Query 026952
Match_columns 230
No_of_seqs 122 out of 1332
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 02:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02422 dephospho-CoA kinase 100.0 1.7E-43 3.7E-48 284.7 24.0 228 1-228 1-228 (232)
2 KOG3220 Similar to bacterial d 100.0 1.7E-39 3.7E-44 249.3 22.4 215 1-219 1-215 (225)
3 PTZ00451 dephospho-CoA kinase; 100.0 3.7E-37 8E-42 250.2 25.5 222 1-222 1-239 (244)
4 PRK14734 coaE dephospho-CoA ki 100.0 5.1E-36 1.1E-40 238.5 23.6 199 1-199 1-199 (200)
5 PRK00081 coaE dephospho-CoA ki 100.0 1.2E-35 2.6E-40 235.6 21.6 192 1-194 2-193 (194)
6 PF01121 CoaE: Dephospho-CoA k 100.0 2.7E-36 5.9E-41 235.4 17.3 180 2-183 1-180 (180)
7 PRK14730 coaE dephospho-CoA ki 100.0 2E-35 4.2E-40 234.2 21.3 191 1-193 1-193 (195)
8 PRK14732 coaE dephospho-CoA ki 100.0 5.5E-35 1.2E-39 231.5 22.1 192 3-196 1-192 (196)
9 PRK14733 coaE dephospho-CoA ki 100.0 7.8E-35 1.7E-39 230.8 21.8 193 1-198 6-202 (204)
10 COG0237 CoaE Dephospho-CoA kin 100.0 4.5E-34 9.8E-39 225.8 20.0 195 1-198 2-196 (201)
11 PRK14731 coaE dephospho-CoA ki 100.0 7.6E-33 1.6E-37 221.7 23.1 195 2-196 6-204 (208)
12 cd02022 DPCK Dephospho-coenzym 100.0 4E-32 8.7E-37 212.9 18.7 178 3-182 1-178 (179)
13 TIGR00152 dephospho-CoA kinase 100.0 8.4E-32 1.8E-36 212.7 19.6 186 3-189 1-187 (188)
14 PRK03333 coaE dephospho-CoA ki 100.0 3.9E-31 8.5E-36 229.9 22.9 196 1-198 1-196 (395)
15 PRK01184 hypothetical protein; 99.8 1.1E-19 2.3E-24 142.9 17.0 170 1-198 1-182 (184)
16 COG1102 Cmk Cytidylate kinase 99.8 2E-19 4.4E-24 134.4 15.2 162 2-198 1-176 (179)
17 TIGR00017 cmk cytidylate kinas 99.8 6.2E-18 1.3E-22 136.0 20.3 187 2-191 3-216 (217)
18 PRK05480 uridine/cytidine kina 99.8 6.4E-19 1.4E-23 141.3 10.5 181 2-193 7-207 (209)
19 PRK08356 hypothetical protein; 99.8 3.1E-18 6.8E-23 135.9 14.3 177 1-195 5-193 (195)
20 COG0283 Cmk Cytidylate kinase 99.8 9.3E-17 2E-21 126.0 19.9 189 2-193 5-218 (222)
21 COG0572 Udk Uridine kinase [Nu 99.7 1.3E-17 2.9E-22 131.9 11.2 167 2-179 9-191 (218)
22 PRK06696 uridine kinase; Valid 99.7 3E-18 6.4E-23 138.8 6.3 169 1-180 22-212 (223)
23 PTZ00301 uridine kinase; Provi 99.7 1.3E-17 2.8E-22 133.4 9.5 185 2-197 4-208 (210)
24 KOG3079 Uridylate kinase/adeny 99.7 1E-16 2.2E-21 122.5 13.4 164 2-194 9-193 (195)
25 PRK04182 cytidylate kinase; Pr 99.7 7.8E-16 1.7E-20 120.1 17.7 162 2-197 1-176 (180)
26 PRK07667 uridine kinase; Provi 99.7 2.2E-18 4.7E-23 136.6 3.2 165 2-176 18-193 (193)
27 TIGR02173 cyt_kin_arch cytidyl 99.7 1.9E-15 4.1E-20 117.1 17.1 156 2-192 1-170 (171)
28 PLN02200 adenylate kinase fami 99.7 1.5E-15 3.2E-20 123.7 14.9 166 2-197 44-227 (234)
29 TIGR01360 aden_kin_iso1 adenyl 99.7 3.1E-15 6.8E-20 117.6 15.0 165 1-194 3-187 (188)
30 TIGR01359 UMP_CMP_kin_fam UMP- 99.7 1.8E-15 3.8E-20 118.7 13.1 160 3-192 1-182 (183)
31 COG1936 Predicted nucleotide k 99.7 1.4E-15 3.1E-20 115.4 11.9 150 2-194 1-156 (180)
32 PRK13477 bifunctional pantoate 99.7 1.2E-14 2.6E-19 129.4 19.5 194 1-198 284-507 (512)
33 PRK14737 gmk guanylate kinase; 99.7 1.7E-16 3.7E-21 124.8 6.6 66 128-194 118-184 (186)
34 PRK13808 adenylate kinase; Pro 99.6 4.1E-15 8.9E-20 125.7 14.5 167 3-198 2-197 (333)
35 PRK14531 adenylate kinase; Pro 99.6 7.8E-15 1.7E-19 115.3 14.8 161 2-192 3-182 (183)
36 PRK02496 adk adenylate kinase; 99.6 6.8E-15 1.5E-19 115.6 14.2 164 1-193 1-183 (184)
37 PRK14528 adenylate kinase; Pro 99.6 6.1E-15 1.3E-19 116.2 13.8 162 1-191 1-185 (186)
38 PRK14532 adenylate kinase; Pro 99.6 1.7E-14 3.6E-19 113.8 15.0 162 3-193 2-186 (188)
39 PRK13949 shikimate kinase; Pro 99.6 1.1E-14 2.3E-19 113.0 13.7 153 1-190 1-167 (169)
40 cd02023 UMPK Uridine monophosp 99.6 1.9E-15 4.2E-20 120.1 9.5 169 3-182 1-185 (198)
41 PF00485 PRK: Phosphoribulokin 99.6 2.2E-16 4.7E-21 125.2 4.0 166 3-179 1-189 (194)
42 COG0703 AroK Shikimate kinase 99.6 8.9E-15 1.9E-19 112.0 11.7 156 1-195 2-169 (172)
43 COG0194 Gmk Guanylate kinase [ 99.6 1.6E-15 3.4E-20 116.7 7.6 173 2-194 5-182 (191)
44 cd02026 PRK Phosphoribulokinas 99.6 1E-15 2.2E-20 127.2 6.6 164 3-179 1-178 (273)
45 PLN02674 adenylate kinase 99.6 2.2E-14 4.7E-19 116.8 14.1 162 2-192 32-243 (244)
46 PRK00279 adk adenylate kinase; 99.6 1.6E-14 3.5E-19 116.3 12.9 163 3-194 2-214 (215)
47 PRK04040 adenylate kinase; Pro 99.6 6.2E-14 1.3E-18 110.5 15.6 161 1-192 2-187 (188)
48 PRK07429 phosphoribulokinase; 99.6 3E-15 6.5E-20 127.1 8.6 165 2-179 9-187 (327)
49 PRK08233 hypothetical protein; 99.6 9.2E-15 2E-19 114.3 10.6 159 2-194 4-177 (182)
50 PLN02348 phosphoribulokinase 99.6 3.6E-15 7.9E-20 127.8 8.8 163 2-177 50-243 (395)
51 PRK14527 adenylate kinase; Pro 99.6 3.7E-14 8.1E-19 112.1 13.8 161 2-192 7-190 (191)
52 PRK00023 cmk cytidylate kinase 99.6 3E-13 6.4E-18 109.6 19.3 190 3-196 6-223 (225)
53 TIGR01351 adk adenylate kinase 99.6 3.7E-14 8.1E-19 113.8 13.9 161 4-192 2-209 (210)
54 PRK13947 shikimate kinase; Pro 99.6 2.1E-14 4.7E-19 111.3 12.1 156 1-193 1-167 (171)
55 TIGR00235 udk uridine kinase. 99.6 9.4E-15 2E-19 117.0 10.0 182 2-194 7-204 (207)
56 PRK13946 shikimate kinase; Pro 99.6 8.9E-14 1.9E-18 109.4 14.8 157 2-198 11-180 (184)
57 PRK09518 bifunctional cytidyla 99.6 2E-13 4.3E-18 127.6 19.4 199 1-202 1-239 (712)
58 PRK13948 shikimate kinase; Pro 99.6 9.4E-14 2E-18 108.7 14.4 153 3-195 12-176 (182)
59 PRK10078 ribose 1,5-bisphospho 99.6 2.2E-14 4.8E-19 113.0 10.8 66 127-196 112-178 (186)
60 PLN02459 probable adenylate ki 99.6 6.1E-14 1.3E-18 114.8 13.6 165 3-194 31-251 (261)
61 PRK03839 putative kinase; Prov 99.6 1.1E-13 2.3E-18 108.5 14.5 155 3-204 2-167 (180)
62 PRK06547 hypothetical protein; 99.6 2.4E-14 5.2E-19 111.2 9.3 147 1-176 15-171 (172)
63 PRK03731 aroL shikimate kinase 99.5 9.5E-14 2.1E-18 107.8 12.6 153 1-193 2-169 (171)
64 KOG3347 Predicted nucleotide k 99.5 3.2E-14 7E-19 105.2 9.0 117 2-161 8-127 (176)
65 PRK11860 bifunctional 3-phosph 99.5 5.9E-13 1.3E-17 123.4 19.2 188 2-194 443-655 (661)
66 cd02020 CMPK Cytidine monophos 99.5 5.1E-13 1.1E-17 100.7 15.0 134 3-178 1-147 (147)
67 COG0563 Adk Adenylate kinase a 99.5 4.6E-13 9.9E-18 104.5 15.1 159 2-192 1-177 (178)
68 PRK14530 adenylate kinase; Pro 99.5 2.6E-13 5.6E-18 109.3 13.8 160 3-194 5-213 (215)
69 PRK14526 adenylate kinase; Pro 99.5 3E-13 6.4E-18 108.4 14.0 163 3-194 2-209 (211)
70 PRK09270 nucleoside triphospha 99.5 4.2E-14 9.1E-19 115.0 9.2 75 106-180 136-223 (229)
71 PRK00131 aroK shikimate kinase 99.5 9E-13 1.9E-17 102.2 16.1 155 1-194 4-171 (175)
72 PTZ00088 adenylate kinase 1; P 99.5 2.9E-13 6.3E-18 109.7 13.8 120 1-147 6-131 (229)
73 cd02025 PanK Pantothenate kina 99.5 3.4E-14 7.4E-19 114.7 7.5 164 3-178 1-210 (220)
74 PRK05057 aroK shikimate kinase 99.5 6E-13 1.3E-17 103.5 13.4 152 2-193 5-170 (172)
75 PRK06762 hypothetical protein; 99.5 1.3E-12 2.8E-17 100.9 15.2 145 2-193 3-163 (166)
76 PRK00625 shikimate kinase; Pro 99.5 4.2E-13 9.1E-18 104.3 12.0 38 2-39 1-39 (173)
77 PRK08154 anaerobic benzoate ca 99.5 8.6E-13 1.9E-17 111.8 14.5 156 2-196 134-303 (309)
78 cd02024 NRK1 Nicotinamide ribo 99.5 4.5E-14 9.6E-19 110.8 6.1 136 3-149 1-154 (187)
79 PRK06217 hypothetical protein; 99.5 7.8E-13 1.7E-17 103.9 12.9 103 1-147 1-105 (183)
80 TIGR02322 phosphon_PhnN phosph 99.5 2.1E-13 4.6E-18 106.6 9.6 64 128-193 113-177 (179)
81 cd02028 UMPK_like Uridine mono 99.5 2.8E-14 6.1E-19 111.7 4.4 159 3-176 1-178 (179)
82 PLN02199 shikimate kinase 99.5 1E-12 2.2E-17 108.9 13.7 160 3-198 104-292 (303)
83 PRK13973 thymidylate kinase; P 99.5 3.4E-12 7.3E-17 102.7 16.0 171 2-196 4-208 (213)
84 PRK00698 tmk thymidylate kinas 99.5 4.5E-12 9.7E-17 101.0 16.7 72 125-196 127-204 (205)
85 PLN02842 nucleotide kinase 99.5 1.1E-12 2.4E-17 116.2 13.9 165 6-198 2-206 (505)
86 cd02029 PRK_like Phosphoribulo 99.5 2.3E-13 4.9E-18 111.3 8.5 165 3-175 1-199 (277)
87 PRK14529 adenylate kinase; Pro 99.5 2E-12 4.4E-17 104.1 13.7 160 3-192 2-222 (223)
88 PRK12269 bifunctional cytidyla 99.5 1E-11 2.2E-16 116.9 20.2 189 2-194 35-285 (863)
89 PLN02318 phosphoribulokinase/u 99.5 1.8E-13 3.8E-18 122.4 8.0 159 2-177 66-238 (656)
90 cd01428 ADK Adenylate kinase ( 99.4 1.3E-12 2.9E-17 103.1 10.9 116 3-147 1-126 (194)
91 PRK05439 pantothenate kinase; 99.4 3.4E-13 7.5E-18 113.3 7.7 165 2-179 87-299 (311)
92 smart00072 GuKc Guanylate kina 99.4 7.1E-13 1.5E-17 104.2 7.7 87 107-194 93-182 (184)
93 TIGR01313 therm_gnt_kin carboh 99.4 9.6E-12 2.1E-16 95.7 13.2 152 4-192 1-161 (163)
94 PRK05541 adenylylsulfate kinas 99.4 2.7E-12 5.8E-17 100.1 10.2 84 107-192 78-170 (176)
95 TIGR00554 panK_bact pantothena 99.4 1.1E-12 2.5E-17 109.4 7.7 166 1-179 62-279 (290)
96 COG3709 Uncharacterized compon 99.4 1.3E-11 2.9E-16 92.6 12.4 86 106-193 93-181 (192)
97 TIGR00041 DTMP_kinase thymidyl 99.4 2.5E-11 5.5E-16 96.0 14.7 62 126-188 128-195 (195)
98 TIGR03263 guanyl_kin guanylate 99.4 1.4E-12 3.1E-17 101.9 7.4 65 128-193 114-179 (180)
99 cd00464 SK Shikimate kinase (S 99.4 9.2E-12 2E-16 94.6 11.7 137 4-179 2-149 (154)
100 PRK14738 gmk guanylate kinase; 99.4 1.2E-12 2.5E-17 104.8 6.9 70 126-195 123-195 (206)
101 COG0125 Tmk Thymidylate kinase 99.4 5.5E-11 1.2E-15 94.8 16.3 172 1-197 3-206 (208)
102 PRK14021 bifunctional shikimat 99.4 1.3E-11 2.8E-16 112.0 13.8 153 2-194 7-176 (542)
103 COG3265 GntK Gluconate kinase 99.4 2.4E-11 5.2E-16 90.0 12.7 150 7-194 1-159 (161)
104 PRK15453 phosphoribulokinase; 99.4 3.8E-12 8.3E-17 104.9 9.3 167 2-175 6-205 (290)
105 PF03668 ATP_bind_2: P-loop AT 99.3 1.2E-11 2.7E-16 101.7 11.8 145 1-193 1-155 (284)
106 cd01672 TMPK Thymidine monopho 99.3 8.3E-11 1.8E-15 92.9 15.7 69 125-193 125-199 (200)
107 PRK00300 gmk guanylate kinase; 99.3 2.7E-11 5.9E-16 96.6 12.4 67 128-195 118-185 (205)
108 PRK08118 topology modulation p 99.3 7.5E-12 1.6E-16 96.9 8.7 36 1-36 1-37 (167)
109 cd00227 CPT Chloramphenicol (C 99.3 8.6E-11 1.9E-15 91.6 14.5 161 2-192 3-174 (175)
110 PF00406 ADK: Adenylate kinase 99.3 3.8E-11 8.2E-16 91.3 10.9 124 6-161 1-135 (151)
111 PRK13974 thymidylate kinase; P 99.2 2E-10 4.4E-15 92.3 13.0 71 126-196 135-208 (212)
112 PRK05416 glmZ(sRNA)-inactivati 99.2 3E-10 6.5E-15 95.0 14.3 67 128-194 88-160 (288)
113 PHA02530 pseT polynucleotide k 99.2 1.3E-10 2.9E-15 98.0 12.4 38 1-38 2-41 (300)
114 PF01202 SKI: Shikimate kinase 99.2 7E-11 1.5E-15 90.6 9.7 145 10-193 1-158 (158)
115 PF00625 Guanylate_kin: Guanyl 99.2 4.5E-12 9.8E-17 99.5 3.0 67 127-194 115-182 (183)
116 PRK13975 thymidylate kinase; P 99.2 9.6E-10 2.1E-14 87.0 15.6 70 125-194 113-190 (196)
117 KOG3354 Gluconate kinase [Carb 99.2 5E-10 1.1E-14 83.6 12.7 156 3-194 14-188 (191)
118 cd02021 GntK Gluconate kinase 99.2 2.2E-10 4.9E-15 86.8 11.3 35 3-37 1-36 (150)
119 KOG3308 Uncharacterized protei 99.2 4.4E-11 9.5E-16 92.9 6.9 133 3-148 6-150 (225)
120 TIGR03574 selen_PSTK L-seryl-t 99.2 7.5E-10 1.6E-14 91.1 14.7 67 128-194 98-169 (249)
121 PRK13976 thymidylate kinase; P 99.2 2.1E-09 4.5E-14 86.2 16.2 71 125-196 124-203 (209)
122 PRK07933 thymidylate kinase; V 99.2 7.5E-10 1.6E-14 89.0 13.6 68 125-192 132-211 (213)
123 PLN02772 guanylate kinase 99.1 1.8E-10 4E-15 99.1 9.1 66 128-194 249-318 (398)
124 PF13671 AAA_33: AAA domain; P 99.1 2.4E-10 5.1E-15 85.8 8.5 37 3-39 1-38 (143)
125 PRK13951 bifunctional shikimat 99.1 5.5E-10 1.2E-14 100.0 11.8 35 3-37 2-37 (488)
126 PLN02924 thymidylate kinase 99.1 4.1E-09 9E-14 85.0 15.6 70 125-197 135-206 (220)
127 PF13207 AAA_17: AAA domain; P 99.1 2.8E-10 6E-15 83.0 8.0 33 3-35 1-34 (121)
128 PRK11545 gntK gluconate kinase 99.1 3.1E-09 6.7E-14 81.9 14.1 67 128-196 93-162 (163)
129 cd02030 NDUO42 NADH:Ubiquinone 99.1 1.5E-09 3.3E-14 87.6 12.8 65 126-190 143-217 (219)
130 PRK09825 idnK D-gluconate kina 99.1 8.5E-09 1.8E-13 80.5 16.1 69 128-198 101-172 (176)
131 PF02223 Thymidylate_kin: Thym 99.1 2.4E-09 5.1E-14 84.2 12.8 62 125-188 118-186 (186)
132 PRK12339 2-phosphoglycerate ki 99.1 2.6E-09 5.7E-14 84.7 12.9 39 1-39 3-42 (197)
133 COG1660 Predicted P-loop-conta 99.1 1.6E-10 3.6E-15 93.1 5.9 151 1-194 1-157 (286)
134 COG4088 Predicted nucleotide k 99.1 2E-09 4.4E-14 84.2 11.5 64 127-190 103-169 (261)
135 PRK07261 topology modulation p 99.1 5.9E-10 1.3E-14 86.6 8.2 96 2-147 1-100 (171)
136 PRK12338 hypothetical protein; 99.1 1.2E-08 2.7E-13 86.0 15.8 38 2-39 5-43 (319)
137 PRK03846 adenylylsulfate kinas 99.0 5E-09 1.1E-13 83.3 12.5 34 2-35 25-64 (198)
138 PF13238 AAA_18: AAA domain; P 99.0 1.3E-09 2.9E-14 79.9 8.6 49 106-155 72-121 (129)
139 COG1428 Deoxynucleoside kinase 99.0 1E-08 2.2E-13 80.8 13.8 30 1-30 4-34 (216)
140 COG2019 AdkA Archaeal adenylat 99.0 1.8E-08 3.9E-13 76.4 13.8 161 1-194 4-188 (189)
141 COG0529 CysC Adenylylsulfate k 99.0 4.6E-08 1E-12 74.9 15.5 37 2-38 24-66 (197)
142 PF07931 CPT: Chloramphenicol 99.0 3.4E-09 7.3E-14 82.2 9.6 159 2-192 2-173 (174)
143 PRK00889 adenylylsulfate kinas 99.0 4.4E-09 9.5E-14 81.9 9.7 34 2-35 5-44 (175)
144 COG1072 CoaA Panthothenate kin 98.9 1.3E-09 2.9E-14 88.9 5.0 132 1-147 82-232 (283)
145 TIGR00455 apsK adenylylsulfate 98.9 4E-08 8.7E-13 77.1 12.8 34 2-35 19-58 (184)
146 PRK05537 bifunctional sulfate 98.9 2.5E-08 5.4E-13 90.9 13.2 147 3-193 394-561 (568)
147 cd01673 dNK Deoxyribonucleosid 98.8 6E-08 1.3E-12 76.6 11.8 27 3-29 1-28 (193)
148 PRK04220 2-phosphoglycerate ki 98.7 2.1E-07 4.7E-12 77.9 12.7 36 1-36 92-129 (301)
149 PF08433 KTI12: Chromatin asso 98.7 3.9E-07 8.3E-12 75.8 13.7 135 1-177 1-155 (270)
150 PF01583 APS_kinase: Adenylyls 98.7 8.5E-08 1.8E-12 72.9 8.6 36 2-37 3-44 (156)
151 PF13189 Cytidylate_kin2: Cyti 98.7 2.2E-07 4.7E-12 72.7 10.8 162 3-178 1-178 (179)
152 PRK05506 bifunctional sulfate 98.7 1.5E-07 3.3E-12 87.3 11.4 151 1-194 460-628 (632)
153 TIGR03575 selen_PSTK_euk L-ser 98.6 3.6E-07 7.7E-12 78.1 11.2 34 3-36 1-41 (340)
154 COG0645 Predicted kinase [Gene 98.6 1.4E-06 2.9E-11 66.5 12.2 115 2-148 2-126 (170)
155 COG2074 2-phosphoglycerate kin 98.6 2.7E-06 5.9E-11 68.8 14.4 37 2-39 90-128 (299)
156 PF06414 Zeta_toxin: Zeta toxi 98.6 5.2E-07 1.1E-11 71.8 10.0 37 1-37 15-55 (199)
157 KOG3877 NADH:ubiquinone oxidor 98.6 8.7E-07 1.9E-11 72.4 11.1 34 2-35 72-109 (393)
158 COG4639 Predicted kinase [Gene 98.6 5E-07 1.1E-11 67.8 8.7 118 2-158 3-130 (168)
159 cd02027 APSK Adenosine 5'-phos 98.5 2.8E-07 6.2E-12 69.9 7.1 34 3-36 1-40 (149)
160 TIGR01663 PNK-3'Pase polynucle 98.5 1.2E-06 2.7E-11 78.9 10.9 33 2-34 370-403 (526)
161 PHA00729 NTP-binding motif con 98.4 1.5E-06 3.2E-11 70.0 8.5 30 125-155 118-147 (226)
162 PRK12337 2-phosphoglycerate ki 98.4 2.3E-05 4.9E-10 69.3 16.5 36 1-36 255-292 (475)
163 KOG0707 Guanylate kinase [Nucl 98.4 2.4E-06 5.3E-11 68.2 8.9 65 129-193 152-220 (231)
164 cd00071 GMPK Guanosine monopho 98.4 2.1E-07 4.6E-12 69.6 2.5 21 3-23 1-21 (137)
165 KOG3078 Adenylate kinase [Nucl 98.4 1.1E-06 2.3E-11 70.8 6.6 52 3-54 17-69 (235)
166 PLN02165 adenylate isopentenyl 98.3 3.2E-06 6.9E-11 71.8 8.8 32 3-34 45-77 (334)
167 TIGR01223 Pmev_kin_anim phosph 98.3 2.7E-05 5.9E-10 60.0 12.8 167 3-196 1-179 (182)
168 COG1703 ArgK Putative periplas 98.3 3.7E-06 8.1E-11 69.7 8.0 32 2-33 52-89 (323)
169 KOG3327 Thymidylate kinase/ade 98.3 1.6E-05 3.6E-10 61.4 10.8 72 126-198 125-199 (208)
170 cd02019 NK Nucleoside/nucleoti 98.2 1.1E-06 2.4E-11 57.7 3.5 21 3-23 1-21 (69)
171 PHA03132 thymidine kinase; Pro 98.2 9.7E-06 2.1E-10 73.5 10.4 31 1-31 257-288 (580)
172 PHA02575 1 deoxynucleoside mon 98.2 1.8E-06 3.9E-11 69.1 4.6 37 2-38 1-38 (227)
173 KOG2702 Predicted panthothenat 98.2 1E-06 2.3E-11 70.3 2.6 53 107-159 235-297 (323)
174 PF13521 AAA_28: AAA domain; P 98.1 2.4E-06 5.2E-11 65.6 2.8 35 3-39 1-35 (163)
175 PF00004 AAA: ATPase family as 98.0 5.7E-06 1.2E-10 60.6 3.8 30 4-33 1-31 (132)
176 PRK00091 miaA tRNA delta(2)-is 98.0 6.8E-06 1.5E-10 69.6 4.4 32 2-33 5-37 (307)
177 PF03308 ArgK: ArgK protein; 98.0 7.1E-06 1.5E-10 67.0 4.3 32 2-33 30-67 (266)
178 COG3911 Predicted ATPase [Gene 98.0 8.1E-06 1.7E-10 61.0 4.0 30 1-30 9-38 (183)
179 PRK05800 cobU adenosylcobinami 97.9 8.3E-06 1.8E-10 63.2 3.6 33 1-33 1-36 (170)
180 COG1618 Predicted nucleotide k 97.9 1.2E-05 2.7E-10 60.8 3.9 22 1-22 5-26 (179)
181 PF02224 Cytidylate_kin: Cytid 97.9 0.00048 1E-08 52.3 12.3 101 87-190 44-157 (157)
182 COG4185 Uncharacterized protei 97.9 7.4E-05 1.6E-09 56.6 7.4 37 3-39 4-43 (187)
183 PLN02840 tRNA dimethylallyltra 97.8 1.8E-05 3.9E-10 69.3 4.3 32 2-33 22-54 (421)
184 PLN02796 D-glycerate 3-kinase 97.8 1.9E-05 4.2E-10 67.4 3.9 35 2-36 101-141 (347)
185 PF10662 PduV-EutP: Ethanolami 97.8 1.7E-05 3.6E-10 59.4 3.1 23 1-23 1-23 (143)
186 PLN03046 D-glycerate 3-kinase; 97.8 1.9E-05 4.2E-10 68.8 3.8 36 1-36 212-253 (460)
187 PF01591 6PF2K: 6-phosphofruct 97.8 0.00078 1.7E-08 54.4 12.6 38 3-40 14-57 (222)
188 KOG0609 Calcium/calmodulin-dep 97.8 0.00017 3.6E-09 63.9 9.3 179 2-201 341-535 (542)
189 KOG0635 Adenosine 5'-phosphosu 97.8 0.00015 3.2E-09 54.5 7.5 36 3-38 33-74 (207)
190 TIGR00174 miaA tRNA isopenteny 97.8 2.5E-05 5.3E-10 65.4 3.8 31 3-33 1-32 (287)
191 KOG3062 RNA polymerase II elon 97.8 0.00048 1E-08 55.1 10.7 22 1-22 1-22 (281)
192 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00016 3.5E-09 65.4 8.9 28 4-31 226-254 (802)
193 PRK06761 hypothetical protein; 97.7 3.5E-05 7.5E-10 64.3 3.7 24 2-25 4-28 (282)
194 PRK08099 bifunctional DNA-bind 97.6 5.3E-05 1.1E-09 66.5 4.0 30 1-30 219-249 (399)
195 PF01745 IPT: Isopentenyl tran 97.6 4.8E-05 1E-09 60.4 3.3 34 1-34 1-35 (233)
196 cd01918 HprK_C HprK/P, the bif 97.6 7.5E-05 1.6E-09 56.4 3.9 30 4-33 17-46 (149)
197 smart00382 AAA ATPases associa 97.6 5.8E-05 1.3E-09 55.0 3.2 21 2-22 3-23 (148)
198 PRK10751 molybdopterin-guanine 97.6 6E-05 1.3E-09 58.4 3.3 22 1-22 6-27 (173)
199 PLN02748 tRNA dimethylallyltra 97.6 6.6E-05 1.4E-09 66.9 3.8 32 2-33 23-55 (468)
200 PF05496 RuvB_N: Holliday junc 97.6 8.3E-05 1.8E-09 59.7 3.9 29 3-31 52-81 (233)
201 COG1126 GlnQ ABC-type polar am 97.6 5.9E-05 1.3E-09 60.0 3.1 20 3-22 30-49 (240)
202 PTZ00322 6-phosphofructo-2-kin 97.6 0.00096 2.1E-08 62.5 11.6 37 2-38 216-258 (664)
203 cd03116 MobB Molybdenum is an 97.6 7.6E-05 1.6E-09 57.2 3.5 22 1-22 1-22 (159)
204 KOG1384 tRNA delta(2)-isopente 97.5 0.00042 9.1E-09 58.3 8.0 33 2-34 8-41 (348)
205 cd00820 PEPCK_HprK Phosphoenol 97.5 0.0001 2.2E-09 52.5 3.8 21 2-22 16-36 (107)
206 COG4619 ABC-type uncharacteriz 97.5 8.3E-05 1.8E-09 57.0 3.0 21 3-23 31-51 (223)
207 COG1136 SalX ABC-type antimicr 97.5 9.1E-05 2E-09 59.7 3.2 20 3-22 33-52 (226)
208 smart00763 AAA_PrkA PrkA AAA d 97.5 8.4E-05 1.8E-09 63.9 3.2 21 2-22 79-99 (361)
209 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00012 2.7E-09 54.2 3.6 25 2-26 23-48 (133)
210 KOG4203 Armadillo/beta-Catenin 97.5 5.4E-05 1.2E-09 67.6 1.8 181 1-190 44-252 (473)
211 PF13555 AAA_29: P-loop contai 97.5 0.00014 3.1E-09 46.4 3.2 20 3-22 25-44 (62)
212 COG1116 TauB ABC-type nitrate/ 97.4 0.00011 2.3E-09 59.7 3.2 20 3-22 31-50 (248)
213 COG1763 MobB Molybdopterin-gua 97.4 0.00013 2.8E-09 55.8 3.4 28 1-28 2-33 (161)
214 KOG0744 AAA+-type ATPase [Post 97.4 0.0001 2.2E-09 61.9 3.0 25 2-26 178-203 (423)
215 COG1124 DppF ABC-type dipeptid 97.4 0.00013 2.7E-09 59.0 3.1 20 3-22 35-54 (252)
216 TIGR01526 nadR_NMN_Atrans nico 97.4 0.00017 3.6E-09 61.8 4.1 30 1-30 162-192 (325)
217 PRK14493 putative bifunctional 97.4 0.00014 3E-09 60.7 3.4 22 1-22 1-22 (274)
218 PRK11784 tRNA 2-selenouridine 97.4 0.0008 1.7E-08 58.0 8.2 34 3-36 143-176 (345)
219 PF03029 ATP_bind_1: Conserved 97.4 0.00011 2.4E-09 60.0 2.5 30 6-35 1-36 (238)
220 TIGR00390 hslU ATP-dependent p 97.4 0.00019 4E-09 62.9 3.8 32 2-33 48-80 (441)
221 PHA03136 thymidine kinase; Pro 97.3 0.0036 7.7E-08 54.1 11.4 23 126-148 192-214 (378)
222 PF13245 AAA_19: Part of AAA d 97.3 0.0002 4.3E-09 47.8 3.1 20 3-22 12-32 (76)
223 PF07728 AAA_5: AAA domain (dy 97.3 0.00018 4E-09 53.5 3.1 25 4-28 2-27 (139)
224 cd01131 PilT Pilus retraction 97.3 0.00018 4E-09 57.1 3.2 20 3-22 3-22 (198)
225 cd00009 AAA The AAA+ (ATPases 97.3 0.00025 5.5E-09 52.1 3.8 29 3-31 21-53 (151)
226 PF06564 YhjQ: YhjQ protein; 97.3 0.014 3.1E-07 47.7 14.2 32 1-32 1-39 (243)
227 PF05729 NACHT: NACHT domain 97.3 0.00018 4E-09 54.6 3.0 21 2-22 1-21 (166)
228 PF03205 MobB: Molybdopterin g 97.3 0.00026 5.6E-09 53.1 3.7 27 2-28 1-31 (140)
229 PF00005 ABC_tran: ABC transpo 97.3 0.00019 4.1E-09 53.1 2.8 20 3-22 13-32 (137)
230 PRK10867 signal recognition pa 97.3 0.00086 1.9E-08 59.4 7.3 34 2-35 101-141 (433)
231 COG1855 ATPase (PilT family) [ 97.3 0.00016 3.5E-09 63.2 2.5 20 4-23 266-285 (604)
232 PRK09087 hypothetical protein; 97.3 0.00033 7.2E-09 56.8 4.2 34 3-36 46-80 (226)
233 PLN00020 ribulose bisphosphate 97.3 0.00031 6.6E-09 60.6 4.1 31 1-31 148-179 (413)
234 COG0324 MiaA tRNA delta(2)-iso 97.3 0.00034 7.3E-09 58.9 4.3 34 1-34 3-37 (308)
235 COG3839 MalK ABC-type sugar tr 97.3 0.00022 4.8E-09 60.9 3.2 20 3-22 31-50 (338)
236 COG0378 HypB Ni2+-binding GTPa 97.3 0.0003 6.5E-09 55.1 3.6 36 1-36 13-53 (202)
237 PF00448 SRP54: SRP54-type pro 97.3 0.00026 5.7E-09 56.1 3.4 35 1-35 1-41 (196)
238 PF13173 AAA_14: AAA domain 97.2 0.00031 6.8E-09 51.6 3.6 34 2-35 3-41 (128)
239 PRK13768 GTPase; Provisional 97.2 0.00035 7.5E-09 57.7 4.2 33 1-33 2-40 (253)
240 PRK05201 hslU ATP-dependent pr 97.2 0.00028 6E-09 61.9 3.6 32 2-33 51-83 (443)
241 TIGR00960 3a0501s02 Type II (G 97.2 0.00026 5.7E-09 56.8 3.2 20 3-22 31-50 (216)
242 PRK14494 putative molybdopteri 97.2 0.00038 8.1E-09 56.5 4.0 22 1-22 1-22 (229)
243 TIGR01166 cbiO cobalt transpor 97.2 0.00028 6.1E-09 55.4 3.2 20 3-22 20-39 (190)
244 cd00544 CobU Adenosylcobinamid 97.2 0.00034 7.4E-09 54.2 3.5 24 3-26 1-25 (169)
245 cd03292 ABC_FtsE_transporter F 97.2 0.0003 6.4E-09 56.3 3.2 20 3-22 29-48 (214)
246 PRK13695 putative NTPase; Prov 97.2 0.0003 6.6E-09 54.5 3.2 21 2-22 1-21 (174)
247 COG3842 PotA ABC-type spermidi 97.2 0.00028 6E-09 60.6 3.2 20 3-22 33-52 (352)
248 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.0003 6.5E-09 56.5 3.2 20 3-22 32-51 (218)
249 cd03225 ABC_cobalt_CbiO_domain 97.2 0.00031 6.6E-09 56.1 3.2 20 3-22 29-48 (211)
250 KOG1532 GTPase XAB1, interacts 97.2 0.0022 4.8E-08 52.9 8.1 54 2-55 20-85 (366)
251 COG4240 Predicted kinase [Gene 97.2 0.00042 9E-09 55.6 3.8 37 1-37 50-93 (300)
252 cd03238 ABC_UvrA The excision 97.2 0.00031 6.8E-09 54.7 3.1 20 3-22 23-42 (176)
253 TIGR02881 spore_V_K stage V sp 97.2 0.00028 6E-09 58.5 2.9 20 3-22 44-63 (261)
254 TIGR02673 FtsE cell division A 97.2 0.00031 6.8E-09 56.2 3.2 20 3-22 30-49 (214)
255 PF03266 NTPase_1: NTPase; In 97.2 0.0003 6.6E-09 54.4 3.0 20 3-22 1-20 (168)
256 PF13401 AAA_22: AAA domain; P 97.2 0.00029 6.4E-09 51.5 2.8 20 3-22 6-25 (131)
257 COG1117 PstB ABC-type phosphat 97.2 0.00033 7.2E-09 55.7 3.1 21 3-23 35-55 (253)
258 TIGR00101 ureG urease accessor 97.2 0.00039 8.4E-09 55.3 3.5 22 1-22 1-22 (199)
259 cd04163 Era Era subfamily. Er 97.2 0.00041 8.8E-09 52.2 3.5 23 2-24 4-26 (168)
260 cd03222 ABC_RNaseL_inhibitor T 97.2 0.00033 7.2E-09 54.6 3.0 20 3-22 27-46 (177)
261 PRK14729 miaA tRNA delta(2)-is 97.2 0.00046 1E-08 58.2 4.1 33 2-34 5-37 (300)
262 cd03269 ABC_putative_ATPase Th 97.2 0.00035 7.6E-09 55.8 3.2 20 3-22 28-47 (210)
263 cd03261 ABC_Org_Solvent_Resist 97.2 0.00034 7.4E-09 56.9 3.2 20 3-22 28-47 (235)
264 cd03224 ABC_TM1139_LivF_branch 97.1 0.00034 7.3E-09 56.3 3.1 20 3-22 28-47 (222)
265 cd03293 ABC_NrtD_SsuB_transpor 97.1 0.00035 7.7E-09 56.2 3.2 20 3-22 32-51 (220)
266 cd03283 ABC_MutS-like MutS-lik 97.1 0.00036 7.8E-09 55.5 3.2 20 3-22 27-46 (199)
267 PRK14495 putative molybdopteri 97.1 0.00043 9.3E-09 60.9 3.8 28 1-28 1-32 (452)
268 PF02367 UPF0079: Uncharacteri 97.1 0.00051 1.1E-08 50.2 3.6 25 2-26 16-41 (123)
269 PF00910 RNA_helicase: RNA hel 97.1 0.00031 6.7E-09 50.1 2.5 19 4-22 1-19 (107)
270 cd03259 ABC_Carb_Solutes_like 97.1 0.00037 8E-09 55.8 3.2 20 3-22 28-47 (213)
271 COG2884 FtsE Predicted ATPase 97.1 0.00037 8E-09 54.5 3.0 20 3-22 30-49 (223)
272 cd03263 ABC_subfamily_A The AB 97.1 0.00037 8E-09 56.0 3.2 20 3-22 30-49 (220)
273 cd03226 ABC_cobalt_CbiO_domain 97.1 0.00037 8E-09 55.5 3.2 20 3-22 28-47 (205)
274 cd03256 ABC_PhnC_transporter A 97.1 0.00037 8E-09 56.8 3.2 20 3-22 29-48 (241)
275 cd03235 ABC_Metallic_Cations A 97.1 0.00035 7.6E-09 55.9 2.9 20 3-22 27-46 (213)
276 KOG0739 AAA+-type ATPase [Post 97.1 0.0011 2.5E-08 55.3 5.9 131 3-145 168-309 (439)
277 TIGR02315 ABC_phnC phosphonate 97.1 0.00039 8.4E-09 56.8 3.2 20 3-22 30-49 (243)
278 cd03229 ABC_Class3 This class 97.1 0.00042 9E-09 54.0 3.2 20 3-22 28-47 (178)
279 KOG0730 AAA+-type ATPase [Post 97.1 0.003 6.5E-08 57.8 9.0 31 1-31 468-499 (693)
280 cd03264 ABC_drug_resistance_li 97.1 0.00036 7.7E-09 55.8 2.9 20 3-22 27-46 (211)
281 TIGR00176 mobB molybdopterin-g 97.1 0.00047 1E-08 52.6 3.4 20 3-22 1-20 (155)
282 cd01130 VirB11-like_ATPase Typ 97.1 0.00042 9.1E-09 54.4 3.2 20 3-22 27-46 (186)
283 TIGR02211 LolD_lipo_ex lipopro 97.1 0.0004 8.7E-09 55.8 3.2 20 3-22 33-52 (221)
284 cd03260 ABC_PstB_phosphate_tra 97.1 0.00041 8.8E-09 56.1 3.2 20 3-22 28-47 (227)
285 cd03230 ABC_DR_subfamily_A Thi 97.1 0.00043 9.2E-09 53.7 3.2 20 3-22 28-47 (173)
286 cd03219 ABC_Mj1267_LivG_branch 97.1 0.00037 8.1E-09 56.6 3.0 20 3-22 28-47 (236)
287 cd01120 RecA-like_NTPases RecA 97.1 0.00035 7.6E-09 52.7 2.7 20 3-22 1-20 (165)
288 TIGR03608 L_ocin_972_ABC putat 97.1 0.00042 9.2E-09 55.1 3.2 20 3-22 26-45 (206)
289 cd03265 ABC_DrrA DrrA is the A 97.1 0.00042 9.2E-09 55.7 3.2 20 3-22 28-47 (220)
290 PRK11629 lolD lipoprotein tran 97.1 0.00042 9.1E-09 56.3 3.2 20 3-22 37-56 (233)
291 cd03223 ABCD_peroxisomal_ALDP 97.1 0.00045 9.7E-09 53.2 3.2 20 3-22 29-48 (166)
292 TIGR02640 gas_vesic_GvpN gas v 97.1 0.00052 1.1E-08 56.9 3.8 28 3-30 23-51 (262)
293 cd03262 ABC_HisP_GlnQ_permease 97.1 0.00044 9.5E-09 55.3 3.2 20 3-22 28-47 (213)
294 PF08477 Miro: Miro-like prote 97.1 0.00052 1.1E-08 49.3 3.3 22 3-24 1-22 (119)
295 PRK09435 membrane ATPase/prote 97.1 0.00048 1E-08 59.0 3.5 32 2-33 57-94 (332)
296 cd03258 ABC_MetN_methionine_tr 97.1 0.00044 9.5E-09 56.1 3.2 20 3-22 33-52 (233)
297 cd03257 ABC_NikE_OppD_transpor 97.1 0.00043 9.4E-09 55.9 3.1 20 3-22 33-52 (228)
298 PRK13541 cytochrome c biogenes 97.1 0.00046 1E-08 54.5 3.2 20 3-22 28-47 (195)
299 TIGR01650 PD_CobS cobaltochela 97.1 0.0005 1.1E-08 58.5 3.6 28 3-30 66-94 (327)
300 PF01926 MMR_HSR1: 50S ribosom 97.1 0.00046 9.9E-09 49.6 2.9 21 3-23 1-21 (116)
301 cd03296 ABC_CysA_sulfate_impor 97.1 0.00045 9.8E-09 56.3 3.2 20 3-22 30-49 (239)
302 TIGR03864 PQQ_ABC_ATP ABC tran 97.1 0.00046 1E-08 56.2 3.2 20 3-22 29-48 (236)
303 KOG4238 Bifunctional ATP sulfu 97.1 0.0012 2.5E-08 56.4 5.6 30 3-32 52-85 (627)
304 COG3840 ThiQ ABC-type thiamine 97.1 0.00048 1E-08 53.6 3.0 20 3-22 27-46 (231)
305 PF08303 tRNA_lig_kinase: tRNA 97.1 0.00044 9.4E-09 52.8 2.7 33 4-36 2-36 (168)
306 PRK03992 proteasome-activating 97.1 0.00054 1.2E-08 60.1 3.7 29 3-31 167-196 (389)
307 PRK15177 Vi polysaccharide exp 97.1 0.00048 1E-08 55.3 3.2 20 3-22 15-34 (213)
308 TIGR03410 urea_trans_UrtE urea 97.1 0.00047 1E-08 55.9 3.1 20 3-22 28-47 (230)
309 cd03115 SRP The signal recogni 97.1 0.00052 1.1E-08 53.1 3.2 32 3-34 2-39 (173)
310 PRK11248 tauB taurine transpor 97.1 0.00048 1E-08 56.9 3.2 20 3-22 29-48 (255)
311 cd03301 ABC_MalK_N The N-termi 97.1 0.0005 1.1E-08 55.0 3.2 20 3-22 28-47 (213)
312 PRK13540 cytochrome c biogenes 97.1 0.00051 1.1E-08 54.5 3.2 20 3-22 29-48 (200)
313 cd03247 ABCC_cytochrome_bd The 97.1 0.00052 1.1E-08 53.4 3.2 20 3-22 30-49 (178)
314 PRK10584 putative ABC transpor 97.0 0.0005 1.1E-08 55.6 3.2 20 3-22 38-57 (228)
315 cd03246 ABCC_Protease_Secretio 97.0 0.00053 1.2E-08 53.1 3.2 20 3-22 30-49 (173)
316 cd03266 ABC_NatA_sodium_export 97.0 0.0005 1.1E-08 55.2 3.2 20 3-22 33-52 (218)
317 cd03218 ABC_YhbG The ABC trans 97.0 0.0005 1.1E-08 55.7 3.2 20 3-22 28-47 (232)
318 TIGR03015 pepcterm_ATPase puta 97.0 0.00051 1.1E-08 56.8 3.3 20 3-22 45-64 (269)
319 PRK11124 artP arginine transpo 97.0 0.0005 1.1E-08 56.1 3.2 20 3-22 30-49 (242)
320 PRK10247 putative ABC transpor 97.0 0.00051 1.1E-08 55.5 3.2 20 3-22 35-54 (225)
321 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.00051 1.1E-08 51.6 3.0 20 3-22 28-47 (144)
322 cd03232 ABC_PDR_domain2 The pl 97.0 0.00052 1.1E-08 54.1 3.2 20 3-22 35-54 (192)
323 TIGR01978 sufC FeS assembly AT 97.0 0.00051 1.1E-08 56.1 3.1 20 3-22 28-47 (243)
324 PF03215 Rad17: Rad17 cell cyc 97.0 0.00066 1.4E-08 61.5 4.1 29 2-30 46-75 (519)
325 cd03297 ABC_ModC_molybdenum_tr 97.0 0.00053 1.2E-08 54.9 3.2 20 3-22 25-44 (214)
326 PRK14250 phosphate ABC transpo 97.0 0.00054 1.2E-08 56.0 3.2 20 3-22 31-50 (241)
327 PRK05342 clpX ATP-dependent pr 97.0 0.00058 1.3E-08 60.2 3.5 30 3-32 110-140 (412)
328 TIGR01184 ntrCD nitrate transp 97.0 0.00055 1.2E-08 55.6 3.2 20 3-22 13-32 (230)
329 PRK14242 phosphate transporter 97.0 0.00055 1.2E-08 56.3 3.2 20 3-22 34-53 (253)
330 cd03214 ABC_Iron-Siderophores_ 97.0 0.00058 1.3E-08 53.2 3.2 20 3-22 27-46 (180)
331 cd03216 ABC_Carb_Monos_I This 97.0 0.0006 1.3E-08 52.3 3.2 20 3-22 28-47 (163)
332 PRK14247 phosphate ABC transpo 97.0 0.00056 1.2E-08 56.2 3.2 20 3-22 31-50 (250)
333 PTZ00454 26S protease regulato 97.0 0.0008 1.7E-08 59.1 4.3 30 2-31 180-210 (398)
334 PF07475 Hpr_kinase_C: HPr Ser 97.0 0.00078 1.7E-08 51.8 3.7 31 4-34 21-51 (171)
335 cd03251 ABCC_MsbA MsbA is an e 97.0 0.00058 1.3E-08 55.4 3.2 20 3-22 30-49 (234)
336 PRK11264 putative amino-acid A 97.0 0.00058 1.3E-08 56.0 3.2 20 3-22 31-50 (250)
337 TIGR01618 phage_P_loop phage n 97.0 0.0006 1.3E-08 55.0 3.1 31 2-33 13-43 (220)
338 TIGR02323 CP_lyasePhnK phospho 97.0 0.00058 1.3E-08 56.1 3.2 20 3-22 31-50 (253)
339 cd03268 ABC_BcrA_bacitracin_re 97.0 0.00061 1.3E-08 54.3 3.2 20 3-22 28-47 (208)
340 cd03237 ABC_RNaseL_inhibitor_d 97.0 0.0006 1.3E-08 56.1 3.2 20 3-22 27-46 (246)
341 cd03215 ABC_Carb_Monos_II This 97.0 0.00061 1.3E-08 53.2 3.1 20 3-22 28-47 (182)
342 PRK10908 cell division protein 97.0 0.00062 1.3E-08 54.9 3.2 20 3-22 30-49 (222)
343 COG1120 FepC ABC-type cobalami 97.0 0.0006 1.3E-08 56.1 3.1 20 3-22 30-49 (258)
344 cd03234 ABCG_White The White s 97.0 0.00061 1.3E-08 55.1 3.2 20 3-22 35-54 (226)
345 CHL00195 ycf46 Ycf46; Provisio 97.0 0.00073 1.6E-08 60.8 3.9 30 3-32 261-291 (489)
346 TIGR01189 ccmA heme ABC export 97.0 0.00064 1.4E-08 53.8 3.2 20 3-22 28-47 (198)
347 PRK10895 lipopolysaccharide AB 97.0 0.00061 1.3E-08 55.6 3.2 20 3-22 31-50 (241)
348 cd03228 ABCC_MRP_Like The MRP 97.0 0.00066 1.4E-08 52.5 3.2 20 3-22 30-49 (171)
349 PRK10744 pstB phosphate transp 97.0 0.0006 1.3E-08 56.4 3.2 20 3-22 41-60 (260)
350 TIGR03771 anch_rpt_ABC anchore 97.0 0.00061 1.3E-08 55.0 3.1 20 3-22 8-27 (223)
351 TIGR00750 lao LAO/AO transport 97.0 0.00066 1.4E-08 57.4 3.5 34 1-34 34-73 (300)
352 TIGR03005 ectoine_ehuA ectoine 97.0 0.0006 1.3E-08 56.0 3.1 20 3-22 28-47 (252)
353 TIGR01242 26Sp45 26S proteasom 97.0 0.00088 1.9E-08 58.2 4.3 29 3-31 158-187 (364)
354 PRK14241 phosphate transporter 97.0 0.00062 1.3E-08 56.2 3.2 20 3-22 32-51 (258)
355 PRK13539 cytochrome c biogenes 97.0 0.00065 1.4E-08 54.2 3.2 20 3-22 30-49 (207)
356 TIGR02770 nickel_nikD nickel i 97.0 0.00061 1.3E-08 55.3 3.1 20 3-22 14-33 (230)
357 PRK11701 phnK phosphonate C-P 97.0 0.00063 1.4E-08 56.2 3.2 20 3-22 34-53 (258)
358 cd03245 ABCC_bacteriocin_expor 97.0 0.00065 1.4E-08 54.6 3.2 20 3-22 32-51 (220)
359 cd03254 ABCC_Glucan_exporter_l 97.0 0.00065 1.4E-08 55.0 3.2 20 3-22 31-50 (229)
360 cd03298 ABC_ThiQ_thiamine_tran 97.0 0.00066 1.4E-08 54.2 3.2 20 3-22 26-45 (211)
361 TIGR00972 3a0107s01c2 phosphat 97.0 0.00065 1.4E-08 55.7 3.2 20 3-22 29-48 (247)
362 PRK14267 phosphate ABC transpo 97.0 0.00064 1.4E-08 55.9 3.2 20 3-22 32-51 (253)
363 TIGR00382 clpX endopeptidase C 97.0 0.0008 1.7E-08 59.2 3.9 30 3-32 118-148 (413)
364 PRK11247 ssuB aliphatic sulfon 97.0 0.00065 1.4E-08 56.2 3.2 20 3-22 40-59 (257)
365 PRK10575 iron-hydroxamate tran 97.0 0.00059 1.3E-08 56.6 3.0 20 3-22 39-58 (265)
366 PHA03134 thymidine kinase; Pro 97.0 0.0094 2E-07 50.8 10.1 23 126-148 164-186 (340)
367 PRK06620 hypothetical protein; 97.0 0.00077 1.7E-08 54.2 3.5 28 3-30 46-74 (214)
368 cd03252 ABCC_Hemolysin The ABC 97.0 0.00067 1.4E-08 55.2 3.2 20 3-22 30-49 (237)
369 cd03233 ABC_PDR_domain1 The pl 97.0 0.00062 1.3E-08 54.2 2.9 20 3-22 35-54 (202)
370 TIGR02324 CP_lyasePhnL phospho 96.9 0.00069 1.5E-08 54.6 3.2 20 3-22 36-55 (224)
371 PRK13543 cytochrome c biogenes 96.9 0.00068 1.5E-08 54.4 3.1 20 3-22 39-58 (214)
372 COG3896 Chloramphenicol 3-O-ph 96.9 0.029 6.3E-07 42.7 11.5 38 2-39 24-64 (205)
373 cd03244 ABCC_MRP_domain2 Domai 96.9 0.0007 1.5E-08 54.4 3.2 20 3-22 32-51 (221)
374 PRK14251 phosphate ABC transpo 96.9 0.00069 1.5E-08 55.6 3.2 20 3-22 32-51 (251)
375 PRK13538 cytochrome c biogenes 96.9 0.0007 1.5E-08 53.9 3.2 20 3-22 29-48 (204)
376 PRK10771 thiQ thiamine transpo 96.9 0.00067 1.5E-08 55.1 3.1 20 3-22 27-46 (232)
377 PRK14269 phosphate ABC transpo 96.9 0.00069 1.5E-08 55.5 3.2 20 3-22 30-49 (246)
378 PRK14274 phosphate ABC transpo 96.9 0.00069 1.5E-08 56.0 3.2 20 3-22 40-59 (259)
379 TIGR00073 hypB hydrogenase acc 96.9 0.0008 1.7E-08 53.7 3.5 22 1-22 22-43 (207)
380 PRK13648 cbiO cobalt transport 96.9 0.00068 1.5E-08 56.4 3.2 20 3-22 37-56 (269)
381 PRK14255 phosphate ABC transpo 96.9 0.00069 1.5E-08 55.7 3.2 20 3-22 33-52 (252)
382 cd03295 ABC_OpuCA_Osmoprotecti 96.9 0.00071 1.5E-08 55.3 3.2 20 3-22 29-48 (242)
383 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.9 0.0007 1.5E-08 54.8 3.1 20 3-22 50-69 (224)
384 PRK14256 phosphate ABC transpo 96.9 0.00071 1.5E-08 55.6 3.2 20 3-22 32-51 (252)
385 PRK14262 phosphate ABC transpo 96.9 0.00071 1.5E-08 55.5 3.2 20 3-22 31-50 (250)
386 PRK04195 replication factor C 96.9 0.00088 1.9E-08 60.4 4.0 30 2-31 40-70 (482)
387 PRK09493 glnQ glutamine ABC tr 96.9 0.00072 1.6E-08 55.2 3.2 20 3-22 29-48 (240)
388 COG0396 sufC Cysteine desulfur 96.9 0.00094 2E-08 53.7 3.7 26 3-28 32-58 (251)
389 TIGR01277 thiQ thiamine ABC tr 96.9 0.00074 1.6E-08 54.1 3.2 20 3-22 26-45 (213)
390 cd03248 ABCC_TAP TAP, the Tran 96.9 0.00074 1.6E-08 54.5 3.2 20 3-22 42-61 (226)
391 PRK15056 manganese/iron transp 96.9 0.00071 1.5E-08 56.4 3.1 20 3-22 35-54 (272)
392 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.9 0.00072 1.6E-08 55.0 3.1 20 3-22 31-50 (238)
393 TIGR01241 FtsH_fam ATP-depende 96.9 0.00085 1.8E-08 60.7 3.8 29 3-31 90-119 (495)
394 PRK14248 phosphate ABC transpo 96.9 0.00074 1.6E-08 56.1 3.2 20 3-22 49-68 (268)
395 PRK11300 livG leucine/isoleuci 96.9 0.00072 1.6E-08 55.6 3.1 20 3-22 33-52 (255)
396 COG3638 ABC-type phosphate/pho 96.9 0.00078 1.7E-08 54.4 3.1 20 3-22 32-51 (258)
397 PRK13638 cbiO cobalt transport 96.9 0.0007 1.5E-08 56.3 3.0 20 3-22 29-48 (271)
398 cd03250 ABCC_MRP_domain1 Domai 96.9 0.00078 1.7E-08 53.5 3.2 20 3-22 33-52 (204)
399 CHL00181 cbbX CbbX; Provisiona 96.9 0.0007 1.5E-08 56.9 3.0 20 3-22 61-80 (287)
400 PRK11831 putative ABC transpor 96.9 0.00074 1.6E-08 56.2 3.1 20 3-22 35-54 (269)
401 PRK09544 znuC high-affinity zi 96.9 0.00077 1.7E-08 55.5 3.2 20 3-22 32-51 (251)
402 cd03253 ABCC_ATM1_transporter 96.9 0.00077 1.7E-08 54.8 3.2 20 3-22 29-48 (236)
403 cd03267 ABC_NatA_like Similar 96.9 0.00078 1.7E-08 54.9 3.2 20 3-22 49-68 (236)
404 PRK14240 phosphate transporter 96.9 0.00079 1.7E-08 55.3 3.2 20 3-22 31-50 (250)
405 PRK13645 cbiO cobalt transport 96.9 0.00076 1.7E-08 56.7 3.2 20 3-22 39-58 (289)
406 CHL00131 ycf16 sulfate ABC tra 96.9 0.00073 1.6E-08 55.5 3.0 20 3-22 35-54 (252)
407 KOG4235 Mitochondrial thymidin 96.9 0.0021 4.5E-08 50.4 5.2 22 126-147 154-175 (244)
408 PRK11614 livF leucine/isoleuci 96.9 0.00074 1.6E-08 55.0 3.0 20 3-22 33-52 (237)
409 COG3172 NadR Predicted ATPase/ 96.9 0.00086 1.9E-08 50.9 3.0 27 1-27 8-35 (187)
410 cd01983 Fer4_NifH The Fer4_Nif 96.9 0.0012 2.7E-08 45.0 3.7 30 3-32 1-34 (99)
411 PRK14261 phosphate ABC transpo 96.9 0.00081 1.8E-08 55.3 3.2 20 3-22 34-53 (253)
412 PRK14239 phosphate transporter 96.9 0.00082 1.8E-08 55.2 3.2 20 3-22 33-52 (252)
413 PRK13632 cbiO cobalt transport 96.9 0.00081 1.8E-08 56.0 3.2 20 3-22 37-56 (271)
414 cd03236 ABC_RNaseL_inhibitor_d 96.9 0.00085 1.8E-08 55.5 3.2 20 3-22 28-47 (255)
415 PRK14235 phosphate transporter 96.9 0.00085 1.8E-08 55.8 3.2 20 3-22 47-66 (267)
416 PRK13548 hmuV hemin importer A 96.9 0.00083 1.8E-08 55.5 3.2 20 3-22 30-49 (258)
417 PRK14245 phosphate ABC transpo 96.9 0.00085 1.8E-08 55.1 3.2 20 3-22 31-50 (250)
418 PRK13649 cbiO cobalt transport 96.9 0.00081 1.8E-08 56.2 3.1 20 3-22 35-54 (280)
419 COG2256 MGS1 ATPase related to 96.9 0.00091 2E-08 57.8 3.4 27 4-30 51-78 (436)
420 PRK14238 phosphate transporter 96.9 0.00085 1.8E-08 55.9 3.2 20 3-22 52-71 (271)
421 cd03369 ABCC_NFT1 Domain 2 of 96.9 0.00089 1.9E-08 53.3 3.2 20 3-22 36-55 (207)
422 PF13191 AAA_16: AAA ATPase do 96.9 0.00076 1.6E-08 52.2 2.8 21 2-22 25-45 (185)
423 PRK14259 phosphate ABC transpo 96.9 0.00085 1.8E-08 55.8 3.2 20 3-22 41-60 (269)
424 cd03290 ABCC_SUR1_N The SUR do 96.9 0.00089 1.9E-08 53.8 3.2 20 3-22 29-48 (218)
425 TIGR02769 nickel_nikE nickel i 96.9 0.00085 1.9E-08 55.6 3.2 20 3-22 39-58 (265)
426 cd03294 ABC_Pro_Gly_Bertaine T 96.9 0.00087 1.9E-08 55.8 3.2 20 3-22 52-71 (269)
427 PRK00080 ruvB Holliday junctio 96.9 0.001 2.2E-08 57.0 3.6 26 3-28 53-79 (328)
428 PRK14237 phosphate transporter 96.9 0.00091 2E-08 55.6 3.2 20 3-22 48-67 (267)
429 PRK14268 phosphate ABC transpo 96.9 0.0009 2E-08 55.3 3.2 20 3-22 40-59 (258)
430 PRK14270 phosphate ABC transpo 96.8 0.00093 2E-08 54.9 3.2 20 3-22 32-51 (251)
431 TIGR00064 ftsY signal recognit 96.8 0.001 2.2E-08 55.5 3.5 34 1-34 72-111 (272)
432 PRK13651 cobalt transporter AT 96.8 0.00089 1.9E-08 56.8 3.2 20 3-22 35-54 (305)
433 cd03231 ABC_CcmA_heme_exporter 96.8 0.00098 2.1E-08 52.9 3.2 20 3-22 28-47 (201)
434 PRK14244 phosphate ABC transpo 96.8 0.00095 2.1E-08 54.8 3.2 20 3-22 33-52 (251)
435 PRK14273 phosphate ABC transpo 96.8 0.00095 2.1E-08 54.9 3.2 20 3-22 35-54 (254)
436 PRK14253 phosphate ABC transpo 96.8 0.00096 2.1E-08 54.7 3.2 20 3-22 31-50 (249)
437 cd03278 ABC_SMC_barmotin Barmo 96.8 0.00093 2E-08 53.0 3.0 20 3-22 24-43 (197)
438 PRK13547 hmuV hemin importer A 96.8 0.00092 2E-08 55.8 3.1 20 3-22 29-48 (272)
439 PRK10418 nikD nickel transport 96.8 0.00095 2E-08 55.0 3.2 20 3-22 31-50 (254)
440 TIGR03411 urea_trans_UrtD urea 96.8 0.00097 2.1E-08 54.4 3.2 20 3-22 30-49 (242)
441 TIGR00635 ruvB Holliday juncti 96.8 0.0013 2.7E-08 55.6 3.9 25 3-27 32-57 (305)
442 cd01124 KaiC KaiC is a circadi 96.8 0.00088 1.9E-08 52.2 2.8 32 3-34 1-38 (187)
443 PRK10619 histidine/lysine/argi 96.8 0.00099 2.1E-08 55.0 3.2 20 3-22 33-52 (257)
444 COG1125 OpuBA ABC-type proline 96.8 0.0024 5.3E-08 52.2 5.3 21 3-23 29-49 (309)
445 PRK09580 sufC cysteine desulfu 96.8 0.00091 2E-08 54.8 2.9 20 3-22 29-48 (248)
446 TIGR03740 galliderm_ABC gallid 96.8 0.001 2.2E-08 53.6 3.2 20 3-22 28-47 (223)
447 TIGR01188 drrA daunorubicin re 96.8 0.00098 2.1E-08 56.4 3.2 20 3-22 21-40 (302)
448 cd03217 ABC_FeS_Assembly ABC-t 96.8 0.001 2.2E-08 52.8 3.1 20 3-22 28-47 (200)
449 COG4525 TauB ABC-type taurine 96.8 0.0011 2.3E-08 52.3 3.0 20 3-22 33-52 (259)
450 COG1118 CysA ABC-type sulfate/ 96.8 0.00099 2.1E-08 55.8 3.0 20 3-22 30-49 (345)
451 PRK13647 cbiO cobalt transport 96.8 0.001 2.2E-08 55.6 3.2 20 3-22 33-52 (274)
452 cd03213 ABCG_EPDR ABCG transpo 96.8 0.001 2.2E-08 52.5 3.1 20 3-22 37-56 (194)
453 PRK09984 phosphonate/organopho 96.8 0.001 2.2E-08 55.1 3.1 20 3-22 32-51 (262)
454 TIGR01288 nodI ATP-binding ABC 96.8 0.001 2.2E-08 56.4 3.2 20 3-22 32-51 (303)
455 PRK14249 phosphate ABC transpo 96.8 0.0011 2.3E-08 54.6 3.2 20 3-22 32-51 (251)
456 PRK03695 vitamin B12-transport 96.8 0.00094 2E-08 54.9 2.9 20 3-22 24-43 (248)
457 PHA02244 ATPase-like protein 96.8 0.0012 2.6E-08 57.0 3.6 30 4-33 122-152 (383)
458 PRK11153 metN DL-methionine tr 96.8 0.001 2.2E-08 57.4 3.2 20 3-22 33-52 (343)
459 PTZ00361 26 proteosome regulat 96.8 0.0015 3.2E-08 58.1 4.3 29 3-31 219-248 (438)
460 PRK13640 cbiO cobalt transport 96.8 0.001 2.3E-08 55.7 3.2 20 3-22 35-54 (282)
461 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0012 2.5E-08 50.3 3.2 20 3-22 27-46 (157)
462 PRK14265 phosphate ABC transpo 96.8 0.0011 2.3E-08 55.4 3.2 20 3-22 48-67 (274)
463 PRK13851 type IV secretion sys 96.8 0.00099 2.2E-08 57.4 3.1 22 2-23 163-184 (344)
464 PRK11144 modC molybdate transp 96.8 0.001 2.2E-08 57.6 3.2 20 3-22 26-45 (352)
465 PRK15112 antimicrobial peptide 96.8 0.0011 2.3E-08 55.2 3.2 20 3-22 41-60 (267)
466 PRK11022 dppD dipeptide transp 96.8 0.001 2.2E-08 57.0 3.1 20 3-22 35-54 (326)
467 PRK14243 phosphate transporter 96.8 0.0011 2.4E-08 55.0 3.2 20 3-22 38-57 (264)
468 PRK10419 nikE nickel transport 96.8 0.0011 2.3E-08 55.2 3.1 20 3-22 40-59 (268)
469 PRK14260 phosphate ABC transpo 96.8 0.0011 2.5E-08 54.7 3.2 20 3-22 35-54 (259)
470 PRK14236 phosphate transporter 96.8 0.0011 2.5E-08 55.2 3.2 20 3-22 53-72 (272)
471 PRK13646 cbiO cobalt transport 96.8 0.0011 2.4E-08 55.6 3.2 20 3-22 35-54 (286)
472 TIGR02237 recomb_radB DNA repa 96.8 0.0018 3.8E-08 51.6 4.2 31 3-33 14-50 (209)
473 TIGR02880 cbbX_cfxQ probable R 96.8 0.001 2.3E-08 55.8 3.0 20 3-22 60-79 (284)
474 TIGR00968 3a0106s01 sulfate AB 96.8 0.0012 2.6E-08 53.8 3.2 20 3-22 28-47 (237)
475 PRK15467 ethanolamine utilizat 96.8 0.0012 2.7E-08 50.3 3.1 22 1-22 1-22 (158)
476 PRK14489 putative bifunctional 96.8 0.0014 3.1E-08 57.0 3.8 22 1-22 205-226 (366)
477 PRK11432 fbpC ferric transport 96.8 0.0012 2.5E-08 57.2 3.2 20 3-22 34-53 (351)
478 COG1222 RPT1 ATP-dependent 26S 96.7 0.0031 6.8E-08 53.9 5.6 35 3-37 187-224 (406)
479 PRK10253 iron-enterobactin tra 96.7 0.0011 2.4E-08 54.9 3.0 20 3-22 35-54 (265)
480 PRK14272 phosphate ABC transpo 96.7 0.0012 2.7E-08 54.2 3.2 20 3-22 32-51 (252)
481 PF03193 DUF258: Protein of un 96.7 0.0013 2.8E-08 50.4 3.0 21 2-22 36-56 (161)
482 PRK11231 fecE iron-dicitrate t 96.7 0.0012 2.6E-08 54.4 3.2 20 3-22 30-49 (255)
483 PRK15093 antimicrobial peptide 96.7 0.0012 2.6E-08 56.6 3.2 20 3-22 35-54 (330)
484 TIGR02982 heterocyst_DevA ABC 96.7 0.0013 2.8E-08 53.0 3.2 20 3-22 33-52 (220)
485 PRK13546 teichoic acids export 96.7 0.0012 2.7E-08 54.8 3.1 20 3-22 52-71 (264)
486 TIGR01425 SRP54_euk signal rec 96.7 0.0015 3.3E-08 57.7 3.8 34 2-35 101-140 (429)
487 PRK11000 maltose/maltodextrin 96.7 0.0012 2.6E-08 57.5 3.2 20 3-22 31-50 (369)
488 PRK11308 dppF dipeptide transp 96.7 0.0012 2.7E-08 56.5 3.2 20 3-22 43-62 (327)
489 PRK14252 phosphate ABC transpo 96.7 0.0013 2.8E-08 54.5 3.2 20 3-22 44-63 (265)
490 PRK13639 cbiO cobalt transport 96.7 0.0013 2.7E-08 55.0 3.2 20 3-22 30-49 (275)
491 PRK13833 conjugal transfer pro 96.7 0.0012 2.6E-08 56.3 3.1 21 3-23 146-166 (323)
492 TIGR02868 CydC thiol reductant 96.7 0.0012 2.5E-08 60.3 3.2 20 3-22 363-382 (529)
493 PRK13650 cbiO cobalt transport 96.7 0.0013 2.8E-08 55.0 3.2 20 3-22 35-54 (279)
494 cd03243 ABC_MutS_homologs The 96.7 0.0013 2.7E-08 52.3 3.0 20 3-22 31-50 (202)
495 PRK14271 phosphate ABC transpo 96.7 0.0013 2.8E-08 54.9 3.2 20 3-22 49-68 (276)
496 COG2274 SunT ABC-type bacterio 96.7 0.0011 2.5E-08 62.2 3.1 21 3-23 501-521 (709)
497 PRK13643 cbiO cobalt transport 96.7 0.0013 2.7E-08 55.4 3.1 20 3-22 34-53 (288)
498 PRK10416 signal recognition pa 96.7 0.0014 3.1E-08 55.8 3.5 33 2-34 115-153 (318)
499 PRK14266 phosphate ABC transpo 96.7 0.0013 2.9E-08 53.9 3.2 20 3-22 31-50 (250)
500 PRK13652 cbiO cobalt transport 96.7 0.0013 2.8E-08 54.9 3.2 20 3-22 32-51 (277)
No 1
>PLN02422 dephospho-CoA kinase
Probab=100.00 E-value=1.7e-43 Score=284.74 Aligned_cols=228 Identities=77% Similarity=1.226 Sum_probs=215.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|++|+|+|++||||||+++.|+++|+.++++|.+.+++.+++++.+..+.+.||.++++++|.++|..++..+|+|+..+
T Consensus 1 M~~igltG~igsGKstv~~~l~~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 1 MRVVGLTGGIASGKSTVSNLFKSSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA 160 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~ 160 (230)
++++.++||.+...+...+......+.+++++|.|+++|..+...||.+|+++||++++.+|+.+|++.+.+++..|++.
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~Ri~~ 160 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQARNRINA 160 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999988766655443344568999999999999888899999999999999999999999999999999999
Q ss_pred cCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCCCchhhhhhchHHHHHHHHHHHHHHHHhhhc
Q 026952 161 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRPLNWTEFWLSRQGALSALVSVVVGVLIFRKV 228 (230)
Q Consensus 161 ~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (230)
+++.+.....||++|+|+++++++.+++.++++.+..|++|.|+--++|++.+-|.|+..|++..||+
T Consensus 161 Q~~~eek~~~AD~VI~N~gs~e~L~~qv~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (232)
T PLN02422 161 QMPLDWKRSKADIVIDNSGSLEDLKQQFQKVLEKIRAPLTWKEFLRSRQGAFSVLASVIAGVLVCRKV 228 (232)
T ss_pred cCChhHHHhhCCEEEECCCCHHHHHHHHHHHHHHHhcchHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 99988888899999999999999999999999999999999999999999999999999999999986
No 2
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=249.32 Aligned_cols=215 Identities=52% Similarity=0.772 Sum_probs=201.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|.+|+++|..||||||+++.|.++|+++|++|.+.|+..++|.+.|..+.+.||.++.-++|.++|..+++.+|++++.+
T Consensus 1 M~iVGLTGgiatGKStVs~~f~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFKALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred CeEEEeecccccChHHHHHHHHHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA 160 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~ 160 (230)
+.++.+.||.+..++.+++.+....|..++++|.|++||..+..++..+|.++||.++..+|+.+|++.+++++++|++.
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~Rl~s 160 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEEDAENRLQS 160 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHHHHHHHHh
Confidence 99999999999999999999998999999999999999998888899999999999999999999999999999999999
Q ss_pred cCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCCCchhhhhhchHHHHHHHHHHH
Q 026952 161 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRPLNWTEFWLSRQGALSALVSVV 219 (230)
Q Consensus 161 ~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (230)
+++.+...+.||++|+|+++++++.+++.++...+... .+++..+..+.++.+++
T Consensus 161 Qmp~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~~~~~s----~~~~~~~~~~~~~~~~~ 215 (225)
T KOG3220|consen 161 QMPLEKKCELADVVIDNNGSLEDLYEQVEKVLALLQKS----IPKLLTRLSFLLLFLVV 215 (225)
T ss_pred cCCHHHHHHhhheeecCCCChHHHHHHHHHHHHHhcch----hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888 44444445555554443
No 3
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=100.00 E-value=3.7e-37 Score=250.23 Aligned_cols=222 Identities=32% Similarity=0.451 Sum_probs=194.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh-CCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|++|||+|+.||||||+++.|.+ +|++++++|.+.+++.+++.+.+..+.+.||..++.++|.++|..++..+|++++.
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 89999999999999999999995 79999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH---------HhcCCcEEEEEeeeeccccc-cccCCeEEEEEcCHHHHHHHHHhhCCC
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKL---------WIKGCKVIVLDVPLLFEAKM-DKWTKPIVVVWVDPDTQLQRLMARDRT 149 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~---------~~~~~~~viie~~~~~e~~~-~~~~d~vi~l~~~~~~~~~Rl~~R~~~ 149 (230)
+++++.++||.+...+.+.+... ...+..++++|.|+++|..+ ...||.+|++++|.+++.+|+.+|++.
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g~ 160 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRNGF 160 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcCCC
Confidence 99999999999998876665421 01234589999999999874 457899999999999999999999999
Q ss_pred CHHHHHHHHHhcCCcccccccCCEEEeCC--CCHHHHHHHHHHHHHHhhCC---Cchhh-hhhchHHHHHHHHHHHHHH
Q 026952 150 SEEDARNRINAQMPLDIKRNNADIVINNT--GTLDDLNEQVRKVLFEIKRP---LNWTE-FWLSRQGALSALVSVVVGV 222 (230)
Q Consensus 150 ~~~~~~~r~~~~~~~~~~~~~ad~iI~n~--~~~~~v~~~i~~~l~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~ 222 (230)
+.+++..|++.+++.......||++|+|+ ++++++.+++.++++.+.+. .+||- .++||-+.++|+..+-+|.
T Consensus 161 s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (244)
T PTZ00451 161 SKEEALQRIGSQMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAWMSRQSNKRLTYIFGTVAAAAVGVAAAVGYVGY 239 (244)
T ss_pred CHHHHHHHHHhCCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHHHHhhCChHHHHHHHHCChHHHHHHHHHHHHhh
Confidence 99999999999999888889999999999 99999999999988776633 33443 3477888888887766654
No 4
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=100.00 E-value=5.1e-36 Score=238.48 Aligned_cols=199 Identities=39% Similarity=0.605 Sum_probs=185.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|++|+|+|++||||||+++.|+.+|++++++|.+.+++.+++.+.+..+.+.||..++.++|.++|..++..+|++++.+
T Consensus 1 m~~igitG~igsGKst~~~~l~~~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 1 MLRIGLTGGIGSGKSTVADLLSSEGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA 160 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~ 160 (230)
++++.++||.+...+.+.+......+..+++++.+++++..+...+|.+||++||++++.+|+.+|+|.+.+++..|++.
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~ri~~ 160 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKRGLDEDDARRRIAA 160 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999999988877665544445578999999999998888899999999999999999999999999999999999
Q ss_pred cCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCCC
Q 026952 161 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRPL 199 (230)
Q Consensus 161 ~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~~ 199 (230)
+++.+.....||++|+|+++++++.+++.++++.++.+.
T Consensus 161 Q~~~~~k~~~ad~vI~N~g~~e~l~~~v~~~~~~~~~~~ 199 (200)
T PRK14734 161 QIPDDVRLKAADIVVDNNGTREQLLAQVDGLIAEILSRV 199 (200)
T ss_pred cCCHHHHHHhCCEEEECcCCHHHHHHHHHHHHHHHHhcc
Confidence 999888888999999999999999999999998877653
No 5
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=100.00 E-value=1.2e-35 Score=235.58 Aligned_cols=192 Identities=47% Similarity=0.720 Sum_probs=177.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|++|+|+|++||||||+++.|+++|+.++++|.+.+++..++++.+..+.+.||.+++.++|.++|..++..+|++++.+
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 67899999999999999999999999999999999999998999999999999999998889999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA 160 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~ 160 (230)
++++.++||.+...+.+.+... ...+++++|+|++++..+...||.+|+++||++++.+|+.+|++.+.+++..|++.
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~--~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~ri~~ 159 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEA--ESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEEAEAIIAS 159 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--ccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999887766533 12368999999999999888899999999999999999999999999999999999
Q ss_pred cCCcccccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 161 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 161 ~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
+++..+....+|++|+|+++++++.+++.++++.
T Consensus 160 Q~~~~~~~~~ad~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 160 QMPREEKLARADDVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred hCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9888877888999999999999999999998764
No 6
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=100.00 E-value=2.7e-36 Score=235.38 Aligned_cols=180 Identities=44% Similarity=0.714 Sum_probs=160.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
++|+|+|+.||||||+++.|+++|++++++|.+.+++.+++.+.+..+.+.||.++++++|.++|..++..+|++++.++
T Consensus 1 ~iIglTG~igsGKStv~~~l~~~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~~ 80 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAELGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKLK 80 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHHCCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhc
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQ 161 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~ 161 (230)
.++.++||.+...+.+++.... ...++++|.|+++|..+...||.+|+++||.+++.+|+++|++.+.+++..|++.|
T Consensus 81 ~L~~iihP~I~~~~~~~~~~~~--~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri~~Q 158 (180)
T PF01121_consen 81 KLENIIHPLIREEIEKFIKRNK--SEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARIASQ 158 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH--STSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHHHTS
T ss_pred HHHHHHhHHHHHHHHHHHHhcc--CCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHHHhC
Confidence 9999999999998887776542 23789999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCEEEeCCCCHHH
Q 026952 162 MPLDIKRNNADIVINNTGTLDD 183 (230)
Q Consensus 162 ~~~~~~~~~ad~iI~n~~~~~~ 183 (230)
++.++....||++|+|++++++
T Consensus 159 ~~~~~k~~~ad~vI~N~g~~~~ 180 (180)
T PF01121_consen 159 MPDEEKRKRADFVIDNNGSLEE 180 (180)
T ss_dssp --HHHHHHH-SEEEE-SSHHH-
T ss_pred CCHHHHHHhCCEEEECCCCCCC
Confidence 9999999999999999998764
No 7
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=100.00 E-value=2e-35 Score=234.23 Aligned_cols=191 Identities=44% Similarity=0.717 Sum_probs=177.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhC-CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCC-ccCHHHHHhhhcCChH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKAN-DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNG-EVDRSKLGQIVFSDSS 78 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~-g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 78 (230)
|++|+|+|++||||||+++.|++. |++++++|.+.+++.+++.+.+..+.+.||..++.++| .+++..++..+|+++.
T Consensus 1 ~~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~ 80 (195)
T PRK14730 1 QRRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPE 80 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHH
Confidence 679999999999999999999965 99999999999999999999999999999999999899 8999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHH
Q 026952 79 KRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRI 158 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~ 158 (230)
.+++++.++||.+...+.+.+... ...+++++|.|++++..+...||.+|+++||.+++.+|+.+|++.+.+++..|+
T Consensus 81 ~~~~l~~i~hP~i~~~~~~~~~~~--~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~ri 158 (195)
T PRK14730 81 ERRWLENLIHPYVRERFEEELAQL--KSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEARI 158 (195)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhc--CCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999998887666532 234689999999999999889999999999999999999999999999999999
Q ss_pred HhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHH
Q 026952 159 NAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLF 193 (230)
Q Consensus 159 ~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~ 193 (230)
+.+++.++....+|++|+|+++++++.+++.++++
T Consensus 159 ~~Q~~~~~k~~~aD~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 159 NAQWPLEEKVKLADVVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred HhCCCHHHHHhhCCEEEECCCCHHHHHHHHHHHHh
Confidence 99998888888999999999999999999998864
No 8
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=100.00 E-value=5.5e-35 Score=231.50 Aligned_cols=192 Identities=29% Similarity=0.450 Sum_probs=177.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQL 82 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (230)
+|+|+|++||||||+++.|++.|+.++++|.+.+++.+++...+..+.+.||.+++.++|.++|..++..+|++++.+++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~ 80 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA 80 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhcC
Q 026952 83 LNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQM 162 (230)
Q Consensus 83 l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~ 162 (230)
++.++||.+...+...+... ...+++++|.|+++|..+...||.+||+++|++++.+|+.+|++.+.+++..|++.++
T Consensus 81 L~~i~hP~v~~~~~~~~~~~--~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~Q~ 158 (196)
T PRK14732 81 LNELIHPLVRKDFQKILQTT--AEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIASQL 158 (196)
T ss_pred HHHHhhHHHHHHHHHHHHHH--hcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcC
Confidence 99999999998876665432 2236789999999999988899999999999999999999999999999999999999
Q ss_pred CcccccccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 163 PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 163 ~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
+..+....||++|+|+++++++.+++.++++.+.
T Consensus 159 ~~~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~ 192 (196)
T PRK14732 159 PITEKLKRADYIVRNDGNREGLKEECKILYSTLL 192 (196)
T ss_pred CHHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999887654
No 9
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=100.00 E-value=7.8e-35 Score=230.82 Aligned_cols=193 Identities=32% Similarity=0.480 Sum_probs=175.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|.+|+|+|++||||||+++.|+ ++|+.++++|.+.+++.++ +..+..+.+.||.++++ +|.++|..++..+|++++.
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESKEA 83 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCHHH
Confidence 4589999999999999999999 5899999999999999876 56899999999999986 7889999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccc--cccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHH
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKM--DKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNR 157 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~--~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r 157 (230)
+++++.++||.+...+.+.+.. .+..++++|.|+++|..+ ...+|.+|+++||++++++|+++|++.+.+++..|
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~~~---~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~r 160 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQVKE---SDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAVAF 160 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh---cCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999999999888666643 234689999999999865 45789999999999999999999999999999999
Q ss_pred HHhcCCcccccccCCEEEeCCC-CHHHHHHHHHHHHHHhhCC
Q 026952 158 INAQMPLDIKRNNADIVINNTG-TLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 158 ~~~~~~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~~~~~ 198 (230)
++.|++.++....||++|+|++ +++++.+++..++..+++-
T Consensus 161 i~~Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~~~~ 202 (204)
T PRK14733 161 INLQISDKEREKIADFVIDNTELTDQELESKLITTINEITNL 202 (204)
T ss_pred HHhCCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999 9999999999999887553
No 10
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=100.00 E-value=4.5e-34 Score=225.78 Aligned_cols=195 Identities=41% Similarity=0.629 Sum_probs=178.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|++|+|+|.+||||||+|+.|++.|++++++|.+.|++.+++++.+..+.+.||.++.+++|.+++..+++.+|+++..+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~ 81 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAELGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEAR 81 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHcCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHHH
Confidence 78999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA 160 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~ 160 (230)
.+++.+.||.+...+. .......++ ++++|.|++++......+|.+|+++||++++.+|+++|++.+.+++..++..
T Consensus 82 ~~Le~i~hPli~~~~~-~~~~~~~~~--~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~~~~ 158 (201)
T COG0237 82 LKLEKILHPLIRAEIK-VVIDGARSP--YVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEARLAS 158 (201)
T ss_pred HHHHHhhhHHHHHHHH-HHHHHhhCC--ceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 9999999999998775 332222222 8899999999987766799999999999999999999999999999999999
Q ss_pred cCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCC
Q 026952 161 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 161 ~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~ 198 (230)
+.+.++....+|++++|+++++++.+++.+.++.+...
T Consensus 159 Q~~~~ek~~~ad~vi~n~~~i~~l~~~i~~~~~~~~~~ 196 (201)
T COG0237 159 QRDLEEKLALADVVIDNDGSIENLLEQIEKLLKELLGL 196 (201)
T ss_pred cCCHHHHHhhcCChhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 99988889999999999999999999999999876654
No 11
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=100.00 E-value=7.6e-33 Score=221.75 Aligned_cols=195 Identities=33% Similarity=0.478 Sum_probs=176.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCC--Cc--cCHHHHHhhhcCCh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPN--GE--VDRSKLGQIVFSDS 77 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~--~~~~~l~~~~~~~~ 77 (230)
++|+|+|++||||||+++.|...|++++++|.+.+++..++...+..+...||.+++..+ |. ++|..++..+|+++
T Consensus 6 ~~igitG~igsGKSt~~~~l~~~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf~~~ 85 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAEMGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVFSDP 85 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHhCCH
Confidence 579999999999999999999999999999999999998888888999999999998543 43 89999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHH
Q 026952 78 SKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNR 157 (230)
Q Consensus 78 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r 157 (230)
..+++++.++||.+...+.+.+......+..++++|++.+++..+...||.++++.||++++.+|+.+|++.+.+++.+|
T Consensus 86 ~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~s~e~~~~R 165 (208)
T PRK14731 86 EKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMGSREEIRRR 165 (208)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999988877776655556678999999999998888899999999999999999999988899999999
Q ss_pred HHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 158 INAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 158 ~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
++.+++.......+|++|+|+++++++.++++++++.+.
T Consensus 166 i~~q~~~~~~~~~ad~vI~N~g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 166 IAAQWPQEKLIERADYVIYNNGTLDELKAQTEQLYQVLL 204 (208)
T ss_pred HHHcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 999888777777899999999999999999999987654
No 12
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=100.00 E-value=4e-32 Score=212.87 Aligned_cols=178 Identities=49% Similarity=0.788 Sum_probs=164.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQL 82 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (230)
+|+|+|++||||||+++.|+++|+.++++|.+.+++.+++...+..+.+.||..++..+|.+++..++..+|++++.+++
T Consensus 1 ii~itG~~gsGKst~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~ 80 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKELGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRKK 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHHH
Confidence 58999999999999999999999999999999999999989999999999999998888999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhcC
Q 026952 83 LNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQM 162 (230)
Q Consensus 83 l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~ 162 (230)
++.++||.+...+.+.+... ....++++|+|++++..+...+|.+|+++||++++.+|+.+|++.+.+++..|++.++
T Consensus 81 l~~i~hp~i~~~~~~~~~~~--~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~~~~~r~~~Q~ 158 (179)
T cd02022 81 LEAITHPLIRKEIEEQLAEA--RKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSEEEAEARIASQM 158 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHc--cCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 99999999998887766543 2236899999999999888889999999999999999999999999999999999999
Q ss_pred CcccccccCCEEEeCCCCHH
Q 026952 163 PLDIKRNNADIVINNTGTLD 182 (230)
Q Consensus 163 ~~~~~~~~ad~iI~n~~~~~ 182 (230)
+..+....||++|+|+++++
T Consensus 159 ~~~~~~~~aD~vI~N~~~~~ 178 (179)
T cd02022 159 PLEEKRARADFVIDNSGSLE 178 (179)
T ss_pred CHHHHHHhCCEEEECcCCCC
Confidence 88888889999999998764
No 13
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=100.00 E-value=8.4e-32 Score=212.68 Aligned_cols=186 Identities=43% Similarity=0.664 Sum_probs=170.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCC-CcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFKAND-VPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~~g-~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
+|+|+|++||||||+++.|++.| ++++++|.+.+++.+++.+.+..+.+.||.+++..+|.++|..++..+|++++.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 58999999999999999999765 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhc
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQ 161 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~ 161 (230)
.++.++||.+...+.+.+.... ..+.+++++.+.+++..+...+|.++++++|.+++.+|+.+|++.+.+++..|++.+
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~-~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~~~q 159 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQ-SKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRLASQ 159 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhh-cCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 9999999999998877776543 223578999999988877788999999999999999999999999999999999999
Q ss_pred CCcccccccCCEEEeCCCCHHHHHHHHH
Q 026952 162 MPLDIKRNNADIVINNTGTLDDLNEQVR 189 (230)
Q Consensus 162 ~~~~~~~~~ad~iI~n~~~~~~v~~~i~ 189 (230)
++..+....||++|+|+++++++.+++.
T Consensus 160 ~~~~~~~~~ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 160 MDIEERLARADDVIDNSATLADLVKQLE 187 (188)
T ss_pred CCHHHHHHhCCEEEECCCCHHHHHHHHh
Confidence 8877778889999999999999998875
No 14
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=100.00 E-value=3.9e-31 Score=229.93 Aligned_cols=196 Identities=39% Similarity=0.578 Sum_probs=177.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|++|+|+|++||||||+++.|+++|++++++|.+.+++.+++...+..+.+.||..+++++|.++|..+++.+|.+++.+
T Consensus 1 m~~IgltG~igsGKStv~~~L~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAELGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHCCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 88999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA 160 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~ 160 (230)
+.++.++||.+...+.+.+... .+..+++.+.+++++..+...+|.+||+++|.+++.+|+.+|++.+.+++..++..
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~--~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~ri~~ 158 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAA--PEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQRGMAEADARARIAA 158 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 9999999999998776555432 34457777899999998888899999999999999999999889999999999999
Q ss_pred cCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCC
Q 026952 161 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 161 ~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~ 198 (230)
++..++....||++|+|+++++++.+++.++++..+.+
T Consensus 159 Q~~~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~~~~~ 196 (395)
T PRK03333 159 QASDEQRRAVADVWLDNSGTPDELVEAVRALWADRLLP 196 (395)
T ss_pred cCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence 98888888899999999999999999999888764443
No 15
>PRK01184 hypothetical protein; Provisional
Probab=99.85 E-value=1.1e-19 Score=142.94 Aligned_cols=170 Identities=26% Similarity=0.330 Sum_probs=109.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhc-CCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLK-KGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|++|+|+|+|||||||+++.+.++|+++++++++.++... .+.+.. ...+.....
T Consensus 1 ~~~i~l~G~~GsGKsT~a~~~~~~g~~~i~~~d~lr~~~~~~~~~~~-------------------~~~~g~~~~----- 56 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSKIAREMGIPVVVMGDVIREEVKKRGLEPT-------------------DENIGKVAI----- 56 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHcCCcEEEhhHHHHHHHHHcCCCCC-------------------cHHHHHHHH-----
Confidence 8999999999999999999666899999999887776532 111100 001111110
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eeccc-cccccC---CeEEEEEcCHHHHHHHHHhhCC----CC
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLFEA-KMDKWT---KPIVVVWVDPDTQLQRLMARDR----TS 150 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~e~-~~~~~~---d~vi~l~~~~~~~~~Rl~~R~~----~~ 150 (230)
.....+....+...+...+. ..+...+++|+. ...+. .+.+.+ ..+|+++||++++.+|+..|++ .+
T Consensus 57 -~~~~~~~~~~~~~~~~~~i~---~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~ 132 (184)
T PRK01184 57 -DLRKELGMDAVAKRTVPKIR---EKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKS 132 (184)
T ss_pred -HHHHHHChHHHHHHHHHHHH---hcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhh
Confidence 00000000111111111111 134567889975 33332 122223 3789999999999999999863 45
Q ss_pred HHHHHHHHHhc--CCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCC
Q 026952 151 EEDARNRINAQ--MPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 151 ~~~~~~r~~~~--~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~ 198 (230)
.+++..|.+.+ ++..+....||++|+|+++++++.+++.++++.+..-
T Consensus 133 ~~~~~~r~~~q~~~~~~~~~~~ad~vI~N~~~~~~l~~~v~~~~~~~~~~ 182 (184)
T PRK01184 133 WEELEERDERELSWGIGEVIALADYMIVNDSTLEEFRARVRKLLERILRS 182 (184)
T ss_pred HHHHHHHHHHHhccCHHHHHHhcCEEEeCCCCHHHHHHHHHHHHHHHhcc
Confidence 77888888766 3456667889999999999999999999998876544
No 16
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.83 E-value=2e-19 Score=134.44 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=108.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|.|+|+|||||||+|+.|+ ++|+++++++.++|+++..-+....+..+ +-
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~--------------------~A------- 53 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSR--------------------YA------- 53 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHH--------------------HH-------
Confidence 579999999999999999999 79999999999999876543332222211 10
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHH-
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRIN- 159 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~- 159 (230)
-.+|.+...+......... .+.+|+|+.+..-.. +...|+.|||.+|.+++.+|+.+|.|.+.+++.....
T Consensus 54 -----E~~p~iD~~iD~rq~e~a~--~~nvVlegrLA~Wi~-k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~ 125 (179)
T COG1102 54 -----EEDPEIDKEIDRRQKELAK--EGNVVLEGRLAGWIV-REYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVE 125 (179)
T ss_pred -----hcCchhhHHHHHHHHHHHH--cCCeEEhhhhHHHHh-ccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 0123333333333332222 334788876543211 1346999999999999999999999988766654432
Q ss_pred ----------hcCC-cccccccCCEEEeCCC-CHHHHHHHHHHHHHHhhCC
Q 026952 160 ----------AQMP-LDIKRNNADIVINNTG-TLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 160 ----------~~~~-~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~~~~~ 198 (230)
+... ...-.+-+|++||++. +++.+..-+...+......
T Consensus 126 RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~ 176 (179)
T COG1102 126 REESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSIK 176 (179)
T ss_pred HHHHHHHHHHHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhccc
Confidence 1111 1223566789999988 8888888888877765544
No 17
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.81 E-value=6.2e-18 Score=136.05 Aligned_cols=187 Identities=12% Similarity=0.166 Sum_probs=131.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhh---------cCCchHHHHHHHHhCCcccCCCCc----cCHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVL---------KKGTGGWKKVVAAFGEDILLPNGE----VDRS 67 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~----~~~~ 67 (230)
++|+|+|++||||||+++.|+ ++|+.+++++.+++... ..+......+.+.++..+...++. ++..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNGE 82 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcCc
Confidence 789999999999999999999 79999999999987652 122333445556666655433433 6778
Q ss_pred HHHhhhcCChHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhC
Q 026952 68 KLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARD 147 (230)
Q Consensus 68 ~l~~~~~~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~ 147 (230)
.+...++++...........+|.+...+.....+.... ++ +|++|+.....-+ ...++.+|+++|++++.+|+.+|.
T Consensus 83 ~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~-~~-~Vi~Gr~~~~~v~-~~a~~~ifl~a~~~~Ra~Rr~~~~ 159 (217)
T TIGR00017 83 DVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKN-DG-IIADGRDIGTVVF-PNAEVKIFLDASVEERAKRRYKQL 159 (217)
T ss_pred chHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-CC-EEEEEcCcceEEe-CCCCEEEEEECCHHHHHHHHHHHH
Confidence 88888888777777777778999999888777765433 33 6888875333322 226789999999999999998875
Q ss_pred -----CCCHHHHHHHHHhc----CC--cccccccCC-EEEeCCC-CHHHHHHHHHHH
Q 026952 148 -----RTSEEDARNRINAQ----MP--LDIKRNNAD-IVINNTG-TLDDLNEQVRKV 191 (230)
Q Consensus 148 -----~~~~~~~~~r~~~~----~~--~~~~~~~ad-~iI~n~~-~~~~v~~~i~~~ 191 (230)
..+.+++.+.+... .. ..+.....| ++||++. +++++.+.|.+.
T Consensus 160 ~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~l~ieevv~~I~~~ 216 (217)
T TIGR00017 160 QIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSNLSIDEVVEKILEY 216 (217)
T ss_pred hccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCCCCHHHHHHHHHHh
Confidence 24556666655422 21 222222233 5688887 888888887653
No 18
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.79 E-value=6.4e-19 Score=141.33 Aligned_cols=181 Identities=22% Similarity=0.253 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hC---CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCCh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AN---DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS 77 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~---g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (230)
.+|+|+|++||||||+++.|. .+ .+.+++.|.+++..... +.. +.. ...+.....++...+.+.+
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~----~~~-~~~~~~~~~~~~~~l~~~l---- 75 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHL--SFE----ERV-KTNYDHPDAFDHDLLIEHL---- 75 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccC--CHH----Hhc-ccCccCcccccHHHHHHHH----
Confidence 489999999999999999999 44 35678999886532111 000 010 0011112223333332221
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH-HHhcCCcEEEEEeeeecc-ccccccCCeEEEEEcCHHHHHHHHHhhC----CCCH
Q 026952 78 SKRQLLNGLLAPYISLGIFMEVLK-LWIKGCKVIVLDVPLLFE-AKMDKWTKPIVVVWVDPDTQLQRLMARD----RTSE 151 (230)
Q Consensus 78 ~~~~~l~~~~~p~v~~~~~~~~~~-~~~~~~~~viie~~~~~e-~~~~~~~d~vi~l~~~~~~~~~Rl~~R~----~~~~ 151 (230)
..+.....+..|.+.......... ....+.+++++|++.++. ..+...+|.+||+++|.+++++|+.+|+ |.+.
T Consensus 76 ~~l~~~~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~ 155 (209)
T PRK05480 76 KALKAGKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSL 155 (209)
T ss_pred HHHHcCCccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCH
Confidence 000000111122221110000000 001245689999998876 5677789999999999999999999987 7889
Q ss_pred HHHHHHHHhcCC------cccccccCCEEEeCCC----CHHHHHHHHHHHHH
Q 026952 152 EDARNRINAQMP------LDIKRNNADIVINNTG----TLDDLNEQVRKVLF 193 (230)
Q Consensus 152 ~~~~~r~~~~~~------~~~~~~~ad~iI~n~~----~~~~v~~~i~~~l~ 193 (230)
+++..++..+.. .++....||++|+|++ +++.+.++|.+++.
T Consensus 156 e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~~~ 207 (209)
T PRK05480 156 ESVINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQLLE 207 (209)
T ss_pred HHHHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHHhh
Confidence 988888877653 4667788999998665 78888888887654
No 19
>PRK08356 hypothetical protein; Provisional
Probab=99.79 E-value=3.1e-18 Score=135.92 Aligned_cols=177 Identities=21% Similarity=0.246 Sum_probs=102.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHH-HhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVA-AFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
+++|+|+|+|||||||+|+.|.++|++++++++..++..+.....|....+ .+.. ....+..++...+....+++
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~e~g~~~~~~yG~--- 80 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEEKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKG-EPTRENLIELGRYLKEKYGE--- 80 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHCCCcEEeCCCcccccccccccccccccHHHHhh-ccccccHHHHHHHHHHhcCc---
Confidence 368999999999999999999988999999987655433222211111000 0000 00001111111111111111
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeec-ccc-ccccCCeEEEEEcCHHHHHHHHHhhCCC------CH
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLF-EAK-MDKWTKPIVVVWVDPDTQLQRLMARDRT------SE 151 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~-e~~-~~~~~d~vi~l~~~~~~~~~Rl~~R~~~------~~ 151 (230)
+.+.....+.+ .... .+++||..-. +.. +......+||+++|++++.+|+.+|+.. +.
T Consensus 81 ---------~~~~~~~~~~~----~~~~-~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~ 146 (195)
T PRK08356 81 ---------DILIRLAVDKK----RNCK-NIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSF 146 (195)
T ss_pred ---------HHHHHHHHHHh----ccCC-eEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccH
Confidence 11111111111 1122 4677765221 211 2222467899999999999999998753 55
Q ss_pred HHHHHHHHhcCC---cccccccCCEEEeCCCCHHHHHHHHHHHHHHh
Q 026952 152 EDARNRINAQMP---LDIKRNNADIVINNTGTLDDLNEQVRKVLFEI 195 (230)
Q Consensus 152 ~~~~~r~~~~~~---~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~ 195 (230)
+++..+.+.+.. .......||++|+|+++++++.++|.+++..+
T Consensus 147 e~~~~~~~~~~~l~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 147 EDFLKFDEWEEKLYHTTKLKDKADFVIVNEGTLEELRKKVEEILREL 193 (195)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 666555544332 33445679999999899999999999998765
No 20
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.77 E-value=9.3e-17 Score=126.00 Aligned_cols=189 Identities=12% Similarity=0.154 Sum_probs=114.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhc---------CCchHHHHHHHHhCCcccCCCCc-cCHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLK---------KGTGGWKKVVAAFGEDILLPNGE-VDRSKLG 70 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~ 70 (230)
++|+|.||+||||||+|+.|+ ++|+.+++++.++|...- .+.+....+...+...+...... ++-+...
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedvs 84 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDVS 84 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchhh
Confidence 689999999999999999999 799999999999986531 11122233333322221110000 0000111
Q ss_pred hhhcCChHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhC--
Q 026952 71 QIVFSDSSKRQLLNGL-LAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARD-- 147 (230)
Q Consensus 71 ~~~~~~~~~~~~l~~~-~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~-- 147 (230)
..+- +.+--...+.+ .+|.+...+.+........+ +-+|+||+-+...-+ ...++.|||+++++++.+|+-+..
T Consensus 85 ~~ir-~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~-~~~V~dGRDiGTvV~-PdA~lKiFLtAS~e~RA~RR~~q~~~ 161 (222)
T COG0283 85 EEIR-TEEVGNAASKVAAIPEVREALVKLQRAFAKNG-PGIVADGRDIGTVVF-PDAELKIFLTASPEERAERRYKQLQA 161 (222)
T ss_pred hhhh-hHHHHHHHHHHHccHHHHHHHHHHHHHHHhcC-CCEEEecCCCcceEC-CCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 1110 01111122222 56777777766655554333 447999886655433 235789999999999988876543
Q ss_pred -CCC--HHHH----HHHHHhcC--CcccccccCC-EEEeCCC-CHHHHHHHHHHHHH
Q 026952 148 -RTS--EEDA----RNRINAQM--PLDIKRNNAD-IVINNTG-TLDDLNEQVRKVLF 193 (230)
Q Consensus 148 -~~~--~~~~----~~r~~~~~--~~~~~~~~ad-~iI~n~~-~~~~v~~~i~~~l~ 193 (230)
|.+ .+++ ..|..... ...|.+...| ++||++. +++++.++|.++++
T Consensus 162 ~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~ 218 (222)
T COG0283 162 KGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR 218 (222)
T ss_pred ccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence 222 3443 44443333 3556666677 4689887 99999999999887
No 21
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.75 E-value=1.3e-17 Score=131.94 Aligned_cols=167 Identities=20% Similarity=0.223 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCC---CcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCCh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AND---VPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS 77 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g---~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (230)
.+|+|+|+|||||||+|+.|. .++ ..+|+.|++++...... .+..+..-+++..+++.+.+.+.+
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~-------~~~~~~~n~d~p~A~D~dLl~~~L---- 77 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLP-------FEERNKINYDHPEAFDLDLLIEHL---- 77 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcC-------HhhcCCcCccChhhhcHHHHHHHH----
Confidence 589999999999999999999 555 45899999987543221 111222223344455555554432
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH-HHhcCCcEEEEEeeeec-cccccccCCeEEEEEcCHHHHHHHHHhhC----CCCH
Q 026952 78 SKRQLLNGLLAPYISLGIFMEVLK-LWIKGCKVIVLDVPLLF-EAKMDKWTKPIVVVWVDPDTQLQRLMARD----RTSE 151 (230)
Q Consensus 78 ~~~~~l~~~~~p~v~~~~~~~~~~-~~~~~~~~viie~~~~~-e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~----~~~~ 151 (230)
..+.....+..|.+......+... ....+.++||+||...+ ++.++..+|+.||+++|.++|..|...|+ |.+.
T Consensus 78 ~~L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~ 157 (218)
T COG0572 78 KDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDL 157 (218)
T ss_pred HHHHcCCcccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCH
Confidence 222222334455554332222211 11235679999987665 55788889999999999999999988876 6788
Q ss_pred HHHHHHHHhc-CC-----cccccccCCEEEeCCC
Q 026952 152 EDARNRINAQ-MP-----LDIKRNNADIVINNTG 179 (230)
Q Consensus 152 ~~~~~r~~~~-~~-----~~~~~~~ad~iI~n~~ 179 (230)
++....+... .+ .++.++.||++|...+
T Consensus 158 e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~~ 191 (218)
T COG0572 158 ESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSGG 191 (218)
T ss_pred HHHHHHHHHhhChhhhhccCcccccceEEeecCC
Confidence 8877777632 22 5677899999986543
No 22
>PRK06696 uridine kinase; Validated
Probab=99.74 E-value=3e-18 Score=138.83 Aligned_cols=169 Identities=17% Similarity=0.151 Sum_probs=102.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hC---CCcE--EehhhhhHHhhcCCchHHHHHHHHhCCcccC--CCCccCHHHHHhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-AN---DVPV--VDADIIARDVLKKGTGGWKKVVAAFGEDILL--PNGEVDRSKLGQI 72 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~---g~~~--i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~l~~~ 72 (230)
+.+|+|+|++||||||+|+.|+ .+ |..+ +++|+++.... .....+..-.. .++.+++..|...
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~---------~r~~~~~~~~~g~~~~~~d~~~L~~~ 92 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRV---------IRYRRGRESAEGYYEDAYDYTALRRL 92 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHH---------HHHHcCCCChhhcCccccCHHHHHHH
Confidence 3689999999999999999999 33 6554 55899975321 11111111000 0246788888877
Q ss_pred hcC--ChHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhC---
Q 026952 73 VFS--DSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARD--- 147 (230)
Q Consensus 73 ~~~--~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~--- 147 (230)
++. .+.....++...++...+....... ....+..++|+|++.+++..+...+|.+||+++|.+++.+|+..|+
T Consensus 93 l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~ 171 (223)
T PRK06696 93 LLDPLGPNGDRQYRTASHDLKTDIPVHNPP-LLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEA 171 (223)
T ss_pred HHhhccCCCceeEeeeeeccccCcccCCCc-eecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhh
Confidence 764 2211112222233333221110000 0113456899999998888777889999999999999999999987
Q ss_pred -CCCHHHHHHHHHhc--------CCcccccccCCEEEeCCCC
Q 026952 148 -RTSEEDARNRINAQ--------MPLDIKRNNADIVINNTGT 180 (230)
Q Consensus 148 -~~~~~~~~~r~~~~--------~~~~~~~~~ad~iI~n~~~ 180 (230)
|.. +++...+... .........||++|+|+.+
T Consensus 172 ~g~~-~~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~~ 212 (223)
T PRK06696 172 FGSY-EEAEKMYLARYHPAQKLYIAEANPKERADVVIDNSDP 212 (223)
T ss_pred hCCc-hHHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCCC
Confidence 432 2222222221 1222336779999999863
No 23
>PTZ00301 uridine kinase; Provisional
Probab=99.73 E-value=1.3e-17 Score=133.38 Aligned_cols=185 Identities=17% Similarity=0.140 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-h----CC---CcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-A----ND---VPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIV 73 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~----~g---~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 73 (230)
++|+|+|+|||||||+|+.|. + .| ..+++.|.+++...... . ...+..-++....++...+.+.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~-----~--~~~~~~~~d~p~a~D~~~l~~~l 76 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIP-----E--SERAYTNYDHPKSLEHDLLTTHL 76 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCC-----H--HHhcCCCCCChhhhCHHHHHHHH
Confidence 589999999999999999886 2 23 34778888876432110 0 00111112222334444443332
Q ss_pred cCChHHHHHHHhhhhHHHHHHHHHHHHH-HHhcCCcEEEEEeeeec-cccccccCCeEEEEEcCHHHHHHHHHhhC----
Q 026952 74 FSDSSKRQLLNGLLAPYISLGIFMEVLK-LWIKGCKVIVLDVPLLF-EAKMDKWTKPIVVVWVDPDTQLQRLMARD---- 147 (230)
Q Consensus 74 ~~~~~~~~~l~~~~~p~v~~~~~~~~~~-~~~~~~~~viie~~~~~-e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~---- 147 (230)
..+.....+..|.+.......... ....+.+++|+||..++ ...+...+|+.||+++|.++++.|+.+|+
T Consensus 77 ----~~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~r 152 (210)
T PTZ00301 77 ----RELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRER 152 (210)
T ss_pred ----HHHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhc
Confidence 111111122223332211111110 01124578999998775 45566778999999999999999998886
Q ss_pred CCCHHHHHHHHHhc-CC-----cccccccCCEEEeCCCCHHHHHHHHHHHHHHhhC
Q 026952 148 RTSEEDARNRINAQ-MP-----LDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 197 (230)
Q Consensus 148 ~~~~~~~~~r~~~~-~~-----~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~ 197 (230)
|.+.+.+..++... .+ .++.+..||+||.++++-+.....+...+...++
T Consensus 153 G~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~~~~~ 208 (210)
T PTZ00301 153 GRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLNHDLE 208 (210)
T ss_pred CCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHHHHcc
Confidence 67888887766553 22 3567788999998777655555555555555443
No 24
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.73 E-value=1e-16 Score=122.50 Aligned_cols=164 Identities=18% Similarity=0.196 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcC-CchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKK-GTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
++|+|.|+|||||.|+|..+. ++|++++|++++.|..... ++..+..+.+.... |.+-...
T Consensus 9 ~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~------G~iVP~e----------- 71 (195)
T KOG3079|consen 9 PIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKN------GDLVPVE----------- 71 (195)
T ss_pred CEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHc------CCcCcHH-----------
Confidence 589999999999999999999 7999999999999987765 55555555554422 2111100
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeee-------eccccccccCCeEEEEEcCHHHHHHHHHhhCC----
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPL-------LFEAKMDKWTKPIVVVWVDPDTQLQRLMARDR---- 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~-------~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~---- 148 (230)
+ +...+.+.+.... +.+.+++||.- -++..+....++++|++|+.+++.+|+.+|+.
T Consensus 72 ------i----~~~LL~~am~~~~--~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R 139 (195)
T KOG3079|consen 72 ------I----TLSLLEEAMRSSG--DSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSR 139 (195)
T ss_pred ------H----HHHHHHHHHHhcC--CCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCC
Confidence 0 1111122222221 22237888632 23333444578999999999999999999863
Q ss_pred --CCHHHHHHHHHhc----CCcccccccCC--EEEeCCCCHHHHHHHHHHHHHH
Q 026952 149 --TSEEDARNRINAQ----MPLDIKRNNAD--IVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 149 --~~~~~~~~r~~~~----~~~~~~~~~ad--~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
.+.+.+.+|++.+ .+...++...+ .-|+.++++++++.++.+.+..
T Consensus 140 ~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 140 SDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred CCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 4678888887643 34444554443 3589999999999999988754
No 25
>PRK04182 cytidylate kinase; Provisional
Probab=99.72 E-value=7.8e-16 Score=120.14 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|+|+|+|++||||||+|+.|+ ++|++++++|++.+......+.....+.+ ++..
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~-~~~~------------------------ 55 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNK-YAEE------------------------ 55 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHH-Hhhc------------------------
Confidence 479999999999999999999 69999999988877654322221222111 1000
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA 160 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~ 160 (230)
++.+...+..........+++ +|+++....- ......+++||+++|++++.+|+.+|.+.+.+++...+..
T Consensus 56 -------~~~~~~~~~~~~~~~~~~~~~-~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~ 126 (180)
T PRK04182 56 -------DPEIDKEIDRRQLEIAEKEDN-VVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIE 126 (180)
T ss_pred -------CchHHHHHHHHHHHHHhcCCC-EEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 000011111111111112333 5667642110 0112267899999999999999999977666655433211
Q ss_pred c-----------C-CcccccccCCEEEeCCC-CHHHHHHHHHHHHHHhhC
Q 026952 161 Q-----------M-PLDIKRNNADIVINNTG-TLDDLNEQVRKVLFEIKR 197 (230)
Q Consensus 161 ~-----------~-~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~~~~ 197 (230)
. . .....+..+|++||++. +++++.+.|.+.++....
T Consensus 127 ~d~~~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~~~~ 176 (180)
T PRK04182 127 REESEAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTAIDKLLK 176 (180)
T ss_pred HHHHHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 1 0 01122367899999987 899999999998876543
No 26
>PRK07667 uridine kinase; Provisional
Probab=99.72 E-value=2.2e-18 Score=136.59 Aligned_cols=165 Identities=21% Similarity=0.173 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh----CC--CcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcC
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA----ND--VPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFS 75 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~----~g--~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 75 (230)
.+|+|+|++||||||+|+.|++ .| ..+++.|+++.+.............+.++ ..++...+...++.
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~-------~~~d~~~L~~~v~~ 90 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYY-------LQWDIEWLRQKFFR 90 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhh-------hhhhHHHHHHHHHH
Confidence 4899999999999999999983 34 45999999876433210000000000000 01234444333321
Q ss_pred ChHHHHHHHhhhhHHHHHHHHHHHHHH-HhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHH
Q 026952 76 DSSKRQLLNGLLAPYISLGIFMEVLKL-WIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDA 154 (230)
Q Consensus 76 ~~~~~~~l~~~~~p~v~~~~~~~~~~~-~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~ 154 (230)
.+...+.+.+|.+........... ...+.+++|+||+++++..+...+|.+||++||++++++|+.+|++.+.+..
T Consensus 91 ---~L~~~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~~~~~~~ 167 (193)
T PRK07667 91 ---KLQNETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQKNLSKF 167 (193)
T ss_pred ---hhcCCCeEEEeeeccccccccccceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcccHhHHHHH
Confidence 112224456665544332211111 1134579999999998888888899999999999999999999988888888
Q ss_pred HHHHHhc----CCcccccccCCEEEe
Q 026952 155 RNRINAQ----MPLDIKRNNADIVIN 176 (230)
Q Consensus 155 ~~r~~~~----~~~~~~~~~ad~iI~ 176 (230)
+.|+... .........||++++
T Consensus 168 ~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 168 KNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred HHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 8887322 233334677898874
No 27
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.70 E-value=1.9e-15 Score=117.06 Aligned_cols=156 Identities=18% Similarity=0.151 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|+|+|++||||||+|+.|+ ++|+++++.|++.++..+..+... ..+......
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~--------------------~~~~~~~~~----- 55 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDL--------------------IEFLNYAEE----- 55 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCH--------------------HHHHHHHhc-----
Confidence 489999999999999999999 689999999887766443211101 111000000
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA 160 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~ 160 (230)
+|.+...+...+......+. .+|+++....- .+...+|++||+++|++++.+|+.+|++.+.+++..++..
T Consensus 56 -------~~~~~~~~~~~i~~~~~~~~-~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~ 126 (171)
T TIGR02173 56 -------NPEIDKKIDRRIHEIALKEK-NVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIE 126 (171)
T ss_pred -------CcHHHHHHHHHHHHHHhcCC-CEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 01111111111222211233 45678653211 1123468999999999999999999988888877766532
Q ss_pred cC------------CcccccccCCEEEeCCC-CHHHHHHHHHHHH
Q 026952 161 QM------------PLDIKRNNADIVINNTG-TLDDLNEQVRKVL 192 (230)
Q Consensus 161 ~~------------~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l 192 (230)
.. ........+|++||++. ++++ .+.|.+.+
T Consensus 127 ~d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 127 REESEKRRYLKFYGIDIDDLSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred HHHHHHHHHHHHhCCCccccccccEEEECCCCCHHH-HHHHHHHh
Confidence 21 01122356789999987 7888 77777653
No 28
>PLN02200 adenylate kinase family protein
Probab=99.68 E-value=1.5e-15 Score=123.67 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|+|.|+|||||||+|+.|+ ++|+.+++++++.++....+.+.+..+.+.... |.+. ++
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~------G~~v-----------p~-- 104 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKE------GKIV-----------PS-- 104 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHc------CCCC-----------cH--
Confidence 589999999999999999999 689999999988886554444434333332211 1100 00
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecc-------ccccccCCeEEEEEcCHHHHHHHHHhhCC----C
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFE-------AKMDKWTKPIVVVWVDPDTQLQRLMARDR----T 149 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e-------~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~----~ 149 (230)
.+..+.+ .+.+.. .....+++||..... ......+|.++++++|++++.+|+.+|.. .
T Consensus 105 ----e~~~~~l----~~~l~~---~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd 173 (234)
T PLN02200 105 ----EVTVKLI----QKEMES---SDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDD 173 (234)
T ss_pred ----HHHHHHH----HHHHhc---CCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCC
Confidence 0011111 111111 112236888632111 11123468999999999999999998842 3
Q ss_pred CHHHHHHHHHhcCC----ccccccc-CC-EEEeCCCCHHHHHHHHHHHHHHhhC
Q 026952 150 SEEDARNRINAQMP----LDIKRNN-AD-IVINNTGTLDDLNEQVRKVLFEIKR 197 (230)
Q Consensus 150 ~~~~~~~r~~~~~~----~~~~~~~-ad-~iI~n~~~~~~v~~~i~~~l~~~~~ 197 (230)
+.+.+.+|++.+.. ....+.. .. +.||++++++++.+.+.+.+....+
T Consensus 174 ~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 174 NIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEA 227 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 45667777654332 2222222 23 4689999999999999999886554
No 29
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.67 E-value=3.1e-15 Score=117.58 Aligned_cols=165 Identities=20% Similarity=0.222 Sum_probs=100.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
+++|+|.|+|||||||+|+.|+ .+|+.+++++++.+.....+.+....+...+....+ +....
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----------- 66 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDL-----VPLDT----------- 66 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCC-----CCHHH-----------
Confidence 4689999999999999999999 689999999988776433333333333222211100 00000
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeee--e-----ccccccccCCeEEEEEcCHHHHHHHHHhhCC----
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPL--L-----FEAKMDKWTKPIVVVWVDPDTQLQRLMARDR---- 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~--~-----~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~---- 148 (230)
+...+...+...... +..+|+|+.. . ++..+ ...|.++++++|++++.+|+.+|..
T Consensus 67 -----------~~~~l~~~~~~~~~~-~~~~i~dg~~~~~~q~~~~~~~~-~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r 133 (188)
T TIGR01360 67 -----------VLDLLKDAMVAALGT-SKGFLIDGYPREVKQGEEFERRI-GPPTLVLYFDCSEDTMVKRLLKRAETSGR 133 (188)
T ss_pred -----------HHHHHHHHHHcccCc-CCeEEEeCCCCCHHHHHHHHHcC-CCCCEEEEEECCHHHHHHHHHcccccCCC
Confidence 011111112111112 3446788632 1 11111 2368999999999999999998863
Q ss_pred --CCHHHHHHHHHhcC----Cccccc-ccCCE-EEeCCCCHHHHHHHHHHHHHH
Q 026952 149 --TSEEDARNRINAQM----PLDIKR-NNADI-VINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 149 --~~~~~~~~r~~~~~----~~~~~~-~~ad~-iI~n~~~~~~v~~~i~~~l~~ 194 (230)
.+.+.+.+|+.... +....+ ...++ ++|++++++++.++|.+.+..
T Consensus 134 ~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 134 VDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred CCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 25667777775432 222222 23454 689999999999999988763
No 30
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.66 E-value=1.8e-15 Score=118.71 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=96.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
+|+|.|+|||||||+|+.|+ ++|+.+++++++.+.....+.+....+.+.+.. .+.+..+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~------------ 63 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKN-----GKIVPSEVT------------ 63 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHC-----CCcCCHHHH------------
Confidence 58999999999999999999 699999999888776544333322222222111 011110000
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecc---cc----c--cccCCeEEEEEcCHHHHHHHHHhhCC----
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFE---AK----M--DKWTKPIVVVWVDPDTQLQRLMARDR---- 148 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e---~~----~--~~~~d~vi~l~~~~~~~~~Rl~~R~~---- 148 (230)
...+.+.+.. .+...+|+|+..... .. . ...+|.+|++++|++++.+|+.+|..
T Consensus 64 ----------~~ll~~~~~~---~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r 130 (183)
T TIGR01359 64 ----------VKLLKNAIQA---DGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGR 130 (183)
T ss_pred ----------HHHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCC
Confidence 0011111111 113346888631110 00 1 12468899999999999999998853
Q ss_pred --CCHHHHHHHHHhcC----CcccccccCC--EEEeCCCCHHHHHHHHHHHH
Q 026952 149 --TSEEDARNRINAQM----PLDIKRNNAD--IVINNTGTLDDLNEQVRKVL 192 (230)
Q Consensus 149 --~~~~~~~~r~~~~~----~~~~~~~~ad--~iI~n~~~~~~v~~~i~~~l 192 (230)
.+.+.+.+|++.+. +....+...+ +.||++++++++.+++.+++
T Consensus 131 ~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 131 VDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 25677777765332 2222233333 46999999999999998765
No 31
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.66 E-value=1.4e-15 Score=115.37 Aligned_cols=150 Identities=23% Similarity=0.255 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
|+|+|+|.||+||||+|+.|+++|+.+++..++.++-. .+.. .+-.+..-.++-..+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~~lg~~~i~l~el~~e~~-----~~~~------~de~r~s~~vD~d~~~----------- 58 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLRELGYKVIELNELAKENG-----LYTE------YDELRKSVIVDVDKLR----------- 58 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHHHhCCceeeHHHHHHhcC-----Ceec------cCCccceEEeeHHHHH-----------
Confidence 68999999999999999999999999999988765411 0100 0000000001111110
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhc
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQ 161 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~ 161 (230)
..+.... .....|+|+.+..-. ..+|++|.|.|+|+++.+|+++| |++++++...++++
T Consensus 59 ---------------~~le~~~--~~~~~Ivd~H~~hl~---~~~dlVvVLR~~p~~L~~RLk~R-Gy~~eKI~ENveAE 117 (180)
T COG1936 59 ---------------KRLEELL--REGSGIVDSHLSHLL---PDCDLVVVLRADPEVLYERLKGR-GYSEEKILENVEAE 117 (180)
T ss_pred ---------------HHHHHHh--ccCCeEeechhhhcC---CCCCEEEEEcCCHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 1111111 112246775433221 24799999999999999999999 99999998887765
Q ss_pred CC---cccccc--cCCEEEeCC-CCHHHHHHHHHHHHHH
Q 026952 162 MP---LDIKRN--NADIVINNT-GTLDDLNEQVRKVLFE 194 (230)
Q Consensus 162 ~~---~~~~~~--~ad~iI~n~-~~~~~v~~~i~~~l~~ 194 (230)
+- ..+..+ .+.+.+|+. .+++++.+.|.+++..
T Consensus 118 i~~vi~~EA~E~~~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 118 ILDVILIEAVERFEAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred HHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHcc
Confidence 42 112222 234567754 4999999999999985
No 32
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.66 E-value=1.2e-14 Score=129.43 Aligned_cols=194 Identities=10% Similarity=0.143 Sum_probs=112.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhh----cCCc-----hHHHHHHHHhCCcccCC-CC----ccC
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVL----KKGT-----GGWKKVVAAFGEDILLP-NG----EVD 65 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~----~~~~-----~~~~~l~~~~~~~~~~~-~~----~~~ 65 (230)
+++|+|+|++||||||+|+.|+ ++|+.++++|.++|.+. +.+- .....+.+.+....... ++ .++
T Consensus 284 ~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~~~ 363 (512)
T PRK13477 284 QPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVWIN 363 (512)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEEeC
Confidence 3689999999999999999999 79999999999998752 1110 11122222221111000 00 001
Q ss_pred HHHHHhhhcCChHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHH
Q 026952 66 RSKLGQIVFSDSSKRQLLNGL-LAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLM 144 (230)
Q Consensus 66 ~~~l~~~~~~~~~~~~~l~~~-~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~ 144 (230)
-..+...+- +++--...+.+ ..|.+.+.+.....+.. +.++ +|+||+.+...-+. ..|+.|||+|+++++.+|+.
T Consensus 364 ~~dv~~~iR-s~eV~~~vS~ia~~p~VR~~l~~~qr~~~-~~~~-iV~eGRDigtvV~P-~AdlKIfL~As~evRa~RR~ 439 (512)
T PRK13477 364 GEDVTEAIR-SPEVTSSVSAIAAQPAVRQALVKQQQRIG-EKGG-LVAEGRDIGTHVFP-DAELKIFLTASVEERARRRA 439 (512)
T ss_pred CcchHhhhc-chhHHHHHHHHhCCHHHHHHHHHHHHHHh-hcCC-EEEEcccceeEEcC-CCCEEEEEECCHHHHHHHHH
Confidence 111111111 11111222222 45666666655555443 2333 79998865544332 35899999999999999875
Q ss_pred hh---CC---CCHHHHHHHHH----hcC--Cccccccc-CCEEEeCCC-CHHHHHHHHHHHHHHhhCC
Q 026952 145 AR---DR---TSEEDARNRIN----AQM--PLDIKRNN-ADIVINNTG-TLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 145 ~R---~~---~~~~~~~~r~~----~~~--~~~~~~~~-ad~iI~n~~-~~~~v~~~i~~~l~~~~~~ 198 (230)
++ .+ .+.+.+...+. ... ...+.+.. ++++||+++ +++++.++|.+.++..+.+
T Consensus 440 ~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~lsieeVv~~Il~~i~~~~~~ 507 (512)
T PRK13477 440 LDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVDKIIDLYRDRIPE 507 (512)
T ss_pred hhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCCHHHHHHHHHHHHHHhCcc
Confidence 44 12 23444433332 222 23355554 457899876 9999999999999875555
No 33
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.66 E-value=1.7e-16 Score=124.83 Aligned_cols=66 Identities=21% Similarity=0.219 Sum_probs=56.0
Q ss_pred eEEEEEcC-HHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 128 PIVVVWVD-PDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 128 ~vi~l~~~-~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
.+||+.+| .+++.+|+.+|+..+++++..|++.+.........+|++|+|+ +++++.+++.+++..
T Consensus 118 ~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~~~~~D~vI~N~-dle~a~~ql~~ii~~ 184 (186)
T PRK14737 118 VTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDEANEFDYKIIND-DLEDAIADLEAIICG 184 (186)
T ss_pred EEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCCEEEECc-CHHHHHHHHHHHHhc
Confidence 57899886 5889999999988899999999988765555667899999999 899999999988753
No 34
>PRK13808 adenylate kinase; Provisional
Probab=99.65 E-value=4.1e-15 Score=125.66 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=104.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
.|+|.|+|||||||+|+.|+ .+|+.+++++++.++....+.+....+.+.+. .|.+-.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~------~G~lVPd-------------- 61 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMA------SGGLVPD-------------- 61 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHH------cCCCCCH--------------
Confidence 37889999999999999999 79999999999988766555444433333321 1111100
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeecc------ccc---cccCCeEEEEEcCHHHHHHHHHhhC----
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLFE------AKM---DKWTKPIVVVWVDPDTQLQRLMARD---- 147 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~e------~~~---~~~~d~vi~l~~~~~~~~~Rl~~R~---- 147 (230)
+++...+. +.+.... .. .-+|+|| |-..+ ..+ .-..|++|+|++|++++++|+..|.
T Consensus 62 ---eiv~~li~----e~l~~~~-~~-~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~ 132 (333)
T PRK13808 62 ---EVVVGIIS----DRIEQPD-AA-NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMR 132 (333)
T ss_pred ---HHHHHHHH----HHHhccc-cc-CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCccccc
Confidence 01111111 1221110 11 2357785 22111 111 1246999999999999999998871
Q ss_pred --------CCCHHHHHHHHHhcCC----cccccccCC--EEEeCCCCHHHHHHHHHHHHHHhhCC
Q 026952 148 --------RTSEEDARNRINAQMP----LDIKRNNAD--IVINNTGTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 148 --------~~~~~~~~~r~~~~~~----~~~~~~~ad--~iI~n~~~~~~v~~~i~~~l~~~~~~ 198 (230)
..+.+.+.+|+..+.. +..++...+ +.||++.++++|.++|.++|..+...
T Consensus 133 ~rg~~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~~ 197 (333)
T PRK13808 133 ARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGAA 197 (333)
T ss_pred ccCCccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhCC
Confidence 2457788888864432 233333332 46899999999999999999876655
No 35
>PRK14531 adenylate kinase; Provisional
Probab=99.64 E-value=7.8e-15 Score=115.28 Aligned_cols=161 Identities=20% Similarity=0.271 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
+.|+|.|+|||||||+|+.|+ .+|+.+++++++.+.....+.+....+.+... .|.+..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~------~G~~v~d~------------ 64 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMN------RGELVSDA------------ 64 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHH------cCCCCCHH------------
Confidence 368999999999999999999 79999999988887655444433333332211 11111000
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eec-ccc--------ccccCCeEEEEEcCHHHHHHHHHhhCC--
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLF-EAK--------MDKWTKPIVVVWVDPDTQLQRLMARDR-- 148 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~-e~~--------~~~~~d~vi~l~~~~~~~~~Rl~~R~~-- 148 (230)
+... .+.+.+... .+.+ +|+|+. .-. +.. .....+.++++++|++++.+|+..|..
T Consensus 65 -----l~~~----~~~~~l~~~--~~~g-~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~d 132 (183)
T PRK14531 65 -----LVLA----IVESQLKAL--NSGG-WLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRAD 132 (183)
T ss_pred -----HHHH----HHHHHHhhc--cCCc-EEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCC
Confidence 1111 111112111 1233 566853 211 110 112457899999999999999998854
Q ss_pred CCHHHHHHHHHhcC----CcccccccCC--EEEeCCCCHHHHHHHHHHHH
Q 026952 149 TSEEDARNRINAQM----PLDIKRNNAD--IVINNTGTLDDLNEQVRKVL 192 (230)
Q Consensus 149 ~~~~~~~~r~~~~~----~~~~~~~~ad--~iI~n~~~~~~v~~~i~~~l 192 (230)
.+++.+.+|++.+. +....+...+ ..||++++++++.++|.+.+
T Consensus 133 D~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 133 DNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 55777788876543 2222222222 46899999999999998765
No 36
>PRK02496 adk adenylate kinase; Provisional
Probab=99.64 E-value=6.8e-15 Score=115.61 Aligned_cols=164 Identities=19% Similarity=0.207 Sum_probs=100.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|+.|+|.|+|||||||+|+.|+ .+|+.+++++++.++....+.+....+...+. .|... ++
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~------~g~~~-----------~~- 62 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMD------KGELV-----------PD- 62 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHH------CCCcc-----------CH-
Confidence 7889999999999999999999 68999999999887765433333322222211 11000 00
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-ee------cccc---ccccCCeEEEEEcCHHHHHHHHHhhCC-
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LL------FEAK---MDKWTKPIVVVWVDPDTQLQRLMARDR- 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~------~e~~---~~~~~d~vi~l~~~~~~~~~Rl~~R~~- 148 (230)
.+. ...+.+.+... .....+++||. -. ++.. +....|.++++++|++++.+|+..|..
T Consensus 63 -----~~~----~~~l~~~l~~~--~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~ 131 (184)
T PRK02496 63 -----QLV----LDLVQERLQQP--DAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK 131 (184)
T ss_pred -----HHH----HHHHHHHHhCc--CccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC
Confidence 001 11111122111 11123577853 21 1111 123468999999999999999998864
Q ss_pred -CCHHHHHHHHHhcCC----ccccccc-CC-EEEeCCCCHHHHHHHHHHHHH
Q 026952 149 -TSEEDARNRINAQMP----LDIKRNN-AD-IVINNTGTLDDLNEQVRKVLF 193 (230)
Q Consensus 149 -~~~~~~~~r~~~~~~----~~~~~~~-ad-~iI~n~~~~~~v~~~i~~~l~ 193 (230)
.+++.+.+|++.+.. ....+.. .. +.||++++++++.++|.+.+.
T Consensus 132 dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 132 DDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence 456777777765432 2222222 22 468999999999999988763
No 37
>PRK14528 adenylate kinase; Provisional
Probab=99.64 E-value=6.1e-15 Score=116.17 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=102.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|+.|+|.|+|||||||+|+.|+ .+|+++++++++.+.....+......+...+. .|.+....
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~------~g~lvp~~----------- 63 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMD------AGDLVPDS----------- 63 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHh------CCCccCHH-----------
Confidence 8899999999999999999999 79999999999988766555444433332221 11110000
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-ee------ccccc---cccCCeEEEEEcCHHHHHHHHHhhC--
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LL------FEAKM---DKWTKPIVVVWVDPDTQLQRLMARD-- 147 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~------~e~~~---~~~~d~vi~l~~~~~~~~~Rl~~R~-- 147 (230)
. +...+.+.+.+. .....+|+|+. .. ++..+ ....|.+|++++|++++.+|+..|.
T Consensus 64 ------~----~~~~~~~~l~~~--~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~ 131 (186)
T PRK14528 64 ------V----VIGIIKDRIREA--DCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI 131 (186)
T ss_pred ------H----HHHHHHHHHhCc--CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc
Confidence 0 111112222211 11223677863 11 11111 1247899999999999999999874
Q ss_pred ----CCCHHHHHHHHHhcC----CcccccccCC--EEEeCCCCHHHHHHHHHHH
Q 026952 148 ----RTSEEDARNRINAQM----PLDIKRNNAD--IVINNTGTLDDLNEQVRKV 191 (230)
Q Consensus 148 ----~~~~~~~~~r~~~~~----~~~~~~~~ad--~iI~n~~~~~~v~~~i~~~ 191 (230)
..+++.+.+|++.+. +....+.... ..||.+++++++.+.+.+.
T Consensus 132 ~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 132 EGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 256888999986543 3333333222 3689999999999988764
No 38
>PRK14532 adenylate kinase; Provisional
Probab=99.63 E-value=1.7e-14 Score=113.78 Aligned_cols=162 Identities=13% Similarity=0.122 Sum_probs=98.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
.|+|.|+|||||||+|+.|+ ++|+.++++|++.++....+.+....+.+.+.. .+.+....
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~-----g~~~~~~~------------- 63 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDR-----GELVSDEI------------- 63 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHC-----CCccCHHH-------------
Confidence 48889999999999999999 799999999998887654444444444443311 11111100
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-ee------ccccc---cccCCeEEEEEcCHHHHHHHHHhhC----
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LL------FEAKM---DKWTKPIVVVWVDPDTQLQRLMARD---- 147 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~------~e~~~---~~~~d~vi~l~~~~~~~~~Rl~~R~---- 147 (230)
+ ...+.+.+... .....+++|+. .. ++..+ ...+|.++++++|+++..+|+.+|.
T Consensus 64 -----~----~~~~~~~~~~~--~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~ 132 (188)
T PRK14532 64 -----V----IALIEERLPEA--EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQG 132 (188)
T ss_pred -----H----HHHHHHHHhCc--CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCC
Confidence 1 11111111111 12234677852 11 11101 1235789999999999999999873
Q ss_pred --CCCHHHHHHHHHhcCC----cccccccCC--EEEeCCCCHHHHHHHHHHHHH
Q 026952 148 --RTSEEDARNRINAQMP----LDIKRNNAD--IVINNTGTLDDLNEQVRKVLF 193 (230)
Q Consensus 148 --~~~~~~~~~r~~~~~~----~~~~~~~ad--~iI~n~~~~~~v~~~i~~~l~ 193 (230)
..+.+.+.+|++.... ..+.+...+ +.||.+.+++++.++|.+.+.
T Consensus 133 r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 133 RPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 1346667777754432 223333333 357888899999999998774
No 39
>PRK13949 shikimate kinase; Provisional
Probab=99.63 E-value=1.1e-14 Score=113.00 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=88.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|+.|+|.|+|||||||+++.|+ .+|+.++++|.+...... .....+.+.+|...+
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~---~~~~~~~~~~g~~~f--------------------- 56 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH---KTVGDIFAERGEAVF--------------------- 56 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC---ccHHHHHHHhCHHHH---------------------
Confidence 7889999999999999999999 689999999988654332 112333333322111
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeee--ccc--cccccCCeEEEEEcCHHHHHHHHHhhC--C-----
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLL--FEA--KMDKWTKPIVVVWVDPDTQLQRLMARD--R----- 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~--~e~--~~~~~~d~vi~l~~~~~~~~~Rl~~R~--~----- 148 (230)
.+. ...+...+ ....++|+..|-.. ... ..-...+.+|||++|++++.+|+..+. +
T Consensus 57 r~~---------e~~~l~~l----~~~~~~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~ 123 (169)
T PRK13949 57 REL---------ERNMLHEV----AEFEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAKQQRPLLKG 123 (169)
T ss_pred HHH---------HHHHHHHH----HhCCCEEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCCCCCCCCCC
Confidence 000 01111111 12234555554322 211 122335889999999999999997431 1
Q ss_pred CCHHHHHHHHHhcC-CcccccccCCEEEeCCC-CHHHHHHHHHH
Q 026952 149 TSEEDARNRINAQM-PLDIKRNNADIVINNTG-TLDDLNEQVRK 190 (230)
Q Consensus 149 ~~~~~~~~r~~~~~-~~~~~~~~ad~iI~n~~-~~~~v~~~i~~ 190 (230)
.+.++....+...+ ...+.+..||++|++++ +++++.++|.+
T Consensus 124 ~~~~~~~~~i~~l~~~R~~~Y~~ad~~id~~~~~~~e~~~~I~~ 167 (169)
T PRK13949 124 KSDEELLDFIIEALEKRAPFYRQAKIIFNADKLEDESQIEQLVQ 167 (169)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHH
Confidence 12233322222111 23345556899999877 77777766654
No 40
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.62 E-value=1.9e-15 Score=120.10 Aligned_cols=169 Identities=19% Similarity=0.208 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-C---CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChH
Q 026952 3 IVGLTGGISSGKSTVSNLFKA-N---DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSS 78 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~-~---g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (230)
+|+|+|++||||||+++.|.. + +..+++.|+++........ . ..... .+...+..+.+.+.+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~---~---~~~~~-~~~~~~~~~~~~~~~~l~---- 69 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEEL---E---ERKNN-NYDHPDAFDFDLLISHLQ---- 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccH---H---HhccC-CCCCCCcccHHHHHHHHH----
Confidence 589999999999999999994 3 4678999998754332211 0 11111 111112222222211110
Q ss_pred HHHHHHhhhhHHHHHHHHHHHH-HHHhcCCcEEEEEeeeecc-ccccccCCeEEEEEcCHHHHHHHHHhhC----CCCHH
Q 026952 79 KRQLLNGLLAPYISLGIFMEVL-KLWIKGCKVIVLDVPLLFE-AKMDKWTKPIVVVWVDPDTQLQRLMARD----RTSEE 152 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~~-~~~~~~~~~viie~~~~~e-~~~~~~~d~vi~l~~~~~~~~~Rl~~R~----~~~~~ 152 (230)
....-..+..|.+......... .....+..++++|++..+. ......+|.+||+++|.+++++|+.+|+ +.+.+
T Consensus 70 ~l~~~~~~~~p~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~ 149 (198)
T cd02023 70 DLKNGKSVEIPVYDFKTHSRLKETVTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLE 149 (198)
T ss_pred HHHCCCCEeccccccccCcccCCceecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHH
Confidence 0000000111111100000000 0011345688999887765 3455678999999999999999888775 46777
Q ss_pred HHHHHHHhcCC------cccccccCCEEEeCCCCHH
Q 026952 153 DARNRINAQMP------LDIKRNNADIVINNTGTLD 182 (230)
Q Consensus 153 ~~~~r~~~~~~------~~~~~~~ad~iI~n~~~~~ 182 (230)
++..++..+.. ..+....||++|+|+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~~~~ 185 (198)
T cd02023 150 SVINQYLKFVKPMHEQFIEPTKRYADVIIPRGGDNH 185 (198)
T ss_pred HHHHHHHHhhhhhHHHhCccchhceeEEECCCCCcc
Confidence 77677654432 2346677999999877654
No 41
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.62 E-value=2.2e-16 Score=125.23 Aligned_cols=166 Identities=18% Similarity=0.253 Sum_probs=90.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH-h---CCCc------EEehhhhhHHhhcCCchHHHHHHHHhCCcc--cCCCCccCHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-A---NDVP------VVDADIIARDVLKKGTGGWKKVVAAFGEDI--LLPNGEVDRSKLG 70 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~---~g~~------~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~l~ 70 (230)
+|+|+|+|||||||+|+.|+ . .|.. +++.|.++...... .. ...+... +.....++...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~--~~~~~~~~~~~~p~a~d~~~l~ 73 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLR-----DR--KGRGENRYNFDHPDAFDFDLLK 73 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHH-----HH--HHHCTTTSSTTSGGGBSHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchh-----hH--hhccccccCCCCccccCHHHHH
Confidence 69999999999999999998 2 3443 66778776432210 00 1111111 1112233443333
Q ss_pred hhhcCChHHHHHHHhhhhHHHHHHHHHHHH-HHHhcCCcEEEEEeeee-ccccccccCCeEEEEEcCHHHHHHHHHhhC-
Q 026952 71 QIVFSDSSKRQLLNGLLAPYISLGIFMEVL-KLWIKGCKVIVLDVPLL-FEAKMDKWTKPIVVVWVDPDTQLQRLMARD- 147 (230)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~p~v~~~~~~~~~-~~~~~~~~~viie~~~~-~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~- 147 (230)
+.+. .+.....+..|.+......... .....+.+++|+||... ....++..+|+.||++++.+++..|+..|+
T Consensus 74 ~~l~----~L~~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~ 149 (194)
T PF00485_consen 74 EDLK----ALKNGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDV 149 (194)
T ss_dssp HHHH----HHHTTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHH
T ss_pred HHHH----HHhCCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhc
Confidence 2210 0000011111111000000000 00013457899998764 455577889999999999999999888775
Q ss_pred ---CCCHHHHHHHHHhcCC-----cccccccCCEEEeCCC
Q 026952 148 ---RTSEEDARNRINAQMP-----LDIKRNNADIVINNTG 179 (230)
Q Consensus 148 ---~~~~~~~~~r~~~~~~-----~~~~~~~ad~iI~n~~ 179 (230)
|.+.+++..++....+ ..+.++.||++|++..
T Consensus 150 ~~rG~~~~~~~~~~~~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 150 AERGRSPEEVIAQYERVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHS-S-HHHHHHHHHTHHHHHHHCTGGGGGG-SEEEESCT
T ss_pred cccCCcceeEEEEeecCChhhhhheeccccccEEEECCCC
Confidence 7888888887763322 5667789999998754
No 42
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.61 E-value=8.9e-15 Score=111.98 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=98.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
++.|++.|++||||||+++.|+ ++|++++++|..+.... ++...++++..|+..|+.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~---g~sI~eIF~~~GE~~FR~------------------- 59 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT---GMSIAEIFEEEGEEGFRR------------------- 59 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH---CcCHHHHHHHHhHHHHHH-------------------
Confidence 4579999999999999999999 69999999999876644 345677777776654421
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEE--eeeecccccc--ccCCeEEEEEcCHHHHHHHHHhhCC------C
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLD--VPLLFEAKMD--KWTKPIVVVWVDPDTQLQRLMARDR------T 149 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie--~~~~~e~~~~--~~~d~vi~l~~~~~~~~~Rl~~R~~------~ 149 (230)
....++ .+ .. ...+.||.- |..+.++... .....+|||++|+++.++|+..... .
T Consensus 60 --~E~~vl---------~~---l~-~~~~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~ 124 (172)
T COG0703 60 --LETEVL---------KE---LL-EEDNAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTE 124 (172)
T ss_pred --HHHHHH---------HH---Hh-hcCCeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCC
Confidence 111111 01 11 122333443 2344444322 1124789999999999999983321 2
Q ss_pred CH-HHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHh
Q 026952 150 SE-EDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEI 195 (230)
Q Consensus 150 ~~-~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~ 195 (230)
++ +.+..-++...+. +.+.||++++++...+.+.++|.+.+...
T Consensus 125 ~~~~~l~~L~~~R~~~--Y~e~a~~~~~~~~~~~~v~~~i~~~l~~~ 169 (172)
T COG0703 125 DPREELEELLEERQPL--YREVADFIIDTDDRSEEVVEEILEALEGS 169 (172)
T ss_pred ChHHHHHHHHHHHHHH--HHHhCcEEecCCCCcHHHHHHHHHHHHHh
Confidence 23 3344444433333 23458899988876688888888877643
No 43
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.61 E-value=1.6e-15 Score=116.65 Aligned_cols=173 Identities=16% Similarity=0.142 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCc-EEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVP-VVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~-~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
++|+|+||||+||||+.+.|. +.++. .||..+-.....+.++..|. .++++.|.+.+ +..+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~---------------Fvs~~EF~~~i-~~~~f 68 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYF---------------FVTEEEFEELI-ERDEF 68 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeE---------------eCCHHHHHHHH-hcCCc
Confidence 589999999999999999999 44542 45554433322222222221 23333333322 11111
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccC-C-eEEEEEcCH-HHHHHHHHhhCCCCHHHHHH
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWT-K-PIVVVWVDP-DTQLQRLMARDRTSEEDARN 156 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~-d-~vi~l~~~~-~~~~~Rl~~R~~~~~~~~~~ 156 (230)
++|.. ++..++.+....+......|.+ +++|..+......+..+ + ..||+.+|. +.+.+|+..|+..+++.+.+
T Consensus 69 LE~a~--~~gnyYGT~~~~ve~~~~~G~~-vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~ 145 (191)
T COG0194 69 LEWAE--YHGNYYGTSREPVEQALAEGKD-VILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIAR 145 (191)
T ss_pred EEEEE--EcCCcccCcHHHHHHHHhcCCe-EEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHH
Confidence 11111 1112222222233333345554 56665443322222222 4 468888876 56677888887899999999
Q ss_pred HHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 157 RINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 157 r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
|++...........+|++|.|+ +++...+++..++..
T Consensus 146 Rl~~a~~Ei~~~~~fdyvivNd-d~e~a~~~l~~ii~a 182 (191)
T COG0194 146 RLENAKKEISHADEFDYVIVND-DLEKALEELKSIILA 182 (191)
T ss_pred HHHHHHHHHHHHHhCCEEEECc-cHHHHHHHHHHHHHH
Confidence 9986654444455699999998 778888888887754
No 44
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.61 E-value=1e-15 Score=127.21 Aligned_cols=164 Identities=20% Similarity=0.159 Sum_probs=102.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh----CCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChH
Q 026952 3 IVGLTGGISSGKSTVSNLFKA----NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSS 78 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~----~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (230)
+|+|+|++||||||+++.|+. .+..++..|++.+. . . ......|...+.++ ..+-..+ +.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~-~---~----~~r~~~g~~~~~p~-~~~~d~l----~~~l~ 67 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSL-D---R----KGRKETGITALDPR-ANNFDLM----YEQLK 67 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccC-C---H----HHHHHhhccccccc-chhHHHH----HHHHH
Confidence 589999999999999999993 26678999987531 0 0 00112222222111 1111111 22233
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeee-ccccccccCCeEEEEEcCHHHHHH----HHHhhCCCCHHH
Q 026952 79 KRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLL-FEAKMDKWTKPIVVVWVDPDTQLQ----RLMARDRTSEED 153 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~-~e~~~~~~~d~vi~l~~~~~~~~~----Rl~~R~~~~~~~ 153 (230)
.++..+.+.+|.+..............+.+++|+||... .+..+...+|.+||+++|.+++.+ |..+|+|.+.++
T Consensus 68 ~Lk~g~~i~~P~y~~~~~~~~~~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~ 147 (273)
T cd02026 68 ALKEGQAIEKPIYNHVTGLIDPPELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLED 147 (273)
T ss_pred HHHCCCCcccccccccCCCcCCcEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHH
Confidence 445555666776654322110000013457899999874 466777889999999999999944 555566889999
Q ss_pred HHHHHHhcCCcc-----cccccCCEEEeCCC
Q 026952 154 ARNRINAQMPLD-----IKRNNADIVINNTG 179 (230)
Q Consensus 154 ~~~r~~~~~~~~-----~~~~~ad~iI~n~~ 179 (230)
+..+++.+.+.. +....||++|+...
T Consensus 148 v~~~i~~r~~~~~~~I~P~~~~ADvVI~~~p 178 (273)
T cd02026 148 VLASIEARKPDFEAYIDPQKQYADVVIQVLP 178 (273)
T ss_pred HHHHHHhhchhHHHHhccccccCcEEEEccC
Confidence 999997766533 35788999986553
No 45
>PLN02674 adenylate kinase
Probab=99.61 E-value=2.2e-14 Score=116.79 Aligned_cols=162 Identities=19% Similarity=0.152 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
+.|+|.|+|||||||+|+.|+ ++|+.+++++++.++....+.+....+.+.+. .|.+-.+.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~------~G~lvpd~------------ 93 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD------KGELVSDD------------ 93 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHH------cCCccCHH------------
Confidence 458899999999999999999 79999999999999877666666666655542 22211111
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eee------ccccc---cccCCeEEEEEcCHHHHHHHHHhhC---
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLL------FEAKM---DKWTKPIVVVWVDPDTQLQRLMARD--- 147 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~------~e~~~---~~~~d~vi~l~~~~~~~~~Rl~~R~--- 147 (230)
++...+ .+.+... .....+++|| |-. ++..+ ....|.+|++++|.+++.+|+..|.
T Consensus 94 -----iv~~lv----~~~l~~~--~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~ 162 (244)
T PLN02674 94 -----LVVGII----DEAMKKP--SCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHP 162 (244)
T ss_pred -----HHHHHH----HHHHhCc--CcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcccccc
Confidence 111111 1112111 1123367775 321 11111 1346899999999999999999872
Q ss_pred ------------------------------CCCHHHHHHHHHhcC----CcccccccCC--EEEeCCCCHHHHHHHHHHH
Q 026952 148 ------------------------------RTSEEDARNRINAQM----PLDIKRNNAD--IVINNTGTLDDLNEQVRKV 191 (230)
Q Consensus 148 ------------------------------~~~~~~~~~r~~~~~----~~~~~~~~ad--~iI~n~~~~~~v~~~i~~~ 191 (230)
.++++.+.+|++.+. ++..++..-. ..||.+++++++.++|.++
T Consensus 163 ~~g~~yn~~~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~ 242 (244)
T PLN02674 163 SSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKA 242 (244)
T ss_pred ccCCccccccCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHH
Confidence 235788888886543 3333343322 3689999999999999886
Q ss_pred H
Q 026952 192 L 192 (230)
Q Consensus 192 l 192 (230)
+
T Consensus 243 l 243 (244)
T PLN02674 243 L 243 (244)
T ss_pred h
Confidence 5
No 46
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.60 E-value=1.6e-14 Score=116.30 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=100.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
.|+|.|+|||||||+|+.|+ ++|+.+++++++.++....+.+....+.+.+... +.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g-----~~~p~~-------------- 62 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAG-----ELVPDE-------------- 62 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcC-----CcCCHH--------------
Confidence 58999999999999999999 7999999999988876655444444443332111 000100
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eecc--ccc-------cccCCeEEEEEcCHHHHHHHHHhhC----
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLFE--AKM-------DKWTKPIVVVWVDPDTQLQRLMARD---- 147 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~e--~~~-------~~~~d~vi~l~~~~~~~~~Rl~~R~---- 147 (230)
++ ...+.+.+... ....-+|+||. ...+ ..+ ....+.+|++++|.+++.+|+..|.
T Consensus 63 ----~~----~~~i~~~l~~~--~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~ 132 (215)
T PRK00279 63 ----IV----IGLVKERLAQP--DCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPA 132 (215)
T ss_pred ----HH----HHHHHHHHhcc--CccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCc
Confidence 01 11111122111 11223678862 2111 001 1235789999999999999999873
Q ss_pred -----------------------------CCCHHHHHHHHHhcC----CcccccccC-CE-EEeCCCCHHHHHHHHHHHH
Q 026952 148 -----------------------------RTSEEDARNRINAQM----PLDIKRNNA-DI-VINNTGTLDDLNEQVRKVL 192 (230)
Q Consensus 148 -----------------------------~~~~~~~~~r~~~~~----~~~~~~~~a-d~-iI~n~~~~~~v~~~i~~~l 192 (230)
..+++.+.+|++.+. +....+... -+ .||++++++++.++|.+.+
T Consensus 133 ~g~~~~~~~~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 212 (215)
T PRK00279 133 CGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKAL 212 (215)
T ss_pred cCCcccccCCCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHH
Confidence 245778888886443 222223222 23 5899999999999999987
Q ss_pred HH
Q 026952 193 FE 194 (230)
Q Consensus 193 ~~ 194 (230)
..
T Consensus 213 ~~ 214 (215)
T PRK00279 213 GK 214 (215)
T ss_pred hc
Confidence 64
No 47
>PRK04040 adenylate kinase; Provisional
Probab=99.60 E-value=6.2e-14 Score=110.49 Aligned_cols=161 Identities=21% Similarity=0.277 Sum_probs=95.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hC--CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCCh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-AN--DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS 77 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~--g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (230)
|++|+|+|.|||||||+++.|+ ++ ++.+++.+++.++.....+. ..+++.+...- .
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~------------------~~~~d~~r~l~---~ 60 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGL------------------VEHRDEMRKLP---P 60 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCC------------------CCCHHHHhhCC---h
Confidence 7899999999999999999999 56 89999999887664422110 11233332211 1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecccc---c--------c-ccCCeEEEEEcCHHHHHHHHHh
Q 026952 78 SKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAK---M--------D-KWTKPIVVVWVDPDTQLQRLMA 145 (230)
Q Consensus 78 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~---~--------~-~~~d~vi~l~~~~~~~~~Rl~~ 145 (230)
.....+.. .....+.+. .+...+++|+....... + . -..|.++++.+||++..+|+.+
T Consensus 61 ~~~~~~~~--------~a~~~i~~~--~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~ 130 (188)
T PRK04040 61 EEQKELQR--------EAAERIAEM--AGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLR 130 (188)
T ss_pred hhhHHHHH--------HHHHHHHHh--hcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhc
Confidence 11111111 111122221 23445788875432111 1 1 1347899999999999888874
Q ss_pred -----hCCCCHHHHHHHHHhcCCc----ccccccCCEEEeCCC-CHHHHHHHHHHHH
Q 026952 146 -----RDRTSEEDARNRINAQMPL----DIKRNNADIVINNTG-TLDDLNEQVRKVL 192 (230)
Q Consensus 146 -----R~~~~~~~~~~r~~~~~~~----~~~~~~ad~iI~n~~-~~~~v~~~i~~~l 192 (230)
|+..+.+.+..+.+..... .......+++|.|+. .++...+++.+++
T Consensus 131 d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 131 DETRRRDVETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 4346777777776543221 112344677777663 4888888888765
No 48
>PRK07429 phosphoribulokinase; Provisional
Probab=99.60 E-value=3e-15 Score=127.14 Aligned_cols=165 Identities=18% Similarity=0.149 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCC---CcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCCh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AND---VPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS 77 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g---~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (230)
.+|+|+|++||||||+++.|+ .++ ..++..|++... . ......+|...+.++.. +...+. .+.
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~--~------~~~r~~~g~~~l~p~~~-~~d~l~----~~l 75 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSY--D------RKQRKELGITALDPRAN-NLDIMY----EHL 75 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccC--C------HHHHHhcCCcccCccch-HHHHHH----HHH
Confidence 589999999999999999999 344 568888887421 0 11122334332222211 111111 112
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeee-eccccccccCCeEEEEEcCHHHHHHHHH----hhCCCCHH
Q 026952 78 SKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPL-LFEAKMDKWTKPIVVVWVDPDTQLQRLM----ARDRTSEE 152 (230)
Q Consensus 78 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~-~~e~~~~~~~d~vi~l~~~~~~~~~Rl~----~R~~~~~~ 152 (230)
+.+...+.+.+|.+..............+.+++|+||.. +++..+...+|++||+++|.+++..|.. +|+|.+.+
T Consensus 76 ~~L~~g~~I~~P~yd~~~g~~~~~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~e 155 (327)
T PRK07429 76 KALKTGQPILKPIYNHETGTFDPPEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYE 155 (327)
T ss_pred HHHHCCCceecceeecCCCCcCCcEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHH
Confidence 223333344455443322111000011235689999986 5666677789999999999999975544 44578899
Q ss_pred HHHHHHHhcCCcc-----cccccCCEEEeCCC
Q 026952 153 DARNRINAQMPLD-----IKRNNADIVINNTG 179 (230)
Q Consensus 153 ~~~~r~~~~~~~~-----~~~~~ad~iI~n~~ 179 (230)
++..+++++.+.. +....||+||++..
T Consensus 156 ei~~~i~~r~pd~~~yI~P~k~~ADiVI~~~p 187 (327)
T PRK07429 156 QVLAEIEAREPDFEAYIRPQRQWADVVIQFLP 187 (327)
T ss_pred HHHHHHHHhCccHhhhhcccccCCCEEEEcCC
Confidence 9999988776543 35788999998764
No 49
>PRK08233 hypothetical protein; Provisional
Probab=99.59 E-value=9.2e-15 Score=114.33 Aligned_cols=159 Identities=16% Similarity=0.284 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCC-CcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AND-VPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g-~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
++|+|+|+|||||||+|+.|+ +++ ..++..|.+...... ....+..+ ....++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~------~~~~~~~~-----~~~~~~-------------- 58 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCP------EDICKWID-----KGANYS-------------- 58 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCc------hhhhhhhh-----ccCChh--------------
Confidence 589999999999999999999 564 456666655321110 00000000 000000
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHH-hcCCcEEEEEeeeecc-ccccccCCeEEEEEcCHHHHHHHHHhhCC--CCHHHHH
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLW-IKGCKVIVLDVPLLFE-AKMDKWTKPIVVVWVDPDTQLQRLMARDR--TSEEDAR 155 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~-~~~~~~viie~~~~~e-~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~--~~~~~~~ 155 (230)
....+.+. +.+.... ..+.+++++|++.... ..+...+|.+||+++|++++.+|+.+|+. .+.+.+.
T Consensus 59 -----~~~~~~~~----~~l~~~~~~~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~ 129 (182)
T PRK08233 59 -----EWVLTPLI----KDIQELIAKSNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIH 129 (182)
T ss_pred -----hhhhHHHH----HHHHHHHcCCCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchh
Confidence 00001111 1111111 1123678889875433 34556689999999999999999887752 2222333
Q ss_pred HHHHhcC----Cc-----ccccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 156 NRINAQM----PL-----DIKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 156 ~r~~~~~----~~-----~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
+++.... +. ......++++|+++.+++++.+++.+.+..
T Consensus 130 ~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 130 NDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELYR 177 (182)
T ss_pred hHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence 3322211 11 112345788999999999999999998763
No 50
>PLN02348 phosphoribulokinase
Probab=99.59 E-value=3.6e-15 Score=127.83 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCC--------------------CcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCC
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AND--------------------VPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLP 60 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g--------------------~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 60 (230)
.+|+|+|+|||||||+|+.|+ .+| ..+|++|+++..-.. .....+...+++
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~--------~r~~~g~t~ldP 121 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRT--------GRKEKGVTALDP 121 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChh--------hHhhcCCccCCc
Confidence 589999999999999999999 443 247888988642100 001111111111
Q ss_pred CCccCHHHHHhhhcCChHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeec-cccccccCCeEEEEEcCHHHH
Q 026952 61 NGEVDRSKLGQIVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLF-EAKMDKWTKPIVVVWVDPDTQ 139 (230)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~-e~~~~~~~d~vi~l~~~~~~~ 139 (230)
...+-+.+.+.+ ..++.-..+..|.+.............++.+++|+||...+ ...++..+|++||+++|++++
T Consensus 122 -~a~dfDll~~~L----~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvr 196 (395)
T PLN02348 122 -RANNFDLMYEQV----KALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVK 196 (395)
T ss_pred -ccccHHHHHHHH----HHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHH
Confidence 122222222221 11111112333333221110000001134678999986543 445677899999999999998
Q ss_pred HHHHHhh----CCCCHHHHHHHHHhcCCc-----ccccccCCEEEeC
Q 026952 140 LQRLMAR----DRTSEEDARNRINAQMPL-----DIKRNNADIVINN 177 (230)
Q Consensus 140 ~~Rl~~R----~~~~~~~~~~r~~~~~~~-----~~~~~~ad~iI~n 177 (230)
+.|..+| +|.+.+++..+++.+.+. .+.+..||++|+-
T Consensus 197 l~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v 243 (395)
T PLN02348 197 FAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEV 243 (395)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEe
Confidence 6666555 478999999999877654 5678899998854
No 51
>PRK14527 adenylate kinase; Provisional
Probab=99.59 E-value=3.7e-14 Score=112.13 Aligned_cols=161 Identities=19% Similarity=0.179 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|+|.|+|||||||+|+.|+ ++|+.+++.+++.+.....+.+....+.+.+....+. .
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~-----p--------------- 66 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLV-----P--------------- 66 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCC-----c---------------
Confidence 579999999999999999999 7999999999988775544443333333222111100 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeee-e-ccc--------cccccCCeEEEEEcCHHHHHHHHHhhC---
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPL-L-FEA--------KMDKWTKPIVVVWVDPDTQLQRLMARD--- 147 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~-~-~e~--------~~~~~~d~vi~l~~~~~~~~~Rl~~R~--- 147 (230)
...+...+.+.+.. .....+|+||.. . .+. .....++.++++++|++++.+|+.+|.
T Consensus 67 -------~~~~~~l~~~~l~~---~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~ 136 (191)
T PRK14527 67 -------DELILALIRDELAG---MEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQE 136 (191)
T ss_pred -------HHHHHHHHHHHHhc---CCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccC
Confidence 00011111111111 111236788521 1 111 111246788999999999999999885
Q ss_pred ---CCCHHHHHHHHHhcCC----ccccccc-CC-EEEeCCCCHHHHHHHHHHHH
Q 026952 148 ---RTSEEDARNRINAQMP----LDIKRNN-AD-IVINNTGTLDDLNEQVRKVL 192 (230)
Q Consensus 148 ---~~~~~~~~~r~~~~~~----~~~~~~~-ad-~iI~n~~~~~~v~~~i~~~l 192 (230)
..+++.+.+|++.+.. ....+.. .- ..||.+++++++.++|.+.+
T Consensus 137 ~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 137 GRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 2457778888765432 2222222 22 46899999999999998765
No 52
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.59 E-value=3e-13 Score=109.60 Aligned_cols=190 Identities=13% Similarity=0.150 Sum_probs=102.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhc----CCch--HHHHHHH---HhCCcccCCCC----ccCHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLK----KGTG--GWKKVVA---AFGEDILLPNG----EVDRSK 68 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~----~~~~--~~~~l~~---~~~~~~~~~~~----~~~~~~ 68 (230)
+|+|+|++||||||+|+.|+ ++|+.+++++.++|.+.. .|-+ ....+.+ .+......... .+.-..
T Consensus 6 ~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (225)
T PRK00023 6 VIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNGED 85 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECCcc
Confidence 89999999999999999999 799999999998876431 1111 1111222 11111100000 000000
Q ss_pred HHhhhcCChHHHHHHH-hhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhC
Q 026952 69 LGQIVFSDSSKRQLLN-GLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARD 147 (230)
Q Consensus 69 l~~~~~~~~~~~~~l~-~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~ 147 (230)
+...+-+ ++--.... ....|.+.+.+........ ... .+|++|......-+ +..++.+|+++|.+.+.+|+.++.
T Consensus 86 i~~~lr~-~~i~~~~s~~a~~~~ir~~l~~~q~~ia-~~~-~~Vi~GR~~~~~vl-~~a~~~ifl~a~~e~R~~Rr~~~~ 161 (225)
T PRK00023 86 VTDEIRT-EEVGNAASKVAAIPEVREALVERQRAFA-REP-GLVMDGRDIGTVVF-PDAELKIFLTASAEERAERRYKEL 161 (225)
T ss_pred hHHhhCh-HHHHHHHHHHcCCHHHHHHHHHHHHHHh-hCC-CEEEEecChheEEe-CCCCEEEEEECCHHHHHHHHHHHH
Confidence 0000000 00000111 1123344444433333322 233 36888764333222 236889999999999988765542
Q ss_pred -----CCCHHHHHHHHHh----cC--CcccccccCC-EEEeCCC-CHHHHHHHHHHHHHHhh
Q 026952 148 -----RTSEEDARNRINA----QM--PLDIKRNNAD-IVINNTG-TLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 148 -----~~~~~~~~~r~~~----~~--~~~~~~~~ad-~iI~n~~-~~~~v~~~i~~~l~~~~ 196 (230)
+.+.+++.+.+.. .. ...+.....| ++|||+. +++++.+.|.+.++..+
T Consensus 162 ~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i~~~~ 223 (225)
T PRK00023 162 QAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEKILALVEEKL 223 (225)
T ss_pred HhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 3456555444422 11 1223333455 6889887 99999999999987543
No 53
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.59 E-value=3.7e-14 Score=113.79 Aligned_cols=161 Identities=20% Similarity=0.205 Sum_probs=99.3
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHHH
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQL 82 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (230)
|+|.|+|||||||+|+.|+ ++|+.+++++++.+.....+.+....+.+....... +.-..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~-----vp~~~-------------- 62 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGEL-----VPDEI-------------- 62 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCC-----CCHHH--------------
Confidence 7899999999999999999 699999999999887665554444444333211111 11000
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eec-cc-ccc---c-cCCeEEEEEcCHHHHHHHHHhhC--------
Q 026952 83 LNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLF-EA-KMD---K-WTKPIVVVWVDPDTQLQRLMARD-------- 147 (230)
Q Consensus 83 l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~-e~-~~~---~-~~d~vi~l~~~~~~~~~Rl~~R~-------- 147 (230)
+...+...+.... .....+|+||. -.. +. .+. . ..|.+|++++|.+++.+|+.+|.
T Consensus 63 --------~~~l~~~~i~~~~-~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~ 133 (210)
T TIGR01351 63 --------VNQLVKERLTQNQ-DNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRV 133 (210)
T ss_pred --------HHHHHHHHHhcCc-ccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCc
Confidence 1111122222110 11233688863 211 11 111 1 46899999999999999999873
Q ss_pred -------------------------CCCHHHHHHHHHhcCC----cccccccC-CE-EEeCCCCHHHHHHHHHHHH
Q 026952 148 -------------------------RTSEEDARNRINAQMP----LDIKRNNA-DI-VINNTGTLDDLNEQVRKVL 192 (230)
Q Consensus 148 -------------------------~~~~~~~~~r~~~~~~----~~~~~~~a-d~-iI~n~~~~~~v~~~i~~~l 192 (230)
..+++.+.+|++.+.. ....+... .+ .||++++++++.+.|.+.+
T Consensus 134 y~~~~~~p~~~~~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 134 YHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred cccccCCCccCCcCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 1357778888765432 22233222 23 5899999999999998865
No 54
>PRK13947 shikimate kinase; Provisional
Probab=99.59 E-value=2.1e-14 Score=111.33 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=88.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|+.|+|.|+|||||||+|+.|+ .+|+++++.|.+.+... +.+ ..++.+.+|...+
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g~~-~~~~~~~~ge~~~--------------------- 56 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--GMT-VAEIFEKDGEVRF--------------------- 56 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--CCc-HHHHHHHhChHHH---------------------
Confidence 7889999999999999999999 69999999998865542 111 1222222221100
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-e-ecccccc--ccCCeEEEEEcCHHHHHHHHHhhCCC---CHH
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-L-LFEAKMD--KWTKPIVVVWVDPDTQLQRLMARDRT---SEE 152 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~-~~e~~~~--~~~d~vi~l~~~~~~~~~Rl~~R~~~---~~~ 152 (230)
.. ....+.+.+ ......++..+. . +...... ...+.+||+++|++++.+|+..|.+. ..+
T Consensus 57 -~~--------~e~~~~~~l----~~~~~~vi~~g~g~vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~ 123 (171)
T PRK13947 57 -RS--------EEKLLVKKL----ARLKNLVIATGGGVVLNPENVVQLRKNGVVICLKARPEVILRRVGKKKSRPLLMVG 123 (171)
T ss_pred -HH--------HHHHHHHHH----hhcCCeEEECCCCCcCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCCCCCC
Confidence 00 000111111 112233332221 1 1111111 12357999999999999999876432 112
Q ss_pred HHHHHHHhcC-CcccccccCCEEEeCCC-CHHHHHHHHHH-HHH
Q 026952 153 DARNRINAQM-PLDIKRNNADIVINNTG-TLDDLNEQVRK-VLF 193 (230)
Q Consensus 153 ~~~~r~~~~~-~~~~~~~~ad~iI~n~~-~~~~v~~~i~~-~l~ 193 (230)
....++.... ...+.+..+|++|++++ +++++.++|.+ ++.
T Consensus 124 ~~~~~i~~~~~~r~~~y~~ad~~Idt~~~~~~~i~~~I~~~~~~ 167 (171)
T PRK13947 124 DPEERIKELLKEREPFYDFADYTIDTGDMTIDEVAEEIIKAYLK 167 (171)
T ss_pred ChHHHHHHHHHHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHHh
Confidence 2222322111 12234456899888654 89999999988 443
No 55
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.58 E-value=9.4e-15 Score=117.02 Aligned_cols=182 Identities=16% Similarity=0.191 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hC---CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCCh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AN---DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS 77 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~---g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (230)
.+|+|+|++||||||+++.|. .+ +..+++.|.++....... ..+..+. .+...+.++...+.+.+
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~l~~~l---- 75 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLE------MAERKKT-NFDHPDAFDNDLLYEHL---- 75 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCC------HHHhcCC-CCCCccHhHHHHHHHHH----
Confidence 379999999999999999999 33 466888888754321110 0111111 11112222222222211
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH-HHhcCCcEEEEEeeee-ccccccccCCeEEEEEcCHHHHHHHHHhhC----CCCH
Q 026952 78 SKRQLLNGLLAPYISLGIFMEVLK-LWIKGCKVIVLDVPLL-FEAKMDKWTKPIVVVWVDPDTQLQRLMARD----RTSE 151 (230)
Q Consensus 78 ~~~~~l~~~~~p~v~~~~~~~~~~-~~~~~~~~viie~~~~-~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~----~~~~ 151 (230)
+.+.....+..|.+.......... ....+..++|+||..+ ++..+...+|.+||+++|.++++.|+.+|+ |.+.
T Consensus 76 ~~l~~g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~ 155 (207)
T TIGR00235 76 KNLKNGSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSL 155 (207)
T ss_pred HHHHCCCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCH
Confidence 000000111122221110000000 0012456899997655 455566789999999999999999998885 4566
Q ss_pred HHHHHHHHhc-CC-----cccccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 152 EDARNRINAQ-MP-----LDIKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 152 ~~~~~r~~~~-~~-----~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
+.+..++... .+ ..+....||++|+|++.-+...+-+.+-++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~~ 204 (207)
T TIGR00235 156 DSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIKH 204 (207)
T ss_pred HHHHHHHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHHH
Confidence 6555554322 12 2456788999999888777766665555543
No 56
>PRK13946 shikimate kinase; Provisional
Probab=99.58 E-value=8.9e-14 Score=109.35 Aligned_cols=157 Identities=20% Similarity=0.224 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
+.|+++|++||||||+++.|+ ++|++++++|........ .+ ..++.+.+|...+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g--~~-~~e~~~~~ge~~~---------------------- 65 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAAR--MT-IAEIFAAYGEPEF---------------------- 65 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhC--CC-HHHHHHHHCHHHH----------------------
Confidence 579999999999999999999 689999999987655432 11 2233333322111
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee--eeccccc--cccCCeEEEEEcCHHHHHHHHHhhCCCC------
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP--LLFEAKM--DKWTKPIVVVWVDPDTQLQRLMARDRTS------ 150 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~--~~~e~~~--~~~~d~vi~l~~~~~~~~~Rl~~R~~~~------ 150 (230)
.. ....+...+ ....+.||..+. .+..... ....+++|||++|++++.+|+.+|.+.+
T Consensus 66 ~~--------~e~~~l~~l----~~~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~ 133 (184)
T PRK13946 66 RD--------LERRVIARL----LKGGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTAD 133 (184)
T ss_pred HH--------HHHHHHHHH----HhcCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCC
Confidence 00 001111111 122344555532 2222211 1124678999999999999999876431
Q ss_pred -HHHHHHHHHhcCCcccccccCCEEEeCCC-CHHHHHHHHHHHHHHhhCC
Q 026952 151 -EEDARNRINAQMPLDIKRNNADIVINNTG-TLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 151 -~~~~~~r~~~~~~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~~~~~ 198 (230)
.+.+...++. ..+.+..+|+++++++ +++++.+.|.+.++.....
T Consensus 134 ~~~~i~~~~~~---R~~~y~~~dl~i~~~~~~~~~~~~~i~~~i~~~~~~ 180 (184)
T PRK13946 134 PKETLARLMEE---RYPVYAEADLTVASRDVPKEVMADEVIEALAAYLEK 180 (184)
T ss_pred hHHHHHHHHHH---HHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence 2222322222 2233445898887655 8999999999988776554
No 57
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.58 E-value=2e-13 Score=127.60 Aligned_cols=199 Identities=16% Similarity=0.151 Sum_probs=116.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhh----cCCchH----------HHHHHHHhC---Ccc-cCCC
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVL----KKGTGG----------WKKVVAAFG---EDI-LLPN 61 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~----~~~~~~----------~~~l~~~~~---~~~-~~~~ 61 (230)
|++|+|+|+|||||||+|+.|+ ++|+.+++++.+++... +.+... ...+.+... ..+ .+++
T Consensus 1 ~~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (712)
T PRK09518 1 MIIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPD 80 (712)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCC
Confidence 7799999999999999999999 68999999999988743 111000 111111110 000 0000
Q ss_pred C-c--cCHHHHHhhhcCChHHHHHHHhh-hhHHHHHHHHHHHHHHHh-cC-------CcEEEEEeeeeccccccccCCeE
Q 026952 62 G-E--VDRSKLGQIVFSDSSKRQLLNGL-LAPYISLGIFMEVLKLWI-KG-------CKVIVLDVPLLFEAKMDKWTKPI 129 (230)
Q Consensus 62 ~-~--~~~~~l~~~~~~~~~~~~~l~~~-~~p~v~~~~~~~~~~~~~-~~-------~~~viie~~~~~e~~~~~~~d~v 129 (230)
+ . ++-..+...+ .+++.....+.+ ..|.+.+.+......... .+ ..-+|+||+.+...-+. ..|+.
T Consensus 81 ~~~i~~~~~~v~~~i-~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRdigtvv~p-~a~~K 158 (712)
T PRK09518 81 SPGVFADGEDISEEI-RSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRDITTVVAP-DAEVR 158 (712)
T ss_pred CcEEEECCeEchHhh-CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCccceEEec-CCCeE
Confidence 0 0 0000111111 111222222222 345566665555444321 22 12489998766544332 35899
Q ss_pred EEEEcCHHHHHHHHHhhCC-CCHHHHHH----HHHhcC-CcccccccCC--EEEeCCC-CHHHHHHHHHHHHHHhhCCCc
Q 026952 130 VVVWVDPDTQLQRLMARDR-TSEEDARN----RINAQM-PLDIKRNNAD--IVINNTG-TLDDLNEQVRKVLFEIKRPLN 200 (230)
Q Consensus 130 i~l~~~~~~~~~Rl~~R~~-~~~~~~~~----r~~~~~-~~~~~~~~ad--~iI~n~~-~~~~v~~~i~~~l~~~~~~~~ 200 (230)
+||+|++++|.+|+.++.. .+.+++.. |..... ...+ ...++ ++|||+. +++++.+.|.++++.......
T Consensus 159 ~~l~A~~~~Ra~Rr~~~~~~~~~~~~~~~~~~Rd~~d~R~~~p-l~~~~da~~idts~~~~~~v~~~i~~~i~~~~~~~~ 237 (712)
T PRK09518 159 ILLTAREEVRQARRSGQDRSETPGVVLEDVAARDEADSKVTSF-LSAADGVTTLDNSDLDFDETLDLLIGLVEDAIEEQE 237 (712)
T ss_pred EEEECCHHHHHHHHHHhhhcCCHHHHHHHHHHHhhhcccccCC-CCCCCCeEEEECCCCCHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999988765 55555444 433333 2223 33454 6889987 999999999999987776654
Q ss_pred hh
Q 026952 201 WT 202 (230)
Q Consensus 201 ~~ 202 (230)
..
T Consensus 238 ~~ 239 (712)
T PRK09518 238 YD 239 (712)
T ss_pred HH
Confidence 44
No 58
>PRK13948 shikimate kinase; Provisional
Probab=99.57 E-value=9.4e-14 Score=108.71 Aligned_cols=153 Identities=19% Similarity=0.251 Sum_probs=92.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
.|++.|.+||||||+++.|+ ++|..++++|.+..+... ....++.+.+|+..|+ +
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g---~si~~if~~~Ge~~fR---------------------~ 67 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG---KSIPEIFRHLGEAYFR---------------------R 67 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh---CCHHHHHHHhCHHHHH---------------------H
Confidence 69999999999999999999 699999999988766542 2233444444432221 0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEE--eeeeccccc--cccCCeEEEEEcCHHHHHHHHHhhCC--C----CH
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLD--VPLLFEAKM--DKWTKPIVVVWVDPDTQLQRLMARDR--T----SE 151 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie--~~~~~e~~~--~~~~d~vi~l~~~~~~~~~Rl~~R~~--~----~~ 151 (230)
... .+...+. .. .+.||.- +..+.+... -.....+|||++|++++.+|+..+.. . +.
T Consensus 68 ~E~---------~~l~~l~---~~-~~~VIa~GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~ 134 (182)
T PRK13948 68 CEA---------EVVRRLT---RL-DYAVISLGGGTFMHEENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPL 134 (182)
T ss_pred HHH---------HHHHHHH---hc-CCeEEECCCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcCCCCCCCCCCChH
Confidence 000 1111111 11 2333333 223322221 11235789999999999999954321 1 12
Q ss_pred HHHHHHHHhcCCcccccccCCEEEeCCC-CHHHHHHHHHHHHHHh
Q 026952 152 EDARNRINAQMPLDIKRNNADIVINNTG-TLDDLNEQVRKVLFEI 195 (230)
Q Consensus 152 ~~~~~r~~~~~~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~~ 195 (230)
+.+...+++. .+.+..||++|++++ +++++.++|.+.+...
T Consensus 135 ~~l~~l~~~R---~~~Y~~a~~~i~t~~~~~~ei~~~i~~~l~~~ 176 (182)
T PRK13948 135 GRIRTLLNER---EPVYRQATIHVSTDGRRSEEVVEEIVEKLWAW 176 (182)
T ss_pred HHHHHHHHHH---HHHHHhCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 3334333322 333456999999876 8999999988888653
No 59
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.57 E-value=2.2e-14 Score=112.98 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=53.3
Q ss_pred CeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCC-EEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 127 KPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNAD-IVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 127 d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad-~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
-.+||+++|.+++.+|+..|++.+.+++..|++++. .+..+| ++|+|+++++++.++|.+++...-
T Consensus 112 ~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~~----~~~~ad~~vi~~~~s~ee~~~~i~~~l~~~~ 178 (186)
T PRK10078 112 LLPVCLQVSPEILRQRLENRGRENASEINARLARAA----RYQPQDCHTLNNDGSLRQSVDTLLTLLHLSQ 178 (186)
T ss_pred EEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHhh----hhccCCEEEEeCCCCHHHHHHHHHHHHhhcC
Confidence 357899999999999999998778888888886542 233467 678988899999999999887543
No 60
>PLN02459 probable adenylate kinase
Probab=99.57 E-value=6.1e-14 Score=114.81 Aligned_cols=165 Identities=13% Similarity=0.143 Sum_probs=105.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
.|+|.|+|||||||+|+.|+ .+|+.+++++++.+.....+++....+.+.+.. |.+-...
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~------G~lVPde------------- 91 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQ------GKLVPDE------------- 91 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHc------CCccCHH-------------
Confidence 47778999999999999999 699999999999888766666666666555422 2211111
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeec-cc-ccc--ccCCeEEEEEcCHHHHHHHHHhhC---------
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLF-EA-KMD--KWTKPIVVVWVDPDTQLQRLMARD--------- 147 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~-e~-~~~--~~~d~vi~l~~~~~~~~~Rl~~R~--------- 147 (230)
++...+ .+++......+...+++|| |-.. +. .+. ...|.+|+|++|.+++++|+..|.
T Consensus 92 ----iv~~ll----~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Y 163 (261)
T PLN02459 92 ----IIFSLL----SKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNF 163 (261)
T ss_pred ----HHHHHH----HHHHhcccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccc
Confidence 111111 1222211111234468886 3211 11 111 135889999999999999998873
Q ss_pred -----------------------------------CCCHHHHHHHHHhcC----CcccccccCC--EEEeCCCCHHHHHH
Q 026952 148 -----------------------------------RTSEEDARNRINAQM----PLDIKRNNAD--IVINNTGTLDDLNE 186 (230)
Q Consensus 148 -----------------------------------~~~~~~~~~r~~~~~----~~~~~~~~ad--~iI~n~~~~~~v~~ 186 (230)
..+++.+.+|++.+. ++..++.... +.|+.+++++++.+
T Consensus 164 n~~~~~~~~~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~ 243 (261)
T PLN02459 164 NVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWP 243 (261)
T ss_pred cccccccccccccccccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHH
Confidence 134677888876443 3333333333 35899999999999
Q ss_pred HHHHHHHH
Q 026952 187 QVRKVLFE 194 (230)
Q Consensus 187 ~i~~~l~~ 194 (230)
+|.+.+..
T Consensus 244 ~i~~~l~~ 251 (261)
T PLN02459 244 RLLQALNL 251 (261)
T ss_pred HHHHHhch
Confidence 99998863
No 61
>PRK03839 putative kinase; Provisional
Probab=99.57 E-value=1.1e-13 Score=108.46 Aligned_cols=155 Identities=24% Similarity=0.288 Sum_probs=91.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
+|+|+|+|||||||+|+.|+ ++|++++++|++.++.. .+. .+...+... ..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-------------~~~-~~~~~~~~~--------------~~ 53 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-------------IGE-EKDDEMEID--------------FD 53 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-------------Ccc-cCChhhhcC--------------HH
Confidence 69999999999999999999 68999999998865310 000 010010000 00
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhc
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQ 161 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~ 161 (230)
.+...+... ..+. .+++++.... + ...|.++|++++++++.+|+.+|.. ...........+
T Consensus 54 ------------~l~~~~~~~-~~~~-~vIidG~~~~---l-~~~~~vi~L~~~~~~~~~Rl~~R~~-~~~~~~~~~~~~ 114 (180)
T PRK03839 54 ------------KLAYFIEEE-FKEK-NVVLDGHLSH---L-LPVDYVIVLRAHPKIIKERLKERGY-SKKKILENVEAE 114 (180)
T ss_pred ------------HHHHHHHHh-ccCC-CEEEEecccc---c-cCCCEEEEEECCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 011111111 1233 3677874321 1 2368899999999999999998853 222222111111
Q ss_pred CC---c-cccc-ccCCEEEeCCC-CHHHHHHHHHHHHHHhhCCC----chhhh
Q 026952 162 MP---L-DIKR-NNADIVINNTG-TLDDLNEQVRKVLFEIKRPL----NWTEF 204 (230)
Q Consensus 162 ~~---~-~~~~-~~ad~iI~n~~-~~~~v~~~i~~~l~~~~~~~----~~~~~ 204 (230)
.. . +... ....++||+++ +++++.++|.+.++.-..+. +|.++
T Consensus 115 ~~~~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~~~~~~~~~~~~~~ 167 (180)
T PRK03839 115 LVDVCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKSGKKRKVGIVDWSEV 167 (180)
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcCCCCCCCeecchhh
Confidence 10 0 1111 12336788864 99999999999998755554 48755
No 62
>PRK06547 hypothetical protein; Provisional
Probab=99.55 E-value=2.4e-14 Score=111.19 Aligned_cols=147 Identities=15% Similarity=0.062 Sum_probs=85.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|++|+|+|++||||||+|+.|+ .++..+++.|+++....... ...+.+.+.+-.. ...+... +
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~-~~~~~l~~~~l~~--g~~~~~~--------y----- 78 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLA-AASEHVAEAVLDE--GRPGRWR--------W----- 78 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCC-hHHHHHHHHHHhC--CCCceec--------C-----
Confidence 5789999999999999999999 68999999999875422111 0111122221100 0000000 0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCC-----eEEEEEcCHHHHHHHHHhhCCCCHHHH
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTK-----PIVVVWVDPDTQLQRLMARDRTSEEDA 154 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d-----~vi~l~~~~~~~~~Rl~~R~~~~~~~~ 154 (230)
.+....... .. .....+++|+||............| ++||+++|.+++.+|+.+|++. ....
T Consensus 79 -d~~~~~~~~---------~~--~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-~~~~ 145 (172)
T PRK06547 79 -DWANNRPGD---------WV--SVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD-YAPH 145 (172)
T ss_pred -CCCCCCCCC---------cE--EeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-hhHH
Confidence 000000000 00 0123457889986555444555567 8999999999999999999875 3333
Q ss_pred HHHHH----hcCCcccccccCCEEEe
Q 026952 155 RNRIN----AQMPLDIKRNNADIVIN 176 (230)
Q Consensus 155 ~~r~~----~~~~~~~~~~~ad~iI~ 176 (230)
+.++. .++........||+++.
T Consensus 146 ~~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 146 WEMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHHHHHHHhcCCChhccEEEec
Confidence 33432 22344556677887653
No 63
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.55 E-value=9.5e-14 Score=107.76 Aligned_cols=153 Identities=15% Similarity=0.126 Sum_probs=89.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|+.|+|+|++||||||+++.|+ ++|+++++.|.+........ ...+.+.+|...+.
T Consensus 2 ~~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~---~~~~~~~~g~~~~~-------------------- 58 (171)
T PRK03731 2 TQPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMT---VAEIVEREGWAGFR-------------------- 58 (171)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCC---HHHHHHHHCHHHHH--------------------
Confidence 4679999999999999999999 68999999999876543211 12222222211110
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeecccc---ccccCCeEEEEEcCHHHHHHHHHhhCC-------
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLFEAK---MDKWTKPIVVVWVDPDTQLQRLMARDR------- 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~e~~---~~~~~d~vi~l~~~~~~~~~Rl~~R~~------- 148 (230)
.... .+.+.... ...++..+ ..+.... +....+.++|+++|++++.+|+..|..
T Consensus 59 -~~e~-------------~~~~~~~~-~~~vi~~ggg~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~ 123 (171)
T PRK03731 59 -ARES-------------AALEAVTA-PSTVIATGGGIILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTL 123 (171)
T ss_pred -HHHH-------------HHHHHhcC-CCeEEECCCCccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcC
Confidence 0000 00011112 22333332 2222221 112357899999999999999987632
Q ss_pred --CC-HHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHH
Q 026952 149 --TS-EEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLF 193 (230)
Q Consensus 149 --~~-~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~ 193 (230)
.. .++....+++..+. +...++++||++.+++++.++|.+.++
T Consensus 124 ~~~~~~~~~~~~~~~r~~~--y~~~a~~~Id~~~~~e~v~~~i~~~l~ 169 (171)
T PRK03731 124 TGKPISEEVAEVLAEREAL--YREVAHHIIDATQPPSQVVSEILSALA 169 (171)
T ss_pred CCCChHHHHHHHHHHHHHH--HHHhCCEEEcCCCCHHHHHHHHHHHHh
Confidence 11 23333333322121 223467899999999999999988775
No 64
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.55 E-value=3.2e-14 Score=105.16 Aligned_cols=117 Identities=18% Similarity=0.299 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
+.|.|+|.||+||||+|..|+ ..|+.+|...++.++- ..|...-+.+..- ++++...+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn-----~l~~gyDE~y~c~----------------i~DEdkv~ 66 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKEN-----NLYEGYDEEYKCH----------------ILDEDKVL 66 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhh-----cchhcccccccCc----------------cccHHHHH
Confidence 468999999999999999999 6899999999888762 1122111221111 11222222
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEE--eeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHH
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLD--VPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRI 158 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie--~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~ 158 (230)
+.++.. + .+|+ .|+| +..+|.. +++|+++.|.||.+++.+|+..| |++++.+...+
T Consensus 67 D~Le~~----m------------~~Gg--~IVDyHgCd~Fpe---rwfdlVvVLr~~~s~LY~RL~sR-gY~e~Ki~eNi 124 (176)
T KOG3347|consen 67 DELEPL----M------------IEGG--NIVDYHGCDFFPE---RWFDLVVVLRTPNSVLYDRLKSR-GYSEKKIKENI 124 (176)
T ss_pred HHHHHH----H------------hcCC--cEEeecccCccch---hheeEEEEEecCchHHHHHHHHc-CCCHHHHhhhc
Confidence 222211 1 1333 4777 5566654 45899999999999999999988 78888877766
Q ss_pred Hhc
Q 026952 159 NAQ 161 (230)
Q Consensus 159 ~~~ 161 (230)
+..
T Consensus 125 ecE 127 (176)
T KOG3347|consen 125 ECE 127 (176)
T ss_pred chH
Confidence 543
No 65
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.54 E-value=5.9e-13 Score=123.41 Aligned_cols=188 Identities=13% Similarity=0.096 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhh----cCCch--HHHHHHH---HhCCcccCCCC-ccCHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVL----KKGTG--GWKKVVA---AFGEDILLPNG-EVDRSKLG 70 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~----~~~~~--~~~~l~~---~~~~~~~~~~~-~~~~~~l~ 70 (230)
++|+|.||+||||||+++.|+ ++|+.+++++.+++... +.+-+ ....+.+ .+...+ ..+. .++-+.+.
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 521 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRF-EGDRIWLGGEDVT 521 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeee-cCCeEEECCeEch
Confidence 479999999999999999999 79999999999998762 11110 0111111 111111 0000 01111111
Q ss_pred hhhcCChHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHh---h
Q 026952 71 QIVFSDSSKRQLLNGL-LAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMA---R 146 (230)
Q Consensus 71 ~~~~~~~~~~~~l~~~-~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~---R 146 (230)
..+ .+++--.....+ ..|.+.+.+....++.. +.. -+|+||+.+...-+. ..|+.|||++++++|.+|+.+ +
T Consensus 522 ~~i-~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~-~~~-~~v~eGRdigtvv~p-~a~~kifl~a~~~~Ra~Rr~~~~~~ 597 (661)
T PRK11860 522 DAI-RTEAAGMGASRVSALPAVRAALLALQRSFR-RLP-GLVADGRDMGTVIFP-DAALKVFLTASAEARAERRYKQLIS 597 (661)
T ss_pred hhh-CcHHHHHHHHHHhCCHHHHHHHHHHHHHHh-hCC-CEEEECCCCccEECC-CCCeEEEEECChhHHHHHHHHHHHh
Confidence 111 111111222222 46677776666555543 223 379998866544332 368999999999999998865 3
Q ss_pred CC--CCHHHHHH----HHHhcC--CcccccccCC-EEEeCCC-CHHHHHHHHHHHHHH
Q 026952 147 DR--TSEEDARN----RINAQM--PLDIKRNNAD-IVINNTG-TLDDLNEQVRKVLFE 194 (230)
Q Consensus 147 ~~--~~~~~~~~----r~~~~~--~~~~~~~~ad-~iI~n~~-~~~~v~~~i~~~l~~ 194 (230)
.| .+.+++.. |..... ...+.....| ++|||+. +++++.+.|.++++.
T Consensus 598 ~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~ 655 (661)
T PRK11860 598 KGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQVLDWWQE 655 (661)
T ss_pred CCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence 34 35554443 433332 2344444445 5789988 999999999998864
No 66
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.53 E-value=5.1e-13 Score=100.69 Aligned_cols=134 Identities=20% Similarity=0.212 Sum_probs=79.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
+|+|+|++||||||+|+.|+ ++|+++++.|.+..+.. ....+. .. ..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~-------~~~~~~----~~------~~--------------- 48 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV-------GKLASE----VA------AI--------------- 48 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH-------HHHHHH----hc------cc---------------
Confidence 58999999999999999999 68999999985532211 000000 00 00
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHh-----hCCCCHHHHHH
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMA-----RDRTSEEDARN 156 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~-----R~~~~~~~~~~ 156 (230)
+.+...+....... ..+ +.+|+|+...... ....+|.+||+++|++++.+|+.+ |.+.+.+++.+
T Consensus 49 -------~~i~~~l~~~~~~~-~~~-~~~Vidg~~~~~~-~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~ 118 (147)
T cd02020 49 -------PEVRKALDERQREL-AKK-PGIVLEGRDIGTV-VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILA 118 (147)
T ss_pred -------HhHHHHHHHHHHHH-hhC-CCEEEEeeeeeeE-EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 00111111111111 122 3367787653221 123478999999999999999998 56788888877
Q ss_pred HHHhcC-Cc------ccccccCCEEEeCC
Q 026952 157 RINAQM-PL------DIKRNNADIVINNT 178 (230)
Q Consensus 157 r~~~~~-~~------~~~~~~ad~iI~n~ 178 (230)
++...- .. .......|++||++
T Consensus 119 ~~~~~d~~~~~~~~~~~~~~~~dl~i~~~ 147 (147)
T cd02020 119 EIIERDERDSTRYVAPLKLAEDAIVIDTS 147 (147)
T ss_pred HHHHHHHHhhhcccccccCCCCcEEEeCc
Confidence 765331 11 11224456788764
No 67
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.53 E-value=4.6e-13 Score=104.48 Aligned_cols=159 Identities=18% Similarity=0.242 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|.|.|.|+|||||||+|+.|+ ++|++++|++++.+.......+...++.......-+.++
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d------------------- 61 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPD------------------- 61 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccch-------------------
Confidence 468899999999999999999 799999999999988766556555555543211111111
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEE-eeeec------cccc---cccCCeEEEEEcCHHHHHHHHHhhC---
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLD-VPLLF------EAKM---DKWTKPIVVVWVDPDTQLQRLMARD--- 147 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie-~~~~~------e~~~---~~~~d~vi~l~~~~~~~~~Rl~~R~--- 147 (230)
..+...+.+++.... ... .+|.+ .|-.. +..+ ....|.++.++.+.+....|+..|.
T Consensus 62 --------~i~~~~v~~rl~~~d-~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~ 131 (178)
T COG0563 62 --------EIVNGLVKERLDEAD-CKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVRE 131 (178)
T ss_pred --------HHHHHHHHHHHHhhc-ccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccc
Confidence 111122223333221 112 34555 33211 1111 1346889999999999999999884
Q ss_pred CCCHHHHHHHHHhcC----CcccccccCCEEEeCCCCHHHHHHHHHHHH
Q 026952 148 RTSEEDARNRINAQM----PLDIKRNNADIVINNTGTLDDLNEQVRKVL 192 (230)
Q Consensus 148 ~~~~~~~~~r~~~~~----~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l 192 (230)
..+++.+.+|...+. +...+++ +.||+.++++++.+.+.+.+
T Consensus 132 dd~~~~~~~R~~~y~~~~~pli~~y~---~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 132 DDNEETVKKRLKVYHEQTAPLIEYYS---VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred cCCHHHHHHHHHHHHhcccchhhhhe---eeccCCCCHHHHHHHHHHhh
Confidence 367888888876443 2333333 67899999999999988754
No 68
>PRK14530 adenylate kinase; Provisional
Probab=99.53 E-value=2.6e-13 Score=109.31 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCC----chHHHHHHHHhCCcccCCCCccCHHHHHhhhcCCh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKG----TGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS 77 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (230)
.|+|.|+|||||||+|+.|+ .+|+.+++++++.+...... ...+....+.+. .|.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~------~g~~------------- 65 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMD------AGEL------------- 65 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHH------cCCC-------------
Confidence 69999999999999999999 79999999999987644110 000000110000 0000
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccc---ccc--ccCCeEEEEEcCHHHHHHHHHhhC-----
Q 026952 78 SKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEA---KMD--KWTKPIVVVWVDPDTQLQRLMARD----- 147 (230)
Q Consensus 78 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~---~~~--~~~d~vi~l~~~~~~~~~Rl~~R~----- 147 (230)
+...+...+.. ....... .+|+||...... .+. ...|.+|+|++|.+++.+|+.+|.
T Consensus 66 ---------~~d~~~~~~l~---~~l~~~~-~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~ 132 (215)
T PRK14530 66 ---------VPDAVVNEIVE---EALSDAD-GFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDC 132 (215)
T ss_pred ---------CCHHHHHHHHH---HHHhcCC-CEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCccc
Confidence 00000011111 1111222 357776321111 111 236899999999999999998763
Q ss_pred ----------------------------CCCHHHHHHHHHhcCC----ccccccc-CC-EEEeCCCCHHHHHHHHHHHHH
Q 026952 148 ----------------------------RTSEEDARNRINAQMP----LDIKRNN-AD-IVINNTGTLDDLNEQVRKVLF 193 (230)
Q Consensus 148 ----------------------------~~~~~~~~~r~~~~~~----~~~~~~~-ad-~iI~n~~~~~~v~~~i~~~l~ 193 (230)
..+++.+.+|++.+.. ....+.. .. ..||++++++++.++|...+.
T Consensus 133 g~~~~~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 212 (215)
T PRK14530 133 GANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAID 212 (215)
T ss_pred CCccccCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHh
Confidence 1356778888765432 2222222 22 368999999999999998876
Q ss_pred H
Q 026952 194 E 194 (230)
Q Consensus 194 ~ 194 (230)
.
T Consensus 213 ~ 213 (215)
T PRK14530 213 D 213 (215)
T ss_pred c
Confidence 3
No 69
>PRK14526 adenylate kinase; Provisional
Probab=99.53 E-value=3e-13 Score=108.42 Aligned_cols=163 Identities=17% Similarity=0.244 Sum_probs=100.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
.|+|.|+|||||||+|+.|+ .+|+.+++++++.++....+.+....+.+.+....+.++ .
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd------~------------- 62 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPD------S------------- 62 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCCh------H-------------
Confidence 47799999999999999999 799999999999887666555555544444322111111 0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee--eeccc-ccccc--CCeEEEEEcCHHHHHHHHHhhC---------
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP--LLFEA-KMDKW--TKPIVVVWVDPDTQLQRLMARD--------- 147 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~--~~~e~-~~~~~--~d~vi~l~~~~~~~~~Rl~~R~--------- 147 (230)
+.. ..+.+.+... .....+|+||. ...+. .+... .+.++++++|++++.+|+..|.
T Consensus 63 ----~~~----~lv~~~l~~~--~~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y 132 (211)
T PRK14526 63 ----ITI----KIVEDKINTI--KNNDNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIF 132 (211)
T ss_pred ----HHH----HHHHHHHhcc--cccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCcc
Confidence 111 1111222211 11223567863 11111 12111 1357789999999999998763
Q ss_pred ------------------------CCCHHHHHHHHHhcC----CcccccccCC--EEEeCCCCHHHHHHHHHHHHHH
Q 026952 148 ------------------------RTSEEDARNRINAQM----PLDIKRNNAD--IVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 148 ------------------------~~~~~~~~~r~~~~~----~~~~~~~~ad--~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
.++++.+.+|++.+. +...++.... ..||++++++++.++|.+.+..
T Consensus 133 ~~~~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 133 NIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred ccccCCCCccCcCCCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 245788888886543 3333333222 3589999999999999998763
No 70
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.53 E-value=4.2e-14 Score=114.99 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=59.1
Q ss_pred CCcEEEEEeeeeccc-----cccccCCeEEEEEcCHHHHHHHHHhh---CCCCHHHHHHHHHh-cCC----cccccccCC
Q 026952 106 GCKVIVLDVPLLFEA-----KMDKWTKPIVVVWVDPDTQLQRLMAR---DRTSEEDARNRINA-QMP----LDIKRNNAD 172 (230)
Q Consensus 106 ~~~~viie~~~~~e~-----~~~~~~d~vi~l~~~~~~~~~Rl~~R---~~~~~~~~~~r~~~-~~~----~~~~~~~ad 172 (230)
...++++||..+... .+...+|.+||+++|.+++.+|+.+| .|.+.+++..++.. +++ ..+....||
T Consensus 136 ~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad 215 (229)
T PRK09270 136 TARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPAD 215 (229)
T ss_pred CCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCCCCC
Confidence 356889998655421 23456899999999999999999999 57899999999975 455 345778899
Q ss_pred EEEeCCCC
Q 026952 173 IVINNTGT 180 (230)
Q Consensus 173 ~iI~n~~~ 180 (230)
+||+|+++
T Consensus 216 ~vI~n~~~ 223 (229)
T PRK09270 216 LVLEMTAT 223 (229)
T ss_pred EEEEecCC
Confidence 99999875
No 71
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.52 E-value=9e-13 Score=102.18 Aligned_cols=155 Identities=17% Similarity=0.201 Sum_probs=87.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
++.|+|+|+|||||||+|+.|+ .+|+.+++.|.+........ ...+.+..|.. .+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~---~~~~~~~~g~~-----------~~---------- 59 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKS---IPEIFEEEGEA-----------AF---------- 59 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCC---HHHHHHHHCHH-----------HH----------
Confidence 3589999999999999999999 68999999998876543211 11111111110 00
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeecccccc---ccCCeEEEEEcCHHHHHHHHHhhCCCC-----
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLFEAKMD---KWTKPIVVVWVDPDTQLQRLMARDRTS----- 150 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~e~~~~---~~~d~vi~l~~~~~~~~~Rl~~R~~~~----- 150 (230)
.+. ...-+.... ...+.++..+ ......... +....+||+++|++.+.+|+.+|.+.+
T Consensus 60 ~~~------------~~~~~~~l~-~~~~~vi~~g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~ 126 (175)
T PRK00131 60 REL------------EEEVLAELL-ARHNLVISTGGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRNRPLLQTN 126 (175)
T ss_pred HHH------------HHHHHHHHH-hcCCCEEEeCCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCcCCCC
Confidence 000 000011111 1223334433 222221111 123578999999999999998765311
Q ss_pred --HHHHHHHHHhcCCcccccccCCEEEeCCC-CHHHHHHHHHHHHHH
Q 026952 151 --EEDARNRINAQMPLDIKRNNADIVINNTG-TLDDLNEQVRKVLFE 194 (230)
Q Consensus 151 --~~~~~~r~~~~~~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~ 194 (230)
.+.+...+.... ......+|++|++++ +++++.+.|.+.++.
T Consensus 127 ~~~~~~~~~~~~~~--~~~~~~~dl~idt~~~~~~e~~~~I~~~v~~ 171 (175)
T PRK00131 127 DPKEKLRDLYEERD--PLYEEVADITVETDGRSPEEVVNEILEKLEA 171 (175)
T ss_pred ChHHHHHHHHHHHH--HHHHhhcCeEEeCCCCCHHHHHHHHHHHHHh
Confidence 122222222211 112345899999765 899999999988864
No 72
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.52 E-value=2.9e-13 Score=109.71 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=73.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|+.|+|.|+|||||||+|+.|+ ++|+.++++|++.++....+++....+.+........ .-+
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lv-----pd~------------ 68 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLV-----PDN------------ 68 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcC-----CHH------------
Confidence 3459999999999999999999 6899999999999887655555555554433221110 100
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-e-ecccc-cc--ccCCeEEEEEcCHHHHHHHHHhhC
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-L-LFEAK-MD--KWTKPIVVVWVDPDTQLQRLMARD 147 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~-~~e~~-~~--~~~d~vi~l~~~~~~~~~Rl~~R~ 147 (230)
++ ...+.+++..........+++||. - ..+.. +. ...+.++++++|.+++++|+..|.
T Consensus 69 ------iv----~~lv~~~l~~~~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 69 ------LV----IAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred ------HH----HHHHHHHHHhhccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 11 111112222210112234688863 1 11111 11 246889999999999999998773
No 73
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.51 E-value=3.4e-14 Score=114.71 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=87.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hC-------CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhc
Q 026952 3 IVGLTGGISSGKSTVSNLFK-AN-------DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVF 74 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~-------g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (230)
+|+|+|++||||||+|+.|+ .+ .+.++++|+++...... ... ..+.. ....+.++...+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~-----~~~-~~~~~--~g~p~~~d~~~l~~~L- 71 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKEL-----IER-GLMDR--KGFPESYDMEALLKFL- 71 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHH-----HHh-hhhhc--CCCcccCCHHHHHHHH-
Confidence 58999999999999999998 32 24578899986432110 000 00000 0011233433332221
Q ss_pred CChHHHHH-HHhhhhHHHHHHHHHHHHHHH--hcCCcEEEEEeeeeccc-c-----ccccCCeEEEEEcCHHHHHHHHHh
Q 026952 75 SDSSKRQL-LNGLLAPYISLGIFMEVLKLW--IKGCKVIVLDVPLLFEA-K-----MDKWTKPIVVVWVDPDTQLQRLMA 145 (230)
Q Consensus 75 ~~~~~~~~-l~~~~~p~v~~~~~~~~~~~~--~~~~~~viie~~~~~e~-~-----~~~~~d~vi~l~~~~~~~~~Rl~~ 145 (230)
..+.. -..+..|.+............ ..+.+++|+||..++.. . +...+|+.||+++|.+++.+|+.+
T Consensus 72 ---~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~ 148 (220)
T cd02025 72 ---KDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIK 148 (220)
T ss_pred ---HHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHH
Confidence 00010 011222333222111111000 13456899999755533 2 567789999999999997666655
Q ss_pred h-------------------CCCCHHHHHHHHHhcC-----C-----cccccccCCEEEeCC
Q 026952 146 R-------------------DRTSEEDARNRINAQM-----P-----LDIKRNNADIVINNT 178 (230)
Q Consensus 146 R-------------------~~~~~~~~~~r~~~~~-----~-----~~~~~~~ad~iI~n~ 178 (230)
| .|.+.+++..+...++ + ..+.+..||++|..+
T Consensus 149 R~~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~ 210 (220)
T cd02025 149 RFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKG 210 (220)
T ss_pred HHHHHHHHHHhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeC
Confidence 4 2345556666655421 1 244568899988544
No 74
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.50 E-value=6e-13 Score=103.53 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
+.|+|.|++||||||+++.|+ .+|+.++++|......... ....+.+.+|...|.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~---~i~~~~~~~g~~~fr--------------------- 60 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA---DIGWVFDVEGEEGFR--------------------- 60 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCc---CHhHHHHHhCHHHHH---------------------
Confidence 469999999999999999999 6899999999865443311 112222222221110
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeec-cc--cccccCCeEEEEEcCHHHHHHHHHhhCCC------C
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLF-EA--KMDKWTKPIVVVWVDPDTQLQRLMARDRT------S 150 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~-e~--~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~------~ 150 (230)
.. + ..+...+. ....+++.-+ -.+. +. .+-...+.+|||++|++++.+|+..+... .
T Consensus 61 ~~-e--------~~~l~~l~----~~~~~vi~~ggg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~ 127 (172)
T PRK05057 61 DR-E--------EKVINELT----EKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDD 127 (172)
T ss_pred HH-H--------HHHHHHHH----hCCCEEEEcCCchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCC
Confidence 00 0 00111111 1223333332 2222 22 11223578999999999999999765321 1
Q ss_pred -HHHHHHHHHhcCCccccc-ccCCEEEeCCC-CHHHHHHHHHHHHH
Q 026952 151 -EEDARNRINAQMPLDIKR-NNADIVINNTG-TLDDLNEQVRKVLF 193 (230)
Q Consensus 151 -~~~~~~r~~~~~~~~~~~-~~ad~iI~n~~-~~~~v~~~i~~~l~ 193 (230)
.+.+...++.. .+.+ +.||++||+++ +++++.++|.+.++
T Consensus 128 ~~~~~~~l~~~R---~~~Y~~~Ad~~idt~~~s~~ei~~~i~~~l~ 170 (172)
T PRK05057 128 PREVLEALANER---NPLYEEIADVTIRTDDQSAKVVANQIIHMLE 170 (172)
T ss_pred HHHHHHHHHHHH---HHHHHhhCCEEEECCCCCHHHHHHHHHHHHh
Confidence 22222222222 3333 44999999876 89999999888764
No 75
>PRK06762 hypothetical protein; Provisional
Probab=99.50 E-value=1.3e-12 Score=100.86 Aligned_cols=145 Identities=17% Similarity=0.241 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hC--CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AN--DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSS 78 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~--g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (230)
++|+|+|+|||||||+|+.|+ ++ ++.+++.|.+.+.+... . ...+......+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~-------------~---~~~~~~~~~~~--------- 57 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRV-------------K---DGPGNLSIDLI--------- 57 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccc-------------c---CCCCCcCHHHH---------
Confidence 589999999999999999999 45 56678888776543210 0 00111111000
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecc---ccc---ccc---CCeEEEEEcCHHHHHHHHHhhCC-
Q 026952 79 KRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFE---AKM---DKW---TKPIVVVWVDPDTQLQRLMARDR- 148 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e---~~~---~~~---~d~vi~l~~~~~~~~~Rl~~R~~- 148 (230)
.. ..+.....+..+++|+..... ..+ ... ....+|+++|++++.+|..+|..
T Consensus 58 -----~~-------------~~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~ 119 (166)
T PRK06762 58 -----EQ-------------LVRYGLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKS 119 (166)
T ss_pred -----HH-------------HHHHHHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccccc
Confidence 00 000011234567777543211 111 111 23689999999999999999964
Q ss_pred --CCHHHHHHHHHhcCCcccccccCCEEEeCC-CCHHHHHHHHHHHHH
Q 026952 149 --TSEEDARNRINAQMPLDIKRNNADIVINNT-GTLDDLNEQVRKVLF 193 (230)
Q Consensus 149 --~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~-~~~~~v~~~i~~~l~ 193 (230)
.+++.+..+++..... ..++.+++++ .+++++.++|.+.+.
T Consensus 120 ~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 120 HEFGEDDMRRWWNPHDTL----GVIGETIFTDNLSLKDIFDAILTDIG 163 (166)
T ss_pred ccCCHHHHHHHHhhcCCc----CCCCeEEecCCCCHHHHHHHHHHHhc
Confidence 4567777776543222 2256666554 499999999988664
No 76
>PRK00625 shikimate kinase; Provisional
Probab=99.49 E-value=4.2e-13 Score=104.29 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVL 39 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~ 39 (230)
+.|+|+|+|||||||+++.|+ ++|++++++|.+.++..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~ 39 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY 39 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh
Confidence 359999999999999999999 68999999999877543
No 77
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.49 E-value=8.6e-13 Score=111.84 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
..|+|+|++||||||+++.|+ ++|++++++|....... +....++.+.+|...|.
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~---G~~i~ei~~~~G~~~fr--------------------- 189 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA---GLSVSEIFALYGQEGYR--------------------- 189 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh---CCCHHHHHHHHCHHHHH---------------------
Confidence 379999999999999999999 68999999987654432 22223333333221110
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeee-cc-ccc--cccCCeEEEEEcCHHHHHHHHHhhCCC-------
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLL-FE-AKM--DKWTKPIVVVWVDPDTQLQRLMARDRT------- 149 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~-~e-~~~--~~~~d~vi~l~~~~~~~~~Rl~~R~~~------- 149 (230)
.++ .. .+.+.......+|+..+-.. .. ..+ ......+||+++|++++.+|+.+|.+.
T Consensus 190 -~~e-------~~----~l~~ll~~~~~~VI~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~ 257 (309)
T PRK08154 190 -RLE-------RR----ALERLIAEHEEMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNR 257 (309)
T ss_pred -HHH-------HH----HHHHHHhhCCCEEEECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCC
Confidence 000 00 01111112233333333221 11 111 111246899999999999999887531
Q ss_pred -CHHHHHHHHHhcCCcccccccCCEEEeCCC-CHHHHHHHHHHHHHHhh
Q 026952 150 -SEEDARNRINAQMPLDIKRNNADIVINNTG-TLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 150 -~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~~~ 196 (230)
..+.+...++... +.+..+|++|+|++ +++++.++|...+..++
T Consensus 258 ~~~e~i~~~~~~R~---~~y~~ad~~I~t~~~s~ee~~~~I~~~l~~~~ 303 (309)
T PRK08154 258 EAMEDLRRILASRE---PLYARADAVVDTSGLTVAQSLARLRELVRPAL 303 (309)
T ss_pred ChHHHHHHHHHHHH---HHHHhCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 1345555444333 33456999999988 99999999999887654
No 78
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.49 E-value=4.5e-14 Score=110.83 Aligned_cols=136 Identities=18% Similarity=0.092 Sum_probs=80.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hC-CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-AN-DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~-g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
+|+|+|+|||||||+|+.|+ .+ ++.+++.|+++....+.. .... +..-++..+.++...+...+- .+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~------~~~~-~~~~~d~p~a~D~~~l~~~L~----~l 69 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIP------VDEN-GFKQWDVLEALDMEAMMSTLD----YW 69 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCC------hHhh-cCCCCCCcccccHHHHHHHHH----HH
Confidence 58999999999999999999 45 788999999987533211 0010 111123334455555433321 00
Q ss_pred HHHHhhhhHHHHH--------------HHHHHHHH-HHhcCCcEEEEEeeeecc-ccccccCCeEEEEEcCHHHHHHHHH
Q 026952 81 QLLNGLLAPYISL--------------GIFMEVLK-LWIKGCKVIVLDVPLLFE-AKMDKWTKPIVVVWVDPDTQLQRLM 144 (230)
Q Consensus 81 ~~l~~~~~p~v~~--------------~~~~~~~~-~~~~~~~~viie~~~~~e-~~~~~~~d~vi~l~~~~~~~~~Rl~ 144 (230)
..-..+..+.... .+...... ......++|++||..++. ..+...+|++||+++|.+++++|+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~ 149 (187)
T cd02024 70 RETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRRE 149 (187)
T ss_pred HcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHH
Confidence 0000000000000 00000000 012345689999987765 4677789999999999999999999
Q ss_pred hhCCC
Q 026952 145 ARDRT 149 (230)
Q Consensus 145 ~R~~~ 149 (230)
+|++.
T Consensus 150 ~R~~~ 154 (187)
T cd02024 150 ARTGY 154 (187)
T ss_pred HcCCc
Confidence 99763
No 79
>PRK06217 hypothetical protein; Validated
Probab=99.48 E-value=7.8e-13 Score=103.88 Aligned_cols=103 Identities=20% Similarity=0.229 Sum_probs=65.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|+.|+|+|+|||||||+|+.|+ .+|++++++|.+...- ++. . +.... . .+.
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~---~~~-----------~-~~~~~--~-----------~~~ 52 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP---TDP-----------P-FTTKR--P-----------PEE 52 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc---CCC-----------C-ccccC--C-----------HHH
Confidence 8999999999999999999999 6899999999987531 100 0 00000 0 000
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeee-ccccccccCCeEEEEEcCHHHHHHHHHhhC
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLL-FEAKMDKWTKPIVVVWVDPDTQLQRLMARD 147 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~-~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~ 147 (230)
.. ..+......+.. .|+||... ........+|.+|||++|.+++.+|+.+|.
T Consensus 53 ------~~---------~~~~~~~~~~~~-~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 53 ------RL---------RLLLEDLRPREG-WVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred ------HH---------HHHHHHHhcCCC-EEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCc
Confidence 00 000011112334 57776433 222234457999999999999999999875
No 80
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.48 E-value=2.1e-13 Score=106.60 Aligned_cols=64 Identities=31% Similarity=0.469 Sum_probs=51.0
Q ss_pred eEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCEE-EeCCCCHHHHHHHHHHHHH
Q 026952 128 PIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIV-INNTGTLDDLNEQVRKVLF 193 (230)
Q Consensus 128 ~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~i-I~n~~~~~~v~~~i~~~l~ 193 (230)
.+||+++|.+++.+|+..|.+.+.+.+..++..+..... ..+|++ ++|+++++++.++|.+++.
T Consensus 113 ~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~--~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 113 LVVNITASPDVLAQRLAARGRESREEIEERLARSARFAA--APADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred EEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHHhhccc--ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 689999999999999999977777888888865432221 346775 7888899999999998875
No 81
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.48 E-value=2.8e-14 Score=111.68 Aligned_cols=159 Identities=18% Similarity=0.088 Sum_probs=89.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh------CCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCC
Q 026952 3 IVGLTGGISSGKSTVSNLFKA------NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSD 76 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~------~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 76 (230)
+|+|+|+|||||||+|+.|+. .+..+++.|++++..... . ...+ .++.+..++...+.+.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~-------~-~~~g--~~d~~~~~d~~~l~~~l~-- 68 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTP-------R-DEDG--NYDFESILDLDLLNKNLH-- 68 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccc-------c-ccCC--CCCCCccccHHHHHHHHH--
Confidence 589999999999999999993 245799999998643100 0 0001 111111233333332220
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHH--HHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHH-HHHHHHhhC----CC
Q 026952 77 SSKRQLLNGLLAPYISLGIFMEVL--KLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDT-QLQRLMARD----RT 149 (230)
Q Consensus 77 ~~~~~~l~~~~~p~v~~~~~~~~~--~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~-~~~Rl~~R~----~~ 149 (230)
.+..-..+..|.+......... .....+.+++|+||...+...+....|+.||+++|.++ +..|...|+ |.
T Consensus 69 --~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~ 146 (179)
T cd02028 69 --DLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGY 146 (179)
T ss_pred --HHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCC
Confidence 0000001111211110000000 00113457899999877766777778999999999998 877777665 67
Q ss_pred CHHHHHHHHHhcCC------cccccccCCEEEe
Q 026952 150 SEEDARNRINAQMP------LDIKRNNADIVIN 176 (230)
Q Consensus 150 ~~~~~~~r~~~~~~------~~~~~~~ad~iI~ 176 (230)
+.+....++. ..+ ..+.+..||++++
T Consensus 147 ~~~~~i~~~~-~~~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 147 SAELTILMWP-SVPSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred CHHHHhhhcc-cccCchhhcCCCchhccceecc
Confidence 7776665532 222 2345677887765
No 82
>PLN02199 shikimate kinase
Probab=99.48 E-value=1e-12 Score=108.93 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=98.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
-|+|+|.+||||||+++.|+ .+|++++++|.+.++... +..+.++.+.+|...|+.
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~--G~sI~eIf~~~GE~~FR~--------------------- 160 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN--GTSVAEIFVHHGENFFRG--------------------- 160 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc--CCCHHHHHHHhCHHHHHH---------------------
Confidence 58999999999999999999 599999999999887532 344667777776544321
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe--eeeccccccc-cCCeEEEEEcCHHHHHHHHHh-----hCCC---C
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV--PLLFEAKMDK-WTKPIVVVWVDPDTQLQRLMA-----RDRT---S 150 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~--~~~~e~~~~~-~~d~vi~l~~~~~~~~~Rl~~-----R~~~---~ 150 (230)
.... +...+. ...+.||.-| ..+.+..+.. ....+|||++|++++.+|+.+ |.-. +
T Consensus 161 ~E~e---------~L~~L~----~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~ 227 (303)
T PLN02199 161 KETD---------ALKKLS----SRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDES 227 (303)
T ss_pred HHHH---------HHHHHH----hcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCC
Confidence 0001 111111 1223333222 2222222211 135789999999999999985 2211 1
Q ss_pred HHH---HHHHHHhcC-CcccccccCCEEEe------------CCC-CHHHHHHHHHHHHHHhhCC
Q 026952 151 EED---ARNRINAQM-PLDIKRNNADIVIN------------NTG-TLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 151 ~~~---~~~r~~~~~-~~~~~~~~ad~iI~------------n~~-~~~~v~~~i~~~l~~~~~~ 198 (230)
.+. ...++..-+ ...+.|..||++|+ +++ +++++..+|.+.+..++..
T Consensus 228 ~d~~~~~~~~L~~L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~ 292 (303)
T PLN02199 228 GDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEK 292 (303)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 211 112222211 34455666999888 444 8889999999988887765
No 83
>PRK13973 thymidylate kinase; Provisional
Probab=99.47 E-value=3.4e-12 Score=102.67 Aligned_cols=171 Identities=13% Similarity=0.187 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-h---CCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCCh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-A---NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS 77 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~---~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (230)
++|+|.|.+||||||+++.|+ . .|+.++.+.... +.+..+.+.+.+.... ...++.....-.+. .
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~------~~~~g~~ir~~l~~~~---~~~~~~~~~~ll~~--a 72 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPG------GSPGAEAIRHVLLSGA---AELYGPRMEALLFA--A 72 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC------CCchHHHHHHHHcCCC---ccCCCHHHHHHHHH--H
Confidence 699999999999999999999 3 488887764332 1222333333322110 11122222111111 1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeee----ecc-----------cccc------ccCCeEEEEEcCH
Q 026952 78 SKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPL----LFE-----------AKMD------KWTKPIVVVWVDP 136 (230)
Q Consensus 78 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~----~~e-----------~~~~------~~~d~vi~l~~~~ 136 (230)
...+.+...+.|. . ..+.+||+|... .+. ..+. ..+|+++||++|+
T Consensus 73 ~r~~~~~~~i~~~------------l-~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~ 139 (213)
T PRK13973 73 ARDDHVEEVIRPA------------L-ARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPA 139 (213)
T ss_pred HHHHHHHHHHHHH------------H-HCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCH
Confidence 1112222222221 1 234567777321 010 0010 2469999999999
Q ss_pred HHHHHHHHhhCCCC---------HHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 137 DTQLQRLMARDRTS---------EEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 137 ~~~~~Rl~~R~~~~---------~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
+++.+|+.+|...+ .+-..++.+...........--.+||++++++++.++|.+++....
T Consensus 140 e~~~~Rl~~R~~~~~~~~~e~~~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~~ 208 (213)
T PRK13973 140 EVGLERAAKRRGSDTPDRFEKEDLAFHEKRREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQRL 208 (213)
T ss_pred HHHHHHHHhccCCCccCchhhchHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999885321 1111222222212211111111468999999999999999987644
No 84
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.47 E-value=4.5e-12 Score=100.98 Aligned_cols=72 Identities=21% Similarity=0.276 Sum_probs=48.0
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCCCCHH-----HHHHHHHh-cCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDRTSEE-----DARNRINA-QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~~~~~-----~~~~r~~~-~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
.+|++||+++|++++.+|+.+|++.+.. +...+... +...........++||++++++++.++|.+++..++
T Consensus 127 ~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~~~ 204 (205)
T PRK00698 127 RPDLTLYLDVPPEVGLARIRARGELDRIEQEGLDFFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKAWL 204 (205)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999642211 22233321 111211112233578999999999999999987654
No 85
>PLN02842 nucleotide kinase
Probab=99.46 E-value=1.1e-12 Score=116.16 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=103.3
Q ss_pred EEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHHHHH
Q 026952 6 LTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQLLN 84 (230)
Q Consensus 6 I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 84 (230)
|.|+|||||||+|+.|+ .+|+.+++++++.+.....+++.+..+.+.+.. |.+.....
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~------G~lvPdei--------------- 60 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNS------GRLVPDEI--------------- 60 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhC------CCCCcHHH---------------
Confidence 78999999999999999 699999999999887766666777776665532 21111111
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eecc-----ccccccCCeEEEEEcCHHHHHHHHHhhC-----------
Q 026952 85 GLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLFE-----AKMDKWTKPIVVVWVDPDTQLQRLMARD----------- 147 (230)
Q Consensus 85 ~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~e-----~~~~~~~d~vi~l~~~~~~~~~Rl~~R~----------- 147 (230)
+...+. +++........+ +|+|+. .... .......|++|+|++|++++.+|+.+|.
T Consensus 61 --v~~ll~----drl~~~~~~~~G-~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~ 133 (505)
T PLN02842 61 --VIAMVT----GRLSREDAKEKG-WLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHI 133 (505)
T ss_pred --HHHHHH----HHHhCccccCCc-EEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCcccc
Confidence 001111 111110001223 456863 1111 0112246899999999999999988763
Q ss_pred ------------------CCCHHHHHHHHHhcC----CcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCC
Q 026952 148 ------------------RTSEEDARNRINAQM----PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 148 ------------------~~~~~~~~~r~~~~~----~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~ 198 (230)
..+++.+.+|++.+. +....+...-..||++++++++.++|.+++......
T Consensus 134 ~~~pP~~~~~~~rL~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L~~ 206 (505)
T PLN02842 134 KNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLLSQIQKD 206 (505)
T ss_pred ccCCCCccccccccccCCCCCHHHHHHHHHHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence 235778888875432 222222211235899999999999999998875544
No 86
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.46 E-value=2.3e-13 Score=111.28 Aligned_cols=165 Identities=15% Similarity=0.052 Sum_probs=97.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh----CC--CcEEehhhhhHHhhcCCchHHHHHH----HHhCCcccCCCCccCHHHHHhh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA----ND--VPVVDADIIARDVLKKGTGGWKKVV----AAFGEDILLPNGEVDRSKLGQI 72 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~----~g--~~~i~~d~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~l~~~ 72 (230)
+|+|+|+|||||||+++.|.+ .| ..+++.|++++- ..... -.... ...+.+.+. ..+.+-+.+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~--~r~~~-~~~~~~a~~~~~nfdHf~-PeAnd~dlL~~~ 76 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRY--ERMEM-KMAIAEALDAGRNFSHFG-PEANLFDLLEEL 76 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccC--CchhH-HHHHHHHhhcCCCCCCCC-cccccHHHHHHH
Confidence 589999999999999999982 34 568999999872 11110 00111 111222221 223344444333
Q ss_pred hcCChHHHHHHHhhhhHHHHHHH----------HHHHH-HHHhcCCcEEEEEeee----eccccccccCCeEEEEEcCHH
Q 026952 73 VFSDSSKRQLLNGLLAPYISLGI----------FMEVL-KLWIKGCKVIVLDVPL----LFEAKMDKWTKPIVVVWVDPD 137 (230)
Q Consensus 73 ~~~~~~~~~~l~~~~~p~v~~~~----------~~~~~-~~~~~~~~~viie~~~----~~e~~~~~~~d~vi~l~~~~~ 137 (230)
+ ..+..-..+..|.+.... ..+.. .....+.+++++||.. +....+++.+|+.||++++.+
T Consensus 77 l----~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~d 152 (277)
T cd02029 77 F----RTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIIN 152 (277)
T ss_pred H----HHHHcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHH
Confidence 2 111111112233332100 00000 0012467899999764 233567788999999999999
Q ss_pred HHHHHHHhhC----CCCHHHHHHHHHhcCC-----cccccccCCEEE
Q 026952 138 TQLQRLMARD----RTSEEDARNRINAQMP-----LDIKRNNADIVI 175 (230)
Q Consensus 138 ~~~~Rl~~R~----~~~~~~~~~r~~~~~~-----~~~~~~~ad~iI 175 (230)
++..|...|+ |.+.+.+...+.+.++ ..+..+.+|+++
T Consensus 153 lr~irRI~RD~~ERGrs~EsVi~qilrrmpdy~~yI~PQ~~~tDI~f 199 (277)
T cd02029 153 LEWIQKIHRDTAERGYSAEAVMDTILRRMPDYINYICPQFSRTDINF 199 (277)
T ss_pred HHHHHHHHhhhHhhCCCHHHHHHHHHHhCchHHhhCCcccccCcEEE
Confidence 9988888776 7899999888888776 345667888765
No 87
>PRK14529 adenylate kinase; Provisional
Probab=99.46 E-value=2e-12 Score=104.07 Aligned_cols=160 Identities=21% Similarity=0.246 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
.|+|.|+|||||||+|+.|+ ++|+.+++++++.++....+.+....+.+... .|.+-..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~------~G~lvpd-------------- 61 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYID------RGDLVPD-------------- 61 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHh------ccCcchH--------------
Confidence 48889999999999999999 69999999999988765555555554444332 1211111
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeec-ccc--------ccccCCeEEEEEcCHHHHHHHHHhhC----
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLF-EAK--------MDKWTKPIVVVWVDPDTQLQRLMARD---- 147 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~-e~~--------~~~~~d~vi~l~~~~~~~~~Rl~~R~---- 147 (230)
.++.+.+ .+++... . ...+|+|| |-.. +.. .....|.+|+|++|.+++.+|+..|.
T Consensus 62 ---ei~~~lv----~~~l~~~--~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~ 131 (223)
T PRK14529 62 ---DITIPMI----LETLKQD--G-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKN 131 (223)
T ss_pred ---HHHHHHH----HHHHhcc--C-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccc
Confidence 1111111 2222211 1 23367885 3211 111 11246899999999999999999872
Q ss_pred -------------------------------CCC-HHHHHHHHHhcCC-------ccccccc-----CC--EEEeCCCCH
Q 026952 148 -------------------------------RTS-EEDARNRINAQMP-------LDIKRNN-----AD--IVINNTGTL 181 (230)
Q Consensus 148 -------------------------------~~~-~~~~~~r~~~~~~-------~~~~~~~-----ad--~iI~n~~~~ 181 (230)
.++ ++.+.+|++.+.. ...++.. .. +.||+++++
T Consensus 132 ~~~~~~~~~~~~p~~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~ 211 (223)
T PRK14529 132 DNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSI 211 (223)
T ss_pred cCCcccccccCCCcccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCH
Confidence 022 5678888754322 1123331 22 358999999
Q ss_pred HHHHHHHHHHH
Q 026952 182 DDLNEQVRKVL 192 (230)
Q Consensus 182 ~~v~~~i~~~l 192 (230)
+++.++|.+.+
T Consensus 212 ~~V~~~i~~~l 222 (223)
T PRK14529 212 DEIKETLLKQL 222 (223)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 88
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.45 E-value=1e-11 Score=116.93 Aligned_cols=189 Identities=13% Similarity=0.140 Sum_probs=110.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhh----cCCc----------hHHHH--------HHHHhCCccc
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVL----KKGT----------GGWKK--------VVAAFGEDIL 58 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~----~~~~----------~~~~~--------l~~~~~~~~~ 58 (230)
++|+|+|||||||||+|+.|+ ++|+.+++++.++|.+. ..+- ..... +...+...+.
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTSYA 114 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHcCCcccccccCCcCCHHHHhhhhhHHHHhhCceEec
Confidence 389999999999999999999 79999999999999763 1110 00011 1111211110
Q ss_pred CCCCc----------------------------cCHHHHHhhhcCChHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCCcE
Q 026952 59 LPNGE----------------------------VDRSKLGQIVFSDSSKRQLLNGL-LAPYISLGIFMEVLKLWIKGCKV 109 (230)
Q Consensus 59 ~~~~~----------------------------~~~~~l~~~~~~~~~~~~~l~~~-~~p~v~~~~~~~~~~~~~~~~~~ 109 (230)
..++. ++-......+ -+++--...+.+ ..|.+.+.+....+.... .. -
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dv~~~i-r~~~v~~~vS~ia~~p~VR~~l~~~qr~~~~-~~-~ 191 (863)
T PRK12269 115 PLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLL-RSDEVESAVSYFAAMPAIRAIMTGKIRSAVC-GA-R 191 (863)
T ss_pred ccccccccccccccccccccccccccccCceEEECCeEchhhh-cchHHHHHHHHHhCCHHHHHHHHHHHHHHHh-cC-C
Confidence 00000 0000001110 011111222222 466777766665555432 22 3
Q ss_pred EEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhC--CCCHHHHH----HHHHhcC--CcccccccCC-EEEeCCC-
Q 026952 110 IVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARD--RTSEEDAR----NRINAQM--PLDIKRNNAD-IVINNTG- 179 (230)
Q Consensus 110 viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~--~~~~~~~~----~r~~~~~--~~~~~~~~ad-~iI~n~~- 179 (230)
+|+||+-+...-+. ..++.+||+|++++|++|+.+.. ..+.+++. .|..... ...+.....| ++|||+.
T Consensus 192 ~V~eGRDigTvVfP-dA~~KifL~As~e~RA~RR~~e~~~~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~l 270 (863)
T PRK12269 192 VVCEGRDLTTVVFV-DADLKCYLDASIEARVARRWAQGTSRLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCL 270 (863)
T ss_pred EEEECCCCccEECC-CCCEEEEEECCHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCCC
Confidence 79998876554432 36899999999999998875432 24444444 4433332 3455555567 4689887
Q ss_pred CHHHHHHHHHHHHHH
Q 026952 180 TLDDLNEQVRKVLFE 194 (230)
Q Consensus 180 ~~~~v~~~i~~~l~~ 194 (230)
+++++.+.|.++++.
T Consensus 271 ~ieevv~~i~~~~~~ 285 (863)
T PRK12269 271 TIEEVCERIAREAHR 285 (863)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999888874
No 89
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.45 E-value=1.8e-13 Score=122.44 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-C-CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-N-DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~-g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
.+|+|+|++||||||+++.|+. . +..+++.|++..... . .+. .++....++...+.+.+ ..
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~---------~---i~~-nfD~P~a~D~d~L~enL----~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSR---------I---IDG-NFDDPRLTDYDTLLDNI----HD 128 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchh---------h---hCc-cCCChhhcchhHHHHHH----HH
Confidence 5899999999999999999993 3 567899998742110 0 000 11112222222222211 11
Q ss_pred HHHHHhhhhHHHHHHHHHHHH-H-HHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhC----CCCHHH
Q 026952 80 RQLLNGLLAPYISLGIFMEVL-K-LWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARD----RTSEED 153 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~-~-~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~----~~~~~~ 153 (230)
+.....+..|.+......... . ....+.+++|+||..++...+...+|+.||+++|.+.+..|...|+ |.+.++
T Consensus 129 Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~Es 208 (656)
T PLN02318 129 LKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEE 208 (656)
T ss_pred HhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccHhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHH
Confidence 111112223333222111110 0 0113457899999887777788889999999988777655554443 678888
Q ss_pred HHHHHHhcC-C-----cccccccCCEEEeC
Q 026952 154 ARNRINAQM-P-----LDIKRNNADIVINN 177 (230)
Q Consensus 154 ~~~r~~~~~-~-----~~~~~~~ad~iI~n 177 (230)
+..++.... + .++.++.||++|+|
T Consensus 209 Vi~q~~~~VkP~y~~FIeP~kk~ADIII~n 238 (656)
T PLN02318 209 IIHQISETVYPMYKAFIEPDLQTAHIKIVN 238 (656)
T ss_pred HHHHHHHhhcchHHHHhCcchhcceEEEec
Confidence 777765432 3 35567889999977
No 90
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.43 E-value=1.3e-12 Score=103.14 Aligned_cols=116 Identities=21% Similarity=0.206 Sum_probs=69.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
.|+|.|+|||||||+|+.|+ ++|+.++++|++.++......+.+..+.+.+.... .+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~-------------- 61 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGK-----LVPDE-------------- 61 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCC-----ccCHH--------------
Confidence 38999999999999999999 68999999999888765544444444433332110 00100
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eee------cccccc--ccCCeEEEEEcCHHHHHHHHHhhC
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLL------FEAKMD--KWTKPIVVVWVDPDTQLQRLMARD 147 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~------~e~~~~--~~~d~vi~l~~~~~~~~~Rl~~R~ 147 (230)
.+..++ ...+.... .+ ..+|+|+ |.. ++.... ...+.+|++++|++++.+|+.+|.
T Consensus 62 ~~~~l~--------~~~l~~~~-~~-~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 62 IVIKLL--------KERLKKPD-CK-KGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred HHHHHH--------HHHHhccc-cc-CCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 011111 11111100 12 2357775 221 111111 146889999999999999999885
No 91
>PRK05439 pantothenate kinase; Provisional
Probab=99.43 E-value=3.4e-13 Score=113.34 Aligned_cols=165 Identities=20% Similarity=0.184 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-C-------CCcEEehhhhhHHhhcCCchHHHHHHHHhCC-cccCCCCccCHHHHHhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-N-------DVPVVDADIIARDVLKKGTGGWKKVVAAFGE-DILLPNGEVDRSKLGQI 72 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~-------g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~ 72 (230)
.+|+|+|+|||||||+|+.|+. + ...++++|+++..... +.+ .|. .-....+.++...+...
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~--------l~~-~~l~~~kg~Pes~D~~~l~~~ 157 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAV--------LEE-RGLMKRKGFPESYDMRALLRF 157 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHH--------Hhh-hhccccCCCcccccHHHHHHH
Confidence 5899999999999999999983 1 2568999999754211 111 010 00111223455444332
Q ss_pred hcCChHHHHHHHh-hhhHHHHHHHHHHHH-H-HHhcCCcEEEEEeeeec-ccc------ccccCCeEEEEEcCHHHHHHH
Q 026952 73 VFSDSSKRQLLNG-LLAPYISLGIFMEVL-K-LWIKGCKVIVLDVPLLF-EAK------MDKWTKPIVVVWVDPDTQLQR 142 (230)
Q Consensus 73 ~~~~~~~~~~l~~-~~~p~v~~~~~~~~~-~-~~~~~~~~viie~~~~~-e~~------~~~~~d~vi~l~~~~~~~~~R 142 (230)
+ ..++.... +..|.+......... . ....+.+++|+||..++ ... ....+|+.||+++|.+++.+|
T Consensus 158 L----~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w 233 (311)
T PRK05439 158 L----SDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKW 233 (311)
T ss_pred H----HHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHH
Confidence 2 11111111 223333222111110 0 01134578999986544 222 256789999999999997765
Q ss_pred HHhhC-------------------CCCHHHHHHHHHhcC-----C-----cccccccCCEEEeCCC
Q 026952 143 LMARD-------------------RTSEEDARNRINAQM-----P-----LDIKRNNADIVINNTG 179 (230)
Q Consensus 143 l~~R~-------------------~~~~~~~~~r~~~~~-----~-----~~~~~~~ad~iI~n~~ 179 (230)
+.+|. +.+.+++..+....+ + ..+.+..||+||..++
T Consensus 234 ~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~ 299 (311)
T PRK05439 234 YIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGA 299 (311)
T ss_pred HHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCC
Confidence 55442 345566555554321 1 2456788999886554
No 92
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.41 E-value=7.1e-13 Score=104.23 Aligned_cols=87 Identities=21% Similarity=0.219 Sum_probs=59.0
Q ss_pred CcEEEEEeeeeccccccc-cC-CeEEEEEc-CHHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHH
Q 026952 107 CKVIVLDVPLLFEAKMDK-WT-KPIVVVWV-DPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDD 183 (230)
Q Consensus 107 ~~~viie~~~~~e~~~~~-~~-d~vi~l~~-~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~ 183 (230)
+..+++|+..-.-..+.. .. ..+||+.+ +.+++.+|+.+|+..+.+++.+|+............+|++|.|+ ++++
T Consensus 93 ~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~~~fd~~I~n~-~l~~ 171 (184)
T smart00072 93 GKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEYHLFDYVIVND-DLED 171 (184)
T ss_pred CCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCCEEEECc-CHHH
Confidence 346677754221111211 12 36899984 55678999999977888999999875433222345689999998 7889
Q ss_pred HHHHHHHHHHH
Q 026952 184 LNEQVRKVLFE 194 (230)
Q Consensus 184 v~~~i~~~l~~ 194 (230)
..+++.+++..
T Consensus 172 ~~~~l~~~i~~ 182 (184)
T smart00072 172 AYEELKEILEA 182 (184)
T ss_pred HHHHHHHHHHh
Confidence 99999888764
No 93
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.39 E-value=9.6e-12 Score=95.74 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=84.6
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHHH
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQL 82 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (230)
|++.|++||||||+|+.|+ .+|..+++.|++...... .. ...+..... .....+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~------~~--~~~~~~~~~-----------------~~~~~~ 55 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI------EK--MSAGIPLND-----------------DDRWPW 55 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHH------HH--HHcCCCCCh-----------------hhHHHH
Confidence 5789999999999999999 689999999987432110 00 011111100 000011
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecccc---ccc-cCC-eEEEEEcCHHHHHHHHHhhCCC--CHHHHH
Q 026952 83 LNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAK---MDK-WTK-PIVVVWVDPDTQLQRLMARDRT--SEEDAR 155 (230)
Q Consensus 83 l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~---~~~-~~d-~vi~l~~~~~~~~~Rl~~R~~~--~~~~~~ 155 (230)
.. .+.+........+... |++........ +.. ..+ .++|+++|++++.+|+.+|.+. +.+.+.
T Consensus 56 ~~---------~~~~~~~~~l~~~~~~-Vi~~t~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~ 125 (163)
T TIGR01313 56 LQ---------NLNDASTAAAAKNKVG-IITCSALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMKADMLE 125 (163)
T ss_pred HH---------HHHHHHHHHHhcCCCE-EEEecccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCCCCHHHHH
Confidence 11 1111111122234433 45432222211 111 123 3689999999999999999752 345555
Q ss_pred HHHHhcCCcccccccCC-EEEeCCCCHHHHHHHHHHHH
Q 026952 156 NRINAQMPLDIKRNNAD-IVINNTGTLDDLNEQVRKVL 192 (230)
Q Consensus 156 ~r~~~~~~~~~~~~~ad-~iI~n~~~~~~v~~~i~~~l 192 (230)
.++..... +....++ .+||++++++++.+++.+.+
T Consensus 126 ~~~~~~~~--~~~~e~~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 126 SQFAALEE--PLADETDVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred HHHHHhCC--CCCCCCceEEEECCCCHHHHHHHHHHHH
Confidence 55543221 1111123 57999999999999988765
No 94
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.39 E-value=2.7e-12 Score=100.13 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=48.6
Q ss_pred CcEEEEEeeeecccc---ccc--cCCeEEEEEcCHHHHHHHHHhh--CCCCHHHHHHHHHhcCCcccccccCCEEEeCCC
Q 026952 107 CKVIVLDVPLLFEAK---MDK--WTKPIVVVWVDPDTQLQRLMAR--DRTSEEDARNRINAQMPLDIKRNNADIVINNTG 179 (230)
Q Consensus 107 ~~~viie~~~~~e~~---~~~--~~d~vi~l~~~~~~~~~Rl~~R--~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~ 179 (230)
+..||+++....+.. .+. ....++|+++|++++.+|..++ ...+.+++..++..+.+.++. .||++|+|++
T Consensus 78 g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~--~Ad~vI~~~~ 155 (176)
T PRK05541 78 GMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEP--KADLVIDNSC 155 (176)
T ss_pred CCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCC--CCCEEEeCCC
Confidence 456777865433211 011 1246799999999999997532 112233444455555555443 3899999985
Q ss_pred --CHHHHHHHHHHHH
Q 026952 180 --TLDDLNEQVRKVL 192 (230)
Q Consensus 180 --~~~~v~~~i~~~l 192 (230)
++++..+++.+.+
T Consensus 156 ~~~~~~~v~~i~~~l 170 (176)
T PRK05541 156 RTSLDEKVDLILNKL 170 (176)
T ss_pred CCCHHHHHHHHHHHH
Confidence 5555555554444
No 95
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.38 E-value=1.1e-12 Score=109.44 Aligned_cols=166 Identities=14% Similarity=0.129 Sum_probs=88.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH---h-C----CCcEEehhhhhHHhhcCCchHHHHHHHHhCC-cccCCCCccCHHHHHh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK---A-N----DVPVVDADIIARDVLKKGTGGWKKVVAAFGE-DILLPNGEVDRSKLGQ 71 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~---~-~----g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~ 71 (230)
+.+|+|+|++||||||+|+.|. . . .+.++++|.++..... .+..+. .-....+.++...+..
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~---------l~~~g~~~~~g~P~s~D~~~l~~ 132 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQV---------LKERNLMKKKGFPESYDMHRLVK 132 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHH---------HHHcCCccccCCChhccHHHHHH
Confidence 3589999999999999999886 2 1 2457889988753211 111110 0011122334333322
Q ss_pred hhcCChHHHHHHH-hhhhHHHHHHHHHHHHH--HHhcCCcEEEEEeeeecc-cc----------ccccCCeEEEEEcCHH
Q 026952 72 IVFSDSSKRQLLN-GLLAPYISLGIFMEVLK--LWIKGCKVIVLDVPLLFE-AK----------MDKWTKPIVVVWVDPD 137 (230)
Q Consensus 72 ~~~~~~~~~~~l~-~~~~p~v~~~~~~~~~~--~~~~~~~~viie~~~~~e-~~----------~~~~~d~vi~l~~~~~ 137 (230)
.+ ..+.... .+..|.+.......... ....+.+++|+||..++. .. ....+|+.||+++|.+
T Consensus 133 ~L----~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d 208 (290)
T TIGR00554 133 FL----SDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEED 208 (290)
T ss_pred HH----HHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHH
Confidence 21 0111111 13334443222111110 011356789999875442 22 2466899999999999
Q ss_pred HHHHHHHhhC-------------------CCCHHHHHHHHHhcC----------CcccccccCCEEEeCCC
Q 026952 138 TQLQRLMARD-------------------RTSEEDARNRINAQM----------PLDIKRNNADIVINNTG 179 (230)
Q Consensus 138 ~~~~Rl~~R~-------------------~~~~~~~~~r~~~~~----------~~~~~~~~ad~iI~n~~ 179 (230)
++.+|+.+|. +.+++++..++...+ ...+.+.+||+|+..++
T Consensus 209 ~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 209 LLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred HHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCC
Confidence 9987776652 234444444432221 13456688999887554
No 96
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.38 E-value=1.3e-11 Score=92.58 Aligned_cols=86 Identities=22% Similarity=0.387 Sum_probs=62.5
Q ss_pred CCcEEEEEeeeeccccc-cccCC-eEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCE-EEeCCCCHH
Q 026952 106 GCKVIVLDVPLLFEAKM-DKWTK-PIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADI-VINNTGTLD 182 (230)
Q Consensus 106 ~~~~viie~~~~~e~~~-~~~~d-~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~-iI~n~~~~~ 182 (230)
.+.++++.+.-..-+.. ++... +++.|.++++++.+|+.+|+..+.+++..|+.+...... ...|. .|||+|.++
T Consensus 93 ~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~p~VLaqRL~~RGREs~eeI~aRL~R~a~~~~--~~~dv~~idNsG~l~ 170 (192)
T COG3709 93 AGDVVLVNGSRAVLPQARRRYPQLLVVCITASPEVLAQRLAERGRESREEILARLARAARYTA--GPGDVTTIDNSGELE 170 (192)
T ss_pred CCCEEEEeccHhhhHHHHHhhhcceeEEEecCHHHHHHHHHHhccCCHHHHHHHHHhhccccc--CCCCeEEEcCCCcHH
Confidence 44567777543222222 22233 478899999999999999999999999999987654322 13564 699999999
Q ss_pred HHHHHHHHHHH
Q 026952 183 DLNEQVRKVLF 193 (230)
Q Consensus 183 ~v~~~i~~~l~ 193 (230)
+.-+++..++.
T Consensus 171 ~ag~~ll~~l~ 181 (192)
T COG3709 171 DAGERLLALLH 181 (192)
T ss_pred HHHHHHHHHHH
Confidence 99888888776
No 97
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.37 E-value=2.5e-11 Score=96.04 Aligned_cols=62 Identities=19% Similarity=0.361 Sum_probs=40.5
Q ss_pred CCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHH-----HH-hcCCcccccccCCEEEeCCCCHHHHHHHH
Q 026952 126 TKPIVVVWVDPDTQLQRLMARDRTSEEDARNR-----IN-AQMPLDIKRNNADIVINNTGTLDDLNEQV 188 (230)
Q Consensus 126 ~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r-----~~-~~~~~~~~~~~ad~iI~n~~~~~~v~~~i 188 (230)
+|+++|+++|++++.+|+..|++.+.+....+ .. .+.+.... ....++||++++++++.++|
T Consensus 128 ~d~~i~l~~~~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 128 PDLTIYLDIDPEVALERLRKRGELDREEFEKLDFFEKVRQRYLELADK-EKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred CCEEEEEeCCHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEeCCCCHHHHHhhC
Confidence 79999999999999999999876443322221 11 11111111 22346899999999988764
No 98
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.37 E-value=1.4e-12 Score=101.90 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=50.4
Q ss_pred eEEEE-EcCHHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHH
Q 026952 128 PIVVV-WVDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLF 193 (230)
Q Consensus 128 ~vi~l-~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~ 193 (230)
..|++ .++.+.+.+|+.+|...+.+.+..|++.+.........+|++|.|+ +++++.+++.+++.
T Consensus 114 ~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~~~~~~d~~i~n~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 114 VSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADEFDYVIVND-DLEKAVEELKSIIL 179 (180)
T ss_pred EEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccccCcEEEECC-CHHHHHHHHHHHHh
Confidence 34555 4556888999999977788899999877654334456799999996 88999999988774
No 99
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.37 E-value=9.2e-12 Score=94.65 Aligned_cols=137 Identities=22% Similarity=0.297 Sum_probs=77.5
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHHH
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQL 82 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (230)
|+|+|+|||||||+|+.|+ .+|+.+++.|.+.+...... ..++.+.++... +. ..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~-----------~~----------~~ 57 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMS---IPEIFAEEGEEG-----------FR----------EL 57 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCC---HHHHHHHHCHHH-----------HH----------HH
Confidence 7899999999999999999 68999999998876654321 122222221110 00 00
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eecccc---ccccCCeEEEEEcCHHHHHHHHHhhCC------CCHH
Q 026952 83 LNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLFEAK---MDKWTKPIVVVWVDPDTQLQRLMARDR------TSEE 152 (230)
Q Consensus 83 l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~e~~---~~~~~d~vi~l~~~~~~~~~Rl~~R~~------~~~~ 152 (230)
... + +.. .....+.++..+. ...... .......+||+++|++++.+|+.+|.. .+.+
T Consensus 58 e~~---------~---~~~-~~~~~~~vi~~g~~~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~ 124 (154)
T cd00464 58 ERE---------V---LLL-LLTKENAVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPE 124 (154)
T ss_pred HHH---------H---HHH-HhccCCcEEECCCCccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHH
Confidence 000 0 011 1122344444332 121111 112245789999999999999988742 1123
Q ss_pred HHHHHHHhcCCcccccccCCEEEeCCC
Q 026952 153 DARNRINAQMPLDIKRNNADIVINNTG 179 (230)
Q Consensus 153 ~~~~r~~~~~~~~~~~~~ad~iI~n~~ 179 (230)
.+..+++...+. +.+.+|+++++++
T Consensus 125 ~~~~~~~~r~~~--Y~~~ad~~i~~~~ 149 (154)
T cd00464 125 RLRELLEEREPL--YREVADLTIDTDE 149 (154)
T ss_pred HHHHHHHHHHHH--HHHhCcEEEECCC
Confidence 455555433222 3345999998775
No 100
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.37 E-value=1.2e-12 Score=104.83 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=48.0
Q ss_pred CCeEEEEEcC--HHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCE-EEeCCCCHHHHHHHHHHHHHHh
Q 026952 126 TKPIVVVWVD--PDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADI-VINNTGTLDDLNEQVRKVLFEI 195 (230)
Q Consensus 126 ~d~vi~l~~~--~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~-iI~n~~~~~~v~~~i~~~l~~~ 195 (230)
.|.++++.+| .+++.+|+.+|...+.+.+.+|+.............++ +||++++++++.+++.+++...
T Consensus 123 pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 123 PEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQLPEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4665555554 45789999999777778888888643211111222466 4677789999999999999764
No 101
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.37 E-value=5.5e-11 Score=94.76 Aligned_cols=172 Identities=21% Similarity=0.270 Sum_probs=97.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh----CCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCC
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKA----NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSD 76 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~----~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 76 (230)
+++|+|.|.-||||||+++.|.+ .|+.++-+.... +++....+.+..-. ..+.++.....-.++
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~------~~~ige~iR~~ll~----~~~~~~~~~e~lLfa-- 70 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG------GTPIGEKIRELLLN----GEEKLSPKAEALLFA-- 70 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC------CChHHHHHHHHHcC----CccCCCHHHHHHHHH--
Confidence 47999999999999999999982 577665553321 23334444443211 112334444333322
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe----eeeccc--------------cccc---cCCeEEEEEcC
Q 026952 77 SSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV----PLLFEA--------------KMDK---WTKPIVVVWVD 135 (230)
Q Consensus 77 ~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~----~~~~e~--------------~~~~---~~d~vi~l~~~ 135 (230)
.++.+++...+.|.+ ..+.+||.|- ...+.. .+.. .+|+++|+++|
T Consensus 71 adR~~h~~~~i~pal-------------~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~ 137 (208)
T COG0125 71 ADRAQHLEEVIKPAL-------------KEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP 137 (208)
T ss_pred HHHHHHHHHHHHHhh-------------cCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCC
Confidence 233333444444333 2335667762 111110 0111 46999999999
Q ss_pred HHHHHHHHHhhCCC-C---HHH--HHHHHHh-cCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhC
Q 026952 136 PDTQLQRLMARDRT-S---EED--ARNRINA-QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 197 (230)
Q Consensus 136 ~~~~~~Rl~~R~~~-~---~~~--~~~r~~~-~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~ 197 (230)
+++..+|+.+|+.. + .++ +.++... +..........-++||++.+++++.++|.+.+...+.
T Consensus 138 ~e~al~R~~~r~~~~~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l~ 206 (208)
T COG0125 138 PEVALERIRKRGELRDRFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERLG 206 (208)
T ss_pred HHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhhc
Confidence 99999999998543 2 111 2222221 1112111111235799999999999999999886543
No 102
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.36 E-value=1.3e-11 Score=112.00 Aligned_cols=153 Identities=13% Similarity=0.163 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
+.|++.|.+||||||+++.|+ .+|++++++|....+.. +....++++.+|+..|+
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~---g~si~eif~~~Ge~~FR--------------------- 62 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI---GMSIPSYFEEYGEPAFR--------------------- 62 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH---CcCHHHHHHHHHHHHHH---------------------
Confidence 468999999999999999999 69999999999876544 33355666655544332
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe--eeecccccc------ccCCeEEEEEcCHHHHHHHHHhhCC---C
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV--PLLFEAKMD------KWTKPIVVVWVDPDTQLQRLMARDR---T 149 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~--~~~~e~~~~------~~~d~vi~l~~~~~~~~~Rl~~R~~---~ 149 (230)
+.....+ ..+ . ...+.||.-| ..+.+.... +....+|||++|++++.+|+..+.. .
T Consensus 63 ~~E~~~l---------~~~---~-~~~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll 129 (542)
T PRK14021 63 EVEADVV---------ADM---L-EDFDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPML 129 (542)
T ss_pred HHHHHHH---------HHH---H-hcCCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCC
Confidence 1111111 111 1 1122333222 222222221 2234789999999999999975432 1
Q ss_pred ---CHHHHHHHHHhcCCccccc-ccCCEEEeCCC-CHHHHHHHHHHHHHH
Q 026952 150 ---SEEDARNRINAQMPLDIKR-NNADIVINNTG-TLDDLNEQVRKVLFE 194 (230)
Q Consensus 150 ---~~~~~~~r~~~~~~~~~~~-~~ad~iI~n~~-~~~~v~~~i~~~l~~ 194 (230)
+.+.+..-++.. .+.+ +.||++|++++ +++++.++|.+.++.
T Consensus 130 ~~~~~~~~~~l~~~R---~~~Y~~~Ad~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 130 NGDANKRWKKLFKQR---DPVFRQVANVHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred CCCcHHHHHHHHHHH---HHHHHhhCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 233444444432 3333 45899999876 888999988887764
No 103
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2.4e-11 Score=90.00 Aligned_cols=150 Identities=20% Similarity=0.192 Sum_probs=93.2
Q ss_pred EcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHHHHHh
Q 026952 7 TGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQLLNG 85 (230)
Q Consensus 7 ~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 85 (230)
.|.+||||||+++.|+ ++|+.+++.|++... +-.+++...+ -++|.++.-|++.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~----------aNi~KM~~Gi---------------PL~DdDR~pWL~~ 55 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPP----------ANIEKMSAGI---------------PLNDDDRWPWLEA 55 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCH----------HHHHHHhCCC---------------CCCcchhhHHHHH
Confidence 3899999999999999 799999999998643 1122222222 2345566667665
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecccc---ccccC-C-eEEEEEcCHHHHHHHHHhhCC--CCHHHHHHHH
Q 026952 86 LLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAK---MDKWT-K-PIVVVWVDPDTQLQRLMARDR--TSEEDARNRI 158 (230)
Q Consensus 86 ~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~---~~~~~-d-~vi~l~~~~~~~~~Rl~~R~~--~~~~~~~~r~ 158 (230)
+-.-.. ....++.. +|+-...+...+ ++.-+ + .+|||+.+.++..+|+..|.| .+.+-+..++
T Consensus 56 l~~~~~---------~~~~~~~~-~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQf 125 (161)
T COG3265 56 LGDAAA---------SLAQKNKH-VVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQF 125 (161)
T ss_pred HHHHHH---------HhhcCCCc-eEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 432211 11123333 333333333222 22222 3 368999999999999999987 4455555555
Q ss_pred HhcCCcccccccCCE-EEeCCCCHHHHHHHHHHHHHH
Q 026952 159 NAQMPLDIKRNNADI-VINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 159 ~~~~~~~~~~~~ad~-iI~n~~~~~~v~~~i~~~l~~ 194 (230)
+. ++++....|. .||.+.+++++.+++..+++.
T Consensus 126 a~---LE~P~~de~vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 126 AT---LEEPGADEDVLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred HH---hcCCCCCCCEEEeeCCCCHHHHHHHHHHHHhc
Confidence 42 2333322354 689999999999999988864
No 104
>PRK15453 phosphoribulokinase; Provisional
Probab=99.36 E-value=3.8e-12 Score=104.88 Aligned_cols=167 Identities=16% Similarity=0.076 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-C---C--CcEEehhhhhH-HhhcCCchHHHHHHHHhC--CcccCCCCccCHHHHHhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-N---D--VPVVDADIIAR-DVLKKGTGGWKKVVAAFG--EDILLPNGEVDRSKLGQI 72 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~---g--~~~i~~d~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~l~~~ 72 (230)
++|+|+|.|||||||+|+.|++ + + ..+++.|++++ ...+.... .+-.+.-| .+.+. ..+.+-+.+.+.
T Consensus 6 piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~--~~~~~r~g~nfdhf~-PdAnd~dlL~~~ 82 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAA--IAKARAAGRHFSHFG-PEANLFDELEQL 82 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhh--hHHHHhcCCCCCCCC-CCcccHHHHHHH
Confidence 5899999999999999999983 2 3 56899999875 21110000 00011111 11221 222333333332
Q ss_pred hcCChHHHHHHHhhhhHHHHHHH-----HHHHHH------HHhcCCcEEEEEeeeec----cccccccCCeEEEEEcCHH
Q 026952 73 VFSDSSKRQLLNGLLAPYISLGI-----FMEVLK------LWIKGCKVIVLDVPLLF----EAKMDKWTKPIVVVWVDPD 137 (230)
Q Consensus 73 ~~~~~~~~~~l~~~~~p~v~~~~-----~~~~~~------~~~~~~~~viie~~~~~----e~~~~~~~d~vi~l~~~~~ 137 (230)
+- .+..-.....|.+.... ...... ....+.+++++||...+ ...+....|+.||++++.+
T Consensus 83 l~----~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~d 158 (290)
T PRK15453 83 FR----EYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVN 158 (290)
T ss_pred HH----HHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHh
Confidence 21 00000001111110000 000000 01135678999976432 2346778899999999999
Q ss_pred HHHHHHHhhC----CCCHHHHHHHHHhcCCc-----ccccccCCEEE
Q 026952 138 TQLQRLMARD----RTSEEDARNRINAQMPL-----DIKRNNADIVI 175 (230)
Q Consensus 138 ~~~~Rl~~R~----~~~~~~~~~r~~~~~~~-----~~~~~~ad~iI 175 (230)
++..|..+|+ |.+.+.+...+.+.++. .+..+.+|+.+
T Consensus 159 lr~irRI~RD~~ERGrs~EsVi~qilrrmPdy~~yI~PQ~~~tdInf 205 (290)
T PRK15453 159 LEWIQKIHRDTSERGYSREAVMDTILRRMPDYINYITPQFSRTHINF 205 (290)
T ss_pred HHHHHHHHhhhHhhCCCHHHHHHHHHHhCChHhhhCCCCcccCcEEE
Confidence 9988887776 78999988888877763 45567788653
No 105
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=99.35 E-value=1.2e-11 Score=101.71 Aligned_cols=145 Identities=22% Similarity=0.292 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|.+|.|+|.|||||||..+.|.+.|+.++ |++...+. ..+.+.... .++.+.+-++.-.+-+ ....
T Consensus 1 m~~vIiTGlSGaGKs~Al~~lED~Gy~cv--DNlP~~Ll-------~~l~~~~~~----~~~~~~~~Ai~iD~R~-~~~~ 66 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRALEDLGYYCV--DNLPPSLL-------PQLIELLAQ----SNSKIEKVAIVIDIRS-REFF 66 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHHHhcCeeEE--cCCcHHHH-------HHHHHHHHh----cCCCCceEEEEEeCCC-hHHH
Confidence 89999999999999999999999999888 66644332 222222210 0111122111111100 0000
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHh-hCC-------CCHH
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMA-RDR-------TSEE 152 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~-R~~-------~~~~ 152 (230)
..+...+......+. .-.++|++|+.+++.+|..+ |+. ...+
T Consensus 67 ------------~~~~~~~~~l~~~~~------------------~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le 116 (284)
T PF03668_consen 67 ------------EDLFEALDELRKKGI------------------DVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLE 116 (284)
T ss_pred ------------HHHHHHHHHHHhcCC------------------ceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHH
Confidence 000000111001111 12468999999999999986 331 1223
Q ss_pred HHHHHHHhcC-CcccccccCCEEEeCCC-CHHHHHHHHHHHHH
Q 026952 153 DARNRINAQM-PLDIKRNNADIVINNTG-TLDDLNEQVRKVLF 193 (230)
Q Consensus 153 ~~~~r~~~~~-~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~ 193 (230)
. ++++. -+++.++.||++||++. ++.++.+.|.+.+.
T Consensus 117 ~----I~~Er~~L~~lr~~Ad~vIDTs~l~~~~Lr~~i~~~~~ 155 (284)
T PF03668_consen 117 A----IEKERELLEPLRERADLVIDTSNLSVHQLRERIRERFG 155 (284)
T ss_pred H----HHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHhc
Confidence 2 22221 35677889999999988 89999999998775
No 106
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.34 E-value=8.3e-11 Score=92.92 Aligned_cols=69 Identities=20% Similarity=0.357 Sum_probs=44.9
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCCCCH-----HHHHHHHHhcC-CcccccccCCEEEeCCCCHHHHHHHHHHHHH
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDRTSE-----EDARNRINAQM-PLDIKRNNADIVINNTGTLDDLNEQVRKVLF 193 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~~~~-----~~~~~r~~~~~-~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~ 193 (230)
..|.++|+++|++++.+|+.+|++.+. .+..++..... ..........++||++.+++++.++|.+.+.
T Consensus 125 ~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 125 KPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 358899999999999999999875332 12222322211 1111111123578999999999999988764
No 107
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.32 E-value=2.7e-11 Score=96.62 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=52.4
Q ss_pred eEEEEE-cCHHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHh
Q 026952 128 PIVVVW-VDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEI 195 (230)
Q Consensus 128 ~vi~l~-~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~ 195 (230)
..||+. ++.+++.+|+.+|+..+.+.+.+|++.+.........+|++|.|+ +++++.+++.+++...
T Consensus 118 ~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vi~n~-~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 118 VSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAHASEYDYVIVND-DLDTALEELKAIIRAE 185 (205)
T ss_pred EEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHhCCEEEECC-CHHHHHHHHHHHHHHH
Confidence 446665 457889999999987899999999876544333456689988876 8999999999999865
No 108
>PRK08118 topology modulation protein; Reviewed
Probab=99.32 E-value=7.5e-12 Score=96.86 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=33.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIAR 36 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~ 36 (230)
|+.|.|.|+|||||||+|+.|+ .+|+++++.|.+..
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 8899999999999999999999 79999999998753
No 109
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.32 E-value=8.6e-11 Score=91.59 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCC--cEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDV--PVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSS 78 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~--~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (230)
++|+++|+|||||||+|+.|+ ..+. .+++.|.+...+...... ..+..-++.++... ++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~~~~~~~~~~~~~-----------~~ 64 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQD-------AEGGIEFDGDGGVS-----------PG 64 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcc-------cccccccCccCCcc-----------cc
Confidence 589999999999999999999 4443 345778776543211100 00000000000000 00
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecccc----cccc--CC-eEEEEEcCHHHHHHHHHhhCCCCH
Q 026952 79 KRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAK----MDKW--TK-PIVVVWVDPDTQLQRLMARDRTSE 151 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~----~~~~--~d-~vi~l~~~~~~~~~Rl~~R~~~~~ 151 (230)
. ....++..+...+......|. .+|+|........ +... .+ ..|++.||.+++.+|+.+|.+...
T Consensus 65 ~-------~~~~~y~~~~~~~~~~l~~G~-~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~~ 136 (175)
T cd00227 65 P-------EFRLLEGAWYEAVAAMARAGA-NVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVP 136 (175)
T ss_pred h-------HHHHHHHHHHHHHHHHHhCCC-cEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCccc
Confidence 0 000111222222333333454 5677854431111 1111 13 468899999999999999964322
Q ss_pred HHHHHHHHhcCCcccccccCCEEEeCCC-CHHHHHHHHHHHH
Q 026952 152 EDARNRINAQMPLDIKRNNADIVINNTG-TLDDLNEQVRKVL 192 (230)
Q Consensus 152 ~~~~~r~~~~~~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l 192 (230)
.-...... ... .....|++||+++ ++++..++|.+.+
T Consensus 137 ~~~~~~~~---~~~-~~~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 137 GQARKQAR---VVH-AGVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred hHHHHHHH---Hhc-CCCcceEEEECCCCCHHHHHHHHHHhc
Confidence 11111111 111 1233588999986 7888888877654
No 110
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.29 E-value=3.8e-11 Score=91.31 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=75.7
Q ss_pred EEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHHHHH
Q 026952 6 LTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQLLN 84 (230)
Q Consensus 6 I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 84 (230)
|.|+|||||||+|+.|+ ++|+.+|+++++.++....++..+..+.+.+... +.+.-
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g-----~~vp~------------------ 57 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNG-----ELVPD------------------ 57 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTT-----SS--H------------------
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhh-----ccchH------------------
Confidence 67999999999999999 7999999999998887766666565555443211 11111
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeec------cc---cccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHH
Q 026952 85 GLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLF------EA---KMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDA 154 (230)
Q Consensus 85 ~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~------e~---~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~ 154 (230)
..+...+...+... ... ..+|+|| |-.. +. ......+.+|++++|.+++.+|+.. .+.+.+
T Consensus 58 ----~~v~~ll~~~l~~~-~~~-~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~---d~~~~i 128 (151)
T PF00406_consen 58 ----ELVIELLKERLEQP-PCN-RGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ---DNEEVI 128 (151)
T ss_dssp ----HHHHHHHHHHHHSG-GTT-TEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT---GSHHHH
T ss_pred ----HHHHHHHHHHHhhh-ccc-ceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc---CCHHHH
Confidence 11111122222211 123 3457775 4221 11 0122357899999999999999986 567788
Q ss_pred HHHHHhc
Q 026952 155 RNRINAQ 161 (230)
Q Consensus 155 ~~r~~~~ 161 (230)
.+|++.+
T Consensus 129 ~~Rl~~y 135 (151)
T PF00406_consen 129 KKRLEEY 135 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887644
No 111
>PRK13974 thymidylate kinase; Provisional
Probab=99.24 E-value=2e-10 Score=92.26 Aligned_cols=71 Identities=8% Similarity=0.082 Sum_probs=45.8
Q ss_pred CCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh-cCCccccc-ccCC-EEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 126 TKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA-QMPLDIKR-NNAD-IVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 126 ~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~-~~~~~~~~-~~ad-~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
.|+++|+++|++++.+|+..|.....+.....+.. ..+....+ .... .+||++++++++.++|.+.+....
T Consensus 135 pd~~i~ld~~~~~~~~R~~~R~dD~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~~ 208 (212)
T PRK13974 135 PDLTFFLEISVEESIRRRKNRKPDRIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLNNF 208 (212)
T ss_pred CCEEEEEeCCHHHHHHHHHhcccCchhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999988754322221111211 11211111 1223 368999999999999999887643
No 112
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.24 E-value=3e-10 Score=95.02 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=45.3
Q ss_pred eEEEEEcCHHHHHHHHHhhC-CCC--H-HHHHHHHHh-cCCcccccccCCEEEeCCC-CHHHHHHHHHHHHHH
Q 026952 128 PIVVVWVDPDTQLQRLMARD-RTS--E-EDARNRINA-QMPLDIKRNNADIVINNTG-TLDDLNEQVRKVLFE 194 (230)
Q Consensus 128 ~vi~l~~~~~~~~~Rl~~R~-~~~--~-~~~~~r~~~-~~~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~ 194 (230)
.+|||+++++++.+|+.++. ..+ . .+....+.. ....++.++.||++|||++ +++++.++|.+.+..
T Consensus 88 ~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 88 RVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred EEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEECCCCCHHHHHHHHHHHHhc
Confidence 46899999999999997532 111 0 112221221 1234556677999999987 899999999998854
No 113
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.23 E-value=1.3e-10 Score=98.04 Aligned_cols=38 Identities=32% Similarity=0.358 Sum_probs=33.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hC-CCcEEehhhhhHHh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-AN-DVPVVDADIIARDV 38 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~-g~~~i~~d~~~~~~ 38 (230)
|++|++.|+|||||||+|+.|+ ++ ++.+++.|.+.+.+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~ 41 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSL 41 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHh
Confidence 4789999999999999999999 56 89999999886543
No 114
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.23 E-value=7e-11 Score=90.64 Aligned_cols=145 Identities=23% Similarity=0.285 Sum_probs=80.5
Q ss_pred CCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHHHHHhhhh
Q 026952 10 ISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQLLNGLLA 88 (230)
Q Consensus 10 ~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 88 (230)
|||||||+++.|+ ++|++++++|.+..... +....++....|++.|+ ....
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~---g~si~~i~~~~G~~~fr---------------------~~E~---- 52 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT---GMSISEIFAEEGEEAFR---------------------ELES---- 52 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH---TSHHHHHHHHHHHHHHH---------------------HHHH----
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh---CCcHHHHHHcCChHHHH---------------------HHHH----
Confidence 7999999999999 69999999999876543 22233333333322210 0000
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEe--eeeccccc--cccCCeEEEEEcCHHHHHHHHHhhCCC----CHHH---HHHH
Q 026952 89 PYISLGIFMEVLKLWIKGCKVIVLDV--PLLFEAKM--DKWTKPIVVVWVDPDTQLQRLMARDRT----SEED---ARNR 157 (230)
Q Consensus 89 p~v~~~~~~~~~~~~~~~~~~viie~--~~~~e~~~--~~~~d~vi~l~~~~~~~~~Rl~~R~~~----~~~~---~~~r 157 (230)
.+. ... ....+.||.-| ....+... -+....+|||++|+++..+|+..+... .... ....
T Consensus 53 -----~~l---~~l-~~~~~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~ 123 (158)
T PF01202_consen 53 -----EAL---REL-LKENNCVIACGGGIVLKEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILEL 123 (158)
T ss_dssp -----HHH---HHH-HCSSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHH
T ss_pred -----HHH---HHH-hccCcEEEeCCCCCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHH
Confidence 011 111 12224444442 23333221 122467899999999999999887641 1111 1222
Q ss_pred HHhcCCcccccccCCEEEeCCCCH-HHHHHHHHHHHH
Q 026952 158 INAQMPLDIKRNNADIVINNTGTL-DDLNEQVRKVLF 193 (230)
Q Consensus 158 ~~~~~~~~~~~~~ad~iI~n~~~~-~~v~~~i~~~l~ 193 (230)
+... ...+...+++++++++.. +++.++|.+.++
T Consensus 124 ~~~R--~~~Y~~~a~~~v~~~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 124 LFER--EPLYEQAADIVVDTDGSPPEEIAEEILEFLK 158 (158)
T ss_dssp HHHH--HHHHHHHSSEEEETSSCHHHHHHHHHHHHH-
T ss_pred HHHH--HHHHHhcCeEEEeCCCCCHHHHHHHHHHHhC
Confidence 2211 112334578899988866 899998888764
No 115
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.23 E-value=4.5e-12 Score=99.54 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=46.4
Q ss_pred CeEEEEEcCH-HHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 127 KPIVVVWVDP-DTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 127 d~vi~l~~~~-~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
..+||+.+|. +.+.+|+..|+..+.+.+..|+............+|++|.|+ ++++..++|.++++.
T Consensus 115 ~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~~fd~vi~n~-~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 115 PIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYNEFDYVIVND-DLEEAVKELKEIIEQ 182 (183)
T ss_dssp EEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGGGSSEEEECS-SHHHHHHHHHHHHHH
T ss_pred ceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhhcCCEEEECc-CHHHHHHHHHHHHHh
Confidence 3578998764 666777766654556677777654322222222389999987 899999999999875
No 116
>PRK13975 thymidylate kinase; Provisional
Probab=99.21 E-value=9.6e-10 Score=87.02 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=45.0
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCC--CCHHHHHHHH----HhcCCccccc-ccCCEEEeCC-CCHHHHHHHHHHHHHH
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDR--TSEEDARNRI----NAQMPLDIKR-NNADIVINNT-GTLDDLNEQVRKVLFE 194 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~--~~~~~~~~r~----~~~~~~~~~~-~~ad~iI~n~-~~~~~v~~~i~~~l~~ 194 (230)
.+|+++|+++|++++.+|+.+|+. ....+...+. .......... ..+..+||++ .+++++.++|.+.+..
T Consensus 113 ~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~ 190 (196)
T PRK13975 113 KPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKD 190 (196)
T ss_pred CCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999998852 2222222222 2111111111 2345688986 6999999999887754
No 117
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=5e-10 Score=83.59 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=91.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
.|++.|.+||||||++++|. ++|+.+++.|++... +-.+++...+ -++|.+++.
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~----------~NveKM~~Gi---------------pLnD~DR~p 68 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPP----------ANVEKMTQGI---------------PLNDDDRWP 68 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCcccccccCCCH----------HHHHHHhcCC---------------CCCcccccH
Confidence 68999999999999999999 799999999999543 1123332222 235566677
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeee------ecccccc----ccCC----eEEEEEcCHHHHHHHHHhhC
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPL------LFEAKMD----KWTK----PIVVVWVDPDTQLQRLMARD 147 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~------~~e~~~~----~~~d----~vi~l~~~~~~~~~Rl~~R~ 147 (230)
|+..+-. .+.+...++..+|+.-..+ +....+. ..++ .+|++.++.++..+|+..|.
T Consensus 69 WL~~i~~---------~~~~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~ 139 (191)
T KOG3354|consen 69 WLKKIAV---------ELRKALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRK 139 (191)
T ss_pred HHHHHHH---------HHHHHhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcc
Confidence 7765432 1222223455554443321 1111110 0122 36889999999999999998
Q ss_pred C--CCHHHHHHHHHhcCCcccccccCCEE-EeCC-CCHHHHHHHHHHHHHH
Q 026952 148 R--TSEEDARNRINAQMPLDIKRNNADIV-INNT-GTLDDLNEQVRKVLFE 194 (230)
Q Consensus 148 ~--~~~~~~~~r~~~~~~~~~~~~~ad~i-I~n~-~~~~~v~~~i~~~l~~ 194 (230)
| .+.+-++.+++-- +. +.....|++ |+-. .++++....|.+.+..
T Consensus 140 gHFMp~~lleSQf~~L-E~-p~~~e~div~isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 140 GHFMPADLLESQFATL-EA-PDADEEDIVTISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred cccCCHHHHHHHHHhc-cC-CCCCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence 7 3444444444321 11 111122543 4433 6888888888776653
No 118
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.21 E-value=2.2e-10 Score=86.83 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARD 37 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~ 37 (230)
+|+|+|+|||||||+|+.|+ .++..+++.|.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence 58999999999999999999 589999999988653
No 119
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.20 E-value=4.4e-11 Score=92.87 Aligned_cols=133 Identities=17% Similarity=0.164 Sum_probs=80.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh--CCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFKA--NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~--~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
+|||+|.+.|||||+|+.|.+ .|+.+|+.|++++...+... ... |..-++--..++...+.+.+.
T Consensus 6 ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v------~~~-n~~~wd~~esLdm~~fl~~ia------ 72 (225)
T KOG3308|consen 6 IVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEV------DYN-NIDNWDLLESLDMEKFLEKIA------ 72 (225)
T ss_pred EEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhc------ccC-CcchhcchhhhhHHHHHHHHH------
Confidence 799999999999999999994 58899999999886543210 000 111122223455555543221
Q ss_pred HHHHh------hhhHHHHHHHHHHH-HHH--HhcCCcEEEEEeeeeccc-cccccCCeEEEEEcCHHHHHHHHHhhCC
Q 026952 81 QLLNG------LLAPYISLGIFMEV-LKL--WIKGCKVIVLDVPLLFEA-KMDKWTKPIVVVWVDPDTQLQRLMARDR 148 (230)
Q Consensus 81 ~~l~~------~~~p~v~~~~~~~~-~~~--~~~~~~~viie~~~~~e~-~~~~~~d~vi~l~~~~~~~~~Rl~~R~~ 148 (230)
.++.. ...-.+.....+.. ... .....+++++||..++.- .+...+|..+++..|.+++.+|...|.+
T Consensus 73 ~~l~~~~~~~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt~ 150 (225)
T KOG3308|consen 73 TWLDSRHNAPEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREARTY 150 (225)
T ss_pred HHhcCccccchHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhccccc
Confidence 11111 00001111000000 000 113456899998887754 3556789999999999999999999976
No 120
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.19 E-value=7.5e-10 Score=91.12 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=44.9
Q ss_pred eEEEEEcCHHHHHHHHHhhCC-CCHHHHHHHHHhcC-Cccc-ccccCCEEEeCCC--CHHHHHHHHHHHHHH
Q 026952 128 PIVVVWVDPDTQLQRLMARDR-TSEEDARNRINAQM-PLDI-KRNNADIVINNTG--TLDDLNEQVRKVLFE 194 (230)
Q Consensus 128 ~vi~l~~~~~~~~~Rl~~R~~-~~~~~~~~r~~~~~-~~~~-~~~~ad~iI~n~~--~~~~v~~~i~~~l~~ 194 (230)
.+||+++|.+++.+|...|+. .+.+.+...+.+.. +... ....++++|++++ +.+++.++|.+.+..
T Consensus 98 ~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 98 IIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred EEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 578999999999999998865 34444444444332 2221 2245788898876 567888888876654
No 121
>PRK13976 thymidylate kinase; Provisional
Probab=99.18 E-value=2.1e-09 Score=86.16 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=43.4
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCCCC--HHHHHHHHHhc-CCcccccccCCEEEeC---CCC---HHHHHHHHHHHHHHh
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDRTS--EEDARNRINAQ-MPLDIKRNNADIVINN---TGT---LDDLNEQVRKVLFEI 195 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~~~--~~~~~~r~~~~-~~~~~~~~~ad~iI~n---~~~---~~~v~~~i~~~l~~~ 195 (230)
.+|+++||++|+++..+|+.+| +.. ..+..++.... ..........-.+|++ +++ ++++.++|.+++...
T Consensus 124 ~PDl~i~Ldv~~e~a~~Ri~~~-~~e~~~~~~l~~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~ 202 (209)
T PRK13976 124 YPDITFVLDIDIELSLSRADKN-GYEFMDLEFYDKVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAV 202 (209)
T ss_pred CCCEEEEEeCCHHHHHHHhccc-chhcccHHHHHHHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHH
Confidence 3699999999999999998654 321 12333333221 1121111112235665 335 999999999988766
Q ss_pred h
Q 026952 196 K 196 (230)
Q Consensus 196 ~ 196 (230)
.
T Consensus 203 ~ 203 (209)
T PRK13976 203 T 203 (209)
T ss_pred H
Confidence 5
No 122
>PRK07933 thymidylate kinase; Validated
Probab=99.18 E-value=7.5e-10 Score=89.01 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=43.4
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCCCC----------HHHHHHHHHhcC-CcccccccCC-EEEeCCCCHHHHHHHHHHHH
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDRTS----------EEDARNRINAQM-PLDIKRNNAD-IVINNTGTLDDLNEQVRKVL 192 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~~~----------~~~~~~r~~~~~-~~~~~~~~ad-~iI~n~~~~~~v~~~i~~~l 192 (230)
.+|+++||++|+++..+|+.+|++.. ..+...++.... .......... .+||++.+++++.++|.+.+
T Consensus 132 ~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 132 VPDLQVLLDVPVELAAERARRRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred CCCEEEEecCCHHHHHHHHHhhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 46999999999999999999885320 122333332211 1111111123 46899899999999998765
No 123
>PLN02772 guanylate kinase
Probab=99.15 E-value=1.8e-10 Score=99.07 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=49.2
Q ss_pred eEEEEEc-CHHHHHHHHHhhCCCCHHHHHHHHHhcC-Ccc--cccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 128 PIVVVWV-DPDTQLQRLMARDRTSEEDARNRINAQM-PLD--IKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 128 ~vi~l~~-~~~~~~~Rl~~R~~~~~~~~~~r~~~~~-~~~--~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
.+||+.. +.+++.+|+.+|+..+++++++|++... +++ .....+|++|.|+ ++++..+++.+++..
T Consensus 249 v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~~~~~fD~vIvND-dLe~A~~~L~~iL~~ 318 (398)
T PLN02772 249 IFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIFDHILYND-NLEECYKNLKKLLGL 318 (398)
T ss_pred EEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCCCEEEECC-CHHHHHHHHHHHHhh
Confidence 4455544 4588899999997788999999987542 222 1234689999998 899999999998864
No 124
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.14 E-value=2.4e-10 Score=85.77 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=33.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVL 39 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~ 39 (230)
+|.++|+|||||||+++.|+ ..++.+++.|.+...+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHc
Confidence 68999999999999999999 78899999999876654
No 125
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.13 E-value=5.5e-10 Score=100.00 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=32.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARD 37 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~ 37 (230)
.|+|+|++||||||+++.|+ .+|+.++++|....+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~ 37 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIER 37 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHH
Confidence 68999999999999999999 699999999988765
No 126
>PLN02924 thymidylate kinase
Probab=99.13 E-value=4.1e-09 Score=85.04 Aligned_cols=70 Identities=9% Similarity=0.260 Sum_probs=44.9
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCC-CCHHHHHHHHHhcC-CcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhC
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDR-TSEEDARNRINAQM-PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 197 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~-~~~~~~~~r~~~~~-~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~ 197 (230)
..|+++||++|+++..+|...+.. ....+..+++.... ... ...-.+||++.+++++.++|.+.+.....
T Consensus 135 ~PDlvi~Ld~~~~~a~~R~~~~~~~~E~~~~~~rv~~~Y~~la---~~~~~vIDa~~sieeV~~~I~~~I~~~l~ 206 (220)
T PLN02924 135 APDLVLYLDISPEEAAERGGYGGERYEKLEFQKKVAKRFQTLR---DSSWKIIDASQSIEEVEKKIREVVLDTVQ 206 (220)
T ss_pred CCCEEEEEeCCHHHHHHHhccCccccccHHHHHHHHHHHHHHh---hcCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 369999999999999999653311 11223333433221 111 11224679999999999999998876444
No 127
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.12 E-value=2.8e-10 Score=83.04 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIA 35 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~ 35 (230)
+|+|+|+|||||||+|+.|+ ++|+.+++.|++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 68999999999999999999 5799999999953
No 128
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.12 E-value=3.1e-09 Score=81.91 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=44.3
Q ss_pred eEEEEEcCHHHHHHHHHhhCCC--CHHHHHHHHHhcCCcccccccCC-EEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 128 PIVVVWVDPDTQLQRLMARDRT--SEEDARNRINAQMPLDIKRNNAD-IVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 128 ~vi~l~~~~~~~~~Rl~~R~~~--~~~~~~~r~~~~~~~~~~~~~ad-~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
..+|++||++++.+|+.+|.+. +.+.+...+....+..+. + .+ +++|++.+++++.+++...++..+
T Consensus 93 ~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~ep~~~~-e-~~~~~id~~~~~~~~~~~~~~~~~~~~ 162 (163)
T PRK11545 93 SFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGAD-E-TDVLVVDIDQPLEGVVASTIEVIKKGK 162 (163)
T ss_pred EEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcCCCCCC-C-CCEEEEeCCCCHHHHHHHHHHHHHHhc
Confidence 4799999999999999999752 233333333222221110 1 23 568999998999999888886543
No 129
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.12 E-value=1.5e-09 Score=87.60 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=38.8
Q ss_pred CCeEEEEEcCHHHHHHHHHhhCCCCHH----HHHHHHHhcC-Cc-cc-ccccCCE-EEeCC--CCHHHHHHHHHH
Q 026952 126 TKPIVVVWVDPDTQLQRLMARDRTSEE----DARNRINAQM-PL-DI-KRNNADI-VINNT--GTLDDLNEQVRK 190 (230)
Q Consensus 126 ~d~vi~l~~~~~~~~~Rl~~R~~~~~~----~~~~r~~~~~-~~-~~-~~~~ad~-iI~n~--~~~~~v~~~i~~ 190 (230)
.|++|||++|++++.+|+.+|+...+. +...++.... .. .+ ....+++ ++|++ ++++++.++|..
T Consensus 143 Pd~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~~e~i~~~I~~ 217 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence 589999999999999999998643211 1112222111 11 11 1234565 56766 677777777654
No 130
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.11 E-value=8.5e-09 Score=80.46 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=46.2
Q ss_pred eEEEEEcCHHHHHHHHHhhCC--CCHHHHHHHHHhcCCcccccccCC-EEEeCCCCHHHHHHHHHHHHHHhhCC
Q 026952 128 PIVVVWVDPDTQLQRLMARDR--TSEEDARNRINAQMPLDIKRNNAD-IVINNTGTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 128 ~vi~l~~~~~~~~~Rl~~R~~--~~~~~~~~r~~~~~~~~~~~~~ad-~iI~n~~~~~~v~~~i~~~l~~~~~~ 198 (230)
..||+++|++++.+|+.+|.+ .+.+.+..+++...+. .....+ +.+|++.+++++.+++...++.....
T Consensus 101 ~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e~~--~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 172 (176)
T PRK09825 101 HFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALERP--CADEHDIARIDVNHDIENVTEQCRQAVQAFRQA 172 (176)
T ss_pred EEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcCCC--CCCcCCeEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999965 3344444443322111 111134 47899999888888888887765544
No 131
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.10 E-value=2.4e-09 Score=84.18 Aligned_cols=62 Identities=19% Similarity=0.391 Sum_probs=39.3
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCC-C--CH--HHHHHHHHhcC-CcccccccCC-EEEeCCCCHHHHHHHH
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDR-T--SE--EDARNRINAQM-PLDIKRNNAD-IVINNTGTLDDLNEQV 188 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~-~--~~--~~~~~r~~~~~-~~~~~~~~ad-~iI~n~~~~~~v~~~i 188 (230)
.+|+++|+++|+++..+|+.+|++ . .. .+...++.... .... .... ++||++.+++++.++|
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y~~l~~--~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREAYLELAK--DPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHHHHHHHH--TTTTEEEEETTS-HHHHHHHH
T ss_pred CCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHc--CCCCEEEEECCCCHHHHHhhC
Confidence 569999999999999999999976 1 11 12222222111 1111 1233 5789999999999886
No 132
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.09 E-value=2.6e-09 Score=84.71 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=32.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVL 39 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~ 39 (230)
+++|+|+|.|||||||+|+.|+ ++|+.++...++.++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~ 42 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFL 42 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHH
Confidence 3689999999999999999999 68988777766666544
No 133
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=99.09 E-value=1.6e-10 Score=93.07 Aligned_cols=151 Identities=23% Similarity=0.274 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|.+|.|+|.|||||||..+.|.+.|+.++ |++...+. ..+.+.. ...++.+++-++.-.+-+ .+..
T Consensus 1 m~lvIVTGlSGAGKsvAl~~lEDlGyycv--DNLPp~Ll-------p~~~~~~----~~~~~~~~kvAv~iDiRs-~~~~ 66 (286)
T COG1660 1 MRLVIVTGLSGAGKSVALRVLEDLGYYCV--DNLPPQLL-------PKLADLM----LTLESRITKVAVVIDVRS-REFF 66 (286)
T ss_pred CcEEEEecCCCCcHHHHHHHHHhcCeeee--cCCCHHHH-------HHHHHHH----hhcccCCceEEEEEeccc-chhH
Confidence 78999999999999999999999999888 66643322 1121110 001111122111111100 0111
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHh-hCC--CCHHH-HHH
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMA-RDR--TSEED-ARN 156 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~-R~~--~~~~~-~~~ 156 (230)
..+...+ ..+. ..+ ++ .--++|++|+.+++.+|..+ |+. .+... +..
T Consensus 67 ~~l~~~l---------~~l~---~~~-~~----------------~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~ 117 (286)
T COG1660 67 GDLEEVL---------DELK---DNG-DI----------------DPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLE 117 (286)
T ss_pred HHHHHHH---------HHHH---hcC-CC----------------CceEEEEECchhHHHHHHhhhhhcCCCCccCcHHH
Confidence 1111110 0000 011 11 12368999999999999986 332 11111 222
Q ss_pred HHHhcC-CcccccccCCEEEeCCC-CHHHHHHHHHHHHHH
Q 026952 157 RINAQM-PLDIKRNNADIVINNTG-TLDDLNEQVRKVLFE 194 (230)
Q Consensus 157 r~~~~~-~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~ 194 (230)
-++.+. -..+.+..||.+||++. ++.++.+.|...+..
T Consensus 118 ~I~~ERelL~pLk~~A~~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 118 AIAKERELLAPLREIADLVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred HHHHHHHHHHHHHHHhhhEeecccCCHHHHHHHHHHHHcc
Confidence 233222 25677888999999987 899999999998874
No 134
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.08 E-value=2e-09 Score=84.23 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=37.3
Q ss_pred CeEEEEEcCHHHHHHHHHhhCC-CCHHHHHHHHHhcCC-ccc-ccccCCEEEeCCCCHHHHHHHHHH
Q 026952 127 KPIVVVWVDPDTQLQRLMARDR-TSEEDARNRINAQMP-LDI-KRNNADIVINNTGTLDDLNEQVRK 190 (230)
Q Consensus 127 d~vi~l~~~~~~~~~Rl~~R~~-~~~~~~~~r~~~~~~-~~~-~~~~ad~iI~n~~~~~~v~~~i~~ 190 (230)
..+||+.+|++++.+|=.+|+. .+++.+.+-+.+..+ ... ....+-++|+++....+....+..
T Consensus 103 ~ciIyl~~plDtc~rrN~ergepip~Evl~qly~RfEePn~~~rWDspll~id~~d~~t~~IDfies 169 (261)
T COG4088 103 WCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRFEEPNPDRRWDSPLLVIDDSDVSTEVIDFIES 169 (261)
T ss_pred eEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhhcCCCCCccccCceEEEecccccccchhHHHH
Confidence 4689999999999999877764 455555555555432 211 123334667644333333333333
No 135
>PRK07261 topology modulation protein; Provisional
Probab=99.07 E-value=5.9e-10 Score=86.59 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
+.|+|.|+|||||||+|+.|+ .+|+++++.|.+... ++ +. ..+.+.+ .
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~---~~---------------~~---~~~~~~~----------~ 49 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ---PN---------------WQ---ERDDDDM----------I 49 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec---cc---------------cc---cCCHHHH----------H
Confidence 468999999999999999999 689999999877421 00 00 0011111 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeec---cccccccCCeEEEEEcCHHHHHHHHHhhC
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLF---EAKMDKWTKPIVVVWVDPDTQLQRLMARD 147 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~---e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~ 147 (230)
. .+.... .+.. .|+|+.... +..+ ..+|.+||+++|..++..|+.+|.
T Consensus 50 ~----------------~~~~~~-~~~~-wIidg~~~~~~~~~~l-~~ad~vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 50 A----------------DISNFL-LKHD-WIIDGNYSWCLYEERM-QEADQIIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred H----------------HHHHHH-hCCC-EEEcCcchhhhHHHHH-HHCCEEEEEcCCHHHHHHHHHHHH
Confidence 0 011111 2334 688876433 2222 357999999999999999998884
No 136
>PRK12338 hypothetical protein; Provisional
Probab=99.05 E-value=1.2e-08 Score=85.99 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=31.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVL 39 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~ 39 (230)
.+|+|+|+|||||||+|+.|+ ++|+.++..+++.++..
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~ 43 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVV 43 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHH
Confidence 589999999999999999999 68998885555555543
No 137
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.04 E-value=5e-09 Score=83.30 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-C---C--CcEEehhhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-N---D--VPVVDADIIA 35 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~---g--~~~i~~d~~~ 35 (230)
.+|+|+|++||||||+++.|+. + | ..+++.|.+.
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 5799999999999999999983 2 3 4566666664
No 138
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.04 E-value=1.3e-09 Score=79.92 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCcEEEEEeeeeccccccccCCeE-EEEEcCHHHHHHHHHhhCCCCHHHHH
Q 026952 106 GCKVIVLDVPLLFEAKMDKWTKPI-VVVWVDPDTQLQRLMARDRTSEEDAR 155 (230)
Q Consensus 106 ~~~~viie~~~~~e~~~~~~~d~v-i~l~~~~~~~~~Rl~~R~~~~~~~~~ 155 (230)
....+++|+........ ...+.. |+|+||++++.+|+.+|.........
T Consensus 72 ~~~~~iid~~~~~~~~~-~~~~~~~i~L~~~~e~~~~R~~~R~~~~~~~~~ 121 (129)
T PF13238_consen 72 KGRNIIIDGILSNLELE-RLFDIKFIFLDCSPEELRKRLKKRGRKEEKKSE 121 (129)
T ss_dssp TTSCEEEEESSEEECET-TEEEESSEEEE--HHHHHHHHHCTTTSCHHHHH
T ss_pred cCCcEEEecccchhccc-ccceeeEEEEECCHHHHHHHHHhCCCCCCCchh
Confidence 44556788543322111 111222 99999999999999999776655443
No 139
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.04 E-value=1e-08 Score=80.77 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
++.|+|.|+.|+||||+|+.|+ ++|..++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~ 34 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFY 34 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceee
Confidence 4689999999999999999999 67876544
No 140
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.01 E-value=1.8e-08 Score=76.37 Aligned_cols=161 Identities=17% Similarity=0.231 Sum_probs=85.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hC-CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-AN-DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSS 78 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~-g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (230)
|++++|+|-||+||||+++.+. .. ++.+++.+++..+....-+ ..-+++.+.... .+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~g------------------lve~rD~~Rklp---~e 62 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKG------------------LVEHRDEMRKLP---LE 62 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhC------------------CcccHHHHhcCC---HH
Confidence 6799999999999999999998 45 7788998888766542111 011333333221 11
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecccc------ccc------cCCeEEEEEcCHHHHHHHHHhh
Q 026952 79 KRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAK------MDK------WTKPIVVVWVDPDTQLQRLMAR 146 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~------~~~------~~d~vi~l~~~~~~~~~Rl~~R 146 (230)
.... ++....+++.+. ... +++|........ +.. ..|.++.+.++|+....|..+.
T Consensus 63 ~Q~~--------lq~~Aa~rI~~~---~~~-iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D 130 (189)
T COG2019 63 NQRE--------LQAEAAKRIAEM---ALE-IIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRD 130 (189)
T ss_pred HHHH--------HHHHHHHHHHHh---hhc-eEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcc
Confidence 1011 111111222211 122 678853332221 111 2478889999998887776532
Q ss_pred -----CCCCHHHHHHHHH--hcCC--cccccccCCEEEeC-CCCHHHHHHHHHHHHHH
Q 026952 147 -----DRTSEEDARNRIN--AQMP--LDIKRNNADIVINN-TGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 147 -----~~~~~~~~~~r~~--~~~~--~~~~~~~ad~iI~n-~~~~~~v~~~i~~~l~~ 194 (230)
+-.+.+++....+ +... ........-.|+.| ++.++....+|.+++..
T Consensus 131 ~~r~Rd~es~e~i~eHqe~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 131 SRRDRDVESVEEIREHQEMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 2245555544322 1111 11111212235544 56888888888887753
No 141
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.00 E-value=4.6e-08 Score=74.89 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCCCc--EEehhhhhHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADIIARDV 38 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g~~--~i~~d~~~~~~ 38 (230)
.+|.++|.|||||||+|++|. +.|.. +++-|.+.+.+
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL 66 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGL 66 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcc
Confidence 478999999999999999998 35654 56667775543
No 142
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.99 E-value=3.4e-09 Score=82.22 Aligned_cols=159 Identities=13% Similarity=0.071 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hC--CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcc-cCCCCccCHHHHHhhhcCCh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AN--DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDI-LLPNGEVDRSKLGQIVFSDS 77 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~--g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 77 (230)
++|++.|+|.|||||+|+.|. .+ .+-+++.|.+...+..... . -+..+ +..++... . +
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~-------~-~~~g~~~~~~~~~~-~---------~ 63 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRY-------R-PGDGLEPAGDRPDG-G---------P 63 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGG-------T-STTSEEEETTSEEE-----------H
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccc-------c-CCccccccccCCch-h---------H
Confidence 589999999999999999999 44 3457888998764321100 0 00000 00000000 0 0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccc----cccc---cCC-eEEEEEcCHHHHHHHHHhhCCC
Q 026952 78 SKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEA----KMDK---WTK-PIVVVWVDPDTQLQRLMARDRT 149 (230)
Q Consensus 78 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~----~~~~---~~d-~vi~l~~~~~~~~~Rl~~R~~~ 149 (230)
. .+.+...+..-+..+...|. .||+|..+.... .+++ ..+ +.|-+.||.+++.+|-..|+..
T Consensus 64 -~--------~~~~~~~~~~~iaa~a~aG~-~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR 133 (174)
T PF07931_consen 64 -L--------FRRLYAAMHAAIAAMARAGN-NVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDR 133 (174)
T ss_dssp -H--------HHHHHHHHHHHHHHHHHTT--EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSS
T ss_pred -H--------HHHHHHHHHHHHHHHHhCCC-CEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCc
Confidence 0 11111111222222223454 467774332221 1211 123 4577999999999999888643
Q ss_pred CHHHHHHHHHhcCCcccccccCCEEEeCCC-CHHHHHHHHHHHH
Q 026952 150 SEEDARNRINAQMPLDIKRNNADIVINNTG-TLDDLNEQVRKVL 192 (230)
Q Consensus 150 ~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l 192 (230)
....+..+ ...-.....+|+.+|++. +++++.++|.+.+
T Consensus 134 ~~G~a~~q----~~~Vh~~~~YDleVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 134 PIGLAAWQ----AEHVHEGGRYDLEVDTSATSPEECAREILARL 173 (174)
T ss_dssp STTHHHHH----TTGGGTT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred chHHHHHH----HhhcccCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence 33322222 221222335789999987 8999999988754
No 143
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.98 E-value=4.4e-09 Score=81.87 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh----CC--CcEEehhhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA----ND--VPVVDADIIA 35 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~----~g--~~~i~~d~~~ 35 (230)
.+|+|+|+|||||||+|+.|+. .| +.+++.|.+.
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 5899999999999999999983 23 4567777664
No 144
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.92 E-value=1.3e-09 Score=88.90 Aligned_cols=132 Identities=19% Similarity=0.233 Sum_probs=77.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh-----CC---CcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCC---ccCHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKA-----ND---VPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNG---EVDRSKL 69 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~-----~g---~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~l 69 (230)
+.+|+|+|++|+||||.|+.|+. .+ ...+.+|.+..... ..+.- .....+| ..+...+
T Consensus 82 pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~---------~L~~~--glm~rKGfPeSyD~~~l 150 (283)
T COG1072 82 PFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNA---------VLDER--GLMARKGFPESYDVAAL 150 (283)
T ss_pred CEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHh---------Hhhhc--cccccCCCCccccHHHH
Confidence 36899999999999999999982 12 44788888754311 11110 1111122 2344444
Q ss_pred HhhhcCChHHHH-HHHhhhhHHHHHHHHHHHH--HHHhcCCcEEEEEeeeeccc--c---ccccCCeEEEEEcCHHHHHH
Q 026952 70 GQIVFSDSSKRQ-LLNGLLAPYISLGIFMEVL--KLWIKGCKVIVLDVPLLFEA--K---MDKWTKPIVVVWVDPDTQLQ 141 (230)
Q Consensus 70 ~~~~~~~~~~~~-~l~~~~~p~v~~~~~~~~~--~~~~~~~~~viie~~~~~e~--~---~~~~~d~vi~l~~~~~~~~~ 141 (230)
.+.+ ...+ -...+..|.+.+.+..... .......+++|+||..+... . ....+|+.||++++.+.+.+
T Consensus 151 l~fl----~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~ 226 (283)
T COG1072 151 LRFL----SDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEE 226 (283)
T ss_pred HHHH----HHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHH
Confidence 3322 1111 1112345665554433221 11224567899998755432 2 24567999999999999999
Q ss_pred HHHhhC
Q 026952 142 RLMARD 147 (230)
Q Consensus 142 Rl~~R~ 147 (230)
|+.+|.
T Consensus 227 wyi~Rf 232 (283)
T COG1072 227 RYIERF 232 (283)
T ss_pred HHHHHH
Confidence 999985
No 145
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.90 E-value=4e-08 Score=77.09 Aligned_cols=34 Identities=38% Similarity=0.489 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh----CC--CcEEehhhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA----ND--VPVVDADIIA 35 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~----~g--~~~i~~d~~~ 35 (230)
.+|+|+|++||||||+++.|.. .| ..+++.|.+.
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 6899999999999999999992 24 3456666554
No 146
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.90 E-value=2.5e-08 Score=90.92 Aligned_cols=147 Identities=17% Similarity=0.131 Sum_probs=79.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCC------cEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcC
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDV------PVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFS 75 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~------~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 75 (230)
+|+|+|.|||||||+|+.|+ .++. .+++.|.+.+.+. +...|+
T Consensus 394 ~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~--------------ge~~f~---------------- 443 (568)
T PRK05537 394 TVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS--------------SELGFS---------------- 443 (568)
T ss_pred EEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc--------------CCCCCC----------------
Confidence 78999999999999999999 4553 6788876643221 111111
Q ss_pred ChHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccc---c----ccccCC-eEEEEEcCHHHHHHHHHhhC
Q 026952 76 DSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEA---K----MDKWTK-PIVVVWVDPDTQLQRLMARD 147 (230)
Q Consensus 76 ~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~---~----~~~~~d-~vi~l~~~~~~~~~Rl~~R~ 147 (230)
+.+.......+ ....... .+.+..+|++.....+. . +..... .+||+++|.+++.+|.. |+
T Consensus 444 ~~er~~~~~~l---------~~~a~~v-~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~r-r~ 512 (568)
T PRK05537 444 KEDRDLNILRI---------GFVASEI-TKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDR-KG 512 (568)
T ss_pred HHHHHHHHHHH---------HHHHHHH-HhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhcc-cc
Confidence 11110000000 0000111 12345677775333221 1 122223 47999999999999963 21
Q ss_pred CC---CHHHHHHHHHhcCCccccc--ccCCEEEeCCC-CHHHHHHHHHHHHH
Q 026952 148 RT---SEEDARNRINAQMPLDIKR--NNADIVINNTG-TLDDLNEQVRKVLF 193 (230)
Q Consensus 148 ~~---~~~~~~~r~~~~~~~~~~~--~~ad~iI~n~~-~~~~v~~~i~~~l~ 193 (230)
-. ..+.+...+. ...+++ ..||++||+++ +++++.++|.+.++
T Consensus 513 Ll~~~~~~~i~~l~~---~R~~yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~ 561 (568)
T PRK05537 513 LYAKAREGKIKGFTG---ISDPYEPPANPELVIDTTNVTPDECAHKILLYLE 561 (568)
T ss_pred ccccchhchhhcccc---ccccccCCCCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 11 1112211111 122233 46899999886 88888888887765
No 147
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.84 E-value=6e-08 Score=76.60 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-CCCcEE
Q 026952 3 IVGLTGGISSGKSTVSNLFKA-NDVPVV 29 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~-~g~~~i 29 (230)
+|+|.|++||||||+++.|++ +|+.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 589999999999999999994 665444
No 148
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.75 E-value=2.1e-07 Score=77.85 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCc-EEehhhhhH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVP-VVDADIIAR 36 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~-~i~~d~~~~ 36 (230)
+++|+|+|++||||||+|+.|+ ++|.. ++++|.+.+
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re 129 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIRE 129 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH
Confidence 3589999999999999999999 68886 788888753
No 149
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.73 E-value=3.9e-07 Score=75.77 Aligned_cols=135 Identities=19% Similarity=0.161 Sum_probs=61.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh----CCC--cEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhc
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKA----NDV--PVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVF 74 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~----~g~--~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (230)
|++|+|+|.|||||||+|+.|.+ .+. .+++.+.+... . ..|. +
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~---~--------------~~y~-~------------- 49 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGID---R--------------NDYA-D------------- 49 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-T---T--------------SSS----------------
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccc---h--------------hhhh-c-------------
Confidence 89999999999999999999983 344 34554444310 0 0010 0
Q ss_pred CChHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccc-cc--------cccCCeEEEEEcCHHHHHHHHHh
Q 026952 75 SDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEA-KM--------DKWTKPIVVVWVDPDTQLQRLMA 145 (230)
Q Consensus 75 ~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~-~~--------~~~~d~vi~l~~~~~~~~~Rl~~ 145 (230)
+..-+. +...+.....+.. +...+||+|+...... .+ ....-.+||+.+|.+.+.+|=.+
T Consensus 50 --~~~Ek~--------~R~~l~s~v~r~l-s~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~ 118 (270)
T PF08433_consen 50 --SKKEKE--------ARGSLKSAVERAL-SKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSK 118 (270)
T ss_dssp --GGGHHH--------HHHHHHHHHHHHH-TT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHH
T ss_pred --hhhhHH--------HHHHHHHHHHHhh-ccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhc
Confidence 000000 1111112222222 3347889996543322 11 01123579999999999999888
Q ss_pred hCC---CCHHHHHHHHHhcC-Ccc-cccccCCEEEeC
Q 026952 146 RDR---TSEEDARNRINAQM-PLD-IKRNNADIVINN 177 (230)
Q Consensus 146 R~~---~~~~~~~~r~~~~~-~~~-~~~~~ad~iI~n 177 (230)
|.. ++.+.+..-..+.. |.. ......-+.+++
T Consensus 119 R~~~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~~ 155 (270)
T PF08433_consen 119 RPEPERYPEETIDDMIQRFEEPDPKNRWDSPLFTIDS 155 (270)
T ss_dssp TT-S--S-HHHHHHHHHH---TTSS-GGGS-SEEEE-
T ss_pred cCCCCCCCHHHHHHHHHHhcCCCCCCCccCCeEEEec
Confidence 863 55555544433322 222 123344577774
No 150
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.72 E-value=8.5e-08 Score=72.94 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh----CCC--cEEehhhhhHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA----NDV--PVVDADIIARD 37 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~----~g~--~~i~~d~~~~~ 37 (230)
.+|.|+|.|||||||+|+.|.+ .|. .+++.|.+.+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 5799999999999999999982 454 46777776543
No 151
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.70 E-value=2.2e-07 Score=72.74 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=69.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
+|.|+|..|||++|+|+.|+ ++|+++++. ++..+..+..+. .....+.+.... ....+...+... ....
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~-~~~~~~~~~e~~-------~~~~~~~~~~~~-~~~~ 70 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGI-SEEEFEEFDEKK-------PFNSFLYDFFRG-MFPG 70 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT-------------SS-HH-------H--HH---HHS------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccC-CHHHHHHHhccc-------cCcchhhhhhcc-cccc
Confidence 69999999999999999999 799999988 444443322111 111111111000 000000000000 0000
Q ss_pred HH-HhhhhHHHHHHHHHHHHHHHhcCCcEEEEE--eeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHH
Q 026952 82 LL-NGLLAPYISLGIFMEVLKLWIKGCKVIVLD--VPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRI 158 (230)
Q Consensus 82 ~l-~~~~~p~v~~~~~~~~~~~~~~~~~~viie--~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~ 158 (230)
.. .......+.....+-+.+. .+.++.|++. +..++... ...+.|||.+|.+.+.+|+++|.+.+++++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~l-a~~~~~Vi~GR~a~~il~~~---~~~l~V~i~A~~~~Rv~ri~~~~~~s~~~A~~~i 146 (179)
T PF13189_consen 71 SFEDHPDDDKIFRAQSEIIREL-AAKGNCVIVGRCANYILRDI---PNVLHVFIYAPLEFRVERIMEREGISEEEAEKLI 146 (179)
T ss_dssp ---------HHHHHHHHHHHHH-HH---EEEESTTHHHHTTT----TTEEEEEEEE-HHHHHHHHHHHHT--HHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHH-hccCCEEEEecCHhhhhCCC---CCeEEEEEECCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 00 0000111111111111222 2344555555 23333221 1136799999999999999999998888877665
Q ss_pred Hhc-----------CC-cccccccCCEEEeCC
Q 026952 159 NAQ-----------MP-LDIKRNNADIVINNT 178 (230)
Q Consensus 159 ~~~-----------~~-~~~~~~~ad~iI~n~ 178 (230)
.+. .. .......+|++||++
T Consensus 147 ~~~D~~R~~~~~~~~~~~~~d~~~YDLvint~ 178 (179)
T PF13189_consen 147 KKEDKRRRAYYKYYTGIDWGDPSNYDLVINTS 178 (179)
T ss_dssp HHHHHHHHHHHHHH-SS-TTBGGG-SEEEEES
T ss_pred HHHHHHHHHHHHHHhCCCCCCchhceEEEeCc
Confidence 321 01 122345678888875
No 152
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.69 E-value=1.5e-07 Score=87.29 Aligned_cols=151 Identities=18% Similarity=0.186 Sum_probs=80.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hC-----CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhc
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-AN-----DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVF 74 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~-----g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (230)
+++|+++|.|||||||+|+.|+ ++ ++.+++.|.+...+.. + ..+
T Consensus 460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~-~-------------~~~---------------- 509 (632)
T PRK05506 460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNR-D-------------LGF---------------- 509 (632)
T ss_pred cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCC-C-------------CCC----------------
Confidence 3689999999999999999998 32 3567888887543221 0 000
Q ss_pred CChHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecccc---cccc---CC-eEEEEEcCHHHHHHHHHhhC
Q 026952 75 SDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAK---MDKW---TK-PIVVVWVDPDTQLQRLMARD 147 (230)
Q Consensus 75 ~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~---~~~~---~d-~vi~l~~~~~~~~~Rl~~R~ 147 (230)
++.....++..+. ...... ...+..++++.....+.. ++.. .. .++|+++|.+++.+|. .|
T Consensus 510 ~~~~r~~~~~~l~---------~~a~~~-~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~-~r- 577 (632)
T PRK05506 510 SDADRVENIRRVA---------EVARLM-ADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD-PK- 577 (632)
T ss_pred CHHHHHHHHHHHH---------HHHHHH-HhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC-Cc-
Confidence 1111111211110 000111 123346677754332211 1211 13 5799999999999993 23
Q ss_pred CCC----HHHHHHHHHhcCCcccccccCCEEEeCC-CCHHHHHHHHHHHHHH
Q 026952 148 RTS----EEDARNRINAQMPLDIKRNNADIVINNT-GTLDDLNEQVRKVLFE 194 (230)
Q Consensus 148 ~~~----~~~~~~r~~~~~~~~~~~~~ad~iI~n~-~~~~~v~~~i~~~l~~ 194 (230)
+.- .+++..-+....+.+ ....++++|+++ .+++++.++|.+.+..
T Consensus 578 ~L~~~~~~~~l~~l~~~r~~y~-~P~~a~~~Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 578 GLYAKARAGEIKNFTGIDSPYE-APENPELRLDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred chhhhccccccccccccccCCC-CCCCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence 211 111111111111111 124578999985 4889998888887754
No 153
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.64 E-value=3.6e-07 Score=78.09 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH-h----CC--CcEEehhhhhH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-A----ND--VPVVDADIIAR 36 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~----~g--~~~i~~d~~~~ 36 (230)
+++++|+|||||||+++.|+ . .| +.+++.|+++.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 46899999999999999887 2 33 35899999874
No 154
>COG0645 Predicted kinase [General function prediction only]
Probab=98.60 E-value=1.4e-06 Score=66.52 Aligned_cols=115 Identities=18% Similarity=0.130 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
+++.+.|.|||||||+|+.|+ .+|...|.+|...+.+.... ..+.- +.|..+. ..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p------~~~r~------~~g~ys~-~~----------- 57 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVP------EETRG------PAGLYSP-AA----------- 57 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCc------ccccC------CCCCCcH-HH-----------
Confidence 578899999999999999999 68999999999977654310 00000 1111111 11
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecccc---cc---cc--C-CeEEEEEcCHHHHHHHHHhhCC
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAK---MD---KW--T-KPIVVVWVDPDTQLQRLMARDR 148 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~---~~---~~--~-d~vi~l~~~~~~~~~Rl~~R~~ 148 (230)
...+++.+..........|.+ ||+|+-+..+.. .. +. . -..|.+.+|.+++..|+.+|.+
T Consensus 58 -------~~~vy~~l~~~A~l~l~~G~~-VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 58 -------TAAVYDELLGRAELLLSSGHS-VVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred -------HHHHHHHHHHHHHHHHhCCCc-EEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 111222333333334445654 678865433221 11 11 1 2457899999999999999987
No 155
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=2.7e-06 Score=68.76 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCc-EEehhhhhHHhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVP-VVDADIIARDVL 39 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~-~i~~d~~~~~~~ 39 (230)
.+|.|.|+||.||||+|..++ ++|+. ++++|.+ |+..
T Consensus 90 ~IILIGGasGVGkStIA~ElA~rLgI~~visTD~I-REvl 128 (299)
T COG2074 90 LIILIGGASGVGKSTIAGELARRLGIRSVISTDSI-REVL 128 (299)
T ss_pred eEEEecCCCCCChhHHHHHHHHHcCCceeecchHH-HHHH
Confidence 478999999999999999999 79996 5666654 4443
No 156
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.58 E-value=5.2e-07 Score=71.76 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hC---CCcEEehhhhhHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-AN---DVPVVDADIIARD 37 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~---g~~~i~~d~~~~~ 37 (230)
+.+|++.|+|||||||+++.+. .+ ++.+|+.|.+...
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 4689999999999999999998 44 6788999998644
No 157
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.57 E-value=8.7e-07 Score=72.43 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcE---Eehhhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPV---VDADIIA 35 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~---i~~d~~~ 35 (230)
++|++.|+.|||||++|+.|+ ++|+.+ +.+|.++
T Consensus 72 kvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iy 109 (393)
T KOG3877|consen 72 KVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIY 109 (393)
T ss_pred eEEEEeCCcccCchhHHHHHHHHhCCccccccccccee
Confidence 589999999999999999999 677654 4455554
No 158
>COG4639 Predicted kinase [General function prediction only]
Probab=98.56 E-value=5e-07 Score=67.81 Aligned_cols=118 Identities=20% Similarity=0.127 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
.++++.|+|||||||+++..-. ...+++.|++...+.... +++.. .+. ++
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~~-~~~~lsld~~r~~lg~~~---~~e~s----------qk~-~~--------------- 52 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENFL-QNYVLSLDDLRLLLGVSA---SKENS----------QKN-DE--------------- 52 (168)
T ss_pred eEEEEecCCCCchhHHHHHhCC-CcceecHHHHHHHhhhch---hhhhc----------ccc-HH---------------
Confidence 4789999999999999988552 355888888865432111 01100 000 00
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccc---------cCCeEEEEEcCHHHHHHHHHhhCC-CCH
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDK---------WTKPIVVVWVDPDTQLQRLMARDR-TSE 151 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~---------~~d~vi~l~~~~~~~~~Rl~~R~~-~~~ 151 (230)
. +.+.+.+.+.... ..+...|+|+..+..+..++ ..+..|++++|.+.+.+|-+.|.. .+.
T Consensus 53 ----~----~~~~l~~~l~qrl-~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~Rqv~~ 123 (168)
T COG4639 53 ----L----VWDILYKQLEQRL-RRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRERQVPE 123 (168)
T ss_pred ----H----HHHHHHHHHHHHH-HcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccchhCCH
Confidence 0 1111111111111 34567788876554433211 235678999999999999765554 445
Q ss_pred HHHHHHH
Q 026952 152 EDARNRI 158 (230)
Q Consensus 152 ~~~~~r~ 158 (230)
+.+..-.
T Consensus 124 ~VI~r~~ 130 (168)
T COG4639 124 EVIPRML 130 (168)
T ss_pred HHHHHHH
Confidence 4444333
No 159
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.54 E-value=2.8e-07 Score=69.90 Aligned_cols=34 Identities=35% Similarity=0.499 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh-C---CCc--EEehhhhhH
Q 026952 3 IVGLTGGISSGKSTVSNLFKA-N---DVP--VVDADIIAR 36 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~-~---g~~--~i~~d~~~~ 36 (230)
+|+|+|.|||||||+|+.|+. . |.. +++.|.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 478999999999999999993 2 543 455565543
No 160
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.49 E-value=1.2e-06 Score=78.90 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~ 34 (230)
.+|++.|+|||||||+|+.++ ..|+.+++.|.+
T Consensus 370 ~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l 403 (526)
T TIGR01663 370 EMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL 403 (526)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence 589999999999999999999 689999999876
No 161
>PHA00729 NTP-binding motif containing protein
Probab=98.41 E-value=1.5e-06 Score=70.02 Aligned_cols=30 Identities=7% Similarity=0.009 Sum_probs=24.2
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCCCCHHHHH
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDRTSEEDAR 155 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~ 155 (230)
.++.+++..++++.+.+|+++| |.+...+.
T Consensus 118 R~~l~il~~ls~edL~~~Lr~R-g~~~~kI~ 147 (226)
T PHA00729 118 RVSAVIFTTPSPEDLAFYLREK-GWYQIRVT 147 (226)
T ss_pred hCcEEEEecCCHHHHHHHHHhC-CCcHHHhh
Confidence 4688899999999999999998 66555544
No 162
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.41 E-value=2.3e-05 Score=69.31 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCc-EEehhhhhH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVP-VVDADIIAR 36 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~-~i~~d~~~~ 36 (230)
+.+|.++|++||||||++..|+ .+|+. ++++|.+..
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~ 292 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVRE 292 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHH
Confidence 4689999999999999999999 68987 678887744
No 163
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.38 E-value=2.4e-06 Score=68.19 Aligned_cols=65 Identities=22% Similarity=0.316 Sum_probs=46.2
Q ss_pred EEEEEcCH-HHHHHHHHhhCCCCHHHHHHHHH-hcCCccccc--ccCCEEEeCCCCHHHHHHHHHHHHH
Q 026952 129 IVVVWVDP-DTQLQRLMARDRTSEEDARNRIN-AQMPLDIKR--NNADIVINNTGTLDDLNEQVRKVLF 193 (230)
Q Consensus 129 vi~l~~~~-~~~~~Rl~~R~~~~~~~~~~r~~-~~~~~~~~~--~~ad~iI~n~~~~~~v~~~i~~~l~ 193 (230)
.+|+.+|. .++.+|+.+|+-.+++.+.+|+. .+.+..... ..+|+++.|+.++++..+++..++.
T Consensus 152 ~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~g~~d~~~~ns~~lee~~kel~~~~~ 220 (231)
T KOG0707|consen 152 YIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILENSGSFDLVIVNSDRLEEAYKELEIFIS 220 (231)
T ss_pred EEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhccccCCccccceecCCCchhhhhhhhhhhhh
Confidence 45665544 67889999995567888888887 343433322 3578999997788999988887663
No 164
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.37 E-value=2.1e-07 Score=69.59 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
+|+|.||+||||||+++.|.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999994
No 165
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=98.36 E-value=1.1e-06 Score=70.79 Aligned_cols=52 Identities=25% Similarity=0.190 Sum_probs=43.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhC
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFG 54 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~ 54 (230)
-.++.|+|||||+|+|..+. .+++.++++.++.+.....+++.+..+.+...
T Consensus 17 ~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~ 69 (235)
T KOG3078|consen 17 RAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAID 69 (235)
T ss_pred EEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHH
Confidence 46899999999999999999 68999999999999876677777777766553
No 166
>PLN02165 adenylate isopentenyltransferase
Probab=98.32 E-value=3.2e-06 Score=71.83 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADII 34 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~ 34 (230)
+|+|.||+||||||+|..|+ .++..++++|.+
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 79999999999999999999 678889999876
No 167
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=98.31 E-value=2.7e-05 Score=60.00 Aligned_cols=167 Identities=14% Similarity=0.108 Sum_probs=83.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCC---cEEehhhhhHH-hhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCCh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDV---PVVDADIIARD-VLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS 77 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~---~~i~~d~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (230)
+|+|+|..+|||.|+|+.|. .++. .+++.....+. .....+ ..+.+.++...+.+. .|..+
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~g---ld~~~Ll~d~~YKE~---~R~~m-------- 66 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHG---LNFQRLLDTSTYKEA---FRKDM-------- 66 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhC---hhHHHhcCCcccchh---hhHHH--------
Confidence 58999999999999999998 5553 25665444333 221111 222233333222111 11111
Q ss_pred HHHHHHHhh--hhHHHHHHHHHHHHHHHhcCCcEEEEE-eeeecccc-ccccC---CeEEEEEcCHHHHHHHHHhhCCCC
Q 026952 78 SKRQLLNGL--LAPYISLGIFMEVLKLWIKGCKVIVLD-VPLLFEAK-MDKWT---KPIVVVWVDPDTQLQRLMARDRTS 150 (230)
Q Consensus 78 ~~~~~l~~~--~~p~v~~~~~~~~~~~~~~~~~~viie-~~~~~e~~-~~~~~---d~vi~l~~~~~~~~~Rl~~R~~~~ 150 (230)
.+|.+.. ..|.+. ....... ...+++++. .+-..+.. ++..+ -+.|-+.++.+++.+|.-.... .
T Consensus 67 --i~w~e~~r~~dp~~F---~r~~~~~--~~~~v~iIsD~Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rgw~Ft~-g 138 (182)
T TIGR01223 67 --IRWGEEKRQADPGFF---CRKIVEG--ISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTP-G 138 (182)
T ss_pred --HHHHHHHHhhCccHH---HHHHHhc--cCCCEEEEeCCCcccHHHHHHHHcCCceEEEEEecCHHHHHHHHHhccc-c
Confidence 1221111 122111 1111111 123455555 33221111 11121 2468899999999998733210 0
Q ss_pred HHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 151 EEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 151 ~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
.++ ...+..+.. ....|++|.|+++.+.+.+++..++..+.
T Consensus 139 vdd----~~SEc~lDd-~~~~D~vi~Nd~~~~~l~~~l~~l~~~i~ 179 (182)
T TIGR01223 139 VDD----AESECGLDN-FGDFDWVIENHGVEQRLEEQLENLIEFIR 179 (182)
T ss_pred ccc----cccccCCCc-ccceeEEEecCCChHHHHHHHHHHHHHHH
Confidence 000 011111222 23479999999999999999999888764
No 168
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.27 E-value=3.7e-06 Score=69.66 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCCC--cEEehhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----ANDV--PVVDADI 33 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g~--~~i~~d~ 33 (230)
.+|+|+|+||+||||+...|. +.|. .++..|.
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECC
Confidence 379999999999999988887 3454 4666553
No 169
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.26 E-value=1.6e-05 Score=61.37 Aligned_cols=72 Identities=10% Similarity=0.201 Sum_probs=43.0
Q ss_pred CCeEEEEEcCHHHHHHHHHhhCC--CCHHHHHHHHHhcCCcccccccCC-EEEeCCCCHHHHHHHHHHHHHHhhCC
Q 026952 126 TKPIVVVWVDPDTQLQRLMARDR--TSEEDARNRINAQMPLDIKRNNAD-IVINNTGTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 126 ~d~vi~l~~~~~~~~~Rl~~R~~--~~~~~~~~r~~~~~~~~~~~~~ad-~iI~n~~~~~~v~~~i~~~l~~~~~~ 198 (230)
.|+++|++++|+. ..|+..++. +....++++....+..-....... .++|.+.+++++.++|..+++++...
T Consensus 125 PDlvlfL~v~p~~-~a~rggfG~Erye~v~fqekv~~~~q~l~r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~~ 199 (208)
T KOG3327|consen 125 PDLVLFLDVSPED-AARRGGFGEERYETVAFQEKVLVFFQKLLRKEDLNWHVVDASKSVEKVHQQVRSLVENVLSE 199 (208)
T ss_pred CCeEEEEeCCHHH-HHHhcCcchhHHHHHHHHHHHHHHHHHHHhccCCCeEEEecCccHHHHHHHHHHHHHHhccC
Confidence 5999999999999 333333321 111222333221111101112222 47899999999999999999987765
No 170
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.24 E-value=1.1e-06 Score=57.70 Aligned_cols=21 Identities=48% Similarity=0.733 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
+|+|+|+|||||||+++.|++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999994
No 171
>PHA03132 thymidine kinase; Provisional
Probab=98.23 E-value=9.7e-06 Score=73.54 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh-CCCcEEeh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKA-NDVPVVDA 31 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~-~g~~~i~~ 31 (230)
+++|+|.|..||||||+++.|++ +|..++.+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t 288 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVLVF 288 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCCceEEE
Confidence 36899999999999999999994 45555544
No 172
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=98.21 E-value=1.8e-06 Score=69.15 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCcE-EehhhhhHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKANDVPV-VDADIIARDV 38 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~~g~~~-i~~d~~~~~~ 38 (230)
++|+|+|.+||||||+|+.+.+.|.++ +++.+..++.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~g~~~~~~~~d~ik~~ 38 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIENYNAVKYQLADPIKEI 38 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhcCCcEEEehhHHHHHH
Confidence 489999999999999999999888877 8887776653
No 173
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=98.17 E-value=1e-06 Score=70.28 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=39.6
Q ss_pred CcEEEEEeeeec--ccccccc---CCeEEEEEcCHHHHHHHHHhhC---C--CCHHHHHHHHH
Q 026952 107 CKVIVLDVPLLF--EAKMDKW---TKPIVVVWVDPDTQLQRLMARD---R--TSEEDARNRIN 159 (230)
Q Consensus 107 ~~~viie~~~~~--e~~~~~~---~d~vi~l~~~~~~~~~Rl~~R~---~--~~~~~~~~r~~ 159 (230)
..++|+||.++. ++.|... +|...|++.+.++.++|..+|. | .+++++..|+.
T Consensus 235 ~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~RVa~RHl~sGl~~t~~ea~er~d 297 (323)
T KOG2702|consen 235 TRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEERVAKRHLQSGLVTTIAEARERFD 297 (323)
T ss_pred ceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHHHHHHHhhcccccCCHHHHHhhcc
Confidence 467899986543 4455443 4678999999999999999996 4 67777777754
No 174
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.07 E-value=2.4e-06 Score=65.61 Aligned_cols=35 Identities=37% Similarity=0.570 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhh
Q 026952 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVL 39 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~ 39 (230)
.|+|+|++||||||+++.|+++|++++ .++.+.+.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~g~~~v--~E~ar~~~ 35 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAARGYPVV--PEYAREII 35 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHHT-EEE----TTHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHcCCeEE--eecHHHHH
Confidence 489999999999999999996688877 55555443
No 175
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.01 E-value=5.7e-06 Score=60.61 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEehhh
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVDADI 33 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~~d~ 33 (230)
|.|.|+||+||||+++.++ ..+.+++..+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccc
Confidence 6799999999999999999 67877665543
No 176
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.00 E-value=6.8e-06 Score=69.56 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADI 33 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~ 33 (230)
++|+|+||+||||||+|..|+ +++..+|+.|.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 689999999999999999999 67888999888
No 177
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.99 E-value=7.1e-06 Score=66.98 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCC--CcEEehhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----AND--VPVVDADI 33 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g--~~~i~~d~ 33 (230)
.+|+|+|+||+||||+...|. +.| ..++..|.
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDP 67 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDP 67 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-G
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECC
Confidence 479999999999999999887 234 44666553
No 178
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.98 E-value=8.1e-06 Score=60.96 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEe
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVD 30 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~ 30 (230)
|+++.++|.||+||||+.+.|++.|+..+.
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~~Gfatve 38 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALARAGFATVE 38 (183)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHcCceeec
Confidence 678999999999999999999999986553
No 179
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.94 E-value=8.3e-06 Score=63.23 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCC--CcEEehhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-AND--VPVVDADI 33 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g--~~~i~~d~ 33 (230)
|++|.|+|+|||||||+|..|+ +.+ ..++.+..
T Consensus 1 ~~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 6789999999999999999999 555 34555543
No 180
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.91 E-value=1.2e-05 Score=60.85 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
++.|+|+|+||+||||++..++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHH
Confidence 5789999999999999999998
No 181
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=97.89 E-value=0.00048 Score=52.31 Aligned_cols=101 Identities=13% Similarity=0.138 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhC---C--CCHHH----HHHH
Q 026952 87 LAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARD---R--TSEED----ARNR 157 (230)
Q Consensus 87 ~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~---~--~~~~~----~~~r 157 (230)
..|.+...+.....+... . +-+|+||+-+...-++ ..++.+||+|+++++.+|..+.. | .+.++ +..|
T Consensus 44 ~~~~VR~~l~~~Qr~~a~-~-~~vV~eGRDigTvVfP-dA~~KifLtAs~e~RA~RR~~e~~~~g~~~~~e~v~~~i~~R 120 (157)
T PF02224_consen 44 AIPEVREALVEIQREIAK-K-GGVVMEGRDIGTVVFP-DADLKIFLTASPEVRARRRYKELQEKGKKVSYEEVLEDIKER 120 (157)
T ss_dssp TSHHHHHHHHHHHHHHHT-T-SCEEEEESSCCCCCCT-T-SEEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-c-CCeEEecCCCceEEcC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 356666666555555443 3 3478999876655443 35899999999999988876432 2 24444 4444
Q ss_pred HHhc--CCcccccccCC-EEEeCCC-CHHHHHHHHHH
Q 026952 158 INAQ--MPLDIKRNNAD-IVINNTG-TLDDLNEQVRK 190 (230)
Q Consensus 158 ~~~~--~~~~~~~~~ad-~iI~n~~-~~~~v~~~i~~ 190 (230)
.... ....+.....| ++|||+. +++++.++|.+
T Consensus 121 D~~D~~R~~aPL~~a~DAi~IDts~lti~evv~~il~ 157 (157)
T PF02224_consen 121 DERDSNREVAPLKKAEDAIVIDTSNLTIEEVVEKILE 157 (157)
T ss_dssp HHHHHCTSSS-SS--TTSEEEETTTS-HHHHHHHHHH
T ss_pred ChhhccCccCCCccCCCeEEEECCCCCHHHHHHHHhC
Confidence 4433 24566666666 5789887 88888887753
No 182
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=7.4e-05 Score=56.55 Aligned_cols=37 Identities=32% Similarity=0.263 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH---hCCCcEEehhhhhHHhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK---ANDVPVVDADIIARDVL 39 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~---~~g~~~i~~d~~~~~~~ 39 (230)
+-.+.|+.||||||+-.... ..++.++++|.+...+.
T Consensus 4 l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~ 43 (187)
T COG4185 4 LDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQIS 43 (187)
T ss_pred EEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcC
Confidence 45678999999999866554 34678999999876543
No 183
>PLN02840 tRNA dimethylallyltransferase
Probab=97.84 E-value=1.8e-05 Score=69.33 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADI 33 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~ 33 (230)
++|+|+||+||||||++..|+ +++..+|+.|.
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 579999999999999999999 67888888876
No 184
>PLN02796 D-glycerate 3-kinase
Probab=97.80 E-value=1.9e-05 Score=67.41 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-C---C--CcEEehhhhhH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-N---D--VPVVDADIIAR 36 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~---g--~~~i~~d~~~~ 36 (230)
.+|+|+|++||||||+++.|.. + | ...++.|+++.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 5799999999999999999982 2 2 45788888864
No 185
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.80 E-value=1.7e-05 Score=59.42 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~ 23 (230)
|+.|.+.|++||||||+++.|..
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcC
Confidence 89999999999999999999984
No 186
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.79 E-value=1.9e-05 Score=68.83 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh----CC--CcEEehhhhhH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKA----ND--VPVVDADIIAR 36 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~----~g--~~~i~~d~~~~ 36 (230)
+.+|+|+|++||||||+++.|.. .| ...|+.|+++.
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL 253 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 253 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence 36899999999999999999972 22 56788899874
No 187
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.78 E-value=0.00078 Score=54.38 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHh----CCC--cEEehhhhhHHhhc
Q 026952 3 IVGLTGGISSGKSTVSNLFKA----NDV--PVVDADIIARDVLK 40 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~----~g~--~~i~~d~~~~~~~~ 40 (230)
+|++.|.||.|||++|+.|++ .|+ .+++.+++.|....
T Consensus 14 ~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~ 57 (222)
T PF01591_consen 14 VIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSG 57 (222)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccc
Confidence 689999999999999999994 454 58999999887654
No 188
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=97.78 E-value=0.00017 Score=63.93 Aligned_cols=179 Identities=16% Similarity=0.191 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-----CCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCC
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-----NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSD 76 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-----~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 76 (230)
+.+++.|+.|+|-..+=+.|.. ++.++=.++...+.-...|..++.-..+.|..++. .++.+....+...+|+.
T Consensus 341 rtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~-~~~~lE~GEy~~nlYGT 419 (542)
T KOG0609|consen 341 RTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIR-AGKFLEYGEYEGNLYGT 419 (542)
T ss_pred ceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhh-cCCceecCcchhccccc
Confidence 4689999999999999999972 44444444444333223333333223333333332 22334444444444433
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeee--eccccccccCCeEEEEEcCHHHHHHHHHhhCC------
Q 026952 77 SSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPL--LFEAKMDKWTKPIVVVWVDPDTQLQRLMARDR------ 148 (230)
Q Consensus 77 ~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~--~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~------ 148 (230)
+.. -+.... ..+.++++|..- +..-.-.+...++||+.+|+-.++++.++-..
T Consensus 420 s~d------------------sVr~v~-~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~ 480 (542)
T KOG0609|consen 420 SLD------------------SVRNVI-ASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVA 480 (542)
T ss_pred hHH------------------HHHHHH-HhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhcccccccc
Confidence 211 011111 234678888431 11111123346889999888776665554322
Q ss_pred --CCHHHHHHHHHhcCCcc-cccccCCEEEeCCCCHHHHHHHHHHHHHHhhCCCch
Q 026952 149 --TSEEDARNRINAQMPLD-IKRNNADIVINNTGTLDDLNEQVRKVLFEIKRPLNW 201 (230)
Q Consensus 149 --~~~~~~~~r~~~~~~~~-~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~~~~ 201 (230)
.+.++++.-.+....++ .+..++|.+|.|+ +++..++++...+..+..++.|
T Consensus 481 ~~~~d~~Lq~i~~eS~~ie~~yghyfD~iIvN~-dld~t~~eL~~~iekl~tepqW 535 (542)
T KOG0609|consen 481 KQFTDEDLQEIIDESARIEQQYGHYFDLIIVNS-DLDKTFRELKTAIEKLRTEPQW 535 (542)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhhhheeEEEEcC-cHHHHHHHHHHHHHHhccCCce
Confidence 45566555544332222 3557789999887 8899999999999999888877
No 189
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.77 E-value=0.00015 Score=54.48 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH----hCCC--cEEehhhhhHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFK----ANDV--PVVDADIIARDV 38 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~----~~g~--~~i~~d~~~~~~ 38 (230)
.|.|+|.+||||||+|-+|. +.|. ..++-|++.+.+
T Consensus 33 viWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL 74 (207)
T KOG0635|consen 33 VIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL 74 (207)
T ss_pred EEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccc
Confidence 68999999999999998887 3554 355566665543
No 190
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.76 E-value=2.5e-05 Score=65.41 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADI 33 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~ 33 (230)
+|+|+||+|||||+++..|+ +++..+|+.|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 58999999999999999999 67888899877
No 191
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=97.75 E-value=0.00048 Score=55.08 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|++|+|+|.|.|||||.|+.|.
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~ 22 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELR 22 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHH
Confidence 8999999999999999999998
No 192
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00016 Score=65.36 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
|.+-||||||||.+|++++ +.|.++++.
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCceEee
Confidence 6789999999999999999 889888765
No 193
>PRK06761 hypothetical protein; Provisional
Probab=97.69 E-value=3.5e-05 Score=64.35 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCC
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AND 25 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g 25 (230)
++|+|+|+|||||||+++.|+ +++
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999999 444
No 194
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.63 E-value=5.3e-05 Score=66.52 Aligned_cols=30 Identities=37% Similarity=0.411 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
++.|+|+|++||||||+++.|+ .+|...+.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 4689999999999999999999 56876553
No 195
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.63 E-value=4.8e-05 Score=60.43 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADII 34 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~ 34 (230)
|++++|.||+|+|||.+|-.|+ ++|.++|+.|.+
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri 35 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRI 35 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence 8999999999999999999999 699999999876
No 196
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.59 E-value=7.5e-05 Score=56.41 Aligned_cols=30 Identities=27% Similarity=0.213 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCcEEehhh
Q 026952 4 VGLTGGISSGKSTVSNLFKANDVPVVDADI 33 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~~~g~~~i~~d~ 33 (230)
|.|.|+||+||||+|..|.+.|+.+++=|.
T Consensus 17 vLi~G~sG~GKStlal~L~~~g~~lvaDD~ 46 (149)
T cd01918 17 VLITGPSGIGKSELALELIKRGHRLVADDR 46 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHcCCeEEECCE
Confidence 789999999999999999998987776554
No 197
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.58 E-value=5.8e-05 Score=55.04 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..+.|.|++||||||+++.++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~ 23 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALA 23 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 468999999999999999999
No 198
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.58 E-value=6e-05 Score=58.43 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|++++|+|++||||||+++.|.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li 27 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLI 27 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHH
Confidence 5689999999999999999887
No 199
>PLN02748 tRNA dimethylallyltransferase
Probab=97.57 E-value=6.6e-05 Score=66.85 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADI 33 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~ 33 (230)
++|+|.||+||||||+|..|+ +++..+|+.|.
T Consensus 23 ~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 23 KVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 479999999999999999999 68889999986
No 200
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.56 E-value=8.3e-05 Score=59.74 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-+.+.||||+||||+|+.++ +.|..+..+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 37899999999999999999 677655433
No 201
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.56 E-value=5.9e-05 Score=59.97 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|||||||||+.|.|.
T Consensus 30 vv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 202
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.56 E-value=0.00096 Score=62.53 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-C-----CCcEEehhhhhHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-N-----DVPVVDADIIARDV 38 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~-----g~~~i~~d~~~~~~ 38 (230)
.+|.+.|.||+||||+++.|++ + ...+++.+.+.+.+
T Consensus 216 ~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~ 258 (664)
T PTZ00322 216 LIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRL 258 (664)
T ss_pred eeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhh
Confidence 3789999999999999999994 3 34456666665544
No 203
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.55 E-value=7.6e-05 Score=57.19 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|++|+|+|++||||||+++.|.
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~ 22 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLI 22 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999998
No 204
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00042 Score=58.29 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~ 34 (230)
++|+|.|+.|||||-+|=.|+ +++..+|+.|.+
T Consensus 8 KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm 41 (348)
T KOG1384|consen 8 KVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM 41 (348)
T ss_pred eEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence 589999999999999999999 899999999875
No 205
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.54 E-value=0.0001 Score=52.47 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.+++|.|+|||||||+++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 368999999999999999998
No 206
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.50 E-value=8.3e-05 Score=57.02 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|+|||||||||+.+.++.
T Consensus 31 ~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHh
Confidence 589999999999999999993
No 207
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.48 E-value=9.1e-05 Score=59.68 Aligned_cols=20 Identities=45% Similarity=0.607 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|||||||||+.+.+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.48 E-value=8.4e-05 Score=63.87 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
++++|.|||||||||+|+.|+
T Consensus 79 ~il~L~GPPGsGKStla~~La 99 (361)
T smart00763 79 QILYLLGPVGGGKSSLVECLK 99 (361)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999998
No 209
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.47 E-value=0.00012 Score=54.20 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCC
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDV 26 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~ 26 (230)
.+|++.|+.||||||+++.++ .+|.
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 379999999999999999999 5665
No 210
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=97.46 E-value=5.4e-05 Score=67.63 Aligned_cols=181 Identities=19% Similarity=0.204 Sum_probs=92.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCC----------CcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-AND----------VPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKL 69 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g----------~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 69 (230)
+.+|++.|+++|||||++.... ..+ ...++.|.+++.+.... .....-+.-.+++...++.+.+
T Consensus 44 ~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~-----~~~a~~~~~~f~~pda~~~~l~ 118 (473)
T KOG4203|consen 44 PFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEE-----LAKAQEGKYNFDHPDAFDFELL 118 (473)
T ss_pred eEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHH-----HHHhhhccccccCCCCcchhhH
Confidence 4689999999999999888776 333 33555566665543211 1111111112233333332222
Q ss_pred HhhhcCChHHHHHHHhhhhHHHHHHHHHHHHH--HHhcCCcEEEEEeeee-ccccccccCCeEEEEEcCHHHHHHHHHhh
Q 026952 70 GQIVFSDSSKRQLLNGLLAPYISLGIFMEVLK--LWIKGCKVIVLDVPLL-FEAKMDKWTKPIVVVWVDPDTQLQRLMAR 146 (230)
Q Consensus 70 ~~~~~~~~~~~~~l~~~~~p~v~~~~~~~~~~--~~~~~~~~viie~~~~-~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R 146 (230)
-... +.......+..|.+.......... ....+.+++++++... +......+.+..+|++++.+.+..|+..|
T Consensus 119 ~~~~----~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r 194 (473)
T KOG4203|consen 119 YLTL----KNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILR 194 (473)
T ss_pred HHHH----hcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhc
Confidence 1111 111111222223222111110000 0012334455555322 33344566788899999999999998887
Q ss_pred C----CCCHHHHHHHHHhcC-C-----cccccccCCEEEe----CCCCHHHHHHHHHH
Q 026952 147 D----RTSEEDARNRINAQM-P-----LDIKRNNADIVIN----NTGTLDDLNEQVRK 190 (230)
Q Consensus 147 ~----~~~~~~~~~r~~~~~-~-----~~~~~~~ad~iI~----n~~~~~~v~~~i~~ 190 (230)
+ |.+.+.+..++.... + ..+....+|.+|. |+..++...+.+..
T Consensus 195 ~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~ 252 (473)
T KOG4203|consen 195 DIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILS 252 (473)
T ss_pred chhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccccccccceeeehhhhh
Confidence 6 577888888876532 2 2345567887763 44444444444444
No 211
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.45 E-value=0.00014 Score=46.36 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+..|+|++||||||+..++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999987
No 212
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.00011 Score=59.73 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|||||||||+.+.++
T Consensus 31 fvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 213
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.43 E-value=0.00013 Score=55.83 Aligned_cols=28 Identities=36% Similarity=0.512 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH----hCCCcE
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK----ANDVPV 28 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~----~~g~~~ 28 (230)
|++++|+|.++|||||+...|. +.|+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rV 33 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRV 33 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEE
Confidence 7899999999999999999986 367543
No 214
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0001 Score=61.90 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-CCC
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-NDV 26 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~g~ 26 (230)
++|.+.||||+||||+|+.|++ +.+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhhee
Confidence 4799999999999999999994 443
No 215
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00013 Score=59.03 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.++|.|+|||||||+++.|+
T Consensus 35 ~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHh
Confidence 47999999999999999999
No 216
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.40 E-value=0.00017 Score=61.76 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
++.|+|.|++||||||+++.|+ .+|..++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 3579999999999999999999 46887753
No 217
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.40 E-value=0.00014 Score=60.72 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|++|+|+|.+||||||++..|.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li 22 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLV 22 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999998
No 218
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=97.39 E-value=0.0008 Score=57.96 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhH
Q 026952 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADIIAR 36 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~ 36 (230)
.+.++|+.|||||++...|.+.|..+++...+.+
T Consensus 143 ~ivl~G~TGsGKT~iL~~L~~~~~~vlDlE~~ae 176 (345)
T PRK11784 143 LVVLGGNTGSGKTELLQALANAGAQVLDLEGLAN 176 (345)
T ss_pred eEecCCCCcccHHHHHHHHHhcCCeEEECCchhh
Confidence 5789999999999999999988888999977754
No 219
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.37 E-value=0.00011 Score=60.05 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=20.6
Q ss_pred EEcCCCCcHHHHHHHHHh----C--CCcEEehhhhh
Q 026952 6 LTGGISSGKSTVSNLFKA----N--DVPVVDADIIA 35 (230)
Q Consensus 6 I~G~~GSGKTTva~~L~~----~--g~~~i~~d~~~ 35 (230)
|.||+||||||+++.+.+ . ...+++.|.-.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHh
Confidence 689999999999999983 2 34577777553
No 220
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.35 E-value=0.00019 Score=62.92 Aligned_cols=32 Identities=13% Similarity=0.353 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADI 33 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~ 33 (230)
.-|.+.|||||||||+|+.|+ ..+.+++..|.
T Consensus 48 ~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 468999999999999999999 57877777663
No 221
>PHA03136 thymidine kinase; Provisional
Probab=97.34 E-value=0.0036 Score=54.09 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.9
Q ss_pred CCeEEEEEcCHHHHHHHHHhhCC
Q 026952 126 TKPIVVVWVDPDTQLQRLMARDR 148 (230)
Q Consensus 126 ~d~vi~l~~~~~~~~~Rl~~R~~ 148 (230)
.|.+||+++++++..+|+.+|++
T Consensus 192 pD~IIyL~l~~e~~~~RI~kRgR 214 (378)
T PHA03136 192 GGNIVIMDLDECEHAERIIARGR 214 (378)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCC
Confidence 57899999999999999999964
No 222
>PF13245 AAA_19: Part of AAA domain
Probab=97.34 E-value=0.0002 Score=47.83 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=15.3
Q ss_pred EEEEEcCCCCcHH-HHHHHHH
Q 026952 3 IVGLTGGISSGKS-TVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKT-Tva~~L~ 22 (230)
+..|.|+|||||| |+++.++
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 4667999999999 5555554
No 223
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.33 E-value=0.00018 Score=53.46 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcE
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPV 28 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~ 28 (230)
|.|.|+||+|||++++.++ ..+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 6899999999999999999 455443
No 224
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.33 E-value=0.00018 Score=57.10 Aligned_cols=20 Identities=40% Similarity=0.393 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+|.|+||+||||||+++.|.
T Consensus 3 lilI~GptGSGKTTll~~ll 22 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMI 22 (198)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999877
No 225
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.32 E-value=0.00025 Score=52.11 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hC---CCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-AN---DVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~---g~~~i~~ 31 (230)
.+.|.|++|+||||+++.++ .. +..++..
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 57899999999999999999 33 5544443
No 226
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=97.31 E-value=0.014 Score=47.66 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=25.6
Q ss_pred CeEEEEEcC-CCCcHHHHHHHHH----hCCCc--EEehh
Q 026952 1 MRIVGLTGG-ISSGKSTVSNLFK----ANDVP--VVDAD 32 (230)
Q Consensus 1 m~iI~I~G~-~GSGKTTva~~L~----~~g~~--~i~~d 32 (230)
|++|+|.|+ -|+||||++-.|+ +.|-. .|+.|
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 999999998 7899999999998 35654 45543
No 227
>PF05729 NACHT: NACHT domain
Probab=97.31 E-value=0.00018 Score=54.57 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
+++.|.|.+|+||||+++.++
T Consensus 1 r~l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred CEEEEECCCCCChHHHHHHHH
Confidence 468999999999999999998
No 228
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.31 E-value=0.00026 Score=53.10 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCCCcE
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----ANDVPV 28 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g~~~ 28 (230)
++|.|+|+.+|||||+++.|. +.|+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v 31 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRV 31 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--E
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCce
Confidence 579999999999999999997 367643
No 229
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.29 E-value=0.00019 Score=53.11 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 13 ~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHT
T ss_pred EEEEEccCCCccccceeeec
Confidence 68999999999999999998
No 230
>PRK10867 signal recognition particle protein; Provisional
Probab=97.29 E-value=0.00086 Score=59.42 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hC-CC--cEEehhhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----AN-DV--PVVDADIIA 35 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~-g~--~~i~~d~~~ 35 (230)
.+|.++|++||||||.+..|+ +. |. .++++|.+.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 579999999999999777776 24 54 478888764
No 231
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.27 E-value=0.00016 Score=63.24 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 026952 4 VGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~~ 23 (230)
|.|+|+||+||||+|++|++
T Consensus 266 ILIAG~PGaGKsTFaqAlAe 285 (604)
T COG1855 266 ILIAGAPGAGKSTFAQALAE 285 (604)
T ss_pred eEEecCCCCChhHHHHHHHH
Confidence 78999999999999999994
No 232
>PRK09087 hypothetical protein; Validated
Probab=97.27 E-value=0.00033 Score=56.82 Aligned_cols=34 Identities=24% Similarity=0.538 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIAR 36 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~ 36 (230)
.++|.|++|||||++++.++ ..+..+++.+.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~ 80 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS 80 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence 47999999999999999998 57777888765543
No 233
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.26 E-value=0.00031 Score=60.56 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
+.+++|.||||||||.+|++++ +.|+.++..
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~v 179 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVM 179 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEE
Confidence 3578999999999999999999 788876554
No 234
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.00034 Score=58.94 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=31.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADII 34 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~ 34 (230)
|++|+|.||.|||||-+|-.|+ ++|..+||.|..
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 5789999999999999999999 699999999875
No 235
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.00022 Score=60.89 Aligned_cols=20 Identities=35% Similarity=0.424 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|||||||||+.+.++
T Consensus 31 f~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999999
No 236
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.26 E-value=0.0003 Score=55.07 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-----hCCCcEEehhhhhH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-----ANDVPVVDADIIAR 36 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-----~~g~~~i~~d~~~~ 36 (230)
|..|.|.|+|||||||+...+. ++.+.+|.-|-+..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~ 53 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTK 53 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeech
Confidence 5789999999999999877765 35677777776653
No 237
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.25 E-value=0.00026 Score=56.13 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-h---CC--CcEEehhhhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-A---ND--VPVVDADIIA 35 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~---~g--~~~i~~d~~~ 35 (230)
+++|++.||+|+||||.+-.|+ . .| ..++++|.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 5799999999999999888887 2 23 5688888874
No 238
>PF13173 AAA_14: AAA domain
Probab=97.25 E-value=0.00031 Score=51.64 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hC----CCcEEehhhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AN----DVPVVDADIIA 35 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~----g~~~i~~d~~~ 35 (230)
++++|.|+.|+||||+++.++ +. .+.+++.|+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPR 41 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHH
Confidence 578999999999999999998 32 35677776654
No 239
>PRK13768 GTPase; Provisional
Probab=97.25 E-value=0.00035 Score=57.69 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH----hCCC--cEEehhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK----ANDV--PVVDADI 33 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~----~~g~--~~i~~d~ 33 (230)
|++|++.|++||||||++..++ +.|. .+++.|.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 6789999999999999888887 3454 3666664
No 240
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.23 E-value=0.00028 Score=61.91 Aligned_cols=32 Identities=13% Similarity=0.353 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADI 33 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~ 33 (230)
.-|.+.|||||||||+|+.|+ ..+.+++..|.
T Consensus 51 ~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 468999999999999999999 56776666553
No 241
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.22 E-value=0.00026 Score=56.76 Aligned_cols=20 Identities=40% Similarity=0.431 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLIL 50 (216)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 242
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.22 E-value=0.00038 Score=56.46 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|++|+|+|++||||||++..|.
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~ 22 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKIL 22 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHH
Confidence 8999999999999999988887
No 243
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.21 E-value=0.00028 Score=55.45 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~ 39 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 244
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.20 E-value=0.00034 Score=54.16 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCC
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDV 26 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~ 26 (230)
++.|+|++||||||+|..++ ..+-
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~ 25 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGG 25 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47899999999999999998 4443
No 245
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.20 E-value=0.0003 Score=56.30 Aligned_cols=20 Identities=40% Similarity=0.431 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIY 48 (214)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 246
>PRK13695 putative NTPase; Provisional
Probab=97.20 E-value=0.0003 Score=54.51 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
|.|+|+|++||||||+++.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999976
No 247
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.19 E-value=0.00028 Score=60.61 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
++.+.|||||||||+.+.++
T Consensus 33 f~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999999
No 248
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.19 E-value=0.0003 Score=56.47 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 249
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.19 E-value=0.00031 Score=56.13 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~ 48 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLN 48 (211)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 250
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.19 E-value=0.0022 Score=52.90 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=38.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-h---CC--CcEEehhhhhHHhhc------CCchHHHHHHHHhCC
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-A---ND--VPVVDADIIARDVLK------KGTGGWKKVVAAFGE 55 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~---~g--~~~i~~d~~~~~~~~------~~~~~~~~l~~~~~~ 55 (230)
.+|.+.|..||||||+++.|. + .+ ..+|+.|...+.+.- ++..-|++.-+.|+-
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~L 85 (366)
T KOG1532|consen 20 VIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQL 85 (366)
T ss_pred cEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCC
Confidence 478999999999999999997 2 12 348888887665432 223346666666643
No 251
>COG4240 Predicted kinase [General function prediction only]
Probab=97.19 E-value=0.00042 Score=55.63 Aligned_cols=37 Identities=35% Similarity=0.406 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH----hCC---CcEEehhhhhHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK----AND---VPVVDADIIARD 37 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~----~~g---~~~i~~d~~~~~ 37 (230)
+.+++|+||-||||||++-.+. +.| ...+|.|+++..
T Consensus 50 Pli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlt 93 (300)
T COG4240 50 PLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLT 93 (300)
T ss_pred ceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcc
Confidence 4589999999999999998776 344 346788998765
No 252
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.18 E-value=0.00031 Score=54.72 Aligned_cols=20 Identities=45% Similarity=0.340 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.+.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999986
No 253
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.18 E-value=0.00028 Score=58.50 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
-+.+.|||||||||+|+.++
T Consensus 44 ~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999998
No 254
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.18 E-value=0.00031 Score=56.19 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.++
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~ 49 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLY 49 (214)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 255
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.18 E-value=0.0003 Score=54.38 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|+|+||+||||+.+.+.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i 20 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVI 20 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHH
Confidence 38999999999999999887
No 256
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.18 E-value=0.00029 Score=51.52 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.++|.|++||||||+++.+.
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 257
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.00033 Score=55.74 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
+-++.|||||||||+.+.|-+
T Consensus 35 VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHh
Confidence 568999999999999999984
No 258
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.16 E-value=0.00039 Score=55.30 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
++.|+|+|++||||||+.+.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~ 22 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALT 22 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999887
No 259
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.16 E-value=0.00041 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC
Q 026952 2 RIVGLTGGISSGKSTVSNLFKAN 24 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~~ 24 (230)
..|++.|++||||||+.+.|...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999843
No 260
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.16 E-value=0.00033 Score=54.63 Aligned_cols=20 Identities=25% Similarity=0.630 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~ 46 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILA 46 (177)
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 68999999999999999998
No 261
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.15 E-value=0.00046 Score=58.16 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~ 34 (230)
++|+|+||.|||||.+|-.|++.+..+||.|.+
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~~~eIIsaDS~ 37 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKGKAEIINVDSI 37 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCcEEeccHH
Confidence 479999999999999999999545579998874
No 262
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00035 Score=55.77 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 263
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00034 Score=56.87 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 264
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.15 E-value=0.00034 Score=56.31 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 265
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00035 Score=56.19 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 266
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.14 E-value=0.00036 Score=55.47 Aligned_cols=20 Identities=35% Similarity=0.267 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|+|++||||||+.+.++
T Consensus 27 ~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 68999999999999999997
No 267
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.14 E-value=0.00043 Score=60.87 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH----hCCCcE
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK----ANDVPV 28 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~----~~g~~~ 28 (230)
|++|+|+|.+||||||++..|. +.|+.+
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rV 32 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSV 32 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeE
Confidence 8999999999999999998887 356643
No 268
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.14 E-value=0.00051 Score=50.19 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCC
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDV 26 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~ 26 (230)
.+|.+.|.-||||||++|.++ .+|.
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 479999999999999999999 4665
No 269
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.14 E-value=0.00031 Score=50.07 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 026952 4 VGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~ 22 (230)
|.|.|+||+|||++|+.|+
T Consensus 1 I~i~G~~G~GKS~l~~~l~ 19 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELA 19 (107)
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 5799999999999999998
No 270
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.00037 Score=55.77 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 271
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.14 E-value=0.00037 Score=54.48 Aligned_cols=20 Identities=45% Similarity=0.473 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.++++|+|||||||+.+.+.
T Consensus 30 f~fl~GpSGAGKSTllkLi~ 49 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIY 49 (223)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 272
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.13 E-value=0.00037 Score=56.03 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLT 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 273
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.13 E-value=0.00037 Score=55.45 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 274
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00037 Score=56.82 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLN 48 (241)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 275
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.13 E-value=0.00035 Score=55.92 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~ 46 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAIL 46 (213)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999998
No 276
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0011 Score=55.29 Aligned_cols=131 Identities=13% Similarity=0.150 Sum_probs=64.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEe--hhhhhHHhhcCCchHHHHHHHH----hCCcccCCCCccCHHHHHhhhc-
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVD--ADIIARDVLKKGTGGWKKVVAA----FGEDILLPNGEVDRSKLGQIVF- 74 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~--~d~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~~~- 74 (230)
=|.+.||||+|||-+|++++ +.+-++++ ..++.-..+.......+.+++. -+.-+|.+ .++ .+...--
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiD--EiD--slcg~r~e 243 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFID--EID--SLCGSRSE 243 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEee--hhh--hhccCCCC
Confidence 37899999999999999999 66655544 3444433332111122222221 11111110 011 1110000
Q ss_pred CChHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEE---eeeeccccccccCCeEEEEEcCHHHHHHHHHh
Q 026952 75 SDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLD---VPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMA 145 (230)
Q Consensus 75 ~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie---~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~ 145 (230)
+..+. ...+...++.++........+++++. .|+..+..+++.++--||+-.|..-...++-+
T Consensus 244 nEsea--------sRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~ 309 (439)
T KOG0739|consen 244 NESEA--------SRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFK 309 (439)
T ss_pred CchHH--------HHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhhe
Confidence 00111 11122222233332222334555555 35666666777778888998888877776643
No 277
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.12 E-value=0.00039 Score=56.80 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~ 49 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCIN 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 278
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00042 Score=53.98 Aligned_cols=20 Identities=45% Similarity=0.501 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 279
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.003 Score=57.76 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
|+=|.+.|||||||||+|+.|+ +-++.+++.
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 4568999999999999999999 566777665
No 280
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00036 Score=55.78 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred cEEEECCCCCCHHHHHHHHh
Confidence 57999999999999999999
No 281
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.11 E-value=0.00047 Score=52.60 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+|+|+|++||||||+++.|.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~ 20 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLV 20 (155)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999987
No 282
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.11 E-value=0.00042 Score=54.41 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.++|+|++||||||+.+.|.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~ 46 (186)
T cd01130 27 NILISGGTGSGKTTLLNALL 46 (186)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 283
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.11 E-value=0.0004 Score=55.84 Aligned_cols=20 Identities=45% Similarity=0.647 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~ 52 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLG 52 (221)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 284
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.11 E-value=0.00041 Score=56.09 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~ 47 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLN 47 (227)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 285
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.00043 Score=53.66 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~ 47 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIIL 47 (173)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 286
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.11 E-value=0.00037 Score=56.62 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999998
No 287
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.10 E-value=0.00035 Score=52.66 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|+|+|||||||++..++
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~ 20 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLA 20 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHH
Confidence 47899999999999999997
No 288
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.10 E-value=0.00042 Score=55.05 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~ 45 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIG 45 (206)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 289
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.00042 Score=55.75 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 290
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.00042 Score=56.31 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~ 56 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLG 56 (233)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 291
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.10 E-value=0.00045 Score=53.24 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.++
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALA 48 (166)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 292
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.09 E-value=0.00052 Score=56.94 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
-|.|.|+||+||||+|+.|+ ..|.+++.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~ 51 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVML 51 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 36799999999999999999 56766553
No 293
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.09 E-value=0.00044 Score=55.28 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 294
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.09 E-value=0.00052 Score=49.27 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhC
Q 026952 3 IVGLTGGISSGKSTVSNLFKAN 24 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~~ 24 (230)
.|+|.|++||||||+.+.|...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999943
No 295
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.08 E-value=0.00048 Score=58.96 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCC--CcEEehhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----AND--VPVVDADI 33 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g--~~~i~~d~ 33 (230)
.+|+|+|+|||||||++..|. +.| +.+++.|.
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 479999999999999999886 234 45677665
No 296
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.00044 Score=56.13 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~ 52 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCIN 52 (233)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 297
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.08 E-value=0.00043 Score=55.88 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (228)
T cd03257 33 TLGLVGESGSGKSTLARAIL 52 (228)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 298
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.08 E-value=0.00046 Score=54.52 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIA 47 (195)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 299
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.08 E-value=0.0005 Score=58.46 Aligned_cols=28 Identities=29% Similarity=0.227 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
-|.|.|+|||||||+++.|+ .+|.+++.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 48899999999999999999 67776553
No 300
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.08 E-value=0.00046 Score=49.60 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|++|+||||+.+.|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999994
No 301
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.00045 Score=56.34 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIA 49 (239)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 302
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.07 E-value=0.00046 Score=56.18 Aligned_cols=20 Identities=40% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 303
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.0012 Score=56.40 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH----hCCCcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK----ANDVPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~----~~g~~~i~~d 32 (230)
-|.++|.+|+||||++-+|. .+|+++++.|
T Consensus 52 tvw~tglsgagkttis~ale~~l~~~gipcy~ld 85 (627)
T KOG4238|consen 52 TVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLD 85 (627)
T ss_pred eEEeeccCCCCcceeehHHHHHHHhcCCcccccC
Confidence 37899999999999998887 4899888774
No 304
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.07 E-value=0.00048 Score=53.59 Aligned_cols=20 Identities=45% Similarity=0.612 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|+|||||||+.+.++
T Consensus 27 ~vAi~GpSGaGKSTLLnLIA 46 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIA 46 (231)
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 68999999999999999999
No 305
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.06 E-value=0.00044 Score=52.79 Aligned_cols=33 Identities=24% Similarity=0.161 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHh-CC-CcEEehhhhhH
Q 026952 4 VGLTGGISSGKSTVSNLFKA-ND-VPVVDADIIAR 36 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~~-~g-~~~i~~d~~~~ 36 (230)
|+=.+.+||||||+|..|.+ +| +.++..|++..
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~ 36 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNITG 36 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCC
Confidence 44468899999999999995 78 99999999854
No 306
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.06 E-value=0.00054 Score=60.11 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-|.+.|+||||||++|+.++ +.+..++..
T Consensus 167 gvLL~GppGtGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred ceEEECCCCCChHHHHHHHHHHhCCCEEEe
Confidence 47899999999999999999 566655543
No 307
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.06 E-value=0.00048 Score=55.32 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~ 34 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLC 34 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 308
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.06 E-value=0.00047 Score=55.85 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 309
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.06 E-value=0.00052 Score=53.06 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH----hCCC--cEEehhhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK----ANDV--PVVDADII 34 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~----~~g~--~~i~~d~~ 34 (230)
+++++|++||||||++..++ +.|. .+++.|.+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 68999999999999998887 2454 46777765
No 310
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.00048 Score=56.89 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 311
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.05 E-value=0.0005 Score=54.98 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 312
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.05 E-value=0.00051 Score=54.49 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~ 48 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 313
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.05 E-value=0.00052 Score=53.41 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~ 49 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLT 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 314
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.05 E-value=0.0005 Score=55.59 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~ 57 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILA 57 (228)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999
No 315
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.05 E-value=0.00053 Score=53.10 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~ 49 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLIL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999
No 316
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.05 E-value=0.0005 Score=55.17 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLA 52 (218)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 317
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.04 E-value=0.0005 Score=55.72 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIV 47 (232)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 318
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.04 E-value=0.00051 Score=56.84 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|+|++||||||+++.+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 319
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.0005 Score=56.14 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 320
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.04 E-value=0.00051 Score=55.53 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~ 54 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVA 54 (225)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 321
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.04 E-value=0.00051 Score=51.64 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~ 47 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIA 47 (144)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 67999999999999999998
No 322
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.00052 Score=54.10 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 323
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.03 E-value=0.00051 Score=56.07 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 324
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.03 E-value=0.00066 Score=61.54 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
++..++||+||||||..+.|+ ++|+.+..
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 468899999999999999999 67776554
No 325
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.00053 Score=54.91 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~ 44 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIA 44 (214)
T ss_pred eEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 326
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.00054 Score=56.00 Aligned_cols=20 Identities=35% Similarity=0.508 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLIN 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 327
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.02 E-value=0.00058 Score=60.24 Aligned_cols=30 Identities=33% Similarity=0.397 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d 32 (230)
-|.|.|||||||||+|+.|+ ..+.+++..|
T Consensus 110 ~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 110 NILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 37899999999999999999 5676666554
No 328
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.02 E-value=0.00055 Score=55.55 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~ 32 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLIS 32 (230)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 329
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.00055 Score=56.30 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLN 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 330
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.02 E-value=0.00058 Score=53.24 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.+.
T Consensus 27 ~~~l~G~nGsGKStLl~~i~ 46 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLA 46 (180)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 331
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.01 E-value=0.0006 Score=52.34 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~ 47 (163)
T cd03216 28 VHALLGENGAGKSTLMKILS 47 (163)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 332
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00056 Score=56.16 Aligned_cols=20 Identities=45% Similarity=0.630 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFN 50 (250)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 333
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.01 E-value=0.0008 Score=59.11 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
+-|.|.|||||||||+++.++ +.+..++..
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 358899999999999999999 566665554
No 334
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=97.00 E-value=0.00078 Score=51.79 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=26.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCcEEehhhh
Q 026952 4 VGLTGGISSGKSTVSNLFKANDVPVVDADII 34 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~~~g~~~i~~d~~ 34 (230)
|.|+|+||+||||+|-.|.+.|+.+++=|..
T Consensus 21 VLi~G~SG~GKS~lAl~Li~rGh~lvaDD~v 51 (171)
T PF07475_consen 21 VLITGPSGIGKSELALELIKRGHRLVADDRV 51 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHTT-EEEESSEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCeEEeCCEE
Confidence 6899999999999999999999887776654
No 335
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.00058 Score=55.42 Aligned_cols=20 Identities=50% Similarity=0.610 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIP 49 (234)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 336
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.00 E-value=0.00058 Score=56.01 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCIN 50 (250)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 337
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.99 E-value=0.0006 Score=54.97 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCcEEehhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADI 33 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~ 33 (230)
..+.|.|+||+||||+|+.|.. ...+++.|.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~-~~~~~~~d~ 43 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG-KTLVLSFDM 43 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC-CCEEEeccc
Confidence 4689999999999999999972 233555554
No 338
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.99 E-value=0.00058 Score=56.14 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLA 50 (253)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 339
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.99 E-value=0.00061 Score=54.29 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIIL 47 (208)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 340
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.99 E-value=0.0006 Score=56.05 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~ 46 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLA 46 (246)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 341
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.99 E-value=0.00061 Score=53.21 Aligned_cols=20 Identities=25% Similarity=0.581 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALF 47 (182)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 342
>PRK10908 cell division protein FtsE; Provisional
Probab=96.99 E-value=0.00062 Score=54.88 Aligned_cols=20 Identities=40% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 343
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.99 E-value=0.0006 Score=56.10 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.||.||||||+.+.|+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~ 49 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLA 49 (258)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 344
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.99 E-value=0.00061 Score=55.09 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~ 54 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAIS 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 345
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.98 E-value=0.00073 Score=60.84 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d 32 (230)
=|.+.||||||||++|+.++ +.|.+++..+
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 47899999999999999999 6787776654
No 346
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.98 E-value=0.00064 Score=53.81 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILA 47 (198)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 347
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.98 E-value=0.00061 Score=55.60 Aligned_cols=20 Identities=40% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~ 50 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVV 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 348
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.00066 Score=52.47 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 30 ~~~l~G~nGsGKstLl~~i~ 49 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLL 49 (171)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999
No 349
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.98 E-value=0.0006 Score=56.36 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~ 60 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFN 60 (260)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 350
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.98 E-value=0.00061 Score=55.04 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~ 27 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAIL 27 (223)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 78999999999999999999
No 351
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.98 E-value=0.00066 Score=57.44 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH----hCCC--cEEehhhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK----ANDV--PVVDADII 34 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~----~~g~--~~i~~d~~ 34 (230)
+.+|+|+|++||||||++..|. +.|. .+++.|..
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4689999999999999999987 2454 46666643
No 352
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.98 E-value=0.0006 Score=56.05 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILM 47 (252)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 353
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.98 E-value=0.00088 Score=58.21 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-+.|.|+|||||||+++.++ +.+..++..
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 48899999999999999999 566655543
No 354
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.98 E-value=0.00062 Score=56.21 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 32 ~~~i~G~nGsGKSTLl~~la 51 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLN 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 355
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.98 E-value=0.00065 Score=54.22 Aligned_cols=20 Identities=40% Similarity=0.458 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIA 49 (207)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 356
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.98 E-value=0.00061 Score=55.26 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~ 33 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAIL 33 (230)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 357
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.97 E-value=0.00063 Score=56.18 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~ 53 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALS 53 (258)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 358
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.97 E-value=0.00065 Score=54.60 Aligned_cols=20 Identities=40% Similarity=0.599 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~ 51 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLA 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 359
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00065 Score=54.96 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLM 50 (229)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 360
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00066 Score=54.23 Aligned_cols=20 Identities=45% Similarity=0.596 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~ 45 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIA 45 (211)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 361
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.96 E-value=0.00065 Score=55.70 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLN 48 (247)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 362
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.00064 Score=55.92 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~ 51 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFN 51 (253)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 363
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.96 E-value=0.0008 Score=59.23 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d 32 (230)
-|.|.||||||||++|+.|+ .++.++...+
T Consensus 118 ~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 118 NILLIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred eEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 48899999999999999999 5776665444
No 364
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.96 E-value=0.00065 Score=56.19 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~ 59 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLA 59 (257)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 365
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.00059 Score=56.59 Aligned_cols=20 Identities=40% Similarity=0.614 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~ 58 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLG 58 (265)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999999
No 366
>PHA03134 thymidine kinase; Provisional
Probab=96.96 E-value=0.0094 Score=50.77 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=20.5
Q ss_pred CCeEEEEEcCHHHHHHHHHhhCC
Q 026952 126 TKPIVVVWVDPDTQLQRLMARDR 148 (230)
Q Consensus 126 ~d~vi~l~~~~~~~~~Rl~~R~~ 148 (230)
.|.+|+++.++++..+|+.+|++
T Consensus 164 G~niVl~~l~~~e~~~Rl~~R~R 186 (340)
T PHA03134 164 GGNLVVTTLNPDEHLRRLRARAR 186 (340)
T ss_pred CCeEEEEeCCHHHHHHHHHHcCC
Confidence 47889999999999999999854
No 367
>PRK06620 hypothetical protein; Validated
Probab=96.95 E-value=0.00077 Score=54.22 Aligned_cols=28 Identities=18% Similarity=0.409 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
-+.|.|++|||||++++.++ ..+..+++
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 47899999999999999998 45554443
No 368
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.95 E-value=0.00067 Score=55.21 Aligned_cols=20 Identities=45% Similarity=0.790 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQ 49 (237)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 369
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.00062 Score=54.15 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~ 54 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALA 54 (202)
T ss_pred EEEEECCCCCCHHHHHHHhc
Confidence 68999999999999999999
No 370
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.95 E-value=0.00069 Score=54.64 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~ 55 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLY 55 (224)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 371
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.95 E-value=0.00068 Score=54.37 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~ 58 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLA 58 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 372
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.95 E-value=0.029 Score=42.70 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh---CCCcEEehhhhhHHhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA---NDVPVVDADIIARDVL 39 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~---~g~~~i~~d~~~~~~~ 39 (230)
+||.+-|.+.||||++|.+|.+ -.+-++..|.|...+.
T Consensus 24 riVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lp 64 (205)
T COG3896 24 RIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALP 64 (205)
T ss_pred eEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCC
Confidence 4889999999999999999984 3355777788866543
No 373
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.95 E-value=0.0007 Score=54.43 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~ 51 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALF 51 (221)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 374
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.00069 Score=55.65 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14251 32 LTALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 375
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.95 E-value=0.0007 Score=53.86 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~ 48 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILA 48 (204)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 376
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00067 Score=55.06 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~ 46 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIA 46 (232)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 377
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.00069 Score=55.51 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFN 49 (246)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 378
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00069 Score=55.96 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~ 59 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLN 59 (259)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 379
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.94 E-value=0.0008 Score=53.73 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|+|+|++||||||+.+.+.
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~ 43 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLI 43 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 380
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.94 E-value=0.00068 Score=56.36 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~ 56 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMI 56 (269)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 381
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00069 Score=55.67 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~ 52 (252)
T PRK14255 33 ITALIGPSGCGKSTYLRTLN 52 (252)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 382
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.00071 Score=55.28 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMIN 48 (242)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 383
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.94 E-value=0.0007 Score=54.76 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~ 69 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLA 69 (224)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 384
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.00071 Score=55.63 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~ 51 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSIN 51 (252)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999
No 385
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.00071 Score=55.54 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSIN 50 (250)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 386
>PRK04195 replication factor C large subunit; Provisional
Probab=96.93 E-value=0.00088 Score=60.44 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
+.+.|+||||+||||+++.|+ +.|+.++..
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 358899999999999999999 678766554
No 387
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.93 E-value=0.00072 Score=55.16 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~ 48 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCIN 48 (240)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 388
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00094 Score=53.68 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcE
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPV 28 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~ 28 (230)
+-+|.||.||||||++..|. +.++.+
T Consensus 32 vhaiMGPNGsGKSTLa~~i~G~p~Y~V 58 (251)
T COG0396 32 VHAIMGPNGSGKSTLAYTIMGHPKYEV 58 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceE
Confidence 46899999999999999999 554443
No 389
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.93 E-value=0.00074 Score=54.07 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~ 45 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIA 45 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 390
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.93 E-value=0.00074 Score=54.51 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~ 61 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLE 61 (226)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 391
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.00071 Score=56.37 Aligned_cols=20 Identities=40% Similarity=0.424 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~ 54 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALM 54 (272)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 392
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.92 E-value=0.00072 Score=55.03 Aligned_cols=20 Identities=45% Similarity=0.634 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.++
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~ 50 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLE 50 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 393
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.92 E-value=0.00085 Score=60.75 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
=+.+.||||||||++++.++ +.+.+++..
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 37899999999999999999 677776654
No 394
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.00074 Score=56.10 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~ 68 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSIN 68 (268)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 395
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.92 E-value=0.00072 Score=55.63 Aligned_cols=20 Identities=45% Similarity=0.562 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~ 52 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLT 52 (255)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 396
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.00078 Score=54.37 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+|+|.|++||||||+.+.|.
T Consensus 32 ~VaiIG~SGaGKSTLLR~ln 51 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLN 51 (258)
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999998
No 397
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.0007 Score=56.35 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLS 48 (271)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999998
No 398
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.91 E-value=0.00078 Score=53.55 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.++
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~ 52 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALL 52 (204)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 399
>CHL00181 cbbX CbbX; Provisional
Probab=96.91 E-value=0.0007 Score=56.95 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
-+.+.|+||+||||+|+.++
T Consensus 61 ~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999997
No 400
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.91 E-value=0.00074 Score=56.17 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~ 54 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIG 54 (269)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 401
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.91 E-value=0.00077 Score=55.54 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~ 51 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVL 51 (251)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 402
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.00077 Score=54.76 Aligned_cols=20 Identities=40% Similarity=0.483 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~ 48 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLF 48 (236)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 403
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.91 E-value=0.00078 Score=54.91 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~ 68 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILS 68 (236)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 404
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.90 E-value=0.00079 Score=55.27 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLN 50 (250)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 405
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.90 E-value=0.00076 Score=56.69 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~ 58 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTN 58 (289)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 406
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.89 E-value=0.00073 Score=55.50 Aligned_cols=20 Identities=40% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~ 54 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIA 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999998
No 407
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0021 Score=50.41 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.2
Q ss_pred CCeEEEEEcCHHHHHHHHHhhC
Q 026952 126 TKPIVVVWVDPDTQLQRLMARD 147 (230)
Q Consensus 126 ~d~vi~l~~~~~~~~~Rl~~R~ 147 (230)
.|.+|||.++|+++.+|+..|.
T Consensus 154 ~dgiIYLrasPetc~~Ri~~R~ 175 (244)
T KOG4235|consen 154 LDGIIYLRASPETCYKRIYLRA 175 (244)
T ss_pred cceEEEeecChHHHHHHHHHHh
Confidence 5889999999999999999885
No 408
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.00074 Score=54.95 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLC 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999998
No 409
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=96.89 E-value=0.00086 Score=50.89 Aligned_cols=27 Identities=37% Similarity=0.507 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCc
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVP 27 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~ 27 (230)
|+.|+|.|+-.|||||+++.|+ .+|.+
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt~ 35 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNTT 35 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCCC
Confidence 6889999999999999999999 56654
No 410
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.89 E-value=0.0012 Score=45.04 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH----hCCCcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK----ANDVPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~----~~g~~~i~~d 32 (230)
+|+++|..|+||||++..|+ +.|..+.-.|
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 47899999999999999998 2477665555
No 411
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.00081 Score=55.32 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFN 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 412
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.89 E-value=0.00082 Score=55.21 Aligned_cols=20 Identities=40% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSIN 52 (252)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999997
No 413
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.88 E-value=0.00081 Score=55.98 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~ 56 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILT 56 (271)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 414
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.88 E-value=0.00085 Score=55.46 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~ 47 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILA 47 (255)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 415
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.88 E-value=0.00085 Score=55.75 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~ 66 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLN 66 (267)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 416
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.88 E-value=0.00083 Score=55.53 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~ 49 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALS 49 (258)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 417
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.88 E-value=0.00085 Score=55.11 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 31 VVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999997
No 418
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.88 E-value=0.00081 Score=56.23 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~ 54 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLN 54 (280)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 419
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.00091 Score=57.83 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
..+-||||+||||+|+.++ ..+..+..
T Consensus 51 mIl~GPPG~GKTTlA~liA~~~~~~f~~ 78 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAGTTNAAFEA 78 (436)
T ss_pred eEEECCCCCCHHHHHHHHHHhhCCceEE
Confidence 4678999999999999999 45555443
No 420
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=96.88 E-value=0.00085 Score=55.88 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 52 ~~~I~G~nGsGKSTLl~~i~ 71 (271)
T PRK14238 52 VTAIIGPSGCGKSTYIKTLN 71 (271)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 421
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.87 E-value=0.00089 Score=53.33 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~ 55 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALF 55 (207)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 422
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.87 E-value=0.00076 Score=52.24 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=16.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
+.+.|.|++|+||||+.+.+.
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999887
No 423
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.87 E-value=0.00085 Score=55.83 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 41 ~~~l~G~nGsGKSTLl~~l~ 60 (269)
T PRK14259 41 VTALIGPSGCGKSTVLRSLN 60 (269)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 424
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.87 E-value=0.00089 Score=53.77 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~ 48 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAIL 48 (218)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 425
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.87 E-value=0.00085 Score=55.65 Aligned_cols=20 Identities=45% Similarity=0.634 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~ 58 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLL 58 (265)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 426
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.00087 Score=55.76 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~ 71 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCIN 71 (269)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 427
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.86 E-value=0.001 Score=57.03 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcE
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPV 28 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~ 28 (230)
-+.|+|+||+||||+|+.++ +.+..+
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 57899999999999999999 566544
No 428
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.00091 Score=55.55 Aligned_cols=20 Identities=40% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~ 67 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLN 67 (267)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999
No 429
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.0009 Score=55.26 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~ 59 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLN 59 (258)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 430
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.00093 Score=54.89 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14270 32 ITALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999
No 431
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.85 E-value=0.001 Score=55.48 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH----hCCC--cEEehhhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK----ANDV--PVVDADII 34 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~----~~g~--~~i~~d~~ 34 (230)
+++|+++|++|+||||.+..|+ +.|. .++++|.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 4689999999999999988887 2453 46888865
No 432
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.85 E-value=0.00089 Score=56.79 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~ 54 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLN 54 (305)
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999999
No 433
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.84 E-value=0.00098 Score=52.93 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILA 47 (201)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 434
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.00095 Score=54.83 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 33 ~~~I~G~nGsGKSTLl~~i~ 52 (251)
T PRK14244 33 VTAFIGPSGCGKSTFLRCFN 52 (251)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 435
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.00095 Score=54.94 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~ 54 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLN 54 (254)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 436
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.84 E-value=0.00096 Score=54.71 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (249)
T PRK14253 31 VTALIGPSGCGKSTLLRCLN 50 (249)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 437
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.84 E-value=0.00093 Score=53.03 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|.
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 438
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.84 E-value=0.00092 Score=55.76 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 29 ~~~l~G~nGsGKSTLl~~la 48 (272)
T PRK13547 29 VTALLGRNGAGKSTLLKALA 48 (272)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 439
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.84 E-value=0.00095 Score=55.00 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~ 50 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAAL 50 (254)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 440
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.83 E-value=0.00097 Score=54.42 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~ 49 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVIT 49 (242)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 441
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.83 E-value=0.0013 Score=55.62 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCc
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVP 27 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~ 27 (230)
-+.|+||||+||||+|+.++ +.+..
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999 55544
No 442
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.82 E-value=0.00088 Score=52.18 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH----hCC--CcEEehhhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK----AND--VPVVDADII 34 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~----~~g--~~~i~~d~~ 34 (230)
++.|.|+|||||||++..++ +.| +.+++++.-
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 37899999999999999886 234 346666443
No 443
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.82 E-value=0.00099 Score=54.96 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.++
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~ 52 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCIN 52 (257)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 444
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0024 Score=52.23 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
++++.|+|||||||..+++.+
T Consensus 29 f~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999973
No 445
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.82 E-value=0.00091 Score=54.75 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLA 48 (248)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999999
No 446
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.82 E-value=0.001 Score=53.60 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMIT 47 (223)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 447
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.82 E-value=0.00098 Score=56.43 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~ 40 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLT 40 (302)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 448
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.81 E-value=0.001 Score=52.76 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~ 47 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIM 47 (200)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 449
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.0011 Score=52.32 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.+++.|||||||||+.+.++
T Consensus 33 ~vv~lGpSGcGKTTLLnl~A 52 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIA 52 (259)
T ss_pred EEEEEcCCCccHHHHHHHHh
Confidence 57899999999999999998
No 450
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.00099 Score=55.77 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
++++.|||||||||+.+.++
T Consensus 30 ~vaLlGpSGaGKsTlLRiIA 49 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIA 49 (345)
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999999
No 451
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.81 E-value=0.001 Score=55.56 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLN 52 (274)
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999999
No 452
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.81 E-value=0.001 Score=52.52 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 37 ~~~l~G~nGsGKStLl~~i~ 56 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALA 56 (194)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 453
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.81 E-value=0.001 Score=55.09 Aligned_cols=20 Identities=40% Similarity=0.494 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~ 51 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLS 51 (262)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 454
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.81 E-value=0.001 Score=56.37 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~ 51 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLL 51 (303)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 455
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0011 Score=54.57 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALN 51 (251)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 456
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=96.80 E-value=0.00094 Score=54.86 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 24 i~~l~G~nGsGKSTLl~~l~ 43 (248)
T PRK03695 24 ILHLVGPNGAGKSTLLARMA 43 (248)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999998
No 457
>PHA02244 ATPase-like protein
Probab=96.80 E-value=0.0012 Score=57.01 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEehhh
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVDADI 33 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~~d~ 33 (230)
|.|.|++||||||+|+.++ ..|.+++....
T Consensus 122 VLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 6789999999999999999 67777766543
No 458
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.001 Score=57.43 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 33 i~~iiG~nGsGKSTLlk~L~ 52 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCIN 52 (343)
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999998
No 459
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.80 E-value=0.0015 Score=58.06 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-+.|.|+||||||++|+.++ +.+..++..
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 47899999999999999999 566555543
No 460
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.001 Score=55.69 Aligned_cols=20 Identities=45% Similarity=0.559 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~ 54 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLIN 54 (282)
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999999
No 461
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0012 Score=50.27 Aligned_cols=20 Identities=45% Similarity=0.511 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 27 ~~~i~G~nGsGKStll~~l~ 46 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIA 46 (157)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 462
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.0011 Score=55.39 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 48 ~~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 48 IIAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 463
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.79 E-value=0.00099 Score=57.35 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
+.|.|+|++||||||+++.|..
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~ 184 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLIS 184 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHc
Confidence 3699999999999999999983
No 464
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.001 Score=57.57 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 26 ~~~l~G~nGsGKSTLl~~ia 45 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAIS 45 (352)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 465
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.79 E-value=0.0011 Score=55.16 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~ 60 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 466
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.79 E-value=0.001 Score=56.97 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|.
T Consensus 35 ~~~lvG~sGsGKSTL~~~l~ 54 (326)
T PRK11022 35 VVGIVGESGSGKSVSSLAIM 54 (326)
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 68999999999999999998
No 467
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=96.79 E-value=0.0011 Score=54.97 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 38 ~~~i~G~nGsGKSTLl~~l~ 57 (264)
T PRK14243 38 ITAFIGPSGCGKSTILRCFN 57 (264)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999
No 468
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=96.78 E-value=0.0011 Score=55.16 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 40 ~~~i~G~nGsGKSTLl~~l~ 59 (268)
T PRK10419 40 TVALLGRSGCGKSTLARLLV 59 (268)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 469
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.0011 Score=54.69 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~ 54 (259)
T PRK14260 35 VTAIIGPSGCGKSTFIKTLN 54 (259)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999
No 470
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=96.77 E-value=0.0011 Score=55.15 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 53 ~~~I~G~nGsGKSTLl~~la 72 (272)
T PRK14236 53 VTAFIGPSGCGKSTLLRCFN 72 (272)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 471
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.0011 Score=55.61 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~ 54 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNIN 54 (286)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 472
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.77 E-value=0.0018 Score=51.65 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH----hCC--CcEEehhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK----AND--VPVVDADI 33 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~----~~g--~~~i~~d~ 33 (230)
++.|+|+|||||||+|..++ ..| ..+++++.
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 68899999999999999988 234 45666654
No 473
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.77 E-value=0.001 Score=55.81 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
-+.|.|+|||||||+|+.++
T Consensus 60 ~vll~G~pGTGKT~lA~~ia 79 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMA 79 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999997776
No 474
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.77 E-value=0.0012 Score=53.84 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~ 47 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIA 47 (237)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 475
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=96.76 E-value=0.0012 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|+.|++.|.+|+||||+.+.|.
T Consensus 1 ~~~i~~iG~~~~GKstl~~~l~ 22 (158)
T PRK15467 1 MKRIAFVGAVGAGKTTLFNALQ 22 (158)
T ss_pred CcEEEEECCCCCCHHHHHHHHc
Confidence 7889999999999999999998
No 476
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.76 E-value=0.0014 Score=56.98 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|++|.|+|.+||||||+++.|.
T Consensus 205 ~~~~~~~g~~~~GKtt~~~~l~ 226 (366)
T PRK14489 205 PPLLGVVGYSGTGKTTLLEKLI 226 (366)
T ss_pred ccEEEEecCCCCCHHHHHHHHH
Confidence 5789999999999999988887
No 477
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.76 E-value=0.0012 Score=57.23 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 34 ~~~llGpsGsGKSTLLr~Ia 53 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVA 53 (351)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999999
No 478
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0031 Score=53.86 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh--hhhhHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA--DIIARD 37 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~--d~~~~~ 37 (230)
=|.+.||||+|||-+|++.+ +.++++|.. ..+...
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 37899999999999999999 678887765 444444
No 479
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.0011 Score=54.95 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~ 54 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLS 54 (265)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68999999999999999998
No 480
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.0012 Score=54.15 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~ 51 (252)
T PRK14272 32 VNALIGPSGCGKTTFLRAIN 51 (252)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 481
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.75 E-value=0.0013 Score=50.38 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
+.+++.|++|+||||+.+.|.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 482
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.75 E-value=0.0012 Score=54.37 Aligned_cols=20 Identities=40% Similarity=0.512 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~ 49 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFA 49 (255)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 483
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=96.74 E-value=0.0012 Score=56.64 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|.
T Consensus 35 ~~~ivG~sGsGKSTLl~~i~ 54 (330)
T PRK15093 35 IRGLVGESGSGKSLIAKAIC 54 (330)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999
No 484
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=96.74 E-value=0.0013 Score=52.95 Aligned_cols=20 Identities=50% Similarity=0.552 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 33 ~~~I~G~nGsGKStLl~~l~ 52 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIG 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 485
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0012 Score=54.75 Aligned_cols=20 Identities=50% Similarity=0.728 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 52 ~~~liG~NGsGKSTLlk~L~ 71 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIG 71 (264)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 486
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.73 E-value=0.0015 Score=57.65 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCCC--cEEehhhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----ANDV--PVVDADIIA 35 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g~--~~i~~d~~~ 35 (230)
.+|+++|++||||||.+..|+ +.|. .++++|.+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 479999999999999999998 2454 567888764
No 487
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0012 Score=57.49 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 31 ~~~l~G~nGsGKSTLL~~ia 50 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIA 50 (369)
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999999
No 488
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0012 Score=56.47 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|.
T Consensus 43 ~~~IvG~sGsGKSTLl~~l~ 62 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLT 62 (327)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999999
No 489
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.73 E-value=0.0013 Score=54.53 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 44 ~~~i~G~nGsGKSTLl~~l~ 63 (265)
T PRK14252 44 VTALIGPSGCGKSTFLRCFN 63 (265)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 490
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0013 Score=54.98 Aligned_cols=20 Identities=40% Similarity=0.488 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~ 49 (275)
T PRK13639 30 MVALLGPNGAGKSTLFLHFN 49 (275)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 491
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.72 E-value=0.0012 Score=56.27 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|.|+|++||||||+++.|..
T Consensus 146 nilI~G~tGSGKTTll~aL~~ 166 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIA 166 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999983
No 492
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.72 E-value=0.0012 Score=60.25 Aligned_cols=20 Identities=40% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.++|.|++||||||+++.|.
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 493
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0013 Score=55.05 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~ 54 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLID 54 (279)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 494
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.72 E-value=0.0013 Score=52.35 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|+|+.||||||+.+.++
T Consensus 31 ~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred EEEEECCCCCccHHHHHHHH
Confidence 68999999999999999998
No 495
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.0013 Score=54.94 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 49 ~~~I~G~nGsGKSTLl~~l~ 68 (276)
T PRK14271 49 VTSLMGPTGSGKTTFLRTLN 68 (276)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 496
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.72 E-value=0.0011 Score=62.15 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|.+||||||+++.|..
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999983
No 497
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0013 Score=55.38 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~ 53 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLN 53 (288)
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 68999999999999999999
No 498
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.72 E-value=0.0014 Score=55.82 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCC--CcEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----AND--VPVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g--~~~i~~d~~ 34 (230)
.+|++.|++||||||.+..|+ ..| ..+++.|.+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 479999999999999999998 234 345666664
No 499
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.72 E-value=0.0013 Score=53.87 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK14266 31 VTALIGPSGCGKSTFIRTLN 50 (250)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 500
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0013 Score=54.93 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~ 51 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFN 51 (277)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
Done!