999987531 1 12222 11368999999999999887
No 43
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.45 E-value=1.8e-12 Score=106.10 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=80.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHHHHHcCCCChHHHHHHHHHHCCC--CCCHHHH-H-------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEGK--LVPEDVI-F------- 128 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~---~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~--~v~de~~-~------- 128 (230)
+++.|+|.|++||||||+++.|++.++ +.++.+. .+.+++.|+.+++++.++. .+..... .
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~------~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~ 78 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR------EPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA 78 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE------SSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc------CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999884 4444331 2357889999999998774 3443221 1
Q ss_pred ----HHHHHHHHhccccCCCeEEEeCccCC------------HHHHHHHhc----cCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 129 ----ALLSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 129 ----~ll~~~l~~~~~~~~~~~IlDg~p~~------------~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+.+.+.+. .+..+|.|.|..+ ..+...+.. ...||++|+|++|++++.+|+.+|.
T Consensus 79 ~~~~~~i~p~l~-----~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~ 153 (213)
T 4edh_A 79 QHLAGVIRPALA-----RGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARG 153 (213)
T ss_dssp HHHHHTHHHHHH-----TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHH-----CCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 11222222 3677888976432 222222322 2579999999999999999999985
No 44
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.45 E-value=2.7e-13 Score=109.66 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=75.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHH-----------H
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFA-----------L 130 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~-----------l 130 (230)
+++.|+|+|+|||||||+|+.|++.++..+++++. +++. ..++..+..+.+++..+..+++..... .
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 85 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPL 85 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999998777666632 2111 113667778888887665566543221 1
Q ss_pred HHHHHHhccccCCCeEEEeCcc-----CCHH----HHHHHhc----cCCcCEEEEEecCHHHHHHHHhcC
Q 026951 131 LSKRLEEGYYRGESGFILDGIP-----RTRI----QAEILDQ----IVDVDLVINFKSIEDQLVKRNLES 187 (230)
Q Consensus 131 l~~~l~~~~~~~~~~~IlDg~p-----~~~~----qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R 187 (230)
+...+. .+..+|+|.+. +... ..+.+.. ...+|++|+|++|++++.+|+..|
T Consensus 86 i~~~l~-----~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~ 150 (215)
T 1nn5_A 86 IKEKLS-----QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG 150 (215)
T ss_dssp HHHHHH-----TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred HHHHHH-----CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence 222222 25678999543 2111 1222322 235899999999999999999643
No 45
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.45 E-value=3.1e-12 Score=100.02 Aligned_cols=110 Identities=12% Similarity=0.121 Sum_probs=69.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
++.|+|+|+|||||||+|+.|++.+|+++++.|+++++... ......+.. .|. .....+....+... .
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g--~~~~~~~~~---~~~----~~~~~~~~~~~~~l--~- 69 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG--MTVADVVAA---EGW----PGFRRRESEALQAV--A- 69 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC--SCHHHHHHH---HHH----HHHHHHHHHHHHHH--C-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhC--CCHHHHHHH---cCH----HHHHHHHHHHHHHh--h-
Confidence 35799999999999999999999999999999999876522 222211110 111 11111111112221 1
Q ss_pred CCeEEEe-C--ccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHh--cC
Q 026951 143 ESGFILD-G--IPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNL--ES 187 (230)
Q Consensus 143 ~~~~IlD-g--~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~--~R 187 (230)
..++|++ | .+........+.. ++.+|+|++|++++.+|+. .|
T Consensus 70 ~~~~vi~~g~~~~~~~~~~~~l~~---~~~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 70 TPNRVVATGGGMVLLEQNRQFMRA---HGTVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp CSSEEEECCTTGGGSHHHHHHHHH---HSEEEEEECCHHHHHHHHHHHHC
T ss_pred cCCeEEECCCcEEeCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhccC
Confidence 2356665 4 3333333444432 5799999999999999999 77
No 46
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.45 E-value=3.7e-13 Score=111.35 Aligned_cols=126 Identities=16% Similarity=0.091 Sum_probs=79.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh---HHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG---SLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~---dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~ 137 (230)
.+++.|+|.|++||||||+++.|++.++..+++++ .+.+ .+.+++.|+.+++++.++...+.....-.+..+...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r--ep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~ 100 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR--EPGGTRLGETLREILLNQPMDLETEALLMFAGRREH 100 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE--SSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec--CCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 36889999999999999999999998843322211 0112 135678999999999887654443222222222211
Q ss_pred c------cccCCCeEEEeCccCC--HHH----------HHHHhc----cCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 138 G------YYRGESGFILDGIPRT--RIQ----------AEILDQ----IVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 138 ~------~~~~~~~~IlDg~p~~--~~q----------a~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
. ....+..+|.|.|..+ ..| ...+.. ...||++|+|++|++++.+|+.+|.
T Consensus 101 ~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~ 173 (227)
T 3v9p_A 101 LALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR 173 (227)
T ss_dssp HHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred HHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 0 0122567889987644 122 222222 2479999999999999999999985
No 47
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.42 E-value=8.1e-13 Score=106.44 Aligned_cols=112 Identities=17% Similarity=0.109 Sum_probs=68.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHHHcCCCChHHHHHHHHHHCCCC---CCHHHH--H------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKL---VPEDVI--F------ 128 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~--~is~~dll~~~~~~~~~~~~~i~~~l~~g~~---v~de~~--~------ 128 (230)
+++.|+|+|+|||||||+|+.|++.++.. ++.+. .+.++.+++++..+.. ...... .
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~----------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~ 72 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE----------WNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFS 72 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE----------TTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec----------CCcHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999874 33211 0112233333332221 222111 0
Q ss_pred ----HHHHHHHHhccccCCCeEEEeCccCCHH--H---------HHHHhc-cCCcCEEEEEecCHHHHHHHHh-cCC
Q 026951 129 ----ALLSKRLEEGYYRGESGFILDGIPRTRI--Q---------AEILDQ-IVDVDLVINFKSIEDQLVKRNL-ESE 188 (230)
Q Consensus 129 ----~ll~~~l~~~~~~~~~~~IlDg~p~~~~--q---------a~~l~~-~~~~d~vI~L~~~~e~l~~Rl~-~R~ 188 (230)
..+...+. .+..+|+|++|.+.. | ...+.. ...+|++|+|++|++++.+|+. +|.
T Consensus 73 ~~~~~~i~~~l~-----~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 73 DRYERYILPMLK-----SGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp HHHHHTHHHHHH-----TTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh-----CCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 01111122 357899999987632 2 222322 2358999999999999999999 775
No 48
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.42 E-value=7.6e-12 Score=98.25 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=72.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHhc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDV---IFALLSKRLEEG 138 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~---~~~ll~~~l~~~ 138 (230)
++..|+|+|+|||||||+++.|++.+|..+++.+++.+.. .+.. ...|..+.+.. ....+...+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAAFAM 76 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHHHHHHHH
Confidence 5678999999999999999999999999999988764210 0110 01122222211 111122212111
Q ss_pred cccCCCeEEEeCccCCHHHHHHHhccCCcC-EEEEEecCHHHHHHHHhcCCCC
Q 026951 139 YYRGESGFILDGIPRTRIQAEILDQIVDVD-LVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 139 ~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d-~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
. ..+..+|+|.......+.+.+.+.. ++ .+|+|++|++++.+|+.+|..+
T Consensus 77 ~-~~~~~~vi~~~~~~~~~~~~l~~~~-~~~~vv~l~~~~e~~~~R~~~R~~~ 127 (175)
T 1knq_A 77 Q-RTNKVSLIVCSALKKHYRDLLREGN-PNLSFIYLKGDFDVIESRLKARKGH 127 (175)
T ss_dssp H-HHCSEEEEECCCCSHHHHHHHHTTC-TTEEEEEEECCHHHHHHHHHTSTTC
T ss_pred H-hcCCcEEEEeCchHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhccCC
Confidence 0 1146788884323344445555543 45 7999999999999999998743
No 49
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.41 E-value=2.7e-12 Score=99.99 Aligned_cols=99 Identities=21% Similarity=0.174 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRGE 143 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~~ 143 (230)
..|+|+|+|||||||+++.|++.+++++++.+.+...... +...+ ... ..+. .+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~--------~~~~~------------~~~-~~l~-----~~ 55 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG--------NEKLF------------EHF-NKLA-----DE 55 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC--------HHHHH------------HHH-HHHT-----TC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH--------HHHHH------------HHH-HHHH-----hC
Confidence 4799999999999999999999999999999877654320 11111 111 1121 14
Q ss_pred CeEEEeCcc---------------CCHHHHHHHhc-cCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 144 SGFILDGIP---------------RTRIQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 144 ~~~IlDg~p---------------~~~~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
..+|.|.+. ....+...+.. ...++.+|+|++|++++.+|+.+|.
T Consensus 56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~ 116 (173)
T 3kb2_A 56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG 116 (173)
T ss_dssp CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHS
T ss_pred CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 456666332 12223333332 2468999999999999999999874
No 50
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.41 E-value=8.3e-13 Score=110.99 Aligned_cols=110 Identities=22% Similarity=0.285 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH---hCCCcc--chhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL---LEVPHI--SMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLE 136 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~---~~~~~i--s~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~ 136 (230)
+++.|+|+|+|||||||+|+.|++. +|++++ +.|++. +.+..-...++.. ........+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~-~~l~~~~~~~e~~----------~~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR-ESFPVWKEKYEEF----------IKKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH-TTSSSCCGGGHHH----------HHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH-HHHhhhhHHHHHH----------HHHHHHHHHHHHhh
Confidence 5778999999999999999999997 788877 766543 3322100001000 00111222322222
Q ss_pred hccccCCCeEEEeCccCCHHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCC
Q 026951 137 EGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 137 ~~~~~~~~~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
...+|+|+.+....+...+..+ ..++.+|+|++|++++.+|+.+|.
T Consensus 72 ------~~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 72 ------NYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp ------TSEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred ------CCEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence 2689999988777666655433 467899999999999999999886
No 51
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.41 E-value=4.1e-12 Score=102.32 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=77.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHhc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF---ALLSKRLEEG 138 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~---~ll~~~l~~~ 138 (230)
++..|+|+|++||||||+++.|+..+|..+++.+++.... ... ....|....+.... ..+...+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~---------~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPE---------NIA-TMQRGIPLTDEDRWPWLRSLAEWMDAR 97 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHH---------HHH-HHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHH---------HHH-HHhcCCCCCCcccccHHHHHHHHHHHH
Confidence 5678999999999999999999999999999887653210 000 01122222222111 1122211111
Q ss_pred cccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCCCC
Q 026951 139 YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEAFS 191 (230)
Q Consensus 139 ~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (230)
. ..+..+|+|.......+.+.+.+......+|+|++|++++.+|+.+|...+
T Consensus 98 ~-~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~ 149 (200)
T 4eun_A 98 A-DAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHF 149 (200)
T ss_dssp H-HTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCS
T ss_pred H-hcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCC
Confidence 0 124678888765666666667665556689999999999999999997544
No 52
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.41 E-value=5.3e-12 Score=99.55 Aligned_cols=112 Identities=13% Similarity=-0.003 Sum_probs=65.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc-chhHHHHHHcCCCChHHHHHHHHHHCCCCC----C--HHHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI-SMGSLVRQELSPRSALYKQIANAVNEGKLV----P--EDVIFALLSKR 134 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~i-s~~dll~~~~~~~~~~~~~i~~~l~~g~~v----~--de~~~~ll~~~ 134 (230)
+++.|+|+|+|||||||+|+.|++.++++++ +.+ ..+..+.+++..|... . .+.+.+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~-----------~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 72 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPE-----------EMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYA 72 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTH-----------HHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchh-----------hhHHHHHHhCccccchhhhhHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999988 321 1222333333211100 0 02233444444
Q ss_pred HHhccccCCCeEEEeCccCCHHHHH----HHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 135 LEEGYYRGESGFILDGIPRTRIQAE----ILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 135 l~~~~~~~~~~~IlDg~p~~~~qa~----~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+.. .+..+|+|+......... .+.....+-.+|+|++|++++.+|+.+|.
T Consensus 73 l~~----~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~ 126 (183)
T 2vli_A 73 SRE----AAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDG 126 (183)
T ss_dssp HHH----CSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-
T ss_pred HHh----CCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcc
Confidence 433 245688897665543322 22222233356999999999999999886
No 53
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.41 E-value=3.9e-13 Score=109.85 Aligned_cols=117 Identities=15% Similarity=0.192 Sum_probs=72.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcC----CCChH--HHHHHHHHH-----------------CC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS----PRSAL--YKQIANAVN-----------------EG 119 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~----~~~~~--~~~i~~~l~-----------------~g 119 (230)
+..|.|+|++||||||+++.|++.+|+++++.|++++.... .+..+ ...+.++.. +|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 46899999999999999999999999999999999985421 12111 112222211 12
Q ss_pred CCCCHHHH----H---------HHHHHHHHhc--cccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHH
Q 026951 120 KLVPEDVI----F---------ALLSKRLEEG--YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (230)
Q Consensus 120 ~~v~de~~----~---------~ll~~~l~~~--~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (230)
..+++.+. . +.+...+... ....+.++|+||.... + ..+..+|++|+|++|++++.+|+
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~--~----~~~~~~d~~i~l~~~~e~~~~R~ 158 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMG--T----VVFPDAPVKIFLDASSEERAHRR 158 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCC--C----CCCTTCSEEEEEECCHHHHHHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCcc--c----eEecCCCEEEEEeCCHHHHHHHH
Confidence 22222111 0 2233322211 0123578999997322 1 11235799999999999999994
Q ss_pred h
Q 026951 185 L 185 (230)
Q Consensus 185 ~ 185 (230)
.
T Consensus 159 ~ 159 (227)
T 1cke_A 159 M 159 (227)
T ss_dssp H
T ss_pred H
Confidence 3
No 54
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.40 E-value=1.5e-13 Score=108.32 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhccccC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVN-EGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~-~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
.+|+|+|+|||||||+++.|++.+++++++.|+++++.... . +.+++. .|.....+....++. .+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~--~----~~~~~~~~g~~~~~~~~~~~~~-~l~~----- 72 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQ--K----VSEIFEQKRENFFREQEQKMAD-FFSS----- 72 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTS--C----HHHHHHHHCHHHHHHHHHHHHH-HHTT-----
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCC--C----HHHHHHHcCHHHHHHHHHHHHH-HHHc-----
Confidence 46999999999999999999999999999999988765321 1 112221 121111122222222 2221
Q ss_pred CCeEEEe-CccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 143 ESGFILD-GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 143 ~~~~IlD-g~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
...+|++ |.+.... .. +. ..+.+|+|++|.+++.+|+.+|.
T Consensus 73 ~~~~vi~~g~~~~~~-~~-l~---~~~~~i~l~~~~e~~~~R~~~r~ 114 (175)
T 1via_A 73 CEKACIATGGGFVNV-SN-LE---KAGFCIYLKADFEYLKKRLDKDE 114 (175)
T ss_dssp CCSEEEECCTTGGGS-TT-GG---GGCEEEEEECCHHHHTTCCCGGG
T ss_pred cCCEEEECCCCEehh-hH-Hh---cCCEEEEEeCCHHHHHHHHhccc
Confidence 3456665 5432221 11 32 34789999999999999998773
No 55
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.39 E-value=1.7e-12 Score=106.01 Aligned_cols=122 Identities=13% Similarity=0.090 Sum_probs=83.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCC-----CCCH-------------
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPE------------- 124 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~-----~v~d------------- 124 (230)
.-.|.|+|.+||||||+++.|++ +|+++|++|.+.++.+.++......|.+.+..+. .+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~ 87 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA 87 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence 45699999999999999999987 9999999999999998887777777776664322 2221
Q ss_pred -----HHHHHHHHHHHHhccc-cCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 125 -----DVIFALLSKRLEEGYY-RGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 125 -----e~~~~ll~~~l~~~~~-~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.++.+.+...+..... ....-+|+|. |.-.+... +.. .+|.+|+++||+++..+|+++|..
T Consensus 88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~~-~~~--~~D~vi~V~ap~e~r~~Rl~~Rdg 154 (210)
T 4i1u_A 88 RRRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESRN-WKA--RCDRVLVVDCPVDTQIARVMQRNG 154 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCHH-HHH--HCSEEEEEECCHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccCC-ccc--cCCeEEEEECCHHHHHHHHHhcCC
Confidence 2334444433332111 2234566774 54433111 111 468999999999999999999853
No 56
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.39 E-value=1.5e-12 Score=108.31 Aligned_cols=120 Identities=14% Similarity=0.070 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCC---CCCCHHHHH----------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG---KLVPEDVIF---------- 128 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g---~~v~de~~~---------- 128 (230)
++..|+|.|++||||||+++.|++.++...++...+.++ +.+++.++.+++++..+ ..++..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~ 103 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL 103 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999886544442222332 35788999999998632 234433211
Q ss_pred --HHHHHHHHhccccCCCeEEEeCccCC------------HHHHHHHhc----cCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 129 --ALLSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 129 --~ll~~~l~~~~~~~~~~~IlDg~p~~------------~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+.+.+.+. .+..+|.|.|..+ ......+.. ...||++|+|++|++++.+|+.+|.
T Consensus 104 ~~~~I~paL~-----~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~ 176 (236)
T 3lv8_A 104 VENVIKPALA-----RGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRG 176 (236)
T ss_dssp HHHTHHHHHH-----TTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----
T ss_pred HHHHHHHHHH-----cCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 12222333 2678889976422 122222222 2479999999999999999999886
No 57
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.38 E-value=2.9e-12 Score=107.45 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=74.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcccc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNE-GKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~-g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
+..|+|+|+|||||||+++.|++.+|+++++.+++++.... +.. +.+++.. |.....+....++......
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-g~~----i~~i~~~~ge~~fr~~e~~~l~~l~~~---- 118 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-GTS----VAEIFEHFGESVFREKETEALKKLSLM---- 118 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-TSC----HHHHHHHHCHHHHHHHHHHHHHHHHHH----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-Ccc----HHHHHHHhCcHHHHHHHHHHHHHHHhh----
Confidence 66899999999999999999999999999999999887652 222 2333322 2222222222333332222
Q ss_pred CCCeEEEe--CccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcC
Q 026951 142 GESGFILD--GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (230)
Q Consensus 142 ~~~~~IlD--g~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (230)
....+|.+ |.+....+...+.. +++|+|++|.+++.+|+.++
T Consensus 119 ~~~~Via~GgG~v~~~~~~~~l~~----~~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 119 YHQVVVSTGGGAVIRPINWKYMHK----GISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp CSSEEEECCGGGGGSHHHHHHHTT----SEEEEEECCHHHHHHHHHC-
T ss_pred cCCcEEecCCCeecCHHHHHHHhC----CcEEEEECCHHHHHHHHhhc
Confidence 12345554 46666666665542 78999999999999999864
No 58
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.38 E-value=5e-12 Score=103.51 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=79.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc-chhHHHHHHcCCCChHHHHHHHHHHCC-----CCCCHHHH--------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI-SMGSLVRQELSPRSALYKQIANAVNEG-----KLVPEDVI-------- 127 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~i-s~~dll~~~~~~~~~~~~~i~~~l~~g-----~~v~de~~-------- 127 (230)
+++.|+|.|++||||||+++.|++.+.-..+ ++ .+.+ .+.++++|+.|++++... ..+.+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~r--ep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R 78 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTR--EPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAAR 78 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEE--SSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeee--CCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHH
Confidence 4678999999999999999999998743322 11 1111 135688999999998732 23443321
Q ss_pred ----HHHHHHHHHhccccCCCeEEEeCccCC------------HHHHHHHhc----cCCcCEEEEEecCHHHHHHHHhcC
Q 026951 128 ----FALLSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQ----IVDVDLVINFKSIEDQLVKRNLES 187 (230)
Q Consensus 128 ----~~ll~~~l~~~~~~~~~~~IlDg~p~~------------~~qa~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R 187 (230)
.+.+.+.+.. +..+|.|.|..+ ......+.. ...||++|+|++|++++.+|+.+|
T Consensus 79 ~~~~~~~i~paL~~-----g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R 153 (213)
T 4tmk_A 79 VQLVETVIKPALAN-----GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR 153 (213)
T ss_dssp HHHHHHTHHHHHHT-----TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-----CCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 1223333333 677889976533 222222222 247999999999999999999988
Q ss_pred C
Q 026951 188 E 188 (230)
Q Consensus 188 ~ 188 (230)
.
T Consensus 154 ~ 154 (213)
T 4tmk_A 154 G 154 (213)
T ss_dssp S
T ss_pred C
Confidence 5
No 59
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.37 E-value=1.5e-12 Score=110.76 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=79.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCC-----CCCCHH---------
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG-----KLVPED--------- 125 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g-----~~v~de--------- 125 (230)
+.++.+|+|+|+|||||||+|+.|+ .+|+++|++|++.++...++......+.+.+... ..+...
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 3467899999999999999999999 6999999999999987776655554444433221 111111
Q ss_pred ---------HHHHHH----HHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 126 ---------VIFALL----SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 126 ---------~~~~ll----~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
++.+.+ ...+......+...+|+||...... .+. ..+|.+|+|++|++++.+|+.+|.
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~--~~~d~vI~l~a~~ev~~~Rl~~R~ 221 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ--SMVHEVWTVVIPETEAVRRIVERD 221 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG--GGCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH--HhCCEEEEEcCCHHHHHHHHHHcC
Confidence 111111 1222211111235789998632211 111 236899999999999999999884
No 60
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.37 E-value=4.7e-13 Score=105.84 Aligned_cols=110 Identities=20% Similarity=0.228 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
++..|+|+|+|||||||+++.|++.+++.++++++++++..... ..+.. ........+.+...+...+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~---- 79 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYD-GYDEE-----YDCPILDEDRVVDELDNQMRE---- 79 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEE-EEETT-----TTEEEECHHHHHHHHHHHHHH----
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhh-hhhhh-----hcCccCChHHHHHHHHHHHhc----
Confidence 45679999999999999999999999999999999988752100 00000 001122344444555544443
Q ss_pred CCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 142 GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.++|+|+....... . ..++.+|+|++|++++.+|+.+|..
T Consensus 80 --g~~vv~~~~~~~~~-----~-~~~~~vi~L~~~~e~l~~R~~~r~~ 119 (180)
T 3iij_A 80 --GGVIVDYHGCDFFP-----E-RWFHIVFVLRTDTNVLYERLETRGY 119 (180)
T ss_dssp --CCEEEECSCCTTSC-----G-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred --CCEEEEechhhhcc-----h-hcCCEEEEEECCHHHHHHHHHHcCC
Confidence 46778765432111 0 1268999999999999999999863
No 61
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.34 E-value=3.4e-12 Score=102.71 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCC-----CCCHH-------------
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-----LVPED------------- 125 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~-----~v~de------------- 125 (230)
++|+|+|++||||||+++.|++ +|++++++|+++++...++......+.+.+.... .+...
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 9999999999998776554444444444332211 11111
Q ss_pred -----HHHHHHH----HHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 126 -----VIFALLS----KRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 126 -----~~~~ll~----~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+....+. ..+... .++..+|+|+.-..... +.. .+|.+|+|++|++++.+|+.+|.
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~--~~~~~vive~~~l~~~~---~~~--~~~~~i~l~~~~e~~~~Rl~~R~ 145 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNL--SEDTLFILEASLLVEKG---TYK--NYDKLIVVYAPYEVCKERAIKRG 145 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHS--CTTCCEEEECSCSTTTT---CGG--GSSEEEEECCCHHHHHHHHHHTC
T ss_pred HHHHHhhCHHHHHHHHHHHHhc--cCCCEEEEEccccccCC---chh--hCCEEEEEECCHHHHHHHHHHcC
Confidence 1111111 111111 11267888974221110 111 36899999999999999999884
No 62
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.33 E-value=2.6e-12 Score=100.59 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=67.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
++..|+|+|+|||||||+++.|++.+++++++.++++++... .......+. .|.....+....++. .+..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~--~~i~~i~~~---~g~~~~~~~~~~~l~-~l~~---- 72 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG--ADVGWVFDL---EGEEGFRDREEKVIN-ELTE---- 72 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT--SCHHHHHHH---HHHHHHHHHHHHHHH-HHHT----
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC--cCHHHHHHH---HhHHHHHHHHHHHHH-HHHh----
Confidence 456799999999999999999999999999999988876432 112211110 010000000112222 2222
Q ss_pred CCCeEEEe---CccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 142 GESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 142 ~~~~~IlD---g~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
..++++. |.+......+.+.. .+++++|++|++++.+|+.+|.
T Consensus 73 -~~~~v~~~~~~~~~~~~~~~~l~~---~~~~i~l~~~~~~l~~R~~~r~ 118 (173)
T 1kag_A 73 -KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQLARTQRDK 118 (173)
T ss_dssp -SSSEEEECCTTGGGSHHHHHHHHH---HSEEEECCCCHHHHHSCC----
T ss_pred -CCCeEEECCCeEEecHHHHHHHHh---CCEEEEEeCCHHHHHHHHhCCC
Confidence 2455554 34444444444443 4689999999999999998874
No 63
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.33 E-value=8.1e-12 Score=111.90 Aligned_cols=101 Identities=15% Similarity=0.053 Sum_probs=77.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcc
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGY 139 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~ 139 (230)
..++..|+|+|+|||||||+|+.|++.+++.+++.|++- .. ..+...+...+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~~----------------~~~~~~~~~~l~~-- 308 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------SW----------------QRCVSSCQAALRQ-- 308 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------SH----------------HHHHHHHHHHHHT--
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------HH----------------HHHHHHHHHHHhc--
Confidence 346789999999999999999999999999999998750 00 1122333444443
Q ss_pred ccCCCeEEEeCccCCHHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 140 YRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 140 ~~~~~~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
+..+|+|+.+.+..+...+.++ .....+|+|++|.+++.+|+..|..
T Consensus 309 ---g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 309 ---GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp ---TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred ---CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 5789999998887777665432 3455799999999999999999865
No 64
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.31 E-value=1.1e-11 Score=99.23 Aligned_cols=118 Identities=12% Similarity=0.086 Sum_probs=73.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHH----HCCCCCCHHHHH--------
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAV----NEGKLVPEDVIF-------- 128 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l----~~g~~v~de~~~-------- 128 (230)
.++..|+|+|++||||||+++.|++. |+++++.|+++++.. ++.+ ..+.+.+ .+| .+....+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g-~i~~~~l~~~~~~~~~ 80 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGG-RLDRRALARLVFSDPE 80 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETT-EECHHHHHHHHTTSHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCC-CcCHHHHHHHHhCCHH
Confidence 46789999999999999999999998 999999999988765 2222 2222222 111 12222211
Q ss_pred ----------HHH-HHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 129 ----------ALL-SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 129 ----------~ll-~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+++ ...+......++..+|+|+ |..... .+. ..+|.+|+|++|++++.+|+.+|.
T Consensus 81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~--~~~--~~~d~~i~l~~~~e~~~~R~~~R~ 146 (203)
T 1uf9_A 81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK--GWE--GRLHGTLLVAAPLEERVRRVMARS 146 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT--TCG--GGSSEEEEECCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc--Cch--hhCCEEEEEECCHHHHHHHHHHcC
Confidence 111 1222221112246678886 432111 011 146899999999999999999884
No 65
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.26 E-value=1.5e-11 Score=99.12 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=70.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCC----CCCCH-------------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEG----KLVPE------------- 124 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g----~~v~d------------- 124 (230)
-..+|+|+|++||||||+++.|++.+|+++|++|++.++...+ ....+.+.+... ..+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~ 87 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESREN 87 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHH
Confidence 3468999999999999999999999999999999999887543 112232222211 01111
Q ss_pred -----HHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHH
Q 026951 125 -----DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (230)
Q Consensus 125 -----e~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (230)
.+..+.+...+.......+..+|+| .|...+.. +.. .+|.+|++++|+++..+|+
T Consensus 88 ~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d-~pll~e~~--~~~--~~d~vi~v~a~~e~r~~Rl 147 (192)
T 2grj_A 88 LKKLELLVHPLMKKRVQEIINKTSGLIVIE-AALLKRMG--LDQ--LCDHVITVVASRETILKRN 147 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEEEE-CTTTTTTT--GGG--GCSEEEEEECCHHHHHHHC
T ss_pred HHHHHhhhCHHHHHHHHHHHHHcCCEEEEE-EeceeecC--hHH--hCCEEEEEECCHHHHHHHH
Confidence 1222222222221110113456677 45443321 222 3688999999999999998
No 66
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.25 E-value=5.3e-11 Score=95.53 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=71.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcC----CCCh--HHHHHHHHH-----------------HCCCC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS----PRSA--LYKQIANAV-----------------NEGKL 121 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~----~~~~--~~~~i~~~l-----------------~~g~~ 121 (230)
.|.|+|++||||||+++.|++.+|+++++.|++.+.... .+.+ ....+...+ ..|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 799999999999999999999999999999999876531 1110 011111111 12222
Q ss_pred CCH----HH-------------HHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHH
Q 026951 122 VPE----DV-------------IFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (230)
Q Consensus 122 v~d----e~-------------~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (230)
+.. +. +.+.+...+... . .++|+||.... . .-...+|++|+|++|++++.+|+
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~-~~~vi~g~~~~--~----~~~~~~d~~i~l~a~~e~~~~R~ 153 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEV---P-PPFVAEGRDMG--T----AVFPEAAHKFYLTASPEVRAWRR 153 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHS---C-SCEEEEESSCC--C----CCCTTCSEEEEEECCHHHHHHHH
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHh---c-CCEEEEcccee--E----EEecCCcEEEEEECCHHHHHHHH
Confidence 211 11 111122222222 2 68999986432 0 01124689999999999999999
Q ss_pred hcCCC
Q 026951 185 LESEA 189 (230)
Q Consensus 185 ~~R~~ 189 (230)
.+|..
T Consensus 154 ~~r~~ 158 (208)
T 3ake_A 154 ARERP 158 (208)
T ss_dssp HHTSS
T ss_pred Hhhcc
Confidence 98853
No 67
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.25 E-value=1.6e-10 Score=93.37 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=73.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHH----------HH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL---EVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF----------AL 130 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~---~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~----------~l 130 (230)
+.|+|.|+.||||||+++.|++.+ |..++.+. .+.+++.++.+.+++.++..-|..... ..
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr------eP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR------EPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE------SSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE------CCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999877 56655432 235677888888877665544432211 11
Q ss_pred HHHHHHhccccCCCeEEEeCccCC--HHH----------HHHHhc----cCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 131 LSKRLEEGYYRGESGFILDGIPRT--RIQ----------AEILDQ----IVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 131 l~~~l~~~~~~~~~~~IlDg~p~~--~~q----------a~~l~~----~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+...+. .+..+|.|.|..+ ..| ...+.. ...||++|+|++|+++..+|..+|.
T Consensus 75 I~~~L~-----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d 143 (197)
T 3hjn_A 75 IKQYLS-----EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN 143 (197)
T ss_dssp HHHHHT-----TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C
T ss_pred HHHHHH-----CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC
Confidence 222222 3667888977533 111 122211 1369999999999999999976554
No 68
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.25 E-value=7.5e-11 Score=100.61 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=74.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh--CCCccchhHHHHHHcCCCChHHHHHHHHHHCC----CCCCHHHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISMGSLVRQELSPRSALYKQIANAVNEG----KLVPEDVIFALLSKR 134 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~--~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g----~~v~de~~~~ll~~~ 134 (230)
.++..|+|+|+|||||||+|+.|++.+ ++.+||.|+ ++..... ....+..+...- ......+...++...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~-~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 106 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT-FKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISRL 106 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH-HHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH-hHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHHH
Confidence 467899999999999999999999998 788888754 4432211 111111110000 000112223344444
Q ss_pred HHhccccCCCeEEEeCccCCHHHHHHH----hccCCcCEEEEEecCHHHH----HHHHhcCC
Q 026951 135 LEEGYYRGESGFILDGIPRTRIQAEIL----DQIVDVDLVINFKSIEDQL----VKRNLESE 188 (230)
Q Consensus 135 l~~~~~~~~~~~IlDg~p~~~~qa~~l----~~~~~~d~vI~L~~~~e~l----~~Rl~~R~ 188 (230)
+.. +..+|+|+.+....+...+ .+.+....+++|.+|++++ .+|+..|.
T Consensus 107 l~~-----g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 107 SDQ-----GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMY 163 (287)
T ss_dssp HHH-----TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred Hhc-----CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 443 6789999998886655443 2333444579999999999 88886653
No 69
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.24 E-value=4.2e-11 Score=96.66 Aligned_cols=136 Identities=14% Similarity=0.107 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHHHcC---CCCh----HHHHHHHHHHCCCCCCHH-------
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELS---PRSA----LYKQIANAVNEGKLVPED------- 125 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~-~~is~~dll~~~~~---~~~~----~~~~i~~~l~~g~~v~de------- 125 (230)
.++..|+|+|||||||||+++.|++.++- .++++.+..|.... .+.. ....+...+.+|..+...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 46778999999999999999999998842 22222211111100 0000 011222333333332110
Q ss_pred -HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCC--cCEEEEEe-cCHHHHHHHHhcCCCCCCccchhccCC
Q 026951 126 -VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD--VDLVINFK-SIEDQLVKRNLESEAFSPHKEFLRLGG 201 (230)
Q Consensus 126 -~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~--~d~vI~L~-~~~e~l~~Rl~~R~~~~~~~~~~~~~~ 201 (230)
.....+...+.. +..+|+|+.+....+ +..... ...+|+|+ +|.+++.+|+.+|..
T Consensus 90 ~~~~~~i~~~l~~-----g~~vi~d~~~~~~~~---l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~------------ 149 (204)
T 2qor_A 90 GTLKSEYDLAVGE-----GKICLFEMNINGVKQ---LKESKHIQDGIYIFVKPPSIDILLGRLKNRNT------------ 149 (204)
T ss_dssp EEEHHHHHHHHHT-----TCEEEEECCHHHHHH---HHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT------------
T ss_pred cCCHHHHHHHHHc-----CCeEEEEECHHHHHH---HHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC------------
Confidence 001123333443 678999986644333 333222 23789998 999999999998864
Q ss_pred CCCCCCCcHHHHHHHHHHHHH
Q 026951 202 ARFSAADAASAWKEKFRIYAE 222 (230)
Q Consensus 202 ~~~~~dd~~~~~~~rl~~y~~ 222 (230)
++++.+++|+..++.
T Consensus 150 ------~~~~~i~~rl~~~~~ 164 (204)
T 2qor_A 150 ------EKPEEINKRMQELTR 164 (204)
T ss_dssp ------SCHHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHH
Confidence 234566777666543
No 70
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.24 E-value=3.7e-11 Score=99.00 Aligned_cols=117 Identities=13% Similarity=0.074 Sum_probs=67.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHH-----------
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF----------- 128 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~-~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~----------- 128 (230)
.+++.|+|.|++||||||+++.|++.++. ..+++-.+. ..+.+++.++.|++++.+..........
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~t--reP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~ 96 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLT--REPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF 96 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEE--ESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEee--eCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999997754 222221001 1134678888898888753324443221
Q ss_pred -HHHHHHHHhccccCCCeEEEeCccCC------------HHHHHHHhcc---CCcCEEEEEecCHHHHHHHH
Q 026951 129 -ALLSKRLEEGYYRGESGFILDGIPRT------------RIQAEILDQI---VDVDLVINFKSIEDQLVKRN 184 (230)
Q Consensus 129 -~ll~~~l~~~~~~~~~~~IlDg~p~~------------~~qa~~l~~~---~~~d~vI~L~~~~e~l~~Rl 184 (230)
+.+...+. .+..+|.|.|..+ ......+..+ ..||++|+|++|++++.+|+
T Consensus 97 ~~~I~paL~-----~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri 163 (223)
T 3ld9_A 97 VKIIKPSLM-----QKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS 163 (223)
T ss_dssp HHTHHHHHH-----TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC--------
T ss_pred HHHHHHHHh-----cCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh
Confidence 11222222 2567888977532 1122222222 37999999999999999999
No 71
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.24 E-value=3.8e-11 Score=100.35 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=70.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC--CCccchhHHHHHHcCC----CChHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLVRQELSP----RSALYKQIANAVNEGKLVPEDVIFALLSKR 134 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~--~~~is~~dll~~~~~~----~~~~~~~i~~~l~~g~~v~de~~~~ll~~~ 134 (230)
.++..|+|+|+|||||||+++.|++.++ +.+++.|. ++..... ....+..+.++... .....+..++...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~-~r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~~ 105 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS-FRSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTKL 105 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG-GGTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH-HHHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHHH
Confidence 4678999999999999999999999987 44556654 3332111 00000001111100 0011222222222
Q ss_pred HHhccccCCCeEEEeCccCCHHHHHHHh----ccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 135 LEEGYYRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 135 l~~~~~~~~~~~IlDg~p~~~~qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+. .+.++|+|+++....+...+. ..+..-.++++.+|.+++.+|+.+|.
T Consensus 106 ~~-----~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 106 SS-----LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HH-----TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred Hh-----cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence 22 246899999998876654443 22333346788999999999998874
No 72
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.22 E-value=1.2e-11 Score=103.16 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=72.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC----------ccchhHHHHHHcCCCChHHHHHHHHHHCCCC-------CC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP----------HISMGSLVRQELSPRSALYKQIANAVNEGKL-------VP 123 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~----------~is~~dll~~~~~~~~~~~~~i~~~l~~g~~-------v~ 123 (230)
.++.+|+|+|+|||||||+|+.|++.+|++ ++++|++++... ...+.. ...|.. ..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~------~~~~~~-~~~g~~~f~~~~~~d 92 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT------SEQKAK-ALKGQFNFDHPDAFD 92 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC------HHHHHH-HHTTCSCTTSGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC------hhhhhh-hccCCCCCCCcchhh
Confidence 366789999999999999999999999988 688998875321 111111 112221 11
Q ss_pred HHHHHHHHHHHHHhc-------------------cccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHH
Q 026951 124 EDVIFALLSKRLEEG-------------------YYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRN 184 (230)
Q Consensus 124 de~~~~ll~~~l~~~-------------------~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl 184 (230)
.+.+.+.+....... .......+|+||.+.... .. +.. .+|.+|+|++|++++++|+
T Consensus 93 ~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~-~~-~~~--~~d~vi~l~~~~e~~~~R~ 168 (252)
T 1uj2_A 93 NELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS-QE-VRD--LFQMKLFVDTDADTRLSRR 168 (252)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS-HH-HHH--HCSEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC-HH-HHH--hcCeeEEEeCCHHHHHHHH
Confidence 222333343322100 001245789999654211 11 222 2578999999999999999
Q ss_pred hcCC
Q 026951 185 LESE 188 (230)
Q Consensus 185 ~~R~ 188 (230)
..|.
T Consensus 169 ~~R~ 172 (252)
T 1uj2_A 169 VLRD 172 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 73
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.22 E-value=2.7e-10 Score=89.33 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=66.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccc--hhHHHHHHcCCCC---hHHHHHHHHHHCCCCC-CH---HHH---HH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLVRQELSPRS---ALYKQIANAVNEGKLV-PE---DVI---FA 129 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is--~~dll~~~~~~~~---~~~~~i~~~l~~g~~v-~d---e~~---~~ 129 (230)
++..|+|+|+|||||||+++.|++.++.+++. .|++... ..... ..+..+.+ .+... .. ... ..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 77 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA-MPLKMQSAEGGIEFDA---DGGVSIGPEFRALEGAWAE 77 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH-SCGGGGTSTTSEEECT---TSCEEECHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh-cchhhccchhhccccC---CCccccchhHHHHHHHHHH
Confidence 35689999999999999999999999877664 6665543 22110 00000000 00000 01 111 11
Q ss_pred HHHHHHHhccccCCCeEEEeCccC-CHHHHHHH-hccCC-cCEEEEEecCHHHHHHHHhcCCCC
Q 026951 130 LLSKRLEEGYYRGESGFILDGIPR-TRIQAEIL-DQIVD-VDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 130 ll~~~l~~~~~~~~~~~IlDg~p~-~~~qa~~l-~~~~~-~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
.+...+. .+..+|+|+... .......+ ..+.. +..+|+|+||.+++.+|+.+|...
T Consensus 78 ~~~~~~~-----~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~~ 136 (178)
T 1qhx_A 78 GVVAMAR-----AGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDR 136 (178)
T ss_dssp HHHHHHH-----TTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSS
T ss_pred HHHHHHh-----cCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCCc
Confidence 1222122 256799998543 22211222 22222 336888999999999999988643
No 74
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.19 E-value=3.6e-10 Score=93.24 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=73.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHc----CCCChH--HHHHHHHH------------------
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL----SPRSAL--YKQIANAV------------------ 116 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~----~~~~~~--~~~i~~~l------------------ 116 (230)
.++.+|+|+|++||||||+++.|++.+|+++++.|++.+... ..+.+. ...+...+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~ 93 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVF 93 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEe
Confidence 478899999999999999999999999999999999998642 122221 01111111
Q ss_pred HCCCC----CCHHHHHH-------------HHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHH
Q 026951 117 NEGKL----VPEDVIFA-------------LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQ 179 (230)
Q Consensus 117 ~~g~~----v~de~~~~-------------ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~ 179 (230)
.+|.. +..+.+.. .+...+... ..+.++|+||++... ..+ ..++++|+|++|+++
T Consensus 94 ~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~--~~~~~~v~~g~~~~~---~~l---~~~d~vi~L~a~~e~ 165 (236)
T 1q3t_A 94 VGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEI--AQQGGIVMDGRDIGT---VVL---PQAELKIFLVASVDE 165 (236)
T ss_dssp ETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHH--HTTSCEEEECSSCSS---SSG---GGCSEEEEEECCHHH
T ss_pred ECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHh--cccCCEEEECCcchh---hhc---cCCCEEEEEECCHHH
Confidence 22321 11212221 122212111 125689999986531 011 135899999999999
Q ss_pred HHHHH
Q 026951 180 LVKRN 184 (230)
Q Consensus 180 l~~Rl 184 (230)
+.+|+
T Consensus 166 ~~~R~ 170 (236)
T 1q3t_A 166 RAERR 170 (236)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99998
No 75
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.17 E-value=3.8e-10 Score=103.80 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=90.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCc-----cchhHHHHHHcCCCChHHHHHHHHHHCCC----CCCHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPH-----ISMGSLVRQELSPRSALYKQIANAVNEGK----LVPEDVIFALL 131 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~-----is~~dll~~~~~~~~~~~~~i~~~l~~g~----~v~de~~~~ll 131 (230)
.++..|+|+|.|||||||+|+.|++.+++.+ ++.|++.+........ .+++.... .+........+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~-----~~~f~~~~~~~~~~re~~~~~~l 107 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSS-----YNFFRPDNEEAMKVRKQCALAAL 107 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCC-----GGGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCcc-----ccccCcccHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999986554 5668866654332110 01110000 00001111112
Q ss_pred H---HHHHhccccCCCeEEEeCccCCHHHHHHHhcc----CCcCEEEEEecC-HHHHHHHHhcCCCCCCccchhccCCCC
Q 026951 132 S---KRLEEGYYRGESGFILDGIPRTRIQAEILDQI----VDVDLVINFKSI-EDQLVKRNLESEAFSPHKEFLRLGGAR 203 (230)
Q Consensus 132 ~---~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~----~~~d~vI~L~~~-~e~l~~Rl~~R~~~~~~~~~~~~~~~~ 203 (230)
. ..+.. ..+..+|+|+...+..+...+.+. +...++|.+.|+ ++++.+|+..|..... .|. +
T Consensus 108 ~~~~~~L~~---~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rP---dl~----~ 177 (520)
T 2axn_A 108 RDVKSYLAK---EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSP---DYK----D 177 (520)
T ss_dssp HHHHHHHHH---SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSG---GGT----T
T ss_pred HHHHHHHHh---cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCC---ccc----c
Confidence 1 22211 236789999999888877665432 223456677777 7888888877664210 110 0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhhh
Q 026951 204 FSAADAASAWKEKFRIYAEQINLTI 228 (230)
Q Consensus 204 ~~~dd~~~~~~~rl~~y~~~~~~~i 228 (230)
...++..+.+.+|+..|.....|+.
T Consensus 178 ~d~e~~~~~~~~Ri~~y~~~Yepi~ 202 (520)
T 2axn_A 178 CNSAEAMDDFMKRISCYEASYQPLD 202 (520)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCHHHHHHHHHHHHHhhhhhhcccC
Confidence 0112234567899999999888875
No 76
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.15 E-value=7.4e-11 Score=94.27 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
+.|+|+|+|||||||+++.|++.++..++.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 369999999999999999999999986664
No 77
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.14 E-value=9.8e-11 Score=95.11 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~ 101 (230)
+..|+|+|++||||||+++.|++.+|+++++.|++.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 467999999999999999999999999999999998863
No 78
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.08 E-value=2.8e-10 Score=93.25 Aligned_cols=115 Identities=15% Similarity=0.104 Sum_probs=76.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCC-CCCHHHH-----------HH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGK-LVPEDVI-----------FA 129 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~-~v~de~~-----------~~ 129 (230)
+++.|+|.|++||||||+++.|++.++.... +++ +...+++.|+.|++++.+.. ...+... .+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~----~~~-ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK----LLK-FPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEE----EEE-SSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccce----EEE-ecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999986321 122 11246889999999987654 2333221 11
Q ss_pred HHHHHHHhccccCCCeEEEeCccCC--HHH---------HHHHhcc----CCcCEEEEE-ecCHHHHHHHHhc
Q 026951 130 LLSKRLEEGYYRGESGFILDGIPRT--RIQ---------AEILDQI----VDVDLVINF-KSIEDQLVKRNLE 186 (230)
Q Consensus 130 ll~~~l~~~~~~~~~~~IlDg~p~~--~~q---------a~~l~~~----~~~d~vI~L-~~~~e~l~~Rl~~ 186 (230)
.+.+.+. .+..+|.|.|..+ ..| .+++.++ ..||++|+| ++|++++.+|+..
T Consensus 79 ~I~paL~-----~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~ 146 (216)
T 3tmk_A 79 KIKKDLL-----EGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGF 146 (216)
T ss_dssp HHHHHHH-----TTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSS
T ss_pred HHHHHHH-----cCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhcc
Confidence 2222233 2577888977544 112 1223322 369999999 9999999988754
No 79
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.07 E-value=7.1e-10 Score=87.87 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=63.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHH---HHHHH--
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPED---VIFAL-- 130 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de---~~~~l-- 130 (230)
.++..|+|+|+|||||||+++.|++.++ +.+++.+. ++..+..+. ...+.+ .+..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~-~~~~~~~~~-------------~~~~~~r~~~~~~~~~ 76 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW-ARTTVSEGA-------------GFTREERLRHLKRIAW 76 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHTTTTTTC-------------CCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH-HHHHHhhcc-------------CCChhhHHHHHHHHHH
Confidence 4678999999999999999999999874 34455544 444322110 011111 11111
Q ss_pred HHHHHHhccccCCCeEEEeCccCCHHHHHHHh----ccCCcCEEEEEecCHHHHHHHHh
Q 026951 131 LSKRLEEGYYRGESGFILDGIPRTRIQAEILD----QIVDVDLVINFKSIEDQLVKRNL 185 (230)
Q Consensus 131 l~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~ 185 (230)
+...+. ..+..+|+|+........+.+. ....++.+|+|++|++++.+|+.
T Consensus 77 ~~~~~~----~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~ 131 (186)
T 2yvu_A 77 IARLLA----RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDP 131 (186)
T ss_dssp HHHHHH----TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCH
T ss_pred HHHHHH----hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhh
Confidence 111111 1245667788654433333332 22357899999999999999974
No 80
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.04 E-value=1.4e-09 Score=88.02 Aligned_cols=109 Identities=15% Similarity=0.064 Sum_probs=63.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC------CCccchhHHHHHHcCCCChHH-HHHHHHHHCCCCCCHHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLVRQELSPRSALY-KQIANAVNEGKLVPEDVIFALLSK 133 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~------~~~is~~dll~~~~~~~~~~~-~~i~~~l~~g~~v~de~~~~ll~~ 133 (230)
.++..|+|+|+|||||||+++.|++.++ +.+++.+. ++..+....... ..-...+ +.+...+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~-~r~~l~~~~~~~~~~r~~~~--------~~~~~~~~~ 93 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN-IRFGLNKDLGFSEADRNENI--------RRIAEVAKL 93 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH-HTTTTTTTCCSSHHHHHHHH--------HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH-HhhhhccccCCCHHHHHHHH--------HHHHHHHHH
Confidence 4678999999999999999999999876 66777544 443332110000 0000000 011122223
Q ss_pred HHHhccccCCCeEEEeCccCC-HHHHHHHhc----------cCCcCEEEEEecCHHHHHHHH
Q 026951 134 RLEEGYYRGESGFILDGIPRT-RIQAEILDQ----------IVDVDLVINFKSIEDQLVKRN 184 (230)
Q Consensus 134 ~l~~~~~~~~~~~IlDg~p~~-~~qa~~l~~----------~~~~d~vI~L~~~~e~l~~Rl 184 (230)
.+.. +..+|+| ++.. ....+.+.+ ...|+++|+|++|++++.+|+
T Consensus 94 ~l~~-----g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 94 FADS-----NSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHT-----TCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHC-----CCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 3332 5678888 4421 122333332 125689999999999999994
No 81
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.03 E-value=1.5e-09 Score=85.40 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=62.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCccchh-HHHHHHcCCCChHHHHHHHHHHCCCCCC---HHHHHHHHH-
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMG-SLVRQELSPRSALYKQIANAVNEGKLVP---EDVIFALLS- 132 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~---~~~~is~~-dll~~~~~~~~~~~~~i~~~l~~g~~v~---de~~~~ll~- 132 (230)
.++..|+|+|++||||||+++.|++.+ |++++.++ +.++..+.... ...+ ++.+.++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 69 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNL-------------GFSPEDREENVRRIAEV 69 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTC-------------CSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcc-------------ccccccHHHHHHHHHHH
Confidence 367889999999999999999999988 88887654 33433221100 0110 112222211
Q ss_pred -HHHHhccccCCCeEEEeCccCC-HHHHHH---H-hccCCcCEEEEEecCHHHHHHHHhcC
Q 026951 133 -KRLEEGYYRGESGFILDGIPRT-RIQAEI---L-DQIVDVDLVINFKSIEDQLVKRNLES 187 (230)
Q Consensus 133 -~~l~~~~~~~~~~~IlDg~p~~-~~qa~~---l-~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (230)
..+.. .+ .+++.++... ..+... + .....++.+|+|++|++++.+|+.+|
T Consensus 70 ~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 70 AKLFAD----AG-LVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HHHHHH----TT-CEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred HHHHHH----CC-CEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 11222 12 3444443322 111222 2 22346789999999999999998654
No 82
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.02 E-value=1.1e-09 Score=88.64 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=66.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCC-CChHHHHHHHHHHCCC-CC------------CHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSP-RSALYKQIANAVNEGK-LV------------PEDVIF 128 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~-~~~~~~~i~~~l~~g~-~v------------~de~~~ 128 (230)
.+.|.|.|++||||||+++.||+++|+++++ +++++..... +-+. ..+..+-.... .. ..+.+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 4579999999999999999999999999999 8888754221 1110 11111000000 00 011112
Q ss_pred HHHHHHHHhcccc--CCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcC
Q 026951 129 ALLSKRLEEGYYR--GESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLES 187 (230)
Q Consensus 129 ~ll~~~l~~~~~~--~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (230)
....+.+.+. . ...++|++|.--+ ..|... .-.++|+|++|.+++.+|+.++
T Consensus 84 ~~~~~~i~~l--a~~~~~~~Vi~Gr~g~----~vl~~~-~~~~~V~L~A~~e~r~~R~~~~ 137 (201)
T 3fdi_A 84 IRQFNFIRKK--ANEEKESFVIVGRCAE----EILSDN-PNMISAFILGDKDTKTKRVMER 137 (201)
T ss_dssp HHHHHHHHHH--HHTSCCCEEEESTTHH----HHTTTC-TTEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HhhcCCCEEEEECCcc----hhcCCC-CCeEEEEEECCHHHHHHHHHHH
Confidence 2223333222 1 2467889875211 122221 1248999999999999999875
No 83
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.01 E-value=1.5e-09 Score=90.59 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=36.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ 100 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~ 100 (230)
.++.+|.|+|++||||||+++.|++++|+.+++.+.+.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 3567899999999999999999999999999999999854
No 84
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.95 E-value=1.6e-09 Score=87.27 Aligned_cols=120 Identities=15% Similarity=0.076 Sum_probs=72.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-CCCccchhHHHHHHcCCCChHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-EVPHISMGSLVRQELSPRSALYKQIANAVNEG---KLVPEDVIFALLSKRLE 136 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~-~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g---~~v~de~~~~ll~~~l~ 136 (230)
.++..|+|+|+|||||||+++.|++.+ ++.+++.|++++...... .+ ...+... ..+....+...+...+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~l~~~i~~~l~ 93 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIE--TD---KNGFLQYDVLEALNMEKMMSAISCWME 93 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSC--BC---TTSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhh--cc---ccCCChhHHHHHhHHHHHHHHHHHHHh
Confidence 467889999999999999999999988 899999998764321100 00 0000000 00112223333333332
Q ss_pred hcc----------ccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 137 EGY----------YRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 137 ~~~----------~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
... ......+|+||++.... +.+. ..+|.+|++++|++++.+|+..|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~vi~eg~~~~~~--~~~~--~~~d~~i~l~~~~~~~~~R~~~R~~ 152 (207)
T 2qt1_A 94 SARHSVVSTDQESAEEIPILIIEGFLLFNY--KPLD--TIWNRSYFLTIPYEECKRRRSTRVY 152 (207)
T ss_dssp HHTTSSCCC-----CCCCEEEEECTTCTTC--GGGT--TTCSEEEEEECCHHHHHHHHHHSCC
T ss_pred CCCCCCcCCCeeecCCCCEEEEeehHHcCc--HHHH--HhcCeeEEEECCHHHHHHHHHHcCC
Confidence 210 01245789999653311 1111 3578999999999999999988853
No 85
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.95 E-value=7.9e-09 Score=84.98 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=66.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcC-CCCh------HHHHHHH-----HHHC-----------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELS-PRSA------LYKQIAN-----AVNE----------- 118 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~-~~~~------~~~~i~~-----~l~~----------- 118 (230)
+.++|.|.|++||||||+++.||+++|+++++ ++++++... .+-+ .++.... ++..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC------------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccccccc
Confidence 35789999999999999999999999999999 666665432 1111 1111000 0000
Q ss_pred -CCCCCHHHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHH---hccCCcCEEEEEecCHHHHHHHHhcC
Q 026951 119 -GKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEIL---DQIVDVDLVINFKSIEDQLVKRNLES 187 (230)
Q Consensus 119 -g~~v~de~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l---~~~~~~d~vI~L~~~~e~l~~Rl~~R 187 (230)
.....++.+.....+.+.+. ....++|++|.--. ..+ ... .-.++|+|++|.+++.+|+.++
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~l--a~~~~~Vi~Grggg----~vl~~~~~~-~~~~~VfL~A~~e~r~~Ri~~~ 157 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMREL--AESEPCIFVGRAAG----YVLDQDEDI-ERLIRIFVYTDKVKKVQRVMEV 157 (223)
T ss_dssp ------HHHHHHHHHHHHHHH--HHHSCEEEESTTHH----HHHHHCTTC-CEEEEEEEECCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHH--HhCCCEEEEeCCcc----hhcccccCC-CCeEEEEEECCHHHHHHHHHHh
Confidence 01111222333333333332 11357888765211 122 221 2257999999999999999876
No 86
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.91 E-value=1.2e-08 Score=84.51 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=36.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQE 101 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~ 101 (230)
.+++.|+|.|||||||||+++.|++.+|+.+++.+++.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~ 47 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA 47 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence 35678999999999999999999999999999999997764
No 87
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.91 E-value=9.9e-09 Score=82.34 Aligned_cols=105 Identities=12% Similarity=0.046 Sum_probs=64.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC--ccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHH----H--
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIF----A-- 129 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~---~~~--~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~----~-- 129 (230)
.++..|+|+|++||||||+++.|++.+ |.. +++.+++.. .+.. +....++... .
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~-~~~~--------------~~~~~~~~~~~~~~~~~ 87 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH-GLNR--------------DLSFKAEDRAENIRRVG 87 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTT--------------TCCSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh-Hhhc--------------ccCcChHHHHHHHHHHH
Confidence 367889999999999999999999988 655 777665432 2111 1111111111 1
Q ss_pred HHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCC--cCEEEEEecCHHHHHHHH
Q 026951 130 LLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVD--VDLVINFKSIEDQLVKRN 184 (230)
Q Consensus 130 ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~--~d~vI~L~~~~e~l~~Rl 184 (230)
.+...+.. .+..+|++.........+.+.+... ...+|+|++|.+++.+|+
T Consensus 88 ~~~~~~~~----~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 88 EVAKLFAD----AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHHHHHHH----TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred HHHHHHHh----CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 11111222 2456676654444455555554432 335799999999999997
No 88
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.89 E-value=9.1e-09 Score=96.23 Aligned_cols=111 Identities=15% Similarity=0.089 Sum_probs=64.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCCccchh-HHHHHHcCCCChHH-HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVPHISMG-SLVRQELSPRSALY-KQIANAVNEGKLVPEDVIFALLSKRL 135 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~---~~~~is~~-dll~~~~~~~~~~~-~~i~~~l~~g~~v~de~~~~ll~~~l 135 (230)
.++..|+|+|+|||||||+++.|++.+ |++++.++ |.++..+....... ..-.+.+ +.+..++...+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~--------r~i~eva~~~l 121 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV--------RRIAEVAKLFA 121 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH--------HHHHHHHHHHH
Confidence 378899999999999999999999998 98887774 55654332211000 0000000 01112222222
Q ss_pred HhccccCCCeEEEeC-ccCCHHHHHHH----hccCCcCEEEEEecCHHHHHHHHh
Q 026951 136 EEGYYRGESGFILDG-IPRTRIQAEIL----DQIVDVDLVINFKSIEDQLVKRNL 185 (230)
Q Consensus 136 ~~~~~~~~~~~IlDg-~p~~~~qa~~l----~~~~~~d~vI~L~~~~e~l~~Rl~ 185 (230)
. .+..+|.|. .|. ....+.+ .....++++|+|++|.+++.+|+.
T Consensus 122 ~-----~G~iVI~d~~s~~-~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~ 170 (630)
T 1x6v_B 122 D-----AGLVCITSFISPY-TQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV 170 (630)
T ss_dssp H-----TTCEEEEECCCCC-HHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCT
T ss_pred h-----CCCEEEEeCchhh-HHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhc
Confidence 2 134455552 222 1122222 233456889999999999999976
No 89
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.87 E-value=3.1e-09 Score=88.84 Aligned_cols=123 Identities=12% Similarity=0.151 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHH-HcC--CCChHHHHH---HHH-HHCC----CCCCHHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQ-ELS--PRSALYKQI---ANA-VNEG----KLVPEDVIFALLS 132 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~-~~~--~~~~~~~~i---~~~-l~~g----~~v~de~~~~ll~ 132 (230)
..|+|+|||||||||+|+.|++.+++.+++.|++... ... ...+..... ... +... ..+......+.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 4789999999999999999999999999999876421 110 000000000 000 0000 0123344444455
Q ss_pred HHHHhccccCCCeEEEeCccCCHHHHHHHhc--c-CCc-CEEEEEecCH-HHHHHHHhcCCC
Q 026951 133 KRLEEGYYRGESGFILDGIPRTRIQAEILDQ--I-VDV-DLVINFKSIE-DQLVKRNLESEA 189 (230)
Q Consensus 133 ~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~--~-~~~-d~vI~L~~~~-e~l~~Rl~~R~~ 189 (230)
..+ +.. ..+..+|++|-..... ...+.. + ... -.+|+|++|. +++.+|+.+|..
T Consensus 82 ~~i-~~~-~~g~~vIl~gg~~~~~-~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~ 140 (253)
T 2ze6_A 82 FEV-DWR-KSEEGLILEGGSISLL-NCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVA 140 (253)
T ss_dssp HHH-HTT-TTSSEEEEEECCHHHH-HHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHH-HHH-hCCCCeEEeccHHHHH-HHHHhcccccccCceEEEEecchhHHHHHHHHHHHHH
Confidence 555 321 2356778875432211 122333 1 122 2699999997 999999998853
No 90
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.87 E-value=1.4e-10 Score=93.62 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=64.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChH-HHHHHHHHHC--CCCCCHHHHHHHHH--------H
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSAL-YKQIANAVNE--GKLVPEDVIFALLS--------K 133 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~-~~~i~~~l~~--g~~v~de~~~~ll~--------~ 133 (230)
.|+|.|++||||||+++.|++.++...+++. +++. ...+++. +..++..+.. +...++.....++. .
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 79 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-TLAF-PRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVH 79 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-EEES-SEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-EEee-cCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHH
Confidence 6899999999999999999998853222211 0000 0000111 1222222211 10111111111110 1
Q ss_pred HHHhccccCCCeEEEeCccCCH--HHH------------HHHhc-------cCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 134 RLEEGYYRGESGFILDGIPRTR--IQA------------EILDQ-------IVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 134 ~l~~~~~~~~~~~IlDg~p~~~--~qa------------~~l~~-------~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
.+.... ..+..+|+|+++.+. .|. +++.. ...+|.+|+|++|++++.+|+.+|..
T Consensus 80 ~i~~~l-~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~ 155 (214)
T 1gtv_A 80 TIQGLC-RGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQ 155 (214)
T ss_dssp HHHHEE-EEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccc
Confidence 122211 225678899998653 221 12222 12689999999999999999999864
No 91
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.84 E-value=1.6e-09 Score=90.76 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=28.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-CCCccc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-EVPHIS 93 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~-~~~~is 93 (230)
.+++.|+|.|++||||||+++.|++.+ ++.++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 477899999999999999999999998 565553
No 92
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.82 E-value=1e-08 Score=82.06 Aligned_cols=132 Identities=12% Similarity=0.111 Sum_probs=76.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHhC-CCccchhHHHHHHcCCCCh--------HHHHHHHHHHCCCCCCHH--------HHH
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLE-VPHISMGSLVRQELSPRSA--------LYKQIANAVNEGKLVPED--------VIF 128 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~-~~~is~~dll~~~~~~~~~--------~~~~i~~~l~~g~~v~de--------~~~ 128 (230)
|+|+||+||||||+++.|.+.+. ...+++...-|.- .++.. -.+...+.+.+|..+.-. +..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p-R~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP-RAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC-CCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 89999999999999999988763 2222222111110 01100 113455556666543210 122
Q ss_pred HHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccC--CcCEEEEEecCHHHHHHHHhcCCCCCCccchhccCCCCCCC
Q 026951 129 ALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFKSIEDQLVKRNLESEAFSPHKEFLRLGGARFSA 206 (230)
Q Consensus 129 ~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~--~~d~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~~~~ 206 (230)
..+...+.+ +..+|+|.-+. -+..+.... .+..|+.+-.+.+++.+|+.+|+.
T Consensus 83 ~~v~~~l~~-----g~~vil~id~~---g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~----------------- 137 (186)
T 1ex7_A 83 ASVKQVSKS-----GKTCILDIDMQ---GVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT----------------- 137 (186)
T ss_dssp HHHHHHHHH-----TSEEEEECCHH---HHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC-----------------
T ss_pred ceeeehhhC-----CCEEEecCCHH---HHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC-----------------
Confidence 334444554 67899996443 333444332 233344445556999999999985
Q ss_pred CCcHHHHHHHHHHHHHhh
Q 026951 207 ADAASAWKEKFRIYAEQI 224 (230)
Q Consensus 207 dd~~~~~~~rl~~y~~~~ 224 (230)
|+++.+++||.....+.
T Consensus 138 -e~~e~i~~Rl~~a~~e~ 154 (186)
T 1ex7_A 138 -ETEESINKRLSAAQAEL 154 (186)
T ss_dssp -SCHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 35678899988776543
No 93
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.78 E-value=2.1e-08 Score=81.07 Aligned_cols=28 Identities=36% Similarity=0.393 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.++..|+|+||+||||||+++.|++.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3677899999999999999999998874
No 94
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.77 E-value=9.5e-08 Score=76.22 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
++..++|+||+||||||+++.|+..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 567899999999999999999998764
No 95
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.75 E-value=1.8e-08 Score=85.99 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVR 99 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~ 99 (230)
++..|.|.|++||||||+|+.|++.++ +.+|++|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 567899999999999999999999887 78889887764
No 96
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.75 E-value=1.2e-07 Score=85.99 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=82.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCc-----cchhHHHHHHcCCCChHHHHHHHHHHCCCC----CCHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPH-----ISMGSLVRQELSPRSALYKQIANAVNEGKL----VPEDVIFALL 131 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~-----is~~dll~~~~~~~~~~~~~i~~~l~~g~~----v~de~~~~ll 131 (230)
.++.+|+|+|.|||||||+++.|++.++..+ ++.+++.++........ +++..... .-.......+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~-----~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSF-----EFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCG-----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcc-----cccCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999876444 44444444322110000 00000000 0001111112
Q ss_pred ---HHHHHhccccCCCeEEEeCccCCHHHHHHHhccC--CcCEEEEEe---cCHHHHHHHHhcCCCCCCccchhccCCCC
Q 026951 132 ---SKRLEEGYYRGESGFILDGIPRTRIQAEILDQIV--DVDLVINFK---SIEDQLVKRNLESEAFSPHKEFLRLGGAR 203 (230)
Q Consensus 132 ---~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~--~~d~vI~L~---~~~e~l~~Rl~~R~~~~~~~~~~~~~~~~ 203 (230)
...+.. .++..+|+|....+..+...+.+.. .-..+++|+ .+++++.+|+..+..... .|. .
T Consensus 112 ~~~~~~l~~---~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp---~~~----~ 181 (469)
T 1bif_A 112 NDVRKFLSE---EGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSP---DYV----N 181 (469)
T ss_dssp HHHHHHHHT---TCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTST---TTT----T
T ss_pred HHHHHHHHh---CCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCC---ccc----C
Confidence 222322 3466899999888887766653221 111356666 447888888875442110 000 0
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhh
Q 026951 204 FSAADAASAWKEKFRIYAEQINLT 227 (230)
Q Consensus 204 ~~~dd~~~~~~~rl~~y~~~~~~~ 227 (230)
...++..+.+.+|+..|....+|+
T Consensus 182 ~~~e~~~~~~~~R~~~y~~~ye~l 205 (469)
T 1bif_A 182 RDSDEATEDFMRRIECYENSYESL 205 (469)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHHHHHHhccEeEEC
Confidence 011223467888999998888776
No 97
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.71 E-value=8.8e-08 Score=88.51 Aligned_cols=111 Identities=16% Similarity=0.148 Sum_probs=66.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHHHHHHcCCCChHHH-HHHHHHHCCCCCCHHHHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSLVRQELSPRSALYK-QIANAVNEGKLVPEDVIFALLSKRL 135 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dll~~~~~~~~~~~~-~i~~~l~~g~~v~de~~~~ll~~~l 135 (230)
++..|+|+|+|||||||+|+.|++.++ +.+++.| .+++.+..+..... .....+ +.+..++...+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D-~ir~~l~~~~~f~~~er~~~l--------~~i~~~~~~~l 441 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD-VVRTHLSRGLGFSKEDRITNI--------LRVGFVASEIV 441 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH-HHHHHTCTTCCSSHHHHHHHH--------HHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch-HhhhhhcccccccHHHHHHHH--------HHHHHHHHHHH
Confidence 467899999999999999999999876 3566665 45554432211100 000000 01111222222
Q ss_pred HhccccCCCeEEEeCccCCHHHHHHHhcc-CCcC-EEEEEecCHHHHHHHHhc
Q 026951 136 EEGYYRGESGFILDGIPRTRIQAEILDQI-VDVD-LVINFKSIEDQLVKRNLE 186 (230)
Q Consensus 136 ~~~~~~~~~~~IlDg~p~~~~qa~~l~~~-~~~d-~vI~L~~~~e~l~~Rl~~ 186 (230)
. .+.++|+|+..........+.++ ..++ .+|+|++|.+++.+|+..
T Consensus 442 ~-----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r 489 (546)
T 2gks_A 442 K-----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVK 489 (546)
T ss_dssp H-----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCS
T ss_pred h-----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhc
Confidence 2 26789999644333333344433 2356 899999999999999863
No 98
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.66 E-value=9.7e-09 Score=82.11 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++..|+|+|++||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999998876
No 99
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.62 E-value=7.7e-08 Score=83.58 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEV 89 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~ 89 (230)
.+++.|+|.|+.||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46789999999999999999999998854
No 100
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.60 E-value=2.1e-07 Score=73.50 Aligned_cols=117 Identities=16% Similarity=0.088 Sum_probs=64.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcccc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYR 141 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~-~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~ 141 (230)
+..++|+|++||||||+++.|++.++. .+++.+++.+. ...+... +.. ...+.....+.+....... ..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~-~~~~~~~-~~~-------~~~~~~~~~~~l~~~~~~~-~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM-VVGGYRP-PWE-------SDELLALTWKNITDLTVNF-LL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT-CCTTCCC-GGG-------CHHHHHHHHHHHHHHHHHH-HH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh-hcccccc-Ccc-------chhHHHHHHHHHHHHHHHH-Hh
Confidence 457899999999999999999987764 67777665432 1110000 000 0000111222222111110 01
Q ss_pred CCCeEEEeCccCCHHHHHHHhcc----C-C-cCEEEEEecCHHHHHHHHhcCCCC
Q 026951 142 GESGFILDGIPRTRIQAEILDQI----V-D-VDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 142 ~~~~~IlDg~p~~~~qa~~l~~~----~-~-~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
.+..+|+|++- .......+... . . .-.+++|.++.+++.+|+..|..+
T Consensus 72 ~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d 125 (189)
T 2bdt_A 72 AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD 125 (189)
T ss_dssp TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-
T ss_pred cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc
Confidence 24578999852 22222222221 1 1 334788999999999999988653
No 101
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.58 E-value=4.6e-07 Score=71.42 Aligned_cols=115 Identities=20% Similarity=0.237 Sum_probs=66.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC--ccchhHHHHHHcCCCChHHHHHHHHHHCCCCCC-----HHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP--HISMGSLVRQELSPRSALYKQIANAVNEGKLVP-----EDVIFALLSK 133 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~--~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~-----de~~~~ll~~ 133 (230)
.++..|+|+|+|||||||+++.|+..++.. +++.+++.... ...... .+++ ...+.+.+..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~-----------~~~~~~~~~~~~v~~~l~~ 74 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRID-----------PWLPQSHQQNRMIMQIAAD 74 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCC-----------TTSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hccccc-----------CCccchhhhhHHHHHHHHH
Confidence 467889999999999999999999876554 67777765432 110000 0111 1122222211
Q ss_pred HHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCCC
Q 026951 134 RLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESEA 189 (230)
Q Consensus 134 ~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~~ 189 (230)
..... ...+..+++|++.... +...+......-.++++.++.+++..|+..|..
T Consensus 75 ~~~~~-~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~ 128 (191)
T 1zp6_A 75 VAGRY-AKEGYFVILDGVVRPD-WLPAFTALARPLHYIVLRTTAAEAIERCLDRGG 128 (191)
T ss_dssp HHHHH-HHTSCEEEECSCCCTT-TTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCT
T ss_pred HHHHH-hccCCeEEEeccCcHH-HHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCC
Confidence 11110 0124567889865432 222233222223589999999999999998853
No 102
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.57 E-value=6.9e-08 Score=76.54 Aligned_cols=118 Identities=12% Similarity=0.008 Sum_probs=48.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC----CCccchhHHHHHHcCCCC----hHHHHHHHHHHCCCCCCH--------HHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLE----VPHISMGSLVRQELSPRS----ALYKQIANAVNEGKLVPE--------DVI 127 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~----~~~is~~dll~~~~~~~~----~~~~~i~~~l~~g~~v~d--------e~~ 127 (230)
..++|+||+||||||+++.|+..+. .........-+.....+. .........+.++..+.. .+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~~ 81 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccCc
Confidence 4589999999999999999987653 111000000000000000 001122222222222110 000
Q ss_pred HHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhc-cCCcCEEEEEecCH-HHHHHHHhcCCC
Q 026951 128 FALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQ-IVDVDLVINFKSIE-DQLVKRNLESEA 189 (230)
Q Consensus 128 ~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~-~~~~d~vI~L~~~~-e~l~~Rl~~R~~ 189 (230)
...+...+.. +..+|+|.. ...+..+.. ...-..+|++.+|. +++.+|+.+|..
T Consensus 82 ~~~i~~~l~~-----g~~~il~~~---~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~ 137 (186)
T 3a00_A 82 VASVKQVSKS-----GKTCILDID---MQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT 137 (186)
T ss_dssp HHHHHHHHHT-----TCEEEEECC---HHHHHHHHTCGGGCCEEEEEECSCC------------
T ss_pred HHHHHHHHHc-----CCeEEEEEc---HHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCC
Confidence 1223333443 577888843 333444444 32234578888876 999999999875
No 103
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.56 E-value=4.2e-07 Score=84.41 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=61.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC----CC--ccchhHHHHHHcCCCChHHH-HHHHHHHCCCCCCHHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE----VP--HISMGSLVRQELSPRSALYK-QIANAVNEGKLVPEDVIFALLSK 133 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~----~~--~is~~dll~~~~~~~~~~~~-~i~~~l~~g~~v~de~~~~ll~~ 133 (230)
.++..|+|+|+|||||||+|+.|++.++ .+ +++. |.++..+..+..... .-...+ ..+..++..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l~~~~~f~~~er~~~i--------~ri~~v~~~ 464 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHELSSELGFTREDRHTNI--------QRIAFVATE 464 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHTCTTCCCSHHHHHHHH--------HHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHhccccCCChhHHHHHH--------HHHHHHHHH
Confidence 3568899999999999999999999876 43 4444 445554332110000 000000 011122222
Q ss_pred HHHhccccCCCeEEEeCccCCHHHHHHHhcc---CCcCEEEEEecCHHHHHHHHh
Q 026951 134 RLEEGYYRGESGFILDGIPRTRIQAEILDQI---VDVDLVINFKSIEDQLVKRNL 185 (230)
Q Consensus 134 ~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~---~~~d~vI~L~~~~e~l~~Rl~ 185 (230)
.... +..+|+|.........+.+.++ ...+.+|+|++|.+++.+|..
T Consensus 465 ~~~~-----g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~ 514 (573)
T 1m8p_A 465 LTRA-----GAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 514 (573)
T ss_dssp HHHT-----TCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCS
T ss_pred HHhC-----CCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhc
Confidence 2222 4566776432122222222221 134589999999999999964
No 104
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.56 E-value=1.4e-06 Score=70.35 Aligned_cols=152 Identities=9% Similarity=0.071 Sum_probs=88.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHHHHHcC--CCC---h-----------------HHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELS--PRS---A-----------------LYKQIANAV 116 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~---~~~is~~dll~~~~~--~~~---~-----------------~~~~i~~~l 116 (230)
..++|+|+|.|||||+|+|+.+.+.+| ++.++++|.+++... .+- . ++..+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~-- 87 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQ-- 87 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHH--
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHh--
Confidence 556899999999999999999988784 778999999985332 110 0 1111111
Q ss_pred HCCCCCCHHHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCc-CEEEEEecCHHHHHHHHhcCCCCCC-cc
Q 026951 117 NEGKLVPEDVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDV-DLVINFKSIEDQLVKRNLESEAFSP-HK 194 (230)
Q Consensus 117 ~~g~~v~de~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~-d~vI~L~~~~e~l~~Rl~~R~~~~~-~~ 194 (230)
.+.. .+.+++ +.. .....|||||. |.....+.|.+.... -.+|.+.+++++..+|...+....+ ..
T Consensus 88 -~d~~----~~~~~~---~~~---~~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~Dd~e 155 (202)
T 3ch4_B 88 -ADPG----FFCRKI---VEG---ISQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAE 155 (202)
T ss_dssp -HCTT----TTHHHH---SBT---CCCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTTTTSH
T ss_pred -cCch----HHHHHH---HHh---cCCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhccccccccc
Confidence 0000 111111 111 12347899987 888888888764322 3589999999999999543322110 00
Q ss_pred chhccCCC-CC----CCCCcHHHHHHHHHHHHHhhhhh
Q 026951 195 EFLRLGGA-RF----SAADAASAWKEKFRIYAEQINLT 227 (230)
Q Consensus 195 ~~~~~~~~-~~----~~dd~~~~~~~rl~~y~~~~~~~ 227 (230)
-.+.+..- .+ ..|.+.+.+++++...-..++..
T Consensus 156 sE~gL~~~~~~D~vI~Ndgt~eel~~~v~~ll~~~~~~ 193 (202)
T 3ch4_B 156 SECGLDNFGDFDWVIENHGVEQRLEEQLENLIEFIRSR 193 (202)
T ss_dssp HHHTTTTCCCCSEEEEECSCHHHHHHHHHHHHHHHHTT
T ss_pred cccCCCCCCcCCEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 01111110 11 12446777888887766665543
No 105
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.54 E-value=1.1e-07 Score=78.30 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EV 89 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~-~~ 89 (230)
+|+.|+|.|++||||||+++.|++.+ ++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 46789999999999999999999998 44
No 106
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.51 E-value=1.2e-07 Score=82.38 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dl 97 (230)
.++..|+|+||+||||||++..||++++..+||+|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3567899999999999999999999999999998865
No 107
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.51 E-value=9.8e-08 Score=76.63 Aligned_cols=118 Identities=13% Similarity=0.105 Sum_probs=53.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---CCC--ccchhHHHHH---HcCCCChHHHHHHHHHHCCCCCCHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---EVP--HISMGSLVRQ---ELSPRSALYKQIANAVNEGKLVPEDVIFALLS 132 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~---~~~--~is~~dll~~---~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~ 132 (230)
.++..|.|+|++||||||+++.|+..+ +.. +++.+...+. ....+...+..+ +. ..+.-+.+.+.+-
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~---~~--~~~d~~~l~~~v~ 94 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEY---YY--LQWDVEWLTHQLF 94 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHH---HH--TSSCHHHHHHHTG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCC---Cc--cccCHHHHHHHHH
Confidence 477899999999999999999999865 433 3344433221 111222222111 11 1122222222211
Q ss_pred HHHHh--------------------ccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 133 KRLEE--------------------GYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 133 ~~l~~--------------------~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
..+.. .....+..+|+||...... .+. ..+|.+|++++|.+++.+|+.+|.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~--~~~d~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 95 RQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRK---EWR--PFFDFVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp GGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTST---TTG--GGCSEEEEECCC------------
T ss_pred HHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccH---HHH--hhcCEEEEEeCCHHHHHHHHhcCC
Confidence 11100 0012245688888543211 111 136899999999999999999986
No 108
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.41 E-value=7.7e-07 Score=72.89 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++..|+|.|+.||||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 47889999999999999999999876
No 109
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.34 E-value=7.1e-07 Score=71.63 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC--CCccchhHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISMGSLV 98 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~--~~~is~~dll 98 (230)
++..|.|+|++||||||+++.|+..++ +.+++.+..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 567899999999999999999999888 8888776543
No 110
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.30 E-value=2.1e-06 Score=74.38 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
+++.|+|.|+.||||||+++.|++.++
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 568899999999999999999998774
No 111
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.29 E-value=3.9e-06 Score=72.96 Aligned_cols=29 Identities=21% Similarity=0.135 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCChhHHH-HHHHHHhCC
Q 026951 61 RRGVQWVLIGDPGVKKHVYA-DNLSKLLEV 89 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a-~~La~~~~~ 89 (230)
.+++.|+|.|+.||||||++ +.|++.++-
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 46789999999999999999 999988763
No 112
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.29 E-value=1.9e-05 Score=69.38 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.+++.|+|.|+.||||||+++.|++.++
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4778999999999999999999998874
No 113
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.26 E-value=2.4e-06 Score=69.74 Aligned_cols=27 Identities=33% Similarity=0.310 Sum_probs=18.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH-HHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLS-KLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La-~~~ 87 (230)
.++..++|+||+||||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 366789999999999999999999 655
No 114
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.23 E-value=2.7e-07 Score=79.77 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGS 96 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~-------~~~is~~d 96 (230)
.++.+|.|+||+||||||+++.|+..++ +..+++|+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 5778999999999999999999988765 33466654
No 115
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.22 E-value=9.9e-07 Score=71.00 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGS 96 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~d 96 (230)
.++..|.|+|++||||||+++.|+..+. ..+++.++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 5788999999999999999999998774 44555543
No 116
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.21 E-value=4.7e-05 Score=62.66 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
.++.+|.|+||+||||||+++.|+..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 477889999999999999999999988865
No 117
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.13 E-value=2.2e-06 Score=73.40 Aligned_cols=36 Identities=28% Similarity=0.228 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC-------CCccchhH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE-------VPHISMGS 96 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~-------~~~is~~d 96 (230)
.++..|.|+|++||||||+++.|+..++ +.++++++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 4778999999999999999999998776 45555554
No 118
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.06 E-value=1.2e-06 Score=75.75 Aligned_cols=36 Identities=25% Similarity=0.169 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dl 97 (230)
++..|+|+||+||||||++..|++.++..+|++|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 456899999999999999999999999999998765
No 119
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.94 E-value=1.3e-05 Score=73.97 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC------CCccchhHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE------VPHISMGSLV 98 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~------~~~is~~dll 98 (230)
.++..|+|+|++||||||+++.|+..++ +.+++.+++.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 3678899999999999999999999874 3456666554
No 120
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.86 E-value=0.00055 Score=53.08 Aligned_cols=107 Identities=19% Similarity=0.134 Sum_probs=60.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVI----FALLSKRLEE 137 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~----~~ll~~~l~~ 137 (230)
++-.++|+|++||||||+++.+. .+...++.+ .++..+.+.. +........ .......+..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d-~~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 72 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSD-FCRGLMSDDE------------NDQTVTGAAFDVLHYIVSKRLQL 72 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHH-HHHHHHCSST------------TCGGGHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccH-HHHHHhcCcc------------cchhhHHHHHHHHHHHHHHHHhC
Confidence 67789999999999999999754 234445443 3333332211 111111111 1112222222
Q ss_pred ccccCCCeEEEeCccCCH---HHHHHHhc-cCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 138 GYYRGESGFILDGIPRTR---IQAEILDQ-IVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 138 ~~~~~~~~~IlDg~p~~~---~qa~~l~~-~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+...++|..+... .|...+.. +...-.+++||-|...+-.+...|.
T Consensus 73 -----g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 73 -----GKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp -----TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred -----CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 4567777654442 22223332 2333358999999999999988775
No 121
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.85 E-value=5e-06 Score=72.28 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dl 97 (230)
+..|+|+||+||||||+|..|++.++..+|++|++
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 35899999999999999999999999988988875
No 122
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.82 E-value=0.00027 Score=57.50 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.++..++|+||+||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4778899999999999999999988654
No 123
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.82 E-value=1.1e-05 Score=68.43 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLV 98 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~--~dll 98 (230)
..+..++|.||||+|||++|+.+|+.++.+++.+ +++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~ 73 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE 73 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh
Confidence 3556788899999999999999999998776644 4443
No 124
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=97.81 E-value=3.5e-05 Score=65.81 Aligned_cols=105 Identities=10% Similarity=0.005 Sum_probs=64.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC---ccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~---~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~ 137 (230)
+.++.|+|.|..||||||+.+.|.+.++-. ++.+. .+ -+..+. + . .+. ++..
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~-------~P---t~eE~~----~--~--------yl~-R~~~ 138 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT-------KP---TETERG----Q--W--------YFQ-RYVA 138 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC-------SC---CHHHHT----S--C--------TTH-HHHT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC-------Cc---ChHHHh----c--h--------HHH-HHHH
Confidence 368999999999999999999999988543 23221 11 111111 0 0 111 2222
Q ss_pred ccccCCCeEEEeCccCCHH-------------------HHHHHh----ccCCcCEEEEEecCHHHHHHHHhcCCCC
Q 026951 138 GYYRGESGFILDGIPRTRI-------------------QAEILD----QIVDVDLVINFKSIEDQLVKRNLESEAF 190 (230)
Q Consensus 138 ~~~~~~~~~IlDg~p~~~~-------------------qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~~ 190 (230)
.....+.-+|.|++.++.. +...|+ ..+.+++.++|+++.++..+|+..|..+
T Consensus 139 ~LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~d 214 (304)
T 3czq_A 139 TFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHD 214 (304)
T ss_dssp TCCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHC
T ss_pred hcccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcC
Confidence 2112366678886653311 111221 1246899999999999999999887543
No 125
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.80 E-value=1.4e-05 Score=66.19 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHc
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQEL 102 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~ 102 (230)
++|.|+|++||||||+++.|.+.+|+++++.++.+++.+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~ 40 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL 40 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHH
Confidence 579999999999999999999889999999988877654
No 126
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.78 E-value=1e-05 Score=69.48 Aligned_cols=35 Identities=31% Similarity=0.291 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~d 96 (230)
++..|+|+||+||||||++..|++.++..+||+|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 56789999999999999999999999987777654
No 127
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.76 E-value=9.7e-06 Score=69.71 Aligned_cols=36 Identities=25% Similarity=0.179 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSL 97 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dl 97 (230)
++..|+|+||+||||||++..|++.++..+||+|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 356799999999999999999999999877777654
No 128
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.68 E-value=2.7e-05 Score=61.08 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.++..++|+||+||||||+++.|+..+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4667899999999999999999988653
No 129
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.65 E-value=3.9e-05 Score=59.87 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh----C--CCccchhHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL----E--VPHISMGSLVRQ 100 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~----~--~~~is~~dll~~ 100 (230)
++..++|+||||+||||+++.++..+ | +.+++..+++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 46779999999999999999998765 3 456677666543
No 130
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=2.7e-05 Score=69.81 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+.-|+|.||||+|||++|+.+|..++++++.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 355699999999999999999999999876654
No 131
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=3.2e-05 Score=69.23 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
+.-|+|.||||+|||++|+.+|..++++++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 34599999999999999999999999877655
No 132
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.59 E-value=1.4e-05 Score=69.77 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~ 91 (230)
....|+|+|+||+||||+++.|++.+++++
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 446799999999999999999999999877
No 133
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=3.2e-05 Score=69.37 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+.-|+|.||||+|||++|+.+|..++++++.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 345699999999999999999999999877654
No 134
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.58 E-value=3.9e-05 Score=63.08 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+..++|.||||+|||++|+.+++.++.+++.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 345689999999999999999999998776643
No 135
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=2.9e-05 Score=68.94 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
+.-|+|.||||+|||++|+.+|...+++++++
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 34599999999999999999999999887655
No 136
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.56 E-value=4.6e-05 Score=62.90 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
..++|+||||+||||+++.|+..++.+++.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 4599999999999999999999998765543
No 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.49 E-value=4.9e-05 Score=64.58 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc--chhHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI--SMGSLVRQE 101 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~i--s~~dll~~~ 101 (230)
.+..++|+||||+||||+|+.|++.++.+++ +..+++...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 4556999999999999999999999987665 444665544
No 138
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.48 E-value=4e-05 Score=67.98 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchhH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGS 96 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~d 96 (230)
+..|+|+||+||||||++..|++.++..+||+|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3578999999999999999999999988887764
No 139
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.48 E-value=5.3e-05 Score=63.74 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
.+..++|.||||+||||+|+.+++.++.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 35679999999999999999999999876554
No 140
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.47 E-value=5.8e-05 Score=63.05 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+..++|.||||+||||+|+.+++.++.+++.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 445699999999999999999999998766543
No 141
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.47 E-value=5.1e-05 Score=68.22 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~ 95 (230)
+..|+|+||||+||||+|+.||+.++++++.++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 446999999999999999999999999887664
No 142
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=4.5e-05 Score=68.74 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+.-|+|.||||+|||++|+.+|..++++++.+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 455699999999999999999999999887654
No 143
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.47 E-value=5.8e-05 Score=65.67 Aligned_cols=33 Identities=33% Similarity=0.537 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+..++|.||||+|||++|+.|++.++.+++.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 344699999999999999999999999887755
No 144
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.46 E-value=6.8e-05 Score=62.41 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+..++|.||||+|||++|+.+++..+.+++.+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 556799999999999999999999999876644
No 145
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.46 E-value=7.7e-05 Score=63.88 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccc--hhHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLV 98 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is--~~dll 98 (230)
.+..++|.||||+|||++|+.+++.++.+++. ..+++
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 35679999999999999999999999876654 44443
No 146
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=6.5e-05 Score=67.15 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+.-|+|.||||+|||++|+.+|..++++++.+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 345699999999999999999999999887654
No 147
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.42 E-value=6.3e-05 Score=68.78 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC-------CccchhH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-------PHISMGS 96 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~-------~~is~~d 96 (230)
++..|+|+|.+||||||+++.|+++++. .+++.|+
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5678999999999999999999999986 4666554
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.41 E-value=7.4e-05 Score=62.81 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=24.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
++|+||||+||||+++.|+..++..++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999988765443
No 149
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.41 E-value=0.00011 Score=58.99 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.++..|+|+||+||||||+++.|.+.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3677899999999999999999998764
No 150
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.39 E-value=8.1e-05 Score=62.53 Aligned_cols=31 Identities=35% Similarity=0.490 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
+..++|.||||+|||++|+.+++.++.+++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4468999999999999999999999876553
No 151
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.37 E-value=5.4e-05 Score=62.70 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=25.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
++|.||||+|||++|+.|++.++.+++.+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 88999999999999999999998776654
No 152
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.36 E-value=0.00011 Score=63.05 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh-CCCcc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL-EVPHI 92 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~-~~~~i 92 (230)
.+..|+|.||||+|||++|+.+++.+ +.+++
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 34579999999999999999999988 65544
No 153
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.34 E-value=9.7e-05 Score=64.50 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
+..++|+||||+|||++|+.|++.++.+++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 34599999999999999999999998777654
No 154
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.33 E-value=0.0006 Score=62.11 Aligned_cols=106 Identities=16% Similarity=-0.019 Sum_probs=58.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCC---ccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVP---HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~---~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~ 137 (230)
+.++.|+|.|..||||+|+.+.|.+.++-. ++++. .+ ...... .. .+......
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~-------~P---t~~E~~------~~--------yl~R~~~~ 96 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFL-------RP---SDEELE------RP--------PQWRFWRR 96 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECS-------SC---CHHHHT------SC--------TTHHHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeC-------CC---Chhhcc------CC--------hhhhHHHh
Confidence 478999999999999999999999988533 23221 01 010000 00 11122222
Q ss_pred ccccCCCeEEEeCccCC-------------------HHHHHHHh----ccCCcCEEEEEecCHHHHHHHHhcCCCCC
Q 026951 138 GYYRGESGFILDGIPRT-------------------RIQAEILD----QIVDVDLVINFKSIEDQLVKRNLESEAFS 191 (230)
Q Consensus 138 ~~~~~~~~~IlDg~p~~-------------------~~qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (230)
. ...+.-+|.|+..++ ..+...|+ ..+.+++.++|+++.++..+|+..|..++
T Consensus 97 l-P~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p 172 (500)
T 3czp_A 97 L-PPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDP 172 (500)
T ss_dssp C-CCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------
T ss_pred C-CCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 1 123555667754322 11111122 11467899999999999999999997655
No 155
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.32 E-value=0.0001 Score=59.38 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~ 95 (230)
.+..|+|+||+|+||||+|..|++..+ ..|+.|
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 456799999999999999999998876 767665
No 156
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.29 E-value=0.00012 Score=61.71 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|+||||+|||++|+.+++.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999999887
No 157
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.28 E-value=0.00018 Score=56.91 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVRQ 100 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~---~~--~~is~~dll~~ 100 (230)
..++|.|+||+||||+++.+++.+ +. .+++..+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 679999999999999999998876 33 34566655543
No 158
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.27 E-value=0.00019 Score=55.24 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|.|+||+||||+++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999876
No 159
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.27 E-value=0.00011 Score=56.70 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|.|+||+||||+++.+++.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999876
No 160
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.26 E-value=0.00015 Score=57.01 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEV 89 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~ 89 (230)
++++|+||+||||||+.+.|+..+++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999988864
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.26 E-value=0.00013 Score=59.93 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
++|+||||+||||+++.|+..++..++.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 99999999999999999999887665544
No 162
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.26 E-value=0.00015 Score=63.18 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLV 98 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~--~dll 98 (230)
+..|+|.||||+|||++|+.+++.++.+++.+ .+++
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 34589999999999999999999998776544 4444
No 163
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.25 E-value=0.00014 Score=57.88 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++..++|+||+||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45679999999999999999998765
No 164
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.24 E-value=0.00022 Score=60.49 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.++..|.|.|++||||||+++.|+..++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4778999999999999999999988774
No 165
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.24 E-value=0.00016 Score=65.06 Aligned_cols=33 Identities=33% Similarity=0.472 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC--CCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~--~~~is~ 94 (230)
.+..++|.||||+|||++|+.+++.++ ++++.+
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 345699999999999999999999998 665543
No 166
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.20 E-value=0.00016 Score=62.92 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+..|+|.||||+|||++|+.+++.++.+++.+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 456799999999999999999999998766543
No 167
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.20 E-value=0.00021 Score=61.50 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~ 91 (230)
..++|+||||+||||+++.|+..+++.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 4589999999999999999999987653
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.18 E-value=0.00026 Score=56.90 Aligned_cols=36 Identities=11% Similarity=-0.062 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-----CCccchhHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-----VPHISMGSL 97 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~-----~~~is~~dl 97 (230)
.+..++|.||||+||||+++.+++.++ +.+++..++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 456799999999999999999988763 345555443
No 169
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.18 E-value=0.00062 Score=62.00 Aligned_cols=106 Identities=11% Similarity=0.020 Sum_probs=65.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC---CCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE---VPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEE 137 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~---~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~ 137 (230)
+.++.|+|.|..||||+++.+.|.+.++ +.++++. .+ ..... . . ..+......
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~-------~P---t~~E~----~--~--------~yl~R~~~~ 353 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIA-------AP---TEEER----A--Q--------PYLWRFWRH 353 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECC-------SC---CHHHH----T--S--------CTTHHHHTT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeC-------CC---Chhhh----c--c--------hHHHHHHHh
Confidence 4789999999999999999999998885 3333321 11 11110 0 0 011222222
Q ss_pred ccccCCCeEEEeCccCCH-------------------HHHHHHh----ccCCcCEEEEEecCHHHHHHHHhcCCCCC
Q 026951 138 GYYRGESGFILDGIPRTR-------------------IQAEILD----QIVDVDLVINFKSIEDQLVKRNLESEAFS 191 (230)
Q Consensus 138 ~~~~~~~~~IlDg~p~~~-------------------~qa~~l~----~~~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (230)
. ...+.-+|.|++.++. .+...|+ ..+.+++.++|+++.++..+|+..|..++
T Consensus 354 l-P~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p 429 (500)
T 3czp_A 354 I-PARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTP 429 (500)
T ss_dssp C-CCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSS
T ss_pred C-CCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 2 2345667888665431 1112221 12468899999999999999999986544
No 170
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.16 E-value=0.00022 Score=61.05 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
...++|.|+||+|||++|+.+++.++.+++.+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 34589999999999999999999998876654
No 171
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.15 E-value=0.00025 Score=53.47 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..|+|.|+||+|||++|+.|++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999998765
No 172
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.12 E-value=0.00023 Score=57.60 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+...++|.||||+||||+|..|++.++-.
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g~ 85 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44569999999999999999999987543
No 173
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.11 E-value=0.00023 Score=59.45 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
++|+||||+||||+++.|+..++..++.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 99999999999999999999887665544
No 174
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.10 E-value=0.00027 Score=64.09 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.-|+|+||||+||||+++.++...+++++.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 3489999999999999999999999887654
No 175
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.10 E-value=0.00024 Score=62.33 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
+..++|.|+||+|||++|+.+++.++.+++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 46799999999999999999999998766543
No 176
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.09 E-value=0.00053 Score=65.90 Aligned_cols=119 Identities=14% Similarity=0.169 Sum_probs=61.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHHHHHcCCCChHHHHHHHHHHC---------------------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLVRQELSPRSALYKQIANAVNE--------------------- 118 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~--~dll~~~~~~~~~~~~~i~~~l~~--------------------- 118 (230)
.+.-|+|.||||+|||.+|+.+|..++.+++++ .+++....... .+.+++++..
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGes---e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R 586 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES---EANVREIFDKARQAAPCVLFFDELDSIAKAR 586 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSC---HHHHHHHHHHHHTTCSEEEECSCGGGCC---
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchH---HHHHHHHHHHHHHcCCceeechhhhHHhhcc
Confidence 344589999999999999999999999877654 46665443221 1223322211
Q ss_pred ------CCCCCHHHHHHHHHHHHHhccccCCCeEEEe---CccCCHHHHHHHhccCCcCEEEEEecCHHHHHHHHhcCC
Q 026951 119 ------GKLVPEDVIFALLSKRLEEGYYRGESGFILD---GIPRTRIQAEILDQIVDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 119 ------g~~v~de~~~~ll~~~l~~~~~~~~~~~IlD---g~p~~~~qa~~l~~~~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
+.-..+.++..++ ..|... ....++++= ..|.....+ +-.-+.+|..|++..|+......+.+..
T Consensus 587 ~~~~~~~~~~~~rv~~~lL-~~mdg~--~~~~~V~vi~aTN~p~~lD~A--llRpgRfd~~i~v~lPd~~~R~~il~~~ 660 (806)
T 3cf2_A 587 GGNIGDGGGAADRVINQIL-TEMDGM--STKKNVFIIGATNRPDIIDPA--ILRPGRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp -----------CHHHHHHH-HHHHSS--CSSSSEEEECC-CCSSSSCHH--HHSTTTSCCEEEC-----CHHHHTTTTT
T ss_pred CCCCCCCchHHHHHHHHHH-HHHhCC--CCCCCEEEEEeCCCchhCCHh--HcCCCcceEEEEECCcCHHHHHHHHHHH
Confidence 0011112333333 234332 123344442 334333322 2232467899999999987777776543
No 177
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.06 E-value=0.00031 Score=56.82 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..++|+||+||||||+.+.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 366789999999999999999998866
No 178
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.04 E-value=0.00023 Score=68.32 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch--hHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM--GSLV 98 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~--~dll 98 (230)
.+.-|+|.||||+|||++|+.+|+.+|++++.+ .+++
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 456699999999999999999999999876654 3544
No 179
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.03 E-value=0.00041 Score=55.40 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
..++..++|+||+||||||+.+.|+..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45778899999999999999999987663
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.02 E-value=0.00031 Score=64.17 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+..++|.||||+||||+|+.+++.+++.++.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 345799999999999999999999998766543
No 181
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.00 E-value=0.00042 Score=52.80 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|+|++|+||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 55679999999999999999998866
No 182
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.00 E-value=0.00049 Score=58.99 Aligned_cols=28 Identities=25% Similarity=0.116 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..++..|.|+|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3578899999999999999999998865
No 183
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.98 E-value=0.00045 Score=60.82 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
.++..++|.||||+||||+++.|+..++..++.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 466789999999999999999999988765444
No 184
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.98 E-value=0.00034 Score=62.73 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-CCCc--cchhHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL-EVPH--ISMGSLVR 99 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~-~~~~--is~~dll~ 99 (230)
+..|+|.||||+|||++|+.+++.+ +.++ ++..+++.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 4579999999999999999999988 6544 45555554
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.96 E-value=0.00045 Score=58.87 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh---CC--CccchhHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL---EV--PHISMGSLVR 99 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~---~~--~~is~~dll~ 99 (230)
.+..++|.||||+||||+++.+++.+ +. .+++..++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~ 78 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence 34569999999999999999999876 54 4556655543
No 186
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.93 E-value=0.0005 Score=59.34 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~ 89 (230)
+..++|.||||+|||++|+.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 467999999999999999999999874
No 187
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.92 E-value=0.00016 Score=54.56 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
..|+|.|+||+|||++|+.+++..+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 3489999999999999999987766
No 188
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.91 E-value=0.00045 Score=58.50 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
..++|.|+||+||||+|+.+++.++.+++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45899999999999999999999887654
No 189
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.90 E-value=0.00056 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++|.|+||+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999998875
No 190
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.90 E-value=0.0006 Score=54.21 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEV 89 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~ 89 (230)
..++|.|+||+||||+++.+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999987753
No 191
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.90 E-value=0.00063 Score=57.21 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..++|.||||+||||+|+.|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 369999999999999999999976
No 192
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.89 E-value=0.0005 Score=61.81 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
..++|.||||+||||+|+.|++.++..++.+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 5699999999999999999999998766544
No 193
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.88 E-value=0.00054 Score=58.47 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhC----C--CccchhHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLE----V--PHISMGSLVRQE 101 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~----~--~~is~~dll~~~ 101 (230)
+..++|.||||+|||+++..++..+. . .++++.+++.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 56799999999999999999987543 3 346777766544
No 194
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.87 E-value=0.0007 Score=61.08 Aligned_cols=26 Identities=38% Similarity=0.577 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
....++|+|+||+|||++++.|++.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999986
No 195
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.86 E-value=0.00034 Score=59.79 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=25.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
.++|.||||+|||++++.+++.++.+++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 5999999999999999999999886644
No 196
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.84 E-value=0.00053 Score=63.10 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
++..++|+||||+||||+++.|+..++.+++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 5678999999999999999999998876544
No 197
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.83 E-value=0.00076 Score=52.71 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+...+.|+|++||||||++..|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999998765
No 198
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.82 E-value=0.00068 Score=54.96 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La 84 (230)
.++-.++|+||+||||||+++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 477889999999999999999887
No 199
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.82 E-value=0.00049 Score=54.37 Aligned_cols=24 Identities=17% Similarity=0.055 Sum_probs=21.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 66 WVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
++|+|++||||||+|..|++. +.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCC
Confidence 789999999999999999977 643
No 200
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.81 E-value=0.00073 Score=54.07 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..++-.+.|+||+||||||+++.|+..+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3477899999999999999999998643
No 201
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.81 E-value=0.00062 Score=62.06 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=26.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
-++|+||||+||||+++.|+...+.+++.+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i 95 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITA 95 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 399999999999999999999988766544
No 202
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.79 E-value=0.00079 Score=53.52 Aligned_cols=34 Identities=21% Similarity=0.089 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC--CCccch
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE--VPHISM 94 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~--~~~is~ 94 (230)
.++..++|+|+|||||||++..|+...+ +.+++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 4777899999999999999999986332 344443
No 203
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.78 E-value=0.00061 Score=61.94 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccc--hhHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS--MGSLV 98 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is--~~dll 98 (230)
.+..++|.|+||+|||++|+.+++.++.+++. ..++.
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 34569999999999999999999999876654 44544
No 204
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.78 E-value=0.0009 Score=53.44 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.++|+|++||||||++..|+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 36778999999999999999999854
No 205
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.75 E-value=0.0012 Score=50.93 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 366789999999999999999999876
No 206
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.74 E-value=0.0007 Score=58.53 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|.||||+||||+++.+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 44579999999999999999999876
No 207
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.00048 Score=59.36 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|.||||+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999999876
No 208
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.71 E-value=0.001 Score=56.84 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.++|+||+||||||+++.|+..+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 477889999999999999999999876
No 209
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.68 E-value=0.0012 Score=51.65 Aligned_cols=26 Identities=15% Similarity=-0.002 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+...++|+|++||||||++..|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 45679999999999999999998754
No 210
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.66 E-value=0.00088 Score=57.58 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|+|+||+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45579999999999999999999876
No 211
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.66 E-value=0.0013 Score=56.26 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..|+|+|++||||||++..|+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 467789999999999999999998765
No 212
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.00074 Score=58.05 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..++|.||||+|||++++.+++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 367789999999999999999999887
No 213
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.64 E-value=0.0016 Score=49.13 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999965
No 214
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.62 E-value=0.0015 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
+..+|+|+|++||||||+...|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999976
No 215
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.62 E-value=0.0013 Score=62.73 Aligned_cols=26 Identities=38% Similarity=0.577 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|+|+||+|||++|+.|++.+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44579999999999999999999987
No 216
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.62 E-value=0.0011 Score=52.48 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++.|+|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 358999999999999999998876
No 217
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.61 E-value=0.0015 Score=54.36 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.++|+||+||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 467789999999999999999998754
No 218
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.60 E-value=0.0008 Score=64.80 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=28.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
..+..|+|+||||+||||+++.|+..++.+++.+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 3556799999999999999999999988766544
No 219
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.60 E-value=0.0015 Score=56.26 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+|..+.|+|++||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999998765
No 220
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.59 E-value=0.0015 Score=55.80 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++..+.|+||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999998765
No 221
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.58 E-value=0.0015 Score=51.54 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+..++++|+||+||||++-.++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999997776554
No 222
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.58 E-value=0.0013 Score=53.13 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++..++|+|+|||||||++..|+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 47788999999999999999999873
No 223
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.56 E-value=0.00095 Score=56.68 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
+..+++.||||+||||+++.+++.++..++.+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34577778899999999999999998665543
No 224
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.54 E-value=0.0013 Score=56.05 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.++|.||||+||||+++.+++.++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 399999999999999999998753
No 225
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.0014 Score=56.28 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.++|.||||+||||+++.+++.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 389999999999999999998764
No 226
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.52 E-value=0.0016 Score=49.00 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999999763
No 227
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0018 Score=55.16 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..+.|+|+.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998765
No 228
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.52 E-value=0.00094 Score=57.04 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.++|.|+||+|||++|+.+++.++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 399999999999999999999875
No 229
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.52 E-value=0.0016 Score=52.56 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccch
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM 94 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~ 94 (230)
.++-.++|.|+||+||||++..++... ++.+++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 467789999999999999998886542 3455554
No 230
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=96.51 E-value=0.0096 Score=50.47 Aligned_cols=114 Identities=10% Similarity=0.088 Sum_probs=57.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-CCccchhHHHHHHcCCC----C----h-HHHHHHHHHHCCCCCCHH------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-VPHISMGSLVRQELSPR----S----A-LYKQIANAVNEGKLVPED------ 125 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~-~~~is~~dll~~~~~~~----~----~-~~~~i~~~l~~g~~v~de------ 125 (230)
.+..|+|+|| ||+|+++.|.+.+. -..+++...-|.- .++ . - --+.....+.+|..+.-.
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~-R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~ 179 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPK-REYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL 179 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCC-CTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCC-CCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcE
Confidence 5566899998 79999999988663 1112211111110 000 0 0 123444555566544110
Q ss_pred --HHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCH-HHHHHHHhcCC
Q 026951 126 --VIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIE-DQLVKRNLESE 188 (230)
Q Consensus 126 --~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~-e~l~~Rl~~R~ 188 (230)
+...-+...+.+ ++.+|+|.-+....+... .-..| ++|++..|. +++.+ +.+|.
T Consensus 180 YGt~~~~V~~~~~~-----G~~vildid~~g~~~l~~--~~~~p-i~IfI~pps~~~L~~-L~~R~ 236 (295)
T 1kjw_A 180 YGTSVQSVREVAEQ-----GKHCILDVSANAVRRLQA--AHLHP-IAIFIRPRSLENVLE-INKRI 236 (295)
T ss_dssp EEEEHHHHHHHHHT-----TCEEEECCCTTHHHHHHH--TTCCC-EEEEECCSSHHHHHH-HCTTS
T ss_pred eeeeHHHHHHHHhc-----CCeEEEEeCHHHHHHHHh--cccCC-eEEEEECCCHHHHHH-HHhcC
Confidence 112223333443 678999965443332221 11234 789998874 55554 76665
No 231
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.49 E-value=0.0018 Score=54.45 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.++|+|+||+||||++..|+...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 477789999999999999999987643
No 232
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.49 E-value=0.0015 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
..++|+|+||+|||++|+.+++..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999999999999999998764
No 233
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.0019 Score=54.40 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.++|.||||+||||+++.+++.++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 499999999999999999998763
No 234
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.47 E-value=0.0019 Score=51.68 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.++.++++|+||||||++|..+..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHH
Confidence 567899999999999999988643
No 235
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.47 E-value=0.00087 Score=64.55 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~ 94 (230)
.+..++|+||||+||||+|+.|+..++..++.+
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 455689999999999999999999987665543
No 236
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.46 E-value=0.0017 Score=55.98 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..++|+||||+||||+++.+++.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999999887
No 237
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.46 E-value=0.0019 Score=54.89 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++.+|+|+|++||||||++..|+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999999999998654
No 238
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.44 E-value=0.00083 Score=52.50 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..+.|+|++||||||+++.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 239
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.44 E-value=0.0017 Score=50.14 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 46678999999999999999999763
No 240
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.44 E-value=0.0023 Score=53.57 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
+...++|.||||+|||++|..|++.++
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 345699999999999999999998653
No 241
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.44 E-value=0.0019 Score=57.73 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh-----CC--CccchhHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL-----EV--PHISMGSLV 98 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~-----~~--~~is~~dll 98 (230)
+..++|.||||+||||+++.++..+ +. .+++..++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 5569999999999999999999866 44 345555543
No 242
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.43 E-value=0.0016 Score=53.36 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467789999999999999999997543
No 243
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.41 E-value=0.002 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
..+|+|+|++||||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998753
No 244
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.41 E-value=0.002 Score=58.78 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
..++|+||||+|||++|+.|++.++
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3699999999999999999998773
No 245
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.40 E-value=0.0016 Score=55.88 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=20.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 026951 66 WVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++|+||+|+||||+++.|++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999865
No 246
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.39 E-value=0.0021 Score=55.37 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh--CCCccch
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL--EVPHISM 94 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~--~~~~is~ 94 (230)
++..++|.|+||+||||+|..++... .+.|+++
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 55568999999999999999998753 4567777
No 247
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.39 E-value=0.0022 Score=55.17 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~ 89 (230)
+..++|.|+||+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999998865
No 248
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.36 E-value=0.0026 Score=50.59 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+...|+|+|.+||||||++..|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 249
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.36 E-value=0.0022 Score=47.85 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
..+|+++|.+||||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999754
No 250
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.34 E-value=0.0022 Score=57.35 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++.+|+++|++||||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998655
No 251
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.34 E-value=0.0018 Score=61.62 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=25.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhCCCcc
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLEVPHI 92 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~~~~i 92 (230)
.++|+||||+|||++|+.|++.++.+++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 6999999999999999999999986544
No 252
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.33 E-value=0.0026 Score=47.45 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
++|+++|++||||||+...|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 253
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.33 E-value=0.0021 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++|.||||+||||+++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 39999999999999999999876
No 254
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.32 E-value=0.0019 Score=52.54 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++-.+.|+||.||||||+.+.|+-.+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 66789999999999999999997543
No 255
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.31 E-value=0.002 Score=52.80 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999997543
No 256
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.31 E-value=0.0023 Score=48.63 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
..+|+|+|++||||||+...|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 36799999999999999999975
No 257
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.31 E-value=0.0027 Score=55.04 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..+|+|+|+||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 367789999999999999999998765
No 258
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.30 E-value=0.0028 Score=55.33 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++.+|.|+|+.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 467899999999999999999998765
No 259
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.30 E-value=0.0024 Score=49.91 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
...+|+|+|++||||||+.+.|+..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999999764
No 260
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.28 E-value=0.003 Score=50.41 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+..+|+|+|.+||||||+..+|+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 261
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.28 E-value=0.0027 Score=49.84 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
..+|+|+|++||||||+.+.|+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999764
No 262
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.27 E-value=0.0031 Score=48.94 Aligned_cols=26 Identities=8% Similarity=0.040 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+..++...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 46679999999999999999887653
No 263
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.27 E-value=0.0028 Score=56.85 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++.+|+++|++||||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998755
No 264
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.26 E-value=0.0028 Score=49.06 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
....+|+|+|.+||||||+...|...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999999753
No 265
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.26 E-value=0.0024 Score=53.26 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.++|+|+|||||||++..++..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 47788999999999999999998753
No 266
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.26 E-value=0.0031 Score=54.42 Aligned_cols=27 Identities=37% Similarity=0.526 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..+.|+|+|||||||+.+.|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 467889999999999999999998643
No 267
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.26 E-value=0.0027 Score=48.79 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
++.+|+|+|.|||||||+...|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999754
No 268
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.26 E-value=0.0028 Score=47.42 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|.+||||||+...|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999753
No 269
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.25 E-value=0.0031 Score=47.91 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999764
No 270
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.24 E-value=0.0026 Score=53.36 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.9
Q ss_pred EEEEcCCCCChhHHHHHHHHHh
Q 026951 66 WVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 66 ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++|.||||+||||+++.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 9999999999999999999875
No 271
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.24 E-value=0.0031 Score=49.97 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..+|+|+|++||||||+...|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999997643
No 272
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.24 E-value=0.0031 Score=49.25 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999998753
No 273
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.24 E-value=0.0029 Score=47.46 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
..+|+|+|.+||||||+...|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999753
No 274
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.0032 Score=48.75 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+...|+|+|++||||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999998764
No 275
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.23 E-value=0.0025 Score=52.41 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477789999999999999999997543
No 276
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.23 E-value=0.0032 Score=47.88 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678899999999999999999865
No 277
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.23 E-value=0.0029 Score=47.93 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
+..+|+|+|.+||||||+..+|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 457899999999999999999864
No 278
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.22 E-value=0.0024 Score=53.22 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+-.+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999997543
No 279
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.21 E-value=0.0028 Score=47.68 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
+..+|+|+|.+||||||+...|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999999875
No 280
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.20 E-value=0.0025 Score=55.39 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
+.++.|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6789999999999999999999877643
No 281
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.20 E-value=0.0033 Score=47.80 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
+..+|+|+|.+||||||+...|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 567899999999999999999875
No 282
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.20 E-value=0.0027 Score=51.57 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 3567999999999999999999875
No 283
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.20 E-value=0.0029 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
..+|+|+|++||||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999874
No 284
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.19 E-value=0.0023 Score=53.77 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+-.+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 367789999999999999999997543
No 285
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.19 E-value=0.0031 Score=47.99 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|++||||||+...|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999998653
No 286
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.18 E-value=0.0033 Score=48.53 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+.+..+|+|+|++||||||+..+|...
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999998653
No 287
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.18 E-value=0.0027 Score=51.08 Aligned_cols=25 Identities=16% Similarity=0.023 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
++-.+.|+||.||||||+.+.|+-.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5667999999999999999999753
No 288
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.18 E-value=0.0023 Score=48.95 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La 84 (230)
.+..+|+|+|++||||||+...|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999999886
No 289
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.17 E-value=0.0026 Score=53.08 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+-.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 477789999999999999999997543
No 290
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.17 E-value=0.0025 Score=53.20 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.+.|+||.||||||+.+.|+-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 36778999999999999999999653
No 291
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.16 E-value=0.0029 Score=48.52 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|.+||||||+...|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 5678999999999999999999754
No 292
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.16 E-value=0.0031 Score=52.07 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.+.|+|+.||||||+.+.|+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36678999999999999999999864
No 293
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.16 E-value=0.0032 Score=52.55 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.+.|+|+.||||||+.+.|+-.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47778999999999999999999864
No 294
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.16 E-value=0.006 Score=49.86 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..+...+++.|.+||||||++..|+..+
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3477889999999999999999998654
No 295
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.16 E-value=0.0035 Score=56.97 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++.+|.|+|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 478899999999999999999998765
No 296
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.15 E-value=0.0027 Score=53.15 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999997544
No 297
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.15 E-value=0.0029 Score=47.51 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
..+|+|+|++||||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999998653
No 298
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.14 E-value=0.003 Score=48.76 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|.+||||||+...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999764
No 299
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.14 E-value=0.0028 Score=52.73 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467789999999999999999997544
No 300
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.14 E-value=0.0032 Score=47.44 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|.+||||||+...|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 5678999999999999999998753
No 301
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.14 E-value=0.0027 Score=52.44 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999997644
No 302
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.14 E-value=0.0052 Score=47.41 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 35688999999999999999999764
No 303
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.14 E-value=0.0036 Score=48.09 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999975
No 304
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.14 E-value=0.0038 Score=54.10 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..|.|+|+|||||||+...|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999998643
No 305
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.13 E-value=0.0032 Score=49.41 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 36678999999999999999999753
No 306
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.13 E-value=0.0029 Score=48.72 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=21.5
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
..+..+|+|+|.+||||||+...|..
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhc
Confidence 34678999999999999999999975
No 307
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.13 E-value=0.0038 Score=54.68 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.++|+||+||||||+.+.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356789999999999999999998755
No 308
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.12 E-value=0.0029 Score=52.57 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+-.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467789999999999999999997543
No 309
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.12 E-value=0.0028 Score=52.02 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+-.+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 366789999999999999999997543
No 310
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.11 E-value=0.0031 Score=47.42 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|++||||||+...|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999998754
No 311
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.11 E-value=0.0043 Score=50.57 Aligned_cols=27 Identities=15% Similarity=-0.103 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..++++|+||+||||.+-.++..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 357789999999999999998887765
No 312
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.11 E-value=0.0028 Score=52.56 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999997543
No 313
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.10 E-value=0.0033 Score=59.90 Aligned_cols=28 Identities=29% Similarity=0.630 Sum_probs=23.9
Q ss_pred CCCCe-EEEEEcCCCCChhHHHHHHHHHh
Q 026951 60 PRRGV-QWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 60 ~~~~~-~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+.++. .++|+||||+|||++|+.|++.+
T Consensus 517 ~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 517 PKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444 69999999999999999999986
No 314
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.09 E-value=0.0034 Score=47.11 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLS 84 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La 84 (230)
..+|+|+|.+||||||+...|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 3579999999999999999885
No 315
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.09 E-value=0.0028 Score=53.65 Aligned_cols=32 Identities=16% Similarity=-0.048 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCCccchh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVPHISMG 95 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~ 95 (230)
..++|.|++|+||||+++.+++..++.+++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence 57999999999999999999988876666654
No 316
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.09 E-value=0.0033 Score=47.74 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
+..+|+|+|++||||||+...|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999865
No 317
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.08 E-value=0.003 Score=51.50 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999997644
No 318
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.08 E-value=0.0043 Score=53.22 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..|.|+|++|+||||++..|+..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999998765
No 319
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.07 E-value=0.0033 Score=51.70 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
-.+.|+||.||||||+.+.|+-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999997543
No 320
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.07 E-value=0.0054 Score=47.20 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
....+|+|+|.+||||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 35568999999999999999998654
No 321
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0041 Score=47.35 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 46678999999999999999998653
No 322
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.07 E-value=0.002 Score=50.71 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.++..|+|+|++||||||+.+.|+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4678899999999999999998854
No 323
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.07 E-value=0.0026 Score=51.46 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++-.+.|+||.||||||+.+.|+..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56679999999999999999997543
No 324
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.07 E-value=0.0034 Score=47.63 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
+..+|+|+|.+||||||+...|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999874
No 325
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.06 E-value=0.0039 Score=46.94 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+|+|+|.+||||||+...|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999863
No 326
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.05 E-value=0.0036 Score=54.28 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..++..+.|+|+|||||||++..|+...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478899999999999999999998765
No 327
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.05 E-value=0.0038 Score=48.41 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 3567899999999999999999975
No 328
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.05 E-value=0.0034 Score=47.69 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
....+|+|+|.+||||||+...|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999854
No 329
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.05 E-value=0.003 Score=48.91 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChhHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+|+|+|++||||||+...|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999875
No 330
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=96.05 E-value=0.0062 Score=51.38 Aligned_cols=109 Identities=8% Similarity=0.023 Sum_probs=62.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhCCCccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccc
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLEVPHISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYY 140 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~ 140 (230)
..++.|+|.|..||||++..+.|.+.++-..+.+-. +..-+. . |.....+. +.....-
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a-----~~~Pt~--e--------------E~~~~ylw-R~~~~lP 130 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTA-----FKAPTD--E--------------EKSHDFLW-RIEKQVP 130 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEE-----CCSCCH--H--------------HHTSCTTH-HHHTTCC
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEE-----CCCCCh--h--------------hhcCCHHH-HHHHhCC
Confidence 368899999999999999999999988543332210 000000 0 10011111 1221111
Q ss_pred cCCCeEEEeCccCC-------------------HHHHHHHhcc----CCcCEEEEEecCHHHHHHHHhcCCCCC
Q 026951 141 RGESGFILDGIPRT-------------------RIQAEILDQI----VDVDLVINFKSIEDQLVKRNLESEAFS 191 (230)
Q Consensus 141 ~~~~~~IlDg~p~~-------------------~~qa~~l~~~----~~~d~vI~L~~~~e~l~~Rl~~R~~~~ 191 (230)
..|.-.|+|+..++ ..+...|+.. +.+-+-++|+++.++..+|+..|..++
T Consensus 131 ~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP 204 (289)
T 3rhf_A 131 AAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDP 204 (289)
T ss_dssp CTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCG
T ss_pred CCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCC
Confidence 33556677754433 1122223221 344567999999999999999987654
No 331
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.04 E-value=0.0034 Score=52.39 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467789999999999999999996543
No 332
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.04 E-value=0.0043 Score=48.10 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 46689999999999999999998763
No 333
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.03 E-value=0.004 Score=48.16 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 3567999999999999999999875
No 334
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.02 E-value=0.0036 Score=46.94 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
+..+|+|+|.+||||||+...|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999875
No 335
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.02 E-value=0.0047 Score=52.99 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPH 91 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~ 91 (230)
+..++|.||||+||||+|+.+++.+.+..
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 45699999999999999999999887643
No 336
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.02 E-value=0.005 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999864
No 337
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.02 E-value=0.0033 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+..|+|+|+||+|||++|+.+++..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 3458999999999999999998854
No 338
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.01 E-value=0.0042 Score=47.42 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|.+||||||+...|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 4578999999999999999999753
No 339
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.01 E-value=0.0043 Score=54.07 Aligned_cols=28 Identities=18% Similarity=0.039 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..++..+.|+|||||||||+|..++...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3478899999999999999999997653
No 340
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.00 E-value=0.0041 Score=50.15 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.++-.++|.|+||+|||++|..++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4778899999999999999988753
No 341
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.00 E-value=0.0034 Score=51.94 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 366789999999999999999987543
No 342
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.99 E-value=0.0031 Score=54.98 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
++..++|+|++||||||+.+.|+..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 556899999999999999999987664
No 343
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.99 E-value=0.0042 Score=47.08 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 35678999999999999999999754
No 344
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.98 E-value=0.0034 Score=52.79 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 367789999999999999999997544
No 345
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.97 E-value=0.0049 Score=47.68 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998653
No 346
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.96 E-value=0.0037 Score=55.90 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++.+|+|+|++||||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998765
No 347
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.96 E-value=0.0044 Score=48.71 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
.+.-|+|.|++|+||||+|..|.+ .|...++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lva 45 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID-RGHQLVC 45 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEec
Confidence 455699999999999999999976 4665554
No 348
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.95 E-value=0.0056 Score=46.87 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999998754
No 349
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.94 E-value=0.0047 Score=47.60 Aligned_cols=27 Identities=11% Similarity=-0.039 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..+|+|+|.+||||||+.+.|...+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 356789999999999999998887654
No 350
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.94 E-value=0.0045 Score=48.25 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=20.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|++||||||+..+|..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3566899999999999999999976
No 351
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.93 E-value=0.0044 Score=47.19 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999998753
No 352
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.93 E-value=0.0054 Score=47.76 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35689999999999999999999764
No 353
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.93 E-value=0.0049 Score=47.40 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999998753
No 354
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.93 E-value=0.0041 Score=47.68 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|++||||||+...|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 5678999999999999999998753
No 355
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.92 E-value=0.0048 Score=47.88 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 35679999999999999999988753
No 356
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.91 E-value=0.0048 Score=50.62 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999753
No 357
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.91 E-value=0.0054 Score=45.91 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 026951 65 QWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+|+|+|.+||||||+...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999653
No 358
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.90 E-value=0.0054 Score=47.94 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 46789999999999999999998753
No 359
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.90 E-value=0.0056 Score=47.76 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999999999853
No 360
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.90 E-value=0.0039 Score=51.67 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.+.|+||.||||||+.+.|+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36678999999999999999999754
No 361
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.90 E-value=0.0062 Score=47.22 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
....+|+|+|.+||||||+...|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 45678999999999999999998753
No 362
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.89 E-value=0.0061 Score=53.11 Aligned_cols=26 Identities=15% Similarity=0.113 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++-.++|+||+||||||+.+.|+..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34489999999999999999987654
No 363
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.87 E-value=0.0058 Score=46.55 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+|+||||+...+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999998753
No 364
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.87 E-value=0.0058 Score=52.71 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..|+|+|+||+||||+...|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999997654
No 365
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.87 E-value=0.0058 Score=47.15 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999999999974
No 366
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.86 E-value=0.0028 Score=61.25 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+..++|+|+||+||||+++.|++.+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999876
No 367
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.86 E-value=0.0049 Score=53.78 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.+.|+||+||||||+.+.|+-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcC
Confidence 36678999999999999999999754
No 368
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.84 E-value=0.0049 Score=47.81 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=21.6
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
+....+|+|+|.+||||||+...|..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34667899999999999999999854
No 369
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.83 E-value=0.0049 Score=47.11 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
+..+|+|+|.+||||||+...|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999875
No 370
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.0066 Score=47.03 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
...+|+|+|.+||||||+...|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 567899999999999999999975
No 371
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.81 E-value=0.0066 Score=52.40 Aligned_cols=27 Identities=11% Similarity=-0.064 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
..++..++|+|+|||||||+|..++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999999875
No 372
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.80 E-value=0.0044 Score=47.36 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
+..+|+|+|.+||||||+...|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 567899999999999999999874
No 373
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.80 E-value=0.0057 Score=47.79 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999998754
No 374
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.80 E-value=0.0057 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.+.|+||+||||||+.+.|+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 36778999999999999999999754
No 375
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.77 E-value=0.0058 Score=53.74 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||+||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 367789999999999999999997543
No 376
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.75 E-value=0.006 Score=53.29 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.+.|+||+||||||+.+.|+-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcC
Confidence 36778999999999999999999754
No 377
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.75 E-value=0.0045 Score=47.19 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|.+||||||+..+|...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999763
No 378
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.74 E-value=0.0062 Score=52.87 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~ 95 (230)
.++..++|.|+||+||||+|..++... .+.+++..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 477889999999999999999987543 34566553
No 379
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.74 E-value=0.0055 Score=47.63 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 35678999999999999999998753
No 380
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.74 E-value=0.0055 Score=47.03 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+|+|+|.+||||||+...|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 47999999999999999998753
No 381
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.74 E-value=0.0073 Score=47.32 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
....+|+|+|.+||||||+...|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999999763
No 382
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.73 E-value=0.0047 Score=48.25 Aligned_cols=28 Identities=11% Similarity=0.026 Sum_probs=21.8
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+.+..+|+|+|.+||||||+...+...+
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3467799999999999999998876543
No 383
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.73 E-value=0.0065 Score=47.70 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|++||||||+..+|..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3567899999999999999999854
No 384
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.72 E-value=0.0079 Score=46.44 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
....+|+|+|.+||||||+...|...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 35678999999999999999998753
No 385
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.72 E-value=0.006 Score=47.36 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 35679999999999999999998764
No 386
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.72 E-value=0.0067 Score=55.30 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++.+|+|+|+|||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999998654
No 387
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.72 E-value=0.0071 Score=47.45 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
....+|+|+|.+||||||+...|..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999999875
No 388
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.72 E-value=0.0064 Score=50.83 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..+.|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998755
No 389
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.72 E-value=0.0064 Score=47.96 Aligned_cols=25 Identities=12% Similarity=-0.053 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|.+||||||+..+|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999764
No 390
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.72 E-value=0.0079 Score=53.53 Aligned_cols=27 Identities=15% Similarity=-0.021 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
++-.++|+||+||||||+.+.|...+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456799999999999999999988764
No 391
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.71 E-value=0.0063 Score=48.10 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 35678999999999999999998753
No 392
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.71 E-value=0.007 Score=46.88 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
...+|+|+|.+||||||+...|....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 56789999999999999999997643
No 393
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.71 E-value=0.0064 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||+||||||+.+.|+-.+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 367789999999999999999997543
No 394
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.70 E-value=0.009 Score=48.80 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..+|++.|+||+||||++-.++..+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4679999999999999988887654
No 395
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.69 E-value=0.0054 Score=51.91 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 367789999999999999999997543
No 396
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.69 E-value=0.0064 Score=50.43 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
..+|+|+|+|||||||+...|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999653
No 397
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.68 E-value=0.0064 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.+.|+||+||||||+.+.|+-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 36678999999999999999999754
No 398
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.68 E-value=0.0042 Score=60.06 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHh
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..++|+||||+|||++|+.|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999877
No 399
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.68 E-value=0.0059 Score=54.05 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.2
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHH
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLS 84 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La 84 (230)
..++-.+.|+|+|||||||++..|+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3477889999999999999999876
No 400
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.68 E-value=0.0089 Score=47.41 Aligned_cols=27 Identities=15% Similarity=-0.069 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..++++|++||||||.+-.++..+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356789999999999999999988776
No 401
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.0053 Score=55.34 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++.++.|+|+.||||||+++.|+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 67789999999999999999997643
No 402
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.68 E-value=0.0067 Score=53.05 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||+||||||+.+.|+-.+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 477789999999999999999997543
No 403
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.67 E-value=0.0062 Score=47.37 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
...+|+|+|.+||||||+...|..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999853
No 404
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.67 E-value=0.0073 Score=47.07 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999999999864
No 405
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.66 E-value=0.0056 Score=56.91 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCC
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEV 89 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~ 89 (230)
+..++|+||||+||||+++.|+..++.
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 357999999999999999999997753
No 406
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.65 E-value=0.0074 Score=47.52 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+..++..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 4678999999999999999999875
No 407
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.65 E-value=0.0064 Score=49.87 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.|||||||+...|..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC
Confidence 3568999999999999999999864
No 408
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.65 E-value=0.0063 Score=46.91 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|.+||||||+...|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999753
No 409
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.64 E-value=0.0085 Score=50.69 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++..+.++|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67788899999999999999998755
No 410
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.63 E-value=0.0069 Score=47.95 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+...|...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999763
No 411
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.62 E-value=0.006 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+-.+.|+|+.||||||+.+.|+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999999999754
No 412
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.59 E-value=0.0039 Score=53.20 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+|+.||||||+.+.|+..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 467789999999999999999997654
No 413
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.58 E-value=0.008 Score=50.97 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++..|+++|++|+||||++..|+..+
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 37789999999999999999998765
No 414
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.58 E-value=0.0073 Score=47.93 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 3567999999999999999999864
No 415
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.57 E-value=0.0073 Score=52.91 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
++-.+.|+||+||||||+.+.|+-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 6678999999999999999999753
No 416
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.57 E-value=0.006 Score=47.17 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..+|+|+|.+||||||+...|....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999986543
No 417
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.56 E-value=0.0066 Score=47.61 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 3568999999999999999999864
No 418
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.54 E-value=0.0073 Score=51.62 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++..++|.|+||+||||+|..++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 467789999999999999999998653
No 419
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.53 E-value=0.0051 Score=53.45 Aligned_cols=26 Identities=19% Similarity=0.520 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.+.|+||+||||||+.+.|+-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcC
Confidence 36678999999999999999999754
No 420
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.52 E-value=0.0072 Score=47.36 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
...+|+|+|.+||||||+...|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999999875
No 421
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.52 E-value=0.0084 Score=51.09 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.++|.|+||+||||+|..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 477889999999999999999997643
No 422
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.007 Score=46.89 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|.+||||||+...|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 5578999999999999999999764
No 423
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.51 E-value=0.0089 Score=52.06 Aligned_cols=34 Identities=12% Similarity=0.029 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccch
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISM 94 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~ 94 (230)
.++..++|.|+||+||||+|..++... .+.+|++
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 477789999999999999999987643 3556666
No 424
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.51 E-value=0.0083 Score=52.34 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..+|+|+|.+||||||+++.+.-.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 467899999999999999999985444
No 425
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.50 E-value=0.0082 Score=51.04 Aligned_cols=26 Identities=12% Similarity=-0.109 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++..++|.|+||+||||+|..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 47789999999999999999999864
No 426
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.50 E-value=0.0087 Score=46.70 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
...+|+|+|.+||||||+...|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998653
No 427
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.50 E-value=0.0083 Score=57.04 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|+|+||+||||+++.|++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999876
No 428
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.49 E-value=0.0064 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLS 84 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La 84 (230)
...+|+|+|.+||||||+..+|.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999885
No 429
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.49 E-value=0.0053 Score=52.86 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.+..++|+|++||||||+.+.|+..+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 355799999999999999999987653
No 430
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.0087 Score=47.98 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
...+|+|+|.||+||||+..++..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999864
No 431
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.47 E-value=0.01 Score=53.07 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++.+|+++|++||||||++..||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356788999999999999999998654
No 432
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.47 E-value=0.0084 Score=52.89 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.+.|+||+||||||+.+.|+..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 46778999999999999999999753
No 433
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.45 E-value=0.0085 Score=52.27 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
++..++|+|++||||||+.+.|+..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhcc
Confidence 4568999999999999999998743
No 434
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.42 E-value=0.007 Score=46.70 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La 84 (230)
.+..+|+|+|.+||||||+...|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 367899999999999999999884
No 435
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.41 E-value=0.008 Score=52.20 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCeEEEE--EcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVL--IGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl--~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++| .|+||+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4456777 9999999999999998765
No 436
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.40 E-value=0.011 Score=47.06 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.+..+|+|+|.+||||||+..+|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 35679999999999999999998753
No 437
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=95.40 E-value=0.1 Score=44.12 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=56.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhCC-CccchhHHHHHHcC---CCC-----hHHHHHHHHHHCCCCCCH--------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLEV-PHISMGSLVRQELS---PRS-----ALYKQIANAVNEGKLVPE-------- 124 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~~-~~is~~dll~~~~~---~~~-----~~~~~i~~~l~~g~~v~d-------- 124 (230)
+...|||+|| ||+|+.+.|.+.+.- ..+++...-|.--. .+. ...+.....+.+|..+.-
T Consensus 99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~Y 175 (292)
T 3tvt_A 99 YTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLY 175 (292)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEcccee
Confidence 4445888998 599999999887742 22222111110000 000 011334444555543310
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhccCCcCEEEEEecCH-HHHHHHHhcC
Q 026951 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQIVDVDLVINFKSIE-DQLVKRNLES 187 (230)
Q Consensus 125 e~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~~~~d~vI~L~~~~-e~l~~Rl~~R 187 (230)
.+...-+...+.+ ++.+|+|--+.. +..+......-++|++..|. +++.+|+..|
T Consensus 176 GT~~~~V~~~~~~-----gk~viLdid~qg---~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r 231 (292)
T 3tvt_A 176 GTSVASVREVAEK-----GKHCILDVSGNA---IKRLQVAQLYPVAVFIKPKSVDSVMEMNRRM 231 (292)
T ss_dssp EEEHHHHHHHHHH-----TCEEEECCCTHH---HHHHHHTTCCCEEEEECCSCHHHHHHTCTTS
T ss_pred EEehHHHHHHHHc-----CCcEEEeccchh---hhhcccccccceEEEEECCCHHHHHHHHhCC
Confidence 0112334444454 688999855433 33333322223678887765 5566555444
No 438
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.38 E-value=0.0087 Score=46.98 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhh
Confidence 3567899999999999999999865
No 439
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.37 E-value=0.011 Score=50.10 Aligned_cols=25 Identities=12% Similarity=-0.081 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
..++|.|++|+||||+++.+++..+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999988764
No 440
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.33 E-value=0.0087 Score=49.50 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.|||||||+...|..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHC
Confidence 3567899999999999999999975
No 441
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.33 E-value=0.011 Score=46.21 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
...+|+|+|.|||||||+..++...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999753
No 442
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.32 E-value=0.012 Score=45.42 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHhC
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
..+|+|+.||||||+.+.|.-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 689999999999999999976554
No 443
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.32 E-value=0.0053 Score=46.96 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=11.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
...+|+|+|.+||||||+...|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998864
No 444
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.32 E-value=0.0037 Score=58.15 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVP 90 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~ 90 (230)
..++|+|+||+|||++|+.+++.++..
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCE
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCc
Confidence 369999999999999999999887643
No 445
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.32 E-value=0.009 Score=47.18 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 3567899999999999999999864
No 446
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.011 Score=46.53 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
...+|+|+|.+||||||+...|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHhc
Confidence 456899999999999999999875
No 447
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.30 E-value=0.011 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|+|++||||||+.+.|+ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 45689999999999999999997 44
No 448
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.30 E-value=0.0076 Score=55.03 Aligned_cols=26 Identities=8% Similarity=0.239 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+..++|+||+||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45579999999999999999997655
No 449
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.28 E-value=0.0054 Score=53.38 Aligned_cols=26 Identities=19% Similarity=0.459 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.+.|+||+||||||+.+.|+-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 36778999999999999999999753
No 450
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.27 E-value=0.012 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.++|.|+||+||||++..++..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999999999998663
No 451
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.27 E-value=0.012 Score=46.37 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|.+|+||||+...|...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 5578999999999999999998753
No 452
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.16 E-value=0.013 Score=49.03 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
...+|+|+|.|||||||+...|...
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999999753
No 453
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.16 E-value=0.012 Score=46.62 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=22.7
Q ss_pred CCCCeEEEEEcCCCCChhHHHHH-HHHHh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADN-LSKLL 87 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~-La~~~ 87 (230)
+.+..+|+|+|.+||||||+... +...+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34668999999999999999998 44443
No 454
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.13 E-value=0.011 Score=50.31 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+...++|+|+.||||||+.+.|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4567899999999999999999854
No 455
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.10 E-value=0.015 Score=51.84 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++..|+|+|++||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788899999999999999998766
No 456
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.09 E-value=0.01 Score=50.15 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
+..+|+|+|+|||||||+...|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHC
Confidence 556899999999999999999975
No 457
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.014 Score=46.57 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
....+|+|+|.+||||||+...|..
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhc
Confidence 3557899999999999999999875
No 458
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.05 E-value=0.013 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.9
Q ss_pred CCeE--EEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQ--WVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~--ivl~G~pGsGKsT~a~~La~~ 86 (230)
+|-. +.|+|++||||||+.+.|+..
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4555 999999999999999999754
No 459
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.01 E-value=0.014 Score=53.50 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=25.6
Q ss_pred CCCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 58 SPPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 58 ~~~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
+.+.++-++.|+||.||||||+.+.|+-.+
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345688899999999999999999997644
No 460
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.95 E-value=0.015 Score=51.70 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+.|+|++||||||+.+.|+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 344899999999999999999976
No 461
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.94 E-value=0.015 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+.|+|++||||||+.+.|+.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST
T ss_pred cCCeEEEECCCCCcHHHHHHHhcc
Confidence 356799999999999999998864
No 462
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.93 E-value=0.015 Score=51.98 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHh
Q 026951 65 QWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 65 ~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++|.|+||+||||++..+++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999988766
No 463
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.89 E-value=0.017 Score=50.48 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh-----CCCccchh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL-----EVPHISMG 95 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~-----~~~~is~~ 95 (230)
.++..++|.|+||+||||+|..++... .+.+|+++
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 367789999999999999999987643 35566654
No 464
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.87 E-value=0.0087 Score=47.44 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
....+|+|+|.+||||||+...|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998654
No 465
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.87 E-value=0.017 Score=50.94 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.++..+.|+|+|||||||+.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4778999999999999999999986
No 466
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.87 E-value=0.015 Score=53.12 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNL 83 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~L 83 (230)
.++-.++|+|++||||||+++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 47788999999999999999994
No 467
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.86 E-value=0.017 Score=53.40 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
...++|.|+||+||||++..+...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999987654
No 468
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.84 E-value=0.015 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChhHHHHHHHHH
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
++|+|+|.|||||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999654
No 469
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.83 E-value=0.02 Score=46.09 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
-+..+|+|+|.+|||||++..++..
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHh
Confidence 3557899999999999999999865
No 470
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.81 E-value=0.017 Score=49.60 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
++ .+.|.|+||+||||+|-.++..
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHH
Confidence 56 6999999999999999887543
No 471
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.80 E-value=0.019 Score=51.17 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.++|.|+||+||||+|..++..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999999998764
No 472
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.81 E-value=0.005 Score=48.28 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
.+..+|+|+|.+||||||+...|..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4678899999999999999988854
No 473
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.78 E-value=0.018 Score=49.92 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
.++-++.|+|++|+||||+.+.|+....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4778999999999999999999988764
No 474
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.78 E-value=0.018 Score=47.88 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+...|+|+|.|||||||+...|...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999653
No 475
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.76 E-value=0.0062 Score=47.44 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=6.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
+..+|+|+|.+||||||+...|...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999988654
No 476
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.74 E-value=0.019 Score=51.37 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHhC
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLLE 88 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~~ 88 (230)
..++-++.|+|++||||||+.+.|+....
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 34778899999999999999999988764
No 477
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.72 E-value=0.017 Score=48.94 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.3
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHH
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
++.+-.|.|+|.|||||||+...|..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 44566899999999999999999864
No 478
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.68 E-value=0.019 Score=52.69 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 60 PRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 60 ~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
..++-++.|+|+.||||||+.+.|+-.+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999997644
No 479
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.67 E-value=0.017 Score=48.94 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
...|+|+|++||||||+...|..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999764
No 480
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.66 E-value=0.018 Score=52.49 Aligned_cols=27 Identities=11% Similarity=0.131 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.++|.|++||||||++..++...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999997643
No 481
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.65 E-value=0.018 Score=53.14 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||+||||||+.+.|+..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998755
No 482
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=94.60 E-value=0.29 Score=46.31 Aligned_cols=115 Identities=11% Similarity=0.067 Sum_probs=59.4
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHhC-CCccchhHHHHHHcC---CCCh-----HHHHHHHHHHCCCCCCH--------
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLLE-VPHISMGSLVRQELS---PRSA-----LYKQIANAVNEGKLVPE-------- 124 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~~-~~~is~~dll~~~~~---~~~~-----~~~~i~~~l~~g~~v~d-------- 124 (230)
++..|+|+|| ||+|+.+.|.+.+. -..+++...-|.-.. .+.. --+.....+.+|..+.-
T Consensus 530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~Y 606 (721)
T 2xkx_A 530 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLY 606 (721)
T ss_pred CCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccc
Confidence 4567899999 49999999988763 122222222221100 0000 12334444555554411
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEeCccCCHHHHHHHhcc-CCcCEEEEEecCHHHHHHHHhcCC
Q 026951 125 DVIFALLSKRLEEGYYRGESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIEDQLVKRNLESE 188 (230)
Q Consensus 125 e~~~~ll~~~l~~~~~~~~~~~IlDg~p~~~~qa~~l~~~-~~~d~vI~L~~~~e~l~~Rl~~R~ 188 (230)
.+-..-++..+.+ ++.+|+|.-+. .+..+... ..| ++||+..|.-..++++.+|.
T Consensus 607 Gt~~~~v~~~~~~-----g~~~ildi~~~---~~~~l~~~~~~p-~~ifi~pps~~~L~~l~~R~ 662 (721)
T 2xkx_A 607 GTSVQSVREVAEQ-----GKHCILDVSAN---AVRRLQAAHLHP-IAIFIRPRSLENVLEINKRI 662 (721)
T ss_pred eeeHHHHHHHHHC-----CCcEEEeCCHH---HHHHHHhcccCC-EEEEEeCCcHHHHHHHhccC
Confidence 1223334444444 68899996432 22223211 234 78999987644444576665
No 483
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.60 E-value=0.021 Score=48.39 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
...+|+|+|.|||||||+...|...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999997654
No 484
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=94.59 E-value=0.12 Score=44.06 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=49.5
Q ss_pred eEEEEEcCCCCChhHHHHHHHHHhCCC-ccchhHHHHHHcCCCChHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhccccC
Q 026951 64 VQWVLIGDPGVKKHVYADNLSKLLEVP-HISMGSLVRQELSPRSALYKQIANAVNEGKLVPEDVIFALLSKRLEEGYYRG 142 (230)
Q Consensus 64 ~~ivl~G~pGsGKsT~a~~La~~~~~~-~is~~dll~~~~~~~~~~~~~i~~~l~~g~~v~de~~~~ll~~~l~~~~~~~ 142 (230)
.-|||+|| ||+|+.+.|.+.+.-. -+++. +. .. +.++..++-+.+.++ +.+
T Consensus 146 RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~--~~----------r~----i~~~~fis~~~V~~v----l~~----- 197 (308)
T 3kfv_A 146 RPVVILGP---VADIAMQKLTAEMPDQFEIAET--VS----------RT----DSPSKIIKLDTVRVI----AEK----- 197 (308)
T ss_dssp CCEEEEST---THHHHHHHHHHHCTTTEEECCC--C----------------------CCCHHHHHHH----HHT-----
T ss_pred CeEEEeCc---cHHHHHHHHHHhCccccccccc--cc----------cc----ccCCCeecHHHHHHH----HHC-----
Confidence 33889999 7999999998876321 11211 00 01 356667765554444 343
Q ss_pred CCeEEEeCccCCHHHHHHHhcc-CCcCEEEEEecCH-HHHHHHHhcCC
Q 026951 143 ESGFILDGIPRTRIQAEILDQI-VDVDLVINFKSIE-DQLVKRNLESE 188 (230)
Q Consensus 143 ~~~~IlDg~p~~~~qa~~l~~~-~~~d~vI~L~~~~-e~l~~Rl~~R~ 188 (230)
++.+|||-- ..-+..+... ..| ++|||..|. +++.+| .+|.
T Consensus 198 Gk~~ILDId---~QGa~~lk~~~~~p-i~IFI~PPS~eeL~~r-r~R~ 240 (308)
T 3kfv_A 198 DKHALLDVT---PSAIERLNYVQYYP-IVVFFIPESRPALKAL-RQWL 240 (308)
T ss_dssp TCEEEECCC---HHHHHHHHHTTCCC-EEEEEEESCHHHHHHH-HHHH
T ss_pred CCcEEEEEC---HHHHHHHHhcCCCC-EEEEEeCCCHHHHHHH-HhcC
Confidence 789999943 3333444322 234 677777766 555554 5554
No 485
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.58 E-value=0.0069 Score=51.70 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
++..++|+|++||||||+.+.|+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 567899999999999999998853
No 486
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.58 E-value=0.017 Score=53.44 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||+||||||+.+.|+..+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 366789999999999999999997655
No 487
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.55 E-value=0.031 Score=45.12 Aligned_cols=27 Identities=15% Similarity=-0.098 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++.+.+++|++||||||.+-.++..+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457889999999999999999887765
No 488
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.54 E-value=0.024 Score=50.46 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
...+|+|+|+|||||||+...|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 5679999999999999999999754
No 489
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.52 E-value=0.021 Score=48.51 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+.++|.||||+||||.+..|++..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999999999853
No 490
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.48 E-value=0.0087 Score=47.33 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLS 84 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La 84 (230)
....+|+|+|.+||||||+...|.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCT
T ss_pred cCccEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999999886
No 491
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.43 E-value=0.018 Score=53.36 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
++-.+.|+||+||||||+.+.|+..+
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 56689999999999999999997654
No 492
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.42 E-value=0.028 Score=48.55 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
.++-.++|.|+||+||||++..++..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999765
No 493
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.025 Score=52.67 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=25.1
Q ss_pred CCCCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 59 PPRRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 59 ~~~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.+.++-.+.|+||.||||||+.+.|+-.+
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34678899999999999999999998644
No 494
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.37 E-value=0.022 Score=48.69 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChhHHHHHHHHHhCCCccc
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSKLLEVPHIS 93 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~~~~~~~is 93 (230)
+.-++|+|++|+||||++..|.+. |...++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~ 173 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLVA 173 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence 567999999999999999999764 665553
No 495
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.36 E-value=0.028 Score=50.34 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh---C--CCccch
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL---E--VPHISM 94 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~---~--~~~is~ 94 (230)
.++-.++|.|+||+||||+|..++... | +.++|.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 477789999999999999999987643 2 455654
No 496
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.32 E-value=0.026 Score=48.76 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
....|+|+|+|||||||+...|+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999654
No 497
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.31 E-value=0.028 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChhHHHHHHHH
Q 026951 63 GVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 63 ~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
+..|+|+|.|||||||+...|..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 46799999999999999999976
No 498
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.31 E-value=0.02 Score=53.08 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCChhHHHHHHHHHh
Q 026951 61 RRGVQWVLIGDPGVKKHVYADNLSKLL 87 (230)
Q Consensus 61 ~~~~~ivl~G~pGsGKsT~a~~La~~~ 87 (230)
.++-.+.|+||+||||||+.+.|+..+
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 467789999999999999999997655
No 499
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.29 E-value=0.026 Score=46.88 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSKL 86 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~~ 86 (230)
..++|+|+|.|||||||+...|...
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 4568999999999999999999753
No 500
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.21 E-value=0.028 Score=46.47 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChhHHHHHHHH
Q 026951 62 RGVQWVLIGDPGVKKHVYADNLSK 85 (230)
Q Consensus 62 ~~~~ivl~G~pGsGKsT~a~~La~ 85 (230)
+..+|+++|.+|+||||+...|..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999874
Done!