BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026952
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp
Length = 206
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 99/179 (55%), Gaps = 3/179 (1%)
Query: 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNG 62
IVGLTGGI SGK+T++NLF VP+VDAD++AR+V+ K + K+V FG IL G
Sbjct: 4 IVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQG 63
Query: 63 EVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKM 122
E++R+ L + VF+ + LN LL P I + KL + + VPLL E K+
Sbjct: 64 ELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQ---KLAEQTAPYTLFVVPLLIENKL 120
Query: 123 DKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTL 181
I+VV V P TQL R RD + E + +N+Q+ + AD VINN L
Sbjct: 121 TALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRIMNSQVSQQERLKWADDVINNDAEL 179
>pdb|1VHL|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHT|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VIY|A Chain A, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|B Chain B, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|C Chain C, Crystal Structure Of Dephospho-Coa Kinase
Length = 218
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 101/195 (51%), Gaps = 15/195 (7%)
Query: 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNG 62
IV LTGGI SGKSTV+N F + V+DADIIAR V++ G + FG +++ +G
Sbjct: 6 IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADG 65
Query: 63 EVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLK------LWIKGCKVIVLDVPL 116
+ R L + +F++ ++ LN LL P I ++ + LW+ VPL
Sbjct: 66 TLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWV---------VPL 116
Query: 117 LFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVIN 176
L E + K ++VV V P+TQL+R M RD + E + AQ + + AD VI+
Sbjct: 117 LVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVID 176
Query: 177 NTGTLDDLNEQVRKV 191
N G D + V ++
Sbjct: 177 NNGAPDAIASDVARL 191
>pdb|2IF2|A Chain A, Crystal Structure Of The Putative Dephospho-Coa Kinase
From Aquifex Aeolicus, Northeast Structural Genomics
Target Qr72.
pdb|2IF2|B Chain B, Crystal Structure Of The Putative Dephospho-Coa Kinase
From Aquifex Aeolicus, Northeast Structural Genomics
Target Qr72.
pdb|2IF2|C Chain C, Crystal Structure Of The Putative Dephospho-Coa Kinase
From Aquifex Aeolicus, Northeast Structural Genomics
Target Qr72
Length = 204
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 8/200 (4%)
Query: 4 VGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGE 63
+GLTG I GKSTV+ F+ V+DAD + +KG +++VV FG+ IL G
Sbjct: 4 IGLTGNIGCGKSTVAQXFRELGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGN 63
Query: 64 VDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLW--IKGCKVIVLDVPLLFEAK 121
+DR KL IVF D K + L + ++ E+ K+ + + +L+ LL E
Sbjct: 64 IDRKKLADIVFKDEEKLRKLEEI----THRALYKEIEKITKNLSEDTLFILEASLLVEKG 119
Query: 122 MDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTL 181
K ++VV+ + +R + R SEED R Q P++ K AD VI+N+G++
Sbjct: 120 TYKNYDKLIVVYAPYEVCKERAIKRG-XSEEDFERRWKKQXPIEEKVKYADYVIDNSGSI 178
Query: 182 DDLNEQVRKVLFEIKR-PLN 200
++ +QV+KV E+ R PL
Sbjct: 179 EETYKQVKKVYEELTRDPLE 198
>pdb|1T3H|A Chain A, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|B Chain B, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|C Chain C, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
Length = 214
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 99/195 (50%), Gaps = 15/195 (7%)
Query: 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNG 62
IV LTGGI SGKSTV+N F + V+DADIIAR V++ G + FG + + +G
Sbjct: 4 IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANXIAADG 63
Query: 63 EVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLK------LWIKGCKVIVLDVPL 116
+ R L + +F++ ++ LN LL P I ++ + LW+ VPL
Sbjct: 64 TLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWV---------VPL 114
Query: 117 LFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVIN 176
L E + K ++VV V P+TQL+R RD + E + AQ + + AD VI+
Sbjct: 115 LVENSLYKKANRVLVVDVSPETQLKRTXQRDDVTREHVEQILAAQATREARLAVADDVID 174
Query: 177 NTGTLDDLNEQVRKV 191
N G D + V ++
Sbjct: 175 NNGAPDAIASDVARL 189
>pdb|1N3B|A Chain A, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|B Chain B, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|C Chain C, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
Length = 216
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 99/195 (50%), Gaps = 15/195 (7%)
Query: 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNG 62
IV LTGGI SGKSTV+N F + V+DADIIAR V++ G + FG + + +G
Sbjct: 4 IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANXIAADG 63
Query: 63 EVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLK------LWIKGCKVIVLDVPL 116
+ R L + +F++ ++ LN LL P I ++ + LW+ VPL
Sbjct: 64 TLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWV---------VPL 114
Query: 117 LFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVIN 176
L E + K ++VV V P+TQL+R RD + E + AQ + + AD VI+
Sbjct: 115 LVENSLYKKANRVLVVDVSPETQLKRTXQRDDVTREHVEQILAAQATREARLAVADDVID 174
Query: 177 NTGTLDDLNEQVRKV 191
N G D + V ++
Sbjct: 175 NNGAPDAIASDVARL 189
>pdb|4I1U|A Chain A, Apo Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis
pdb|4I1U|B Chain B, Apo Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis
pdb|4I1V|A Chain A, Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis Bound To Adp
pdb|4I1V|B Chain B, Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis Bound To Adp
Length = 210
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 13/194 (6%)
Query: 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLP 60
M +GLTGGI SGK+TV++LF A +VD D+IA + + FG +
Sbjct: 9 MYAIGLTGGIGSGKTTVADLFAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAA 68
Query: 61 NGEVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFE- 119
+G +DR+++ ++FSD R+ L + P I E +G VI + VPLL E
Sbjct: 69 DGSLDRARMRALIFSDEDARRRLEAITHPLIRAETEREARD--AQGPYVIFV-VPLLVES 125
Query: 120 ----AKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNA-DIV 174
A+ D+ ++VV DTQ+ R+M R+ + E I Q + + A D++
Sbjct: 126 RNWKARCDR----VLVVDCPVDTQIARVMQRNGFTREQVEAIIARQATREARLAAADDVI 181
Query: 175 INNTGTLDDLNEQV 188
+N+ T D L QV
Sbjct: 182 VNDAATPDALAVQV 195
>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase (coa
Synthase): (18044849) From Mus Musculus At 1.70 A
Resolution
Length = 281
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 6/165 (3%)
Query: 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLP 60
+ ++GLTG SGKS+V+ K ++D+D + G ++ VV AFG DIL
Sbjct: 75 LYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHK 134
Query: 61 NGEVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEA 120
+G ++R LG VF + + ++L ++ P I+ E+ KG + V+D +L EA
Sbjct: 135 DGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA 194
Query: 121 KMDKWTKPIVVVW--VDPDTQ-LQRLMARDRTSEEDARNRINAQM 162
W + VW V P+T+ ++R++ RD SE A++R+ +QM
Sbjct: 195 ---GWQSMVHEVWTVVIPETEAVRRIVERDGLSEAAAQSRLQSQM 236
>pdb|1UF9|A Chain A, Crystal Structure Of Tt1252 From Thermus Thermophilus
pdb|1UF9|B Chain B, Crystal Structure Of Tt1252 From Thermus Thermophilus
pdb|1UF9|C Chain C, Crystal Structure Of Tt1252 From Thermus Thermophilus
Length = 203
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 8/182 (4%)
Query: 14 KSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIV 73
KSTV+ L ++ PV+D D +A + K++ F E ++ G +DR L ++V
Sbjct: 21 KSTVAALLRSWGYPVLDLDALAARARENKEEELKRL---FPEAVV--GGRLDRRALARLV 75
Query: 74 FSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVW 133
FSD + + L ++ P + + +L ++ L++PLLFE + ++V
Sbjct: 76 FSDPERLKALEAVVHPEVR---RLLXEELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVA 132
Query: 134 VDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLF 193
+ +++R+ AR S E+ R AQ P + KR A V+ NTG+L+DL ++ VL
Sbjct: 133 APLEERVRRVXARSGLSREEVLARERAQXPEEEKRKRATWVLENTGSLEDLERALKAVLA 192
Query: 194 EI 195
E+
Sbjct: 193 EL 194
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 27/193 (13%)
Query: 3 IVGLTGGISSGKSTVSNLFKAN-DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPN 61
++G+TG I +GKSTV + K VV+ D I +VL++ +K+V FG + L +
Sbjct: 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVK---EKLVELFGGSV-LED 69
Query: 62 GEVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAK 121
G+V+R KL IVF + L L+ P V ++ K +IV++ LL
Sbjct: 70 GKVNRKKLAGIVFESRENLKKLELLVHPLXK----KRVQEIINKTSGLIVIEAALLKRXG 125
Query: 122 MDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQ---MPLDIKRNNADIVINNT 178
+D+ ++ V +T L+R DR R+ Q +P IV+ N
Sbjct: 126 LDQLCDHVITVVASRETILKRNREADR--------RLKFQEDIVP-------QGIVVANN 170
Query: 179 GTLDDLNEQVRKV 191
TL+DL ++V +V
Sbjct: 171 STLEDLEKKVEEV 183
>pdb|3JYV|C Chain C, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 188
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 57 ILLPNGEVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPL 116
I+L V L + ++S K +LLNGL + G+ V++ KGC+V+V
Sbjct: 79 IVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLR 138
Query: 117 LFEAKMDKWTKPIVVVWVDP-----DTQLQRLMARD 147
AK K+ ++ P DT + ++ R
Sbjct: 139 AARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQ 174
>pdb|1S1H|C Chain C, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 192
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 57 ILLPNGEVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPL 116
I+L V L + ++S K +LLNGL + G+ V++ KGC+V+V
Sbjct: 83 IVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLR 142
Query: 117 LFEAKMDKWTKPIVVVWVDP-----DTQLQRLMARD 147
AK K+ ++ P DT + ++ R
Sbjct: 143 AARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQ 178
>pdb|3IZB|B Chain B, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|D Chain D, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|D Chain D, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 240
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 69 LGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIV 111
L + ++S K +LLNGL + G+ V++ KGC+V+V
Sbjct: 96 LSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVV 138
>pdb|2PJU|A Chain A, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
pdb|2PJU|B Chain B, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
pdb|2PJU|C Chain C, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
pdb|2PJU|D Chain D, Crystal Structure Of Propionate Catabolism Operon
Regulatory Protein Prpr
Length = 225
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 116 LLFEAKMDKWTKPI-VVVWVDPDTQL--------QRLMARDRTSEEDARNRINAQMPLDI 166
L F AK K T I VV + + L RL R +EEDAR +IN ++
Sbjct: 96 LQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQIN-----EL 150
Query: 167 KRNNADIVINNTGTLDDLNEQV 188
K N + V+ G + DL E+
Sbjct: 151 KANGTEAVV-GAGLITDLAEEA 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,495,348
Number of Sequences: 62578
Number of extensions: 264436
Number of successful extensions: 621
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 22
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)