Query 026952
Match_columns 230
No_of_seqs 122 out of 1332
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 03:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i1u_A Dephospho-COA kinase; s 100.0 6.1E-38 2.1E-42 249.0 20.7 193 1-196 9-203 (210)
2 1jjv_A Dephospho-COA kinase; P 100.0 3.5E-30 1.2E-34 204.5 22.0 193 1-196 2-198 (206)
3 2f6r_A COA synthase, bifunctio 100.0 7.2E-30 2.4E-34 212.4 23.2 198 1-198 75-272 (281)
4 2grj_A Dephospho-COA kinase; T 100.0 2E-29 7E-34 198.4 16.9 172 2-195 13-187 (192)
5 2if2_A Dephospho-COA kinase; a 100.0 9.1E-29 3.1E-33 196.0 19.0 194 1-197 1-194 (204)
6 1vht_A Dephospho-COA kinase; s 100.0 9.5E-28 3.2E-32 192.2 21.7 192 2-196 5-196 (218)
7 1uf9_A TT1252 protein; P-loop, 99.9 1.2E-26 4.2E-31 183.1 17.1 189 1-197 8-196 (203)
8 3ake_A Cytidylate kinase; CMP 99.8 1E-19 3.4E-24 143.8 16.8 186 3-193 4-207 (208)
9 1uj2_A Uridine-cytidine kinase 99.8 2.6E-20 9E-25 152.2 8.4 183 1-198 22-237 (252)
10 1qf9_A UMP/CMP kinase, protein 99.8 2.8E-19 9.6E-24 139.4 12.0 164 1-194 6-191 (194)
11 3lw7_A Adenylate kinase relate 99.8 1.1E-18 3.7E-23 133.7 14.3 164 2-196 2-178 (179)
12 1ukz_A Uridylate kinase; trans 99.8 8.2E-18 2.8E-22 132.6 16.1 166 1-194 15-201 (203)
13 3dl0_A Adenylate kinase; phosp 99.8 2.1E-18 7.1E-23 137.4 11.9 165 2-195 1-215 (216)
14 2h92_A Cytidylate kinase; ross 99.8 2.4E-17 8.1E-22 131.5 17.8 181 2-193 4-216 (219)
15 2c95_A Adenylate kinase 1; tra 99.8 1.1E-17 3.6E-22 130.9 14.3 168 1-196 9-195 (196)
16 2bwj_A Adenylate kinase 5; pho 99.8 8E-18 2.7E-22 131.9 13.6 166 2-195 13-197 (199)
17 3fb4_A Adenylate kinase; psych 99.8 2.5E-18 8.6E-23 136.9 9.9 164 2-194 1-214 (216)
18 4e22_A Cytidylate kinase; P-lo 99.8 2.7E-17 9.1E-22 134.4 15.8 192 2-197 28-247 (252)
19 1cke_A CK, MSSA, protein (cyti 99.7 4.7E-17 1.6E-21 130.2 15.8 190 2-196 6-224 (227)
20 1q3t_A Cytidylate kinase; nucl 99.7 7.1E-17 2.4E-21 130.5 16.5 183 2-194 17-234 (236)
21 3umf_A Adenylate kinase; rossm 99.7 2.3E-17 7.9E-22 131.6 11.7 166 1-194 29-213 (217)
22 3tlx_A Adenylate kinase 2; str 99.7 3.8E-17 1.3E-21 132.8 12.9 164 1-193 29-242 (243)
23 1zuh_A Shikimate kinase; alpha 99.7 2.4E-17 8.1E-22 126.2 10.9 152 1-192 7-167 (168)
24 1tev_A UMP-CMP kinase; ploop, 99.7 7.6E-17 2.6E-21 125.7 13.9 168 2-194 4-194 (196)
25 2pbr_A DTMP kinase, thymidylat 99.7 7.2E-17 2.5E-21 125.8 12.4 167 2-196 1-193 (195)
26 2cdn_A Adenylate kinase; phosp 99.7 1.2E-16 4.1E-21 125.8 13.7 162 2-192 21-199 (201)
27 3r20_A Cytidylate kinase; stru 99.7 9.1E-16 3.1E-20 123.6 19.0 192 2-196 10-229 (233)
28 2qt1_A Nicotinamide riboside k 99.7 1.1E-17 3.8E-22 132.4 7.5 174 1-194 21-205 (207)
29 3vaa_A Shikimate kinase, SK; s 99.7 1.7E-16 5.9E-21 124.9 13.3 159 1-196 25-197 (199)
30 3sr0_A Adenylate kinase; phosp 99.7 1.4E-16 4.8E-21 126.3 12.7 160 2-193 1-203 (206)
31 3kb2_A SPBC2 prophage-derived 99.7 2.6E-16 8.8E-21 120.4 13.7 167 1-200 1-172 (173)
32 3cm0_A Adenylate kinase; ATP-b 99.7 8.2E-17 2.8E-21 125.0 10.9 157 2-192 5-184 (186)
33 3t61_A Gluconokinase; PSI-biol 99.7 3.4E-16 1.2E-20 123.3 13.9 153 1-194 18-179 (202)
34 1y63_A LMAJ004144AAA protein; 99.7 2.3E-16 7.9E-21 122.7 10.4 154 2-195 11-175 (184)
35 1e6c_A Shikimate kinase; phosp 99.7 1.2E-16 4.3E-21 122.4 7.7 155 1-193 2-169 (173)
36 2z0h_A DTMP kinase, thymidylat 99.7 3.9E-16 1.3E-20 122.0 10.0 167 2-196 1-193 (197)
37 1zak_A Adenylate kinase; ATP:A 99.6 4.1E-16 1.4E-20 124.7 9.6 168 1-196 5-212 (222)
38 2pt5_A Shikimate kinase, SK; a 99.6 1.9E-16 6.3E-21 121.0 7.1 152 2-193 1-162 (168)
39 3trf_A Shikimate kinase, SK; a 99.6 7.5E-16 2.6E-20 119.5 8.3 159 1-196 5-176 (185)
40 1rz3_A Hypothetical protein rb 99.6 3.1E-16 1.1E-20 123.7 5.2 160 2-179 23-201 (201)
41 4eun_A Thermoresistant glucoki 99.6 9.1E-15 3.1E-19 115.1 13.3 156 2-194 30-193 (200)
42 1knq_A Gluconate kinase; ALFA/ 99.6 2.9E-14 9.9E-19 109.5 15.8 156 1-193 8-172 (175)
43 1a7j_A Phosphoribulokinase; tr 99.6 3.8E-16 1.3E-20 130.1 5.4 174 2-181 6-218 (290)
44 1sq5_A Pantothenate kinase; P- 99.6 1.7E-16 5.8E-21 133.3 3.0 166 2-180 81-298 (308)
45 1aky_A Adenylate kinase; ATP:A 99.6 7.2E-15 2.5E-19 117.3 12.3 165 1-193 4-218 (220)
46 3gmt_A Adenylate kinase; ssgci 99.6 3.3E-15 1.1E-19 119.8 10.2 163 2-193 9-228 (230)
47 1ak2_A Adenylate kinase isoenz 99.6 1.2E-14 4E-19 117.1 13.6 166 1-195 16-231 (233)
48 3asz_A Uridine kinase; cytidin 99.6 1.7E-15 5.9E-20 119.9 8.4 181 2-193 7-206 (211)
49 2xb4_A Adenylate kinase; ATP-b 99.6 1.2E-14 4.2E-19 116.4 13.3 161 2-192 1-222 (223)
50 2iyv_A Shikimate kinase, SK; t 99.6 2.1E-15 7.3E-20 116.9 7.4 155 2-193 3-167 (184)
51 3be4_A Adenylate kinase; malar 99.6 1.1E-14 3.7E-19 116.2 11.3 162 1-191 5-216 (217)
52 3fdi_A Uncharacterized protein 99.6 2.5E-14 8.5E-19 112.9 12.9 173 2-193 7-197 (201)
53 2j41_A Guanylate kinase; GMP, 99.6 1.3E-15 4.3E-20 120.0 5.3 91 107-198 97-190 (207)
54 2vli_A Antibiotic resistance p 99.6 3.4E-14 1.2E-18 109.7 12.8 157 1-198 5-175 (183)
55 1zd8_A GTP:AMP phosphotransfer 99.6 2.2E-14 7.5E-19 115.0 12.1 167 1-198 7-218 (227)
56 1via_A Shikimate kinase; struc 99.6 7.5E-15 2.6E-19 113.0 8.8 152 1-193 4-165 (175)
57 2wwf_A Thymidilate kinase, put 99.6 9E-15 3.1E-19 115.6 8.6 170 2-195 11-200 (212)
58 1kag_A SKI, shikimate kinase I 99.6 3.3E-15 1.1E-19 114.5 5.9 153 2-193 5-171 (173)
59 2qor_A Guanylate kinase; phosp 99.5 1.8E-14 6.2E-19 113.7 9.6 68 128-196 128-198 (204)
60 3a4m_A L-seryl-tRNA(SEC) kinas 99.5 1.5E-13 5.1E-18 112.6 14.5 152 1-196 4-175 (260)
61 2jeo_A Uridine-cytidine kinase 99.5 9.5E-14 3.3E-18 112.7 12.7 91 106-196 133-237 (245)
62 1e4v_A Adenylate kinase; trans 99.5 3.8E-14 1.3E-18 112.6 9.7 161 3-192 2-213 (214)
63 3hdt_A Putative kinase; struct 99.5 1.6E-13 5.5E-18 109.9 12.3 182 2-194 15-218 (223)
64 2rhm_A Putative kinase; P-loop 99.5 2.2E-13 7.4E-18 105.9 12.6 36 2-37 6-42 (193)
65 1nn5_A Similar to deoxythymidy 99.5 1.1E-13 3.8E-18 109.4 10.9 73 125-197 129-203 (215)
66 1dek_A Deoxynucleoside monopho 99.5 4.8E-14 1.6E-18 114.0 8.9 69 125-194 167-240 (241)
67 4edh_A DTMP kinase, thymidylat 99.5 5.9E-13 2E-17 105.9 15.1 172 2-197 7-209 (213)
68 2plr_A DTMP kinase, probable t 99.5 6.7E-13 2.3E-17 104.6 15.3 69 126-196 122-209 (213)
69 3nwj_A ATSK2; P loop, shikimat 99.5 1E-13 3.5E-18 112.9 10.6 161 2-198 49-240 (250)
70 1nks_A Adenylate kinase; therm 99.5 5.8E-13 2E-17 103.3 14.0 162 1-192 1-193 (194)
71 2v54_A DTMP kinase, thymidylat 99.5 1E-13 3.5E-18 108.8 9.8 167 2-197 5-193 (204)
72 3iij_A Coilin-interacting nucl 99.5 6.3E-14 2.2E-18 108.2 8.4 150 2-195 12-171 (180)
73 2jaq_A Deoxyguanosine kinase; 99.5 4.5E-13 1.5E-17 104.9 13.3 72 125-197 124-203 (205)
74 3tqc_A Pantothenate kinase; bi 99.5 8.5E-15 2.9E-19 123.2 2.8 165 1-178 92-308 (321)
75 4tmk_A Protein (thymidylate ki 99.5 1.9E-12 6.4E-17 103.0 16.1 175 2-198 4-210 (213)
76 1qhx_A CPT, protein (chloramph 99.5 6.6E-13 2.2E-17 102.0 13.0 161 2-192 4-176 (178)
77 4hlc_A DTMP kinase, thymidylat 99.5 2.4E-12 8.3E-17 101.8 16.4 171 2-198 3-204 (205)
78 3tr0_A Guanylate kinase, GMP k 99.5 2.1E-13 7.2E-18 107.1 10.0 68 128-196 120-188 (205)
79 4eaq_A DTMP kinase, thymidylat 99.5 5.2E-12 1.8E-16 101.5 17.2 73 125-197 148-227 (229)
80 3lv8_A DTMP kinase, thymidylat 99.4 2.4E-12 8.1E-17 103.9 15.0 174 2-199 28-233 (236)
81 3a00_A Guanylate kinase, GMP k 99.4 1.1E-14 3.6E-19 113.5 1.1 66 127-193 115-183 (186)
82 1kht_A Adenylate kinase; phosp 99.4 1.9E-12 6.4E-17 100.4 12.4 37 2-38 4-46 (192)
83 1ex7_A Guanylate kinase; subst 99.4 4.4E-14 1.5E-18 110.0 1.8 87 105-193 91-183 (186)
84 3tau_A Guanylate kinase, GMP k 99.4 1.2E-13 4.1E-18 109.4 4.3 69 128-197 122-191 (208)
85 1ly1_A Polynucleotide kinase; 99.4 5.4E-13 1.8E-17 102.5 7.7 156 1-194 1-172 (181)
86 3hjn_A DTMP kinase, thymidylat 99.4 7E-12 2.4E-16 98.5 13.1 69 126-194 122-191 (197)
87 3ld9_A DTMP kinase, thymidylat 99.4 3.4E-12 1.2E-16 102.0 10.0 70 125-196 145-217 (223)
88 3v9p_A DTMP kinase, thymidylat 99.4 2.5E-12 8.6E-17 103.1 9.1 166 2-194 26-226 (227)
89 3c8u_A Fructokinase; YP_612366 99.3 1.3E-11 4.5E-16 97.5 10.7 70 108-177 125-207 (208)
90 3aez_A Pantothenate kinase; tr 99.3 5.1E-11 1.8E-15 100.0 14.4 75 106-180 194-301 (312)
91 2pez_A Bifunctional 3'-phospho 99.3 1E-11 3.5E-16 95.6 9.3 67 126-194 105-175 (179)
92 3lnc_A Guanylate kinase, GMP k 99.3 5.2E-13 1.8E-17 107.2 1.8 69 129-198 143-212 (231)
93 2yvu_A Probable adenylyl-sulfa 99.2 2.7E-11 9.4E-16 93.8 6.5 63 126-196 113-185 (186)
94 2vp4_A Deoxynucleoside kinase; 99.2 2.6E-10 9E-15 91.4 11.5 73 124-196 145-226 (230)
95 3uie_A Adenylyl-sulfate kinase 99.2 2.2E-10 7.4E-15 89.9 10.7 34 2-35 26-65 (200)
96 1gvn_B Zeta; postsegregational 99.1 3.1E-10 1.1E-14 94.1 11.6 35 2-36 34-71 (287)
97 2gks_A Bifunctional SAT/APS ki 99.1 1.2E-10 4.1E-15 104.7 9.5 150 2-194 373-540 (546)
98 3ch4_B Pmkase, phosphomevalona 99.1 9.6E-11 3.3E-15 91.8 7.5 168 1-198 11-193 (202)
99 2bbw_A Adenylate kinase 4, AK4 99.1 7E-10 2.4E-14 89.7 12.6 37 1-37 27-64 (246)
100 1ltq_A Polynucleotide kinase; 99.1 1.5E-10 5.2E-15 96.2 8.9 125 2-160 3-142 (301)
101 1m7g_A Adenylylsulfate kinase; 99.1 2.9E-10 9.9E-15 89.9 9.4 65 127-194 133-202 (211)
102 3tmk_A Thymidylate kinase; pho 99.1 6.1E-11 2.1E-15 94.3 4.0 74 125-198 125-206 (216)
103 1p5z_B DCK, deoxycytidine kina 99.1 2.2E-09 7.6E-14 87.6 12.6 71 126-196 175-260 (263)
104 3zvl_A Bifunctional polynucleo 99.0 8.1E-10 2.8E-14 96.3 7.9 33 2-34 259-292 (416)
105 2ze6_A Isopentenyl transferase 99.0 7.4E-10 2.5E-14 90.2 6.5 35 1-35 1-36 (253)
106 2ga8_A Hypothetical 39.9 kDa p 98.9 1E-09 3.6E-14 93.0 6.7 69 107-175 260-348 (359)
107 1x6v_B Bifunctional 3'-phospho 98.9 3.5E-09 1.2E-13 96.1 10.5 66 127-195 153-223 (630)
108 1kgd_A CASK, peripheral plasma 98.9 6E-10 2E-14 85.9 4.6 59 127-195 118-179 (180)
109 1s96_A Guanylate kinase, GMP k 98.9 2.6E-10 9E-15 90.9 1.9 90 106-196 107-199 (219)
110 1lvg_A Guanylate kinase, GMP k 98.9 6.2E-09 2.1E-13 81.5 9.6 65 129-194 119-187 (198)
111 3ney_A 55 kDa erythrocyte memb 98.9 4.2E-09 1.4E-13 82.4 8.0 32 169-201 165-196 (197)
112 1m8p_A Sulfate adenylyltransfe 98.9 7.5E-09 2.5E-13 93.5 9.8 64 128-194 498-566 (573)
113 1gtv_A TMK, thymidylate kinase 98.9 1.1E-10 3.8E-15 92.0 -2.3 66 125-190 132-209 (214)
114 2ocp_A DGK, deoxyguanosine kin 98.8 1.6E-08 5.3E-13 81.4 9.8 72 125-196 149-235 (241)
115 1zp6_A Hypothetical protein AT 98.7 2E-08 6.9E-13 77.5 7.4 64 128-194 108-175 (191)
116 2bdt_A BH3686; alpha-beta prot 98.7 4.4E-08 1.5E-12 75.6 7.2 34 2-35 3-38 (189)
117 2p5t_B PEZT; postsegregational 98.6 1.4E-07 4.9E-12 76.5 9.6 36 1-36 32-70 (253)
118 3d3q_A TRNA delta(2)-isopenten 98.6 2.4E-08 8.1E-13 84.3 4.9 35 3-37 9-46 (340)
119 3a8t_A Adenylate isopentenyltr 98.6 1.2E-07 4E-12 79.9 9.1 33 2-34 41-74 (339)
120 1odf_A YGR205W, hypothetical 3 98.6 2.4E-07 8.1E-12 76.8 9.3 35 2-36 32-75 (290)
121 3cr8_A Sulfate adenylyltranfer 98.5 4.1E-07 1.4E-11 81.7 9.6 65 128-194 471-539 (552)
122 1z6g_A Guanylate kinase; struc 98.3 7.9E-06 2.7E-10 64.6 12.0 68 128-196 139-209 (218)
123 2axn_A 6-phosphofructo-2-kinas 98.3 9.5E-06 3.2E-10 72.5 13.8 38 2-39 36-79 (520)
124 3tvt_A Disks large 1 tumor sup 98.3 7.5E-08 2.6E-12 79.8 -0.7 72 127-201 211-283 (292)
125 1kjw_A Postsynaptic density pr 98.3 1.2E-07 4.3E-12 78.7 0.5 93 107-202 194-289 (295)
126 3crm_A TRNA delta(2)-isopenten 98.2 8.4E-07 2.9E-11 74.4 3.7 33 2-34 6-39 (323)
127 2xkx_A Disks large homolog 4; 98.1 2.4E-06 8E-11 79.3 6.3 93 107-202 620-715 (721)
128 1p6x_A Thymidine kinase; P-loo 98.1 8.3E-06 2.8E-10 68.7 8.9 22 2-23 8-29 (334)
129 1bif_A 6-phosphofructo-2-kinas 98.0 4.5E-05 1.6E-09 67.2 11.9 36 2-37 40-81 (469)
130 3exa_A TRNA delta(2)-isopenten 98.0 3.9E-06 1.3E-10 69.9 4.2 33 2-34 4-37 (322)
131 3foz_A TRNA delta(2)-isopenten 98.0 4.6E-06 1.6E-10 69.4 4.0 33 2-34 11-44 (316)
132 3tsz_A Tight junction protein 97.9 1.3E-05 4.5E-10 69.0 6.2 96 106-202 288-388 (391)
133 2qmh_A HPR kinase/phosphorylas 97.8 1.5E-05 5.1E-10 62.1 4.1 33 2-34 35-67 (205)
134 3eph_A TRNA isopentenyltransfe 97.8 8.7E-06 3E-10 70.1 3.1 32 2-33 3-35 (409)
135 4gp7_A Metallophosphoesterase; 97.8 1.7E-05 5.6E-10 60.3 3.6 32 2-34 10-41 (171)
136 1ye8_A Protein THEP1, hypothet 97.7 1.8E-05 6E-10 60.7 3.2 24 2-25 1-25 (178)
137 3shw_A Tight junction protein 97.7 2.6E-05 9.1E-10 68.4 4.6 94 107-201 281-379 (468)
138 3kfv_A Tight junction protein 97.7 0.00012 4E-09 60.9 7.5 96 107-203 198-298 (308)
139 1xjc_A MOBB protein homolog; s 97.6 3.2E-05 1.1E-09 58.8 3.4 22 1-22 4-25 (169)
140 2f1r_A Molybdopterin-guanine d 97.6 1.6E-05 5.3E-10 60.7 1.5 22 1-22 2-23 (171)
141 1g8f_A Sulfate adenylyltransfe 97.6 3E-05 1E-09 68.8 3.1 25 2-26 396-421 (511)
142 3czq_A Putative polyphosphate 97.6 0.00026 8.7E-09 58.6 8.4 34 2-35 87-124 (304)
143 3tqf_A HPR(Ser) kinase; transf 97.6 5E-05 1.7E-09 57.8 3.8 32 3-34 18-49 (181)
144 1np6_A Molybdopterin-guanine d 97.6 4.5E-05 1.5E-09 58.2 3.4 22 1-22 6-27 (174)
145 1znw_A Guanylate kinase, GMP k 97.5 4.4E-05 1.5E-09 59.6 3.3 20 3-22 22-41 (207)
146 3t15_A Ribulose bisphosphate c 97.5 4.3E-05 1.5E-09 63.1 3.0 30 2-31 37-67 (293)
147 2x8a_A Nuclear valosin-contain 97.5 6.5E-05 2.2E-09 61.5 3.8 28 4-31 47-75 (274)
148 1lv7_A FTSH; alpha/beta domain 97.5 5.8E-05 2E-09 60.8 3.3 29 3-31 47-76 (257)
149 3ec2_A DNA replication protein 97.4 6.4E-05 2.2E-09 57.2 2.9 33 3-35 40-79 (180)
150 4dey_A Voltage-dependent L-typ 97.4 0.00059 2E-08 57.1 8.9 90 106-196 228-322 (337)
151 1c9k_A COBU, adenosylcobinamid 97.4 7.8E-05 2.7E-09 57.2 3.2 27 3-29 1-27 (180)
152 3cf0_A Transitional endoplasmi 97.4 0.0001 3.6E-09 60.9 3.9 29 3-31 51-80 (301)
153 1htw_A HI0065; nucleotide-bind 97.4 9.8E-05 3.4E-09 55.4 3.3 20 3-22 35-54 (158)
154 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.0001 3.5E-09 59.2 3.6 28 3-30 41-69 (262)
155 3tif_A Uncharacterized ABC tra 97.4 8.6E-05 2.9E-09 59.4 3.0 20 3-22 33-52 (235)
156 4b4t_K 26S protease regulatory 97.4 8.3E-05 2.9E-09 64.6 3.1 30 3-32 208-238 (428)
157 1ixz_A ATP-dependent metallopr 97.4 0.00013 4.6E-09 58.5 4.1 27 4-30 52-79 (254)
158 2ehv_A Hypothetical protein PH 97.4 0.0001 3.5E-09 58.7 3.3 20 3-22 32-51 (251)
159 4b4t_M 26S protease regulatory 97.4 8.7E-05 3E-09 64.6 3.1 29 3-31 217-246 (434)
160 3b9p_A CG5977-PA, isoform A; A 97.4 0.00013 4.5E-09 59.9 4.0 29 3-31 56-85 (297)
161 4b4t_L 26S protease subunit RP 97.3 9.1E-05 3.1E-09 64.6 3.1 29 3-31 217-246 (437)
162 4b4t_J 26S protease regulatory 97.3 9.2E-05 3.1E-09 63.8 3.0 29 3-31 184-213 (405)
163 4a74_A DNA repair and recombin 97.3 0.0001 3.5E-09 57.9 3.1 20 3-22 27-46 (231)
164 3cf2_A TER ATPase, transitiona 97.3 0.00048 1.6E-08 64.3 7.9 30 3-32 240-270 (806)
165 3h4m_A Proteasome-activating n 97.3 0.00016 5.4E-09 58.9 4.0 29 3-31 53-82 (285)
166 2pcj_A ABC transporter, lipopr 97.3 0.0001 3.5E-09 58.5 2.8 20 3-22 32-51 (224)
167 3hws_A ATP-dependent CLP prote 97.3 0.00016 5.6E-09 61.3 4.1 31 3-33 53-84 (363)
168 2onk_A Molybdate/tungstate ABC 97.3 0.00014 4.8E-09 58.4 3.3 20 3-22 26-45 (240)
169 2r2a_A Uncharacterized protein 97.3 0.00015 5.3E-09 56.5 3.4 22 1-22 5-26 (199)
170 2eyu_A Twitching motility prot 97.2 0.00016 5.4E-09 58.8 3.4 20 3-22 27-46 (261)
171 3gfo_A Cobalt import ATP-bindi 97.2 0.00014 4.7E-09 59.7 3.0 20 3-22 36-55 (275)
172 2cbz_A Multidrug resistance-as 97.2 0.00014 4.8E-09 58.2 3.0 20 3-22 33-52 (237)
173 3b85_A Phosphate starvation-in 97.2 0.00013 4.4E-09 57.3 2.7 20 3-22 24-43 (208)
174 1iy2_A ATP-dependent metallopr 97.2 0.00022 7.4E-09 58.2 4.1 27 4-30 76-103 (278)
175 4g1u_C Hemin import ATP-bindin 97.2 0.00015 5E-09 59.2 3.0 20 3-22 39-58 (266)
176 2ff7_A Alpha-hemolysin translo 97.2 0.00016 5.4E-09 58.3 3.0 20 3-22 37-56 (247)
177 1g41_A Heat shock protein HSLU 97.2 0.00022 7.4E-09 62.3 4.0 31 3-33 52-83 (444)
178 4b4t_I 26S protease regulatory 97.2 0.00016 5.5E-09 62.7 3.1 29 3-31 218-247 (437)
179 1b0u_A Histidine permease; ABC 97.2 0.00016 5.5E-09 58.8 3.0 20 3-22 34-53 (262)
180 1in4_A RUVB, holliday junction 97.2 0.00018 6.3E-09 60.4 3.4 27 2-28 52-79 (334)
181 1mv5_A LMRA, multidrug resista 97.2 0.00017 5.8E-09 57.9 3.0 20 3-22 30-49 (243)
182 1ji0_A ABC transporter; ATP bi 97.2 0.00017 5.8E-09 57.8 3.0 20 3-22 34-53 (240)
183 2i3b_A HCR-ntpase, human cance 97.2 0.00017 5.8E-09 55.7 2.9 20 3-22 3-22 (189)
184 4b4t_H 26S protease regulatory 97.2 0.00015 5.2E-09 63.3 2.9 29 3-31 245-274 (467)
185 1sgw_A Putative ABC transporte 97.2 0.00015 5.1E-09 57.2 2.6 20 3-22 37-56 (214)
186 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00019 6.7E-09 57.8 3.3 21 3-23 31-51 (250)
187 1g6h_A High-affinity branched- 97.2 0.00017 6E-09 58.4 3.0 20 3-22 35-54 (257)
188 1d2n_A N-ethylmaleimide-sensit 97.2 0.00022 7.4E-09 57.9 3.6 29 3-31 66-95 (272)
189 2pze_A Cystic fibrosis transme 97.2 0.00018 6.2E-09 57.3 3.0 20 3-22 36-55 (229)
190 2kjq_A DNAA-related protein; s 97.2 0.00016 5.4E-09 53.6 2.5 20 3-22 38-57 (149)
191 2dyk_A GTP-binding protein; GT 97.2 0.00026 8.8E-09 52.0 3.7 23 1-23 1-23 (161)
192 2olj_A Amino acid ABC transpor 97.2 0.00018 6.1E-09 58.6 3.0 20 3-22 52-71 (263)
193 1vpl_A ABC transporter, ATP-bi 97.2 0.00019 6.6E-09 58.1 3.0 20 3-22 43-62 (256)
194 2v9p_A Replication protein E1; 97.2 0.00021 7.2E-09 59.4 3.3 21 3-23 128-148 (305)
195 1um8_A ATP-dependent CLP prote 97.2 0.00027 9.4E-09 60.1 4.1 30 3-32 74-104 (376)
196 2zu0_C Probable ATP-dependent 97.1 0.00022 7.7E-09 58.1 3.3 21 3-23 48-68 (267)
197 2ixe_A Antigen peptide transpo 97.1 0.0002 7E-09 58.5 3.0 20 3-22 47-66 (271)
198 3eie_A Vacuolar protein sortin 97.1 0.00024 8.3E-09 59.3 3.5 29 3-31 53-82 (322)
199 2ghi_A Transport protein; mult 97.1 0.00021 7.2E-09 58.0 3.0 20 3-22 48-67 (260)
200 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00024 8.4E-09 55.6 3.3 20 3-22 25-44 (235)
201 2cvh_A DNA repair and recombin 97.1 0.00025 8.5E-09 55.3 3.3 30 3-32 22-54 (220)
202 2qi9_C Vitamin B12 import ATP- 97.1 0.00022 7.6E-09 57.5 3.0 20 3-22 28-47 (249)
203 1nij_A Hypothetical protein YJ 97.1 0.00018 6E-09 60.2 2.4 22 1-22 4-25 (318)
204 2ihy_A ABC transporter, ATP-bi 97.1 0.00023 7.7E-09 58.5 3.0 20 3-22 49-68 (279)
205 1jbk_A CLPB protein; beta barr 97.1 0.00025 8.7E-09 53.4 3.1 20 3-22 45-64 (195)
206 2yz2_A Putative ABC transporte 97.1 0.00023 8E-09 57.9 3.0 20 3-22 35-54 (266)
207 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.0003 1E-08 58.8 3.7 28 3-30 47-76 (322)
208 1ofh_A ATP-dependent HSL prote 97.1 0.00027 9.3E-09 58.0 3.4 28 3-30 52-80 (310)
209 2nq2_C Hypothetical ABC transp 97.1 0.00025 8.4E-09 57.4 2.9 20 3-22 33-52 (253)
210 2qp9_X Vacuolar protein sortin 97.1 0.00027 9.1E-09 60.0 3.2 28 4-31 87-115 (355)
211 3n70_A Transport activator; si 97.1 0.0003 1E-08 51.7 3.1 20 4-23 27-46 (145)
212 1svm_A Large T antigen; AAA+ f 97.1 0.00028 9.7E-09 60.4 3.4 69 127-212 302-370 (377)
213 2r62_A Cell division protease 97.1 0.00011 3.6E-09 59.5 0.5 27 4-30 47-74 (268)
214 1rj9_A FTSY, signal recognitio 97.1 0.0003 1E-08 58.4 3.3 21 2-22 103-123 (304)
215 3fvq_A Fe(3+) IONS import ATP- 97.1 0.00028 9.7E-09 59.9 3.1 20 3-22 32-51 (359)
216 3pfi_A Holliday junction ATP-d 97.1 0.00041 1.4E-08 58.0 4.1 30 3-32 57-87 (338)
217 3d8b_A Fidgetin-like protein 1 97.0 0.0004 1.4E-08 58.9 3.9 29 3-31 119-148 (357)
218 2pjz_A Hypothetical protein ST 97.0 0.0003 1E-08 57.2 3.0 20 3-22 32-51 (263)
219 1n0w_A DNA repair protein RAD5 97.0 0.00035 1.2E-08 55.3 3.3 20 3-22 26-45 (243)
220 3bos_A Putative DNA replicatio 97.0 0.00033 1.1E-08 55.1 3.1 33 2-34 53-91 (242)
221 3sop_A Neuronal-specific septi 97.0 0.00036 1.2E-08 57.0 3.3 21 2-22 3-23 (270)
222 3czp_A Putative polyphosphate 97.0 0.0055 1.9E-07 54.2 11.0 35 2-36 44-82 (500)
223 2w58_A DNAI, primosome compone 97.0 0.00042 1.5E-08 53.4 3.4 21 2-22 55-75 (202)
224 3rlf_A Maltose/maltodextrin im 97.0 0.00037 1.3E-08 59.6 3.3 20 3-22 31-50 (381)
225 1sxj_A Activator 1 95 kDa subu 97.0 0.00049 1.7E-08 61.3 4.1 30 2-31 78-108 (516)
226 1z47_A CYSA, putative ABC-tran 97.0 0.00039 1.3E-08 59.0 3.3 20 3-22 43-62 (355)
227 1lw7_A Transcriptional regulat 97.0 0.00037 1.3E-08 59.2 3.2 21 2-22 171-191 (365)
228 2p65_A Hypothetical protein PF 97.0 0.00027 9.4E-09 53.2 2.2 20 3-22 45-64 (187)
229 2yyz_A Sugar ABC transporter, 97.0 0.00039 1.3E-08 59.1 3.3 20 3-22 31-50 (359)
230 3tui_C Methionine import ATP-b 97.0 0.0004 1.4E-08 59.1 3.3 20 3-22 56-75 (366)
231 1cr0_A DNA primase/helicase; R 97.0 0.00039 1.3E-08 57.2 3.1 20 3-22 37-56 (296)
232 1ko7_A HPR kinase/phosphatase; 97.0 0.00052 1.8E-08 57.2 3.8 32 3-34 146-177 (314)
233 1vma_A Cell division protein F 97.0 0.00048 1.6E-08 57.3 3.7 33 2-34 105-143 (306)
234 3b9q_A Chloroplast SRP recepto 97.0 0.00048 1.6E-08 57.1 3.7 21 2-22 101-121 (302)
235 3jvv_A Twitching mobility prot 97.0 0.00042 1.4E-08 58.8 3.3 20 3-22 125-144 (356)
236 2it1_A 362AA long hypothetical 97.0 0.00042 1.4E-08 59.0 3.3 20 3-22 31-50 (362)
237 3nh6_A ATP-binding cassette SU 97.0 0.00027 9.3E-09 58.8 2.1 20 3-22 82-101 (306)
238 2ce7_A Cell division protein F 96.9 0.00043 1.5E-08 61.0 3.4 29 3-31 51-80 (476)
239 1v43_A Sugar-binding transport 96.9 0.00044 1.5E-08 59.1 3.3 20 3-22 39-58 (372)
240 1knx_A Probable HPR(Ser) kinas 96.9 0.00051 1.8E-08 57.1 3.6 32 3-34 149-180 (312)
241 1g29_1 MALK, maltose transport 96.9 0.00046 1.6E-08 59.0 3.3 20 3-22 31-50 (372)
242 2bbs_A Cystic fibrosis transme 96.9 0.0004 1.4E-08 57.3 2.8 20 3-22 66-85 (290)
243 3vfd_A Spastin; ATPase, microt 96.9 0.00057 2E-08 58.5 3.9 29 3-31 150-179 (389)
244 3e70_C DPA, signal recognition 96.9 0.00049 1.7E-08 57.8 3.3 21 2-22 130-150 (328)
245 1l8q_A Chromosomal replication 96.9 0.00051 1.7E-08 57.2 3.3 33 3-35 39-77 (324)
246 3d31_A Sulfate/molybdate ABC t 96.9 0.00036 1.2E-08 59.1 2.4 20 3-22 28-47 (348)
247 2wsm_A Hydrogenase expression/ 96.9 0.0006 2.1E-08 53.2 3.5 22 1-22 30-51 (221)
248 2gza_A Type IV secretion syste 96.9 0.00041 1.4E-08 59.0 2.7 21 3-23 177-197 (361)
249 3co5_A Putative two-component 96.9 0.0003 1E-08 51.5 1.6 20 4-23 30-49 (143)
250 3gd7_A Fusion complex of cysti 96.9 0.00052 1.8E-08 58.9 3.1 20 3-22 49-68 (390)
251 2dhr_A FTSH; AAA+ protein, hex 96.9 0.00071 2.4E-08 60.0 4.1 28 4-31 67-95 (499)
252 2wji_A Ferrous iron transport 96.9 0.00075 2.6E-08 50.2 3.7 22 2-23 4-25 (165)
253 1tue_A Replication protein E1; 96.9 0.0004 1.4E-08 54.3 2.2 21 3-23 60-80 (212)
254 1njg_A DNA polymerase III subu 96.9 0.00062 2.1E-08 53.1 3.3 20 3-22 47-66 (250)
255 3kta_A Chromosome segregation 96.9 0.0006 2E-08 51.7 3.1 20 3-22 28-47 (182)
256 2c9o_A RUVB-like 1; hexameric 96.8 0.00057 1.9E-08 59.9 3.4 29 3-31 65-96 (456)
257 2ewv_A Twitching motility prot 96.8 0.00058 2E-08 58.3 3.3 20 3-22 138-157 (372)
258 1nlf_A Regulatory protein REPA 96.8 0.00061 2.1E-08 55.6 3.1 20 3-22 32-51 (279)
259 1oix_A RAS-related protein RAB 96.8 0.00071 2.4E-08 51.7 3.3 22 2-23 30-51 (191)
260 2zan_A Vacuolar protein sortin 96.8 0.00076 2.6E-08 58.9 3.8 29 3-31 169-199 (444)
261 1oxx_K GLCV, glucose, ABC tran 96.8 0.00037 1.2E-08 59.1 1.7 20 3-22 33-52 (353)
262 2chg_A Replication factor C sm 96.8 0.00067 2.3E-08 52.3 3.1 20 3-22 40-59 (226)
263 3iby_A Ferrous iron transport 96.8 0.00067 2.3E-08 54.8 3.1 22 1-22 1-22 (256)
264 2dr3_A UPF0273 protein PH0284; 96.8 0.0007 2.4E-08 53.6 3.1 20 3-22 25-44 (247)
265 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00047 1.6E-08 57.9 2.2 20 3-22 173-192 (330)
266 2qm8_A GTPase/ATPase; G protei 96.8 0.00073 2.5E-08 56.9 3.3 21 2-22 56-76 (337)
267 3syl_A Protein CBBX; photosynt 96.8 0.00065 2.2E-08 55.9 2.9 20 3-22 69-88 (309)
268 2og2_A Putative signal recogni 96.8 0.00084 2.9E-08 57.0 3.6 21 2-22 158-178 (359)
269 1e2k_A Thymidine kinase; trans 96.7 0.00057 2E-08 57.4 2.5 22 2-23 5-26 (331)
270 2f9l_A RAB11B, member RAS onco 96.7 0.00093 3.2E-08 51.3 3.5 22 2-23 6-27 (199)
271 2www_A Methylmalonic aciduria 96.7 0.00086 2.9E-08 56.7 3.5 21 2-22 75-95 (349)
272 3pvs_A Replication-associated 96.7 0.0011 3.8E-08 58.0 4.1 29 3-31 52-81 (447)
273 1p9r_A General secretion pathw 96.7 0.00087 3E-08 58.1 3.3 20 3-22 169-188 (418)
274 4fcw_A Chaperone protein CLPB; 96.7 0.00082 2.8E-08 55.3 3.0 21 3-23 49-69 (311)
275 2cxx_A Probable GTP-binding pr 96.7 0.0009 3.1E-08 50.5 3.0 23 1-23 1-23 (190)
276 1fnn_A CDC6P, cell division co 96.7 0.00093 3.2E-08 56.5 3.4 21 2-22 45-65 (389)
277 3hu3_A Transitional endoplasmi 96.7 0.0011 3.8E-08 58.6 3.9 29 3-31 240-269 (489)
278 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00074 2.5E-08 59.3 2.7 20 3-22 140-159 (460)
279 1pzn_A RAD51, DNA repair and r 96.7 0.0009 3.1E-08 56.6 3.1 21 2-22 132-152 (349)
280 2yhs_A FTSY, cell division pro 96.7 0.00097 3.3E-08 58.9 3.3 21 2-22 294-314 (503)
281 2px0_A Flagellar biosynthesis 96.6 0.001 3.5E-08 55.0 3.1 33 2-34 106-145 (296)
282 2hf9_A Probable hydrogenase ni 96.6 0.0012 4.2E-08 51.6 3.5 21 2-22 39-59 (226)
283 1hqc_A RUVB; extended AAA-ATPa 96.6 0.00074 2.5E-08 55.9 2.3 27 3-29 40-67 (324)
284 1yrb_A ATP(GTP)binding protein 96.6 0.0015 5.1E-08 52.3 4.0 31 2-32 15-50 (262)
285 2r44_A Uncharacterized protein 96.6 0.0011 3.8E-08 55.2 3.3 26 4-29 49-75 (331)
286 2orw_A Thymidine kinase; TMTK, 96.6 0.0011 3.9E-08 50.7 3.1 21 2-22 4-24 (184)
287 1zu4_A FTSY; GTPase, signal re 96.6 0.0014 4.7E-08 54.8 3.7 33 2-34 106-144 (320)
288 3uk6_A RUVB-like 2; hexameric 96.6 0.0011 3.8E-08 55.8 3.2 21 2-22 71-91 (368)
289 2qby_B CDC6 homolog 3, cell di 96.6 0.0012 4.1E-08 55.8 3.3 21 2-22 46-66 (384)
290 2ce2_X GTPase HRAS; signaling 96.6 0.0015 5.2E-08 47.7 3.5 21 2-22 4-24 (166)
291 3u61_B DNA polymerase accessor 96.6 0.0012 4.1E-08 54.8 3.2 30 2-31 49-79 (324)
292 2yv5_A YJEQ protein; hydrolase 96.6 0.0013 4.3E-08 54.6 3.3 20 3-22 167-186 (302)
293 1ypw_A Transitional endoplasmi 96.6 0.0012 4.2E-08 61.9 3.6 30 3-32 240-270 (806)
294 2qby_A CDC6 homolog 1, cell di 96.6 0.0011 3.8E-08 55.8 3.0 30 3-32 47-83 (386)
295 1sxj_C Activator 1 40 kDa subu 96.5 0.0012 4E-08 55.4 3.0 20 4-23 49-68 (340)
296 3czp_A Putative polyphosphate 96.5 0.0085 2.9E-07 53.0 8.6 35 2-36 301-339 (500)
297 3p32_A Probable GTPase RV1496/ 96.5 0.0015 5E-08 55.4 3.6 31 2-32 80-116 (355)
298 1of1_A Thymidine kinase; trans 96.5 0.0013 4.3E-08 56.1 3.2 22 2-23 50-71 (376)
299 2v1u_A Cell division control p 96.5 0.00089 3E-08 56.5 2.3 20 3-22 46-65 (387)
300 3m6a_A ATP-dependent protease 96.5 0.0014 4.7E-08 58.8 3.5 25 3-27 110-135 (543)
301 2oap_1 GSPE-2, type II secreti 96.5 0.001 3.4E-08 59.2 2.6 20 3-22 262-281 (511)
302 1z2a_A RAS-related protein RAB 96.5 0.0017 5.9E-08 47.7 3.5 22 2-23 6-27 (168)
303 3k53_A Ferrous iron transport 96.5 0.0015 5.2E-08 53.0 3.4 21 2-22 4-24 (271)
304 2wjg_A FEOB, ferrous iron tran 96.5 0.0017 5.9E-08 48.9 3.5 22 2-23 8-29 (188)
305 2zej_A Dardarin, leucine-rich 96.5 0.0014 4.8E-08 49.6 3.0 22 2-23 3-24 (184)
306 1pui_A ENGB, probable GTP-bind 96.5 0.00082 2.8E-08 51.8 1.6 21 2-22 27-47 (210)
307 3euj_A Chromosome partition pr 96.5 0.0014 4.9E-08 57.7 3.3 20 3-22 31-50 (483)
308 1sxj_E Activator 1 40 kDa subu 96.5 0.0012 4E-08 55.4 2.6 20 4-23 39-58 (354)
309 3q85_A GTP-binding protein REM 96.5 0.0017 5.7E-08 48.0 3.2 21 2-22 3-23 (169)
310 2rcn_A Probable GTPase ENGC; Y 96.5 0.0016 5.3E-08 55.3 3.3 20 3-22 217-236 (358)
311 2bjv_A PSP operon transcriptio 96.5 0.0015 5.1E-08 52.6 3.1 21 3-23 31-51 (265)
312 1tq4_A IIGP1, interferon-induc 96.5 0.0014 4.9E-08 56.6 3.1 20 3-22 71-90 (413)
313 2gj8_A MNME, tRNA modification 96.5 0.0018 6.1E-08 48.6 3.3 22 2-23 5-26 (172)
314 3kl4_A SRP54, signal recogniti 96.4 0.0016 5.3E-08 56.7 3.3 33 2-34 98-136 (433)
315 2b8t_A Thymidine kinase; deoxy 96.4 0.0028 9.7E-08 50.1 4.5 21 2-22 13-33 (223)
316 1cp2_A CP2, nitrogenase iron p 96.4 0.0026 8.7E-08 51.3 4.4 33 1-33 1-39 (269)
317 2qag_B Septin-6, protein NEDD5 96.4 0.0014 4.8E-08 56.8 2.9 19 4-22 45-63 (427)
318 1yqt_A RNAse L inhibitor; ATP- 96.4 0.0016 5.4E-08 58.3 3.3 20 3-22 49-68 (538)
319 2j37_W Signal recognition part 96.4 0.0018 6.1E-08 57.5 3.6 33 2-34 102-140 (504)
320 1sxj_D Activator 1 41 kDa subu 96.4 0.0016 5.4E-08 54.4 3.1 19 4-22 61-79 (353)
321 3lda_A DNA repair protein RAD5 96.4 0.0016 5.4E-08 56.2 3.1 20 3-22 180-199 (400)
322 2ged_A SR-beta, signal recogni 96.4 0.002 6.8E-08 48.9 3.4 22 2-23 49-70 (193)
323 1u8z_A RAS-related protein RAL 96.4 0.0022 7.4E-08 47.0 3.5 22 2-23 5-26 (168)
324 1kao_A RAP2A; GTP-binding prot 96.4 0.0022 7.4E-08 47.0 3.5 21 2-22 4-24 (167)
325 3dm5_A SRP54, signal recogniti 96.4 0.0028 9.5E-08 55.3 4.6 33 2-34 101-139 (443)
326 1u0l_A Probable GTPase ENGC; p 96.4 0.0015 5.2E-08 54.0 2.9 20 3-22 171-190 (301)
327 3q72_A GTP-binding protein RAD 96.4 0.0019 6.4E-08 47.6 3.1 21 2-22 3-23 (166)
328 1g16_A RAS-related protein SEC 96.4 0.0019 6.5E-08 47.6 3.0 22 2-23 4-25 (170)
329 3ozx_A RNAse L inhibitor; ATP 96.4 0.0016 5.6E-08 58.2 3.0 20 3-22 296-315 (538)
330 2p67_A LAO/AO transport system 96.4 0.002 7E-08 54.2 3.4 21 2-22 57-77 (341)
331 1nrj_B SR-beta, signal recogni 96.4 0.0022 7.6E-08 49.7 3.4 22 2-23 13-34 (218)
332 2erx_A GTP-binding protein DI- 96.3 0.0025 8.5E-08 47.0 3.5 22 2-23 4-25 (172)
333 2afh_E Nitrogenase iron protei 96.3 0.0032 1.1E-07 51.4 4.4 33 1-33 2-40 (289)
334 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0023 7.9E-08 53.4 3.5 29 3-31 125-156 (331)
335 1ls1_A Signal recognition part 96.3 0.0024 8.2E-08 52.7 3.6 21 2-22 99-119 (295)
336 2nzj_A GTP-binding protein REM 96.3 0.0026 8.8E-08 47.2 3.5 21 2-22 5-25 (175)
337 2z4s_A Chromosomal replication 96.3 0.0018 6.3E-08 56.4 3.0 20 3-22 132-151 (440)
338 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0025 8.4E-08 47.1 3.3 20 3-22 25-44 (149)
339 1ky3_A GTP-binding protein YPT 96.3 0.0026 8.9E-08 47.4 3.5 21 2-22 9-29 (182)
340 3tw8_B RAS-related protein RAB 96.3 0.0021 7.3E-08 47.8 3.0 21 2-22 10-30 (181)
341 2zts_A Putative uncharacterize 96.3 0.0023 7.8E-08 50.6 3.3 20 3-22 32-51 (251)
342 1wms_A RAB-9, RAB9, RAS-relate 96.3 0.0027 9.1E-08 47.2 3.5 21 2-22 8-28 (177)
343 3b5x_A Lipid A export ATP-bind 96.3 0.002 6.7E-08 58.2 3.2 20 3-22 371-390 (582)
344 1c1y_A RAS-related protein RAP 96.3 0.0028 9.5E-08 46.5 3.5 21 3-23 5-25 (167)
345 3ozx_A RNAse L inhibitor; ATP 96.3 0.0019 6.4E-08 57.8 3.0 20 3-22 27-46 (538)
346 2dby_A GTP-binding protein; GD 96.3 0.0018 6.2E-08 55.1 2.8 22 1-22 1-22 (368)
347 2qen_A Walker-type ATPase; unk 96.3 0.0027 9.2E-08 52.7 3.8 31 3-33 33-64 (350)
348 2lkc_A Translation initiation 96.3 0.0027 9.1E-08 47.3 3.4 22 2-23 9-30 (178)
349 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0021 7.2E-08 57.5 3.3 20 3-22 314-333 (538)
350 3bc1_A RAS-related protein RAB 96.3 0.0024 8.1E-08 48.1 3.2 22 2-23 12-33 (195)
351 1ek0_A Protein (GTP-binding pr 96.3 0.0028 9.7E-08 46.6 3.5 20 3-22 5-24 (170)
352 1z08_A RAS-related protein RAB 96.3 0.0028 9.7E-08 46.7 3.5 21 2-22 7-27 (170)
353 3b60_A Lipid A export ATP-bind 96.3 0.0018 6.1E-08 58.5 2.8 20 3-22 371-390 (582)
354 1svi_A GTP-binding protein YSX 96.3 0.0024 8.3E-08 48.4 3.2 22 2-23 24-45 (195)
355 1osn_A Thymidine kinase, VZV-T 96.3 0.002 6.9E-08 54.2 2.8 22 2-23 13-35 (341)
356 3pqc_A Probable GTP-binding pr 96.3 0.0025 8.4E-08 48.2 3.1 22 2-23 24-45 (195)
357 1z0j_A RAB-22, RAS-related pro 96.3 0.003 1E-07 46.5 3.5 20 3-22 8-27 (170)
358 1z0f_A RAB14, member RAS oncog 96.3 0.0026 8.8E-08 47.3 3.2 22 2-23 16-37 (179)
359 3hr8_A Protein RECA; alpha and 96.2 0.0023 8E-08 54.2 3.1 20 3-22 63-82 (356)
360 3j16_B RLI1P; ribosome recycli 96.2 0.0023 7.9E-08 58.1 3.3 20 3-22 105-124 (608)
361 3te6_A Regulatory protein SIR3 96.2 0.0018 6.2E-08 54.0 2.4 21 2-22 46-66 (318)
362 3con_A GTPase NRAS; structural 96.2 0.003 1E-07 47.7 3.5 20 3-22 23-42 (190)
363 2qgz_A Helicase loader, putati 96.2 0.0024 8E-08 53.0 3.1 35 3-37 154-195 (308)
364 3cf2_A TER ATPase, transitiona 96.2 0.0024 8E-08 59.7 3.4 29 4-32 514-543 (806)
365 2fn4_A P23, RAS-related protei 96.2 0.0029 9.8E-08 47.1 3.3 21 2-22 10-30 (181)
366 3pxg_A Negative regulator of g 96.2 0.0022 7.6E-08 56.3 3.0 20 3-22 203-222 (468)
367 3rhf_A Putative polyphosphate 96.2 0.028 9.4E-07 46.0 9.2 35 2-36 76-114 (289)
368 1r2q_A RAS-related protein RAB 96.2 0.0033 1.1E-07 46.2 3.5 20 3-22 8-27 (170)
369 1g8p_A Magnesium-chelatase 38 96.2 0.0014 4.6E-08 54.8 1.5 20 4-23 48-67 (350)
370 3j16_B RLI1P; ribosome recycli 96.2 0.0025 8.6E-08 57.8 3.3 20 3-22 380-399 (608)
371 1zcb_A G alpha I/13; GTP-bindi 96.2 0.0029 1E-07 53.7 3.5 22 1-22 33-54 (362)
372 3bk7_A ABC transporter ATP-bin 96.2 0.0025 8.7E-08 57.8 3.3 20 3-22 384-403 (607)
373 1upt_A ARL1, ADP-ribosylation 96.2 0.0036 1.2E-07 46.2 3.7 21 2-22 8-28 (171)
374 3dz8_A RAS-related protein RAB 96.2 0.0033 1.1E-07 47.7 3.5 21 2-22 24-44 (191)
375 1j8m_F SRP54, signal recogniti 96.2 0.0025 8.6E-08 52.6 3.0 33 2-34 99-137 (297)
376 2gf9_A RAS-related protein RAB 96.2 0.0029 1E-07 47.9 3.2 21 2-22 23-43 (189)
377 1tf7_A KAIC; homohexamer, hexa 96.2 0.0025 8.5E-08 56.8 3.1 19 3-21 41-59 (525)
378 4dsu_A GTPase KRAS, isoform 2B 96.2 0.0034 1.2E-07 47.1 3.5 21 2-22 5-25 (189)
379 3b1v_A Ferrous iron uptake tra 96.2 0.0034 1.2E-07 51.2 3.7 22 1-22 3-24 (272)
380 1iqp_A RFCS; clamp loader, ext 96.2 0.003 1E-07 52.0 3.4 20 3-22 48-67 (327)
381 2hxs_A RAB-26, RAS-related pro 96.2 0.0035 1.2E-07 46.6 3.5 20 3-22 8-27 (178)
382 2zr9_A Protein RECA, recombina 96.2 0.0027 9.3E-08 53.6 3.1 30 3-32 63-98 (349)
383 2y8e_A RAB-protein 6, GH09086P 96.1 0.0034 1.2E-07 46.6 3.3 20 3-22 16-35 (179)
384 2v3c_C SRP54, signal recogniti 96.1 0.002 6.7E-08 56.1 2.3 33 2-34 100-138 (432)
385 3bk7_A ABC transporter ATP-bin 96.1 0.0025 8.5E-08 57.9 3.0 20 3-22 119-138 (607)
386 2yl4_A ATP-binding cassette SU 96.1 0.0019 6.4E-08 58.5 2.2 20 3-22 372-391 (595)
387 3clv_A RAB5 protein, putative; 96.1 0.0037 1.3E-07 47.3 3.6 22 2-23 8-29 (208)
388 1zbd_A Rabphilin-3A; G protein 96.1 0.0031 1.1E-07 48.2 3.2 21 2-22 9-29 (203)
389 3lxx_A GTPase IMAP family memb 96.1 0.0034 1.2E-07 49.7 3.5 21 2-22 30-50 (239)
390 2a9k_A RAS-related protein RAL 96.1 0.0037 1.3E-07 46.7 3.5 22 2-23 19-40 (187)
391 4dzz_A Plasmid partitioning pr 96.1 0.0049 1.7E-07 47.3 4.2 32 1-32 1-39 (206)
392 3kkq_A RAS-related protein M-R 96.1 0.0039 1.3E-07 46.7 3.5 20 3-22 20-39 (183)
393 2obl_A ESCN; ATPase, hydrolase 96.1 0.003 1E-07 53.4 3.1 20 3-22 73-92 (347)
394 1ega_A Protein (GTP-binding pr 96.1 0.0032 1.1E-07 52.0 3.3 21 3-23 10-30 (301)
395 3qf4_B Uncharacterized ABC tra 96.1 0.0021 7.3E-08 58.2 2.3 20 3-22 383-402 (598)
396 2oil_A CATX-8, RAS-related pro 96.1 0.004 1.4E-07 47.2 3.5 22 2-23 26-47 (193)
397 2dpy_A FLII, flagellum-specifi 96.1 0.003 1E-07 55.0 3.1 20 3-22 159-178 (438)
398 1qhl_A Protein (cell division 96.1 0.00044 1.5E-08 55.0 -2.0 19 4-22 30-48 (227)
399 1r8s_A ADP-ribosylation factor 96.1 0.0039 1.3E-07 45.7 3.3 20 3-22 2-21 (164)
400 1t9h_A YLOQ, probable GTPase E 96.1 0.0013 4.4E-08 54.7 0.6 20 3-22 175-194 (307)
401 2bme_A RAB4A, RAS-related prot 96.1 0.0039 1.3E-07 46.8 3.3 21 2-22 11-31 (186)
402 1jr3_A DNA polymerase III subu 96.1 0.0034 1.2E-07 52.7 3.3 20 3-22 40-59 (373)
403 3tkl_A RAS-related protein RAB 96.1 0.0036 1.2E-07 47.4 3.2 21 2-22 17-37 (196)
404 3t5g_A GTP-binding protein RHE 96.1 0.004 1.4E-07 46.6 3.3 21 2-22 7-27 (181)
405 2g6b_A RAS-related protein RAB 96.0 0.0043 1.5E-07 46.2 3.5 21 3-23 12-32 (180)
406 2efe_B Small GTP-binding prote 96.0 0.0044 1.5E-07 46.2 3.5 20 3-22 14-33 (181)
407 2chq_A Replication factor C sm 96.0 0.0033 1.1E-07 51.5 3.0 20 4-23 41-60 (319)
408 4a82_A Cystic fibrosis transme 96.0 0.0018 6E-08 58.5 1.4 20 3-22 369-388 (578)
409 1v5w_A DMC1, meiotic recombina 96.0 0.0037 1.3E-07 52.6 3.4 21 2-22 123-143 (343)
410 2bov_A RAla, RAS-related prote 96.0 0.0044 1.5E-07 47.3 3.5 21 2-22 15-35 (206)
411 3bh0_A DNAB-like replicative h 96.0 0.0037 1.3E-07 52.0 3.3 20 3-22 70-89 (315)
412 1m7b_A RND3/RHOE small GTP-bin 96.0 0.0042 1.4E-07 46.8 3.3 22 2-23 8-29 (184)
413 3szr_A Interferon-induced GTP- 96.0 0.0022 7.7E-08 58.2 2.0 21 2-22 46-66 (608)
414 1u94_A RECA protein, recombina 96.0 0.0053 1.8E-07 52.0 4.2 31 2-32 64-100 (356)
415 1mh1_A RAC1; GTP-binding, GTPa 96.0 0.0047 1.6E-07 46.2 3.5 20 3-22 7-26 (186)
416 3ihw_A Centg3; RAS, centaurin, 96.0 0.0047 1.6E-07 46.8 3.5 20 3-22 22-41 (184)
417 2z43_A DNA repair and recombin 96.0 0.0037 1.3E-07 52.1 3.1 20 3-22 109-128 (324)
418 1fzq_A ADP-ribosylation factor 96.0 0.0042 1.4E-07 46.8 3.2 22 2-23 17-38 (181)
419 2qnr_A Septin-2, protein NEDD5 96.0 0.0037 1.3E-07 51.7 3.0 20 3-22 20-39 (301)
420 1m2o_B GTP-binding protein SAR 96.0 0.0042 1.4E-07 47.3 3.1 21 3-23 25-45 (190)
421 1vg8_A RAS-related protein RAB 96.0 0.0048 1.6E-07 47.2 3.5 21 2-22 9-29 (207)
422 2xtp_A GTPase IMAP family memb 96.0 0.0045 1.6E-07 49.6 3.5 21 2-22 23-43 (260)
423 1u0j_A DNA replication protein 96.0 0.004 1.4E-07 50.6 3.1 21 3-23 106-126 (267)
424 3end_A Light-independent proto 96.0 0.0068 2.3E-07 49.9 4.6 33 1-33 41-79 (307)
425 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.0029 1E-07 56.0 2.5 21 3-23 43-63 (500)
426 3qf4_A ABC transporter, ATP-bi 95.9 0.0024 8.2E-08 57.8 1.9 20 3-22 371-390 (587)
427 2p5s_A RAS and EF-hand domain 95.9 0.0054 1.8E-07 46.9 3.7 22 2-23 29-50 (199)
428 1moz_A ARL1, ADP-ribosylation 95.9 0.0034 1.2E-07 47.0 2.5 21 2-22 19-39 (183)
429 1ksh_A ARF-like protein 2; sma 95.9 0.0052 1.8E-07 46.2 3.5 21 2-22 19-39 (186)
430 1xx6_A Thymidine kinase; NESG, 95.9 0.0052 1.8E-07 47.4 3.5 21 2-22 9-29 (191)
431 3oes_A GTPase rhebl1; small GT 95.9 0.0048 1.6E-07 47.2 3.3 21 3-23 26-46 (201)
432 1ojl_A Transcriptional regulat 95.9 0.0041 1.4E-07 51.4 3.1 21 3-23 27-47 (304)
433 1z06_A RAS-related protein RAB 95.9 0.0053 1.8E-07 46.4 3.5 21 2-22 21-41 (189)
434 3t1o_A Gliding protein MGLA; G 95.9 0.0053 1.8E-07 46.3 3.5 20 3-22 16-35 (198)
435 2fg5_A RAB-22B, RAS-related pr 95.9 0.005 1.7E-07 46.8 3.3 20 3-22 25-44 (192)
436 1sxj_B Activator 1 37 kDa subu 95.9 0.0043 1.5E-07 51.0 3.1 19 4-22 45-63 (323)
437 3bwd_D RAC-like GTP-binding pr 95.9 0.0054 1.8E-07 45.7 3.4 22 2-23 9-30 (182)
438 3k1j_A LON protease, ATP-depen 95.9 0.0039 1.3E-07 56.5 3.1 21 3-23 62-82 (604)
439 2qu8_A Putative nucleolar GTP- 95.9 0.0052 1.8E-07 48.1 3.5 22 2-23 30-51 (228)
440 1tf7_A KAIC; homohexamer, hexa 95.9 0.0041 1.4E-07 55.4 3.1 20 3-22 283-302 (525)
441 2qag_C Septin-7; cell cycle, c 95.9 0.0037 1.3E-07 54.1 2.8 20 3-22 33-52 (418)
442 3cbq_A GTP-binding protein REM 95.9 0.0043 1.5E-07 47.5 2.8 21 2-22 24-44 (195)
443 1zd9_A ADP-ribosylation factor 95.9 0.0058 2E-07 46.2 3.5 21 3-23 24-44 (188)
444 1zj6_A ADP-ribosylation factor 95.9 0.0057 2E-07 46.1 3.5 22 2-23 17-38 (187)
445 2xxa_A Signal recognition part 95.9 0.0073 2.5E-07 52.5 4.6 34 1-34 100-140 (433)
446 1f6b_A SAR1; gtpases, N-termin 95.9 0.0047 1.6E-07 47.3 3.0 20 3-22 27-46 (198)
447 3qf7_A RAD50; ABC-ATPase, ATPa 95.9 0.0048 1.6E-07 52.4 3.3 20 3-22 25-44 (365)
448 3pxi_A Negative regulator of g 95.8 0.004 1.4E-07 57.9 3.0 20 3-22 203-222 (758)
449 3cph_A RAS-related protein SEC 95.8 0.0061 2.1E-07 46.8 3.7 21 2-22 21-41 (213)
450 2atv_A RERG, RAS-like estrogen 95.8 0.0063 2.2E-07 46.3 3.7 21 3-23 30-50 (196)
451 1x3s_A RAS-related protein RAB 95.8 0.006 2.1E-07 46.0 3.5 21 2-22 16-36 (195)
452 2r8r_A Sensor protein; KDPD, P 95.8 0.0095 3.2E-07 47.2 4.7 32 2-33 7-44 (228)
453 2i1q_A DNA repair and recombin 95.8 0.0048 1.6E-07 51.3 3.1 21 2-22 99-119 (322)
454 2ew1_A RAS-related protein RAB 95.8 0.0058 2E-07 47.1 3.3 21 2-22 27-47 (201)
455 2gf0_A GTP-binding protein DI- 95.8 0.0058 2E-07 46.3 3.3 21 2-22 9-29 (199)
456 2a5j_A RAS-related protein RAB 95.8 0.0063 2.2E-07 46.1 3.5 21 3-23 23-43 (191)
457 2h17_A ADP-ribosylation factor 95.8 0.0057 1.9E-07 45.9 3.2 22 2-23 22-43 (181)
458 2il1_A RAB12; G-protein, GDP, 95.8 0.0061 2.1E-07 46.3 3.4 20 3-22 28-47 (192)
459 4bas_A ADP-ribosylation factor 95.8 0.006 2.1E-07 46.2 3.3 22 2-23 18-39 (199)
460 3c5c_A RAS-like protein 12; GD 95.8 0.0065 2.2E-07 46.0 3.5 20 3-22 23-42 (187)
461 2qtf_A Protein HFLX, GTP-bindi 95.8 0.0055 1.9E-07 52.1 3.4 22 2-23 180-201 (364)
462 2ffh_A Protein (FFH); SRP54, s 95.8 0.0059 2E-07 53.0 3.6 33 2-34 99-137 (425)
463 2fv8_A H6, RHO-related GTP-bin 95.8 0.0061 2.1E-07 46.9 3.3 21 3-23 27-47 (207)
464 2o52_A RAS-related protein RAB 95.8 0.0062 2.1E-07 46.6 3.3 21 2-22 26-46 (200)
465 2cjw_A GTP-binding protein GEM 95.8 0.0058 2E-07 46.6 3.2 21 2-22 7-27 (192)
466 2r6a_A DNAB helicase, replicat 95.7 0.0055 1.9E-07 53.6 3.3 20 3-22 205-224 (454)
467 2fh5_B SR-beta, signal recogni 95.7 0.0061 2.1E-07 47.0 3.3 21 2-22 8-28 (214)
468 3reg_A RHO-like small GTPase; 95.7 0.0069 2.4E-07 45.9 3.5 21 3-23 25-45 (194)
469 2bcg_Y Protein YP2, GTP-bindin 95.7 0.0064 2.2E-07 46.6 3.3 21 2-22 9-29 (206)
470 3qks_A DNA double-strand break 95.7 0.0063 2.1E-07 47.2 3.3 21 2-22 24-44 (203)
471 3iev_A GTP-binding protein ERA 95.7 0.0064 2.2E-07 50.3 3.5 21 3-23 12-32 (308)
472 3lxw_A GTPase IMAP family memb 95.7 0.0067 2.3E-07 48.5 3.5 21 2-22 22-42 (247)
473 3i8s_A Ferrous iron transport 95.7 0.0065 2.2E-07 49.4 3.5 21 2-22 4-24 (274)
474 1gwn_A RHO-related GTP-binding 95.7 0.0065 2.2E-07 46.9 3.3 21 3-23 30-50 (205)
475 2iw3_A Elongation factor 3A; a 95.7 0.0054 1.9E-07 58.4 3.3 20 3-22 463-482 (986)
476 2b6h_A ADP-ribosylation factor 95.7 0.0067 2.3E-07 46.2 3.3 22 2-23 30-51 (192)
477 2iwr_A Centaurin gamma 1; ANK 95.7 0.0051 1.8E-07 45.8 2.6 21 3-23 9-29 (178)
478 3a1s_A Iron(II) transport prot 95.7 0.0069 2.4E-07 48.8 3.5 21 2-22 6-26 (258)
479 2q3h_A RAS homolog gene family 95.7 0.008 2.7E-07 45.8 3.7 21 2-22 21-41 (201)
480 2fu5_C RAS-related protein RAB 95.7 0.0036 1.2E-07 46.9 1.7 21 2-22 9-29 (183)
481 2gco_A H9, RHO-related GTP-bin 95.7 0.0071 2.4E-07 46.3 3.3 22 2-23 26-47 (201)
482 2fna_A Conserved hypothetical 95.7 0.0061 2.1E-07 50.6 3.1 30 3-32 32-64 (357)
483 2f7s_A C25KG, RAS-related prot 95.6 0.0076 2.6E-07 46.6 3.5 22 2-23 26-47 (217)
484 1jwy_B Dynamin A GTPase domain 95.6 0.0063 2.2E-07 50.1 3.2 22 2-23 25-46 (315)
485 1ni3_A YCHF GTPase, YCHF GTP-b 95.6 0.0061 2.1E-07 52.3 3.1 21 3-23 22-42 (392)
486 2j1l_A RHO-related GTP-binding 95.6 0.0074 2.5E-07 46.8 3.3 20 3-22 36-55 (214)
487 2h57_A ADP-ribosylation factor 95.6 0.0061 2.1E-07 46.1 2.8 21 2-22 22-42 (190)
488 1ypw_A Transitional endoplasmi 95.6 0.0024 8E-08 60.0 0.5 26 3-28 513-539 (806)
489 3ux8_A Excinuclease ABC, A sub 95.6 0.0036 1.2E-07 57.4 1.6 19 3-21 350-368 (670)
490 4gzl_A RAS-related C3 botulinu 95.6 0.008 2.7E-07 46.2 3.3 20 3-22 32-51 (204)
491 1r6b_X CLPA protein; AAA+, N-t 95.6 0.0061 2.1E-07 56.6 3.1 28 3-30 490-518 (758)
492 2atx_A Small GTP binding prote 95.6 0.007 2.4E-07 45.8 3.0 21 2-22 19-39 (194)
493 1wf3_A GTP-binding protein; GT 95.6 0.0082 2.8E-07 49.6 3.5 21 3-23 9-29 (301)
494 1ewq_A DNA mismatch repair pro 95.5 0.0068 2.3E-07 56.4 3.3 20 3-22 578-597 (765)
495 3e1s_A Exodeoxyribonuclease V, 95.5 0.0069 2.3E-07 54.6 3.2 27 3-29 206-236 (574)
496 2hup_A RAS-related protein RAB 95.5 0.0085 2.9E-07 45.9 3.3 22 2-23 30-51 (201)
497 2a5y_B CED-4; apoptosis; HET: 95.5 0.0083 2.8E-07 53.7 3.6 22 2-23 153-174 (549)
498 1z6t_A APAF-1, apoptotic prote 95.5 0.0079 2.7E-07 54.0 3.5 21 2-22 148-168 (591)
499 3kjh_A CO dehydrogenase/acetyl 95.5 0.0086 3E-07 47.2 3.3 32 1-33 1-38 (254)
500 4ag6_A VIRB4 ATPase, type IV s 95.5 0.01 3.5E-07 50.6 4.0 19 4-22 38-56 (392)
No 1
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=100.00 E-value=6.1e-38 Score=249.03 Aligned_cols=193 Identities=31% Similarity=0.428 Sum_probs=181.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|--|||+|++||||||+++.|+++|++++++|.+.+++.+++++.+..+.+.||..+++++|.++|..++..+|+|++.+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHHCCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecc-ccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHH
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFE-AKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRIN 159 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e-~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~ 159 (230)
++++.++||.+...+.+++.. .+.+++++|.|+++| ..+...+|.+|+++||++++.+|+++|+|.+.+++..|++
T Consensus 89 ~~L~~i~HP~I~~~~~~~~~~---~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rdg~s~eea~~ri~ 165 (210)
T 4i1u_A 89 RRLEAITHPLIRAETEREARD---AQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRNGFTREQVEAIIA 165 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHh---cCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 999999999999888777653 355689999999999 8888889999999999999999999999999999999999
Q ss_pred hcCCcccccccCCEEEeCC-CCHHHHHHHHHHHHHHhh
Q 026952 160 AQMPLDIKRNNADIVINNT-GTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 160 ~~~~~~~~~~~ad~iI~n~-~~~~~v~~~i~~~l~~~~ 196 (230)
.+++.++....||++|+|+ ++++++.+++.++++.+.
T Consensus 166 ~Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~~~~~ 203 (210)
T 4i1u_A 166 RQATREARLAAADDVIVNDAATPDALAVQVDALHQRYL 203 (210)
T ss_dssp HSCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 9999988889999999999 999999999999988764
No 2
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.97 E-value=3.5e-30 Score=204.53 Aligned_cols=193 Identities=37% Similarity=0.519 Sum_probs=158.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|++|+|+|++||||||+++.|+.+|+.++++|.+.+.+..++...+..+.+.+|...+..+|.+++..+...+|++++..
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHTTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHCCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 46899999999999999999999999999999999988777788889999999999888788899999999999999998
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA 160 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~ 160 (230)
.+++.+.+|.+...+.+.+.. ...+.++++++.+++..+...+|.+||+++|++++.+|+.+|++.+.+++..+++.
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~---~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~~~r~~~ 158 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAE---QTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRIMNS 158 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC-----CHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHh---cCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 999999999888766554432 12457889998888776667789999999999999999999988899999999998
Q ss_pred cCCcccccccCCEEEeCCCCHH----HHHHHHHHHHHHhh
Q 026952 161 QMPLDIKRNNADIVINNTGTLD----DLNEQVRKVLFEIK 196 (230)
Q Consensus 161 ~~~~~~~~~~ad~iI~n~~~~~----~v~~~i~~~l~~~~ 196 (230)
+.+..+.+..||++|+|+++++ ++.++|.++++.+.
T Consensus 159 q~~~~~~~~~ad~vIdn~~~~~~~~~~~~~~i~~~~~~~~ 198 (206)
T 1jjv_A 159 QVSQQERLKWADDVINNDAELAQNLPHLQQKVLELHQFYL 198 (206)
T ss_dssp SCCHHHHHHHCSEEEECCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHhCCEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 8887777778999999999999 99999998887543
No 3
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.97 E-value=7.2e-30 Score=212.44 Aligned_cols=198 Identities=26% Similarity=0.381 Sum_probs=173.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|++|+|+|++||||||+|+.|+++|+.++++|.+.++...++...+..+.+.+|..++.++|.+++..+...+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~~ 154 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQM 154 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHHH
Confidence 57899999999999999999998899999999999998888888888999999999988888899999999999998999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA 160 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~ 160 (230)
++++.+.+|.+...+...+......+.+++|+|++.+++..+...+|.+||+++|++++.+|+.+|++.+.+++..++..
T Consensus 155 ~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~g~s~e~~~~ri~~ 234 (281)
T 2f6r_A 155 KILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERDGLSEAAAQSRLQS 234 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999998877766655443344568999999888777767789999999999999999999988899999999998
Q ss_pred cCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCC
Q 026952 161 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 161 ~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~ 198 (230)
+++.......||++|+|+++++++.++|.+++..+...
T Consensus 235 q~~~~~~~~~AD~vIdn~~s~eel~~~I~~~l~~l~~~ 272 (281)
T 2f6r_A 235 QMSGQQLVEQSNVVLSTLWESHVTQSQVEKAWNLLQKR 272 (281)
T ss_dssp SCCHHHHHHTCSEEEECSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCChHhhHhhCCEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 87766666679999999999999999999998776543
No 4
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.97 E-value=2e-29 Score=198.36 Aligned_cols=172 Identities=31% Similarity=0.458 Sum_probs=148.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhC-CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKAN-DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~~-g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
.+|+|+|++||||||+++.|++. |++++++|.++++...+ .+..+.+.||..+++ +|.+++..++..+|++++.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~~ 88 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLE-DGKVNRKKLAGIVFESRENL 88 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHHH
Confidence 47999999999999999999965 99999999999988754 578899999999998 89999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA 160 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~ 160 (230)
.+++.+.+|.+...+...+. ...+++++|++++++..+...+|.+||++||++++.+|+. +.
T Consensus 89 ~~l~~i~hP~i~~~~~~~~~----~~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rli--------------~~ 150 (192)
T 2grj_A 89 KKLELLVHPLMKKRVQEIIN----KTSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRNR--------------EA 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----TCCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHCS--------------SH
T ss_pred HHHHhhhCHHHHHHHHHHHH----HcCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHHH--------------Hh
Confidence 99999999999877655543 2356899999999998888889999999999999999981 11
Q ss_pred cCCc--ccccccCCEEEeCCCCHHHHHHHHHHHHHHh
Q 026952 161 QMPL--DIKRNNADIVINNTGTLDDLNEQVRKVLFEI 195 (230)
Q Consensus 161 ~~~~--~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~ 195 (230)
+++. ++....||++|+|+++++++.+++.++++.+
T Consensus 151 q~~~~~~~~~~~AD~vI~n~~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 151 DRRLKFQEDIVPQGIVVANNSTLEDLEKKVEEVMKLV 187 (192)
T ss_dssp HHHHTTCTTCCCCSEEEECSSCHHHHHHHHHHHHHHH
T ss_pred cCCchhhhHHhcCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 2222 4556789999999999999999999998876
No 5
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.96 E-value=9.1e-29 Score=195.98 Aligned_cols=194 Identities=35% Similarity=0.502 Sum_probs=165.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|++|+|+|++||||||+++.|+.+|+.++++|.+.++...++...+..+.+.+|...+++++.+++..+...+|.+++..
T Consensus 1 m~~i~i~G~~GsGKSTl~~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFRELGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHTTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred CeEEEEECCCCcCHHHHHHHHHHCCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 88999999999999999999999999999999999887766677788888999988876677889999999999999998
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA 160 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~ 160 (230)
.+++.+.+|.+...+...+... .+.+++++|++.+++..+...+|.+||+++|++++.+|+.+| +.+.+++..+++.
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~--~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R-~~~~~~~~~~~~~ 157 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNL--SEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKR-GMSEEDFERRWKK 157 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHS--CTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHHT-CCCHHHHHHHHTT
T ss_pred HHHHHhhCHHHHHHHHHHHHhc--cCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHHc-CCCHHHHHHHHHh
Confidence 8888888888876655444321 121678999998888777677899999999999999999999 7888889899988
Q ss_pred cCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhC
Q 026952 161 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 197 (230)
Q Consensus 161 ~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~ 197 (230)
+.+..+....+|++|+|+++++++.++|.++++.+..
T Consensus 158 ~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~~~ 194 (204)
T 2if2_A 158 QMPIEEKVKYADYVIDNSGSIEETYKQVKKVYEELTR 194 (204)
T ss_dssp SCCHHHHGGGCSEECCCSSCHHHHHHHHHHHHHTTCC
T ss_pred CCChhHHHhcCCEEEECCCCHHHHHHHHHHHHHHHhc
Confidence 8776556677899999999999999999999876544
No 6
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.96 E-value=9.5e-28 Score=192.16 Aligned_cols=192 Identities=34% Similarity=0.516 Sum_probs=164.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
++|+|+|++||||||+++.|+++|+.++++|.+.+....+++..+..+.+.+|...+++++.+++..+...+|.++....
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~~~~ 84 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKN 84 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHcCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHHHHH
Confidence 58999999999999999999999999999999999887777777888999999988877778999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhc
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQ 161 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~ 161 (230)
+++.+++|.+...+...+... +..+++++++.+.+..+...+|.+||+++|++++.+|+.+|++.+.+++..++..+
T Consensus 85 ~l~~~~~p~v~~~~~~~~~~~---~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~ 161 (218)
T 1vht_A 85 WLNALLHPLIQQETQHQIQQA---TSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQ 161 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---CSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHhHCHHHHHHHHHHHHhc---CCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 999889998876655444321 34578889887776656667899999999999999999999888889999999888
Q ss_pred CCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 162 MPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 162 ~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
.+.......+|++|+|+++++++.++|.++++.+.
T Consensus 162 ~~~~~~~~~ad~vId~~~~~~~~~~~I~~~l~~~~ 196 (218)
T 1vht_A 162 ATREARLAVADDVIDNNGAPDAIASDVARLHAHYL 196 (218)
T ss_dssp CCHHHHHHHCSEEEECSSCTTSHHHHHHHHHHHHH
T ss_pred CChHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 77666667789999999999999999999887654
No 7
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.95 E-value=1.2e-26 Score=183.13 Aligned_cols=189 Identities=32% Similarity=0.507 Sum_probs=150.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|++|+|+|++||||||+++.|++.|+.++++|.+.+... ++.+ ..+.+.| ..++. ++.+++..+...+|++++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~g~~~id~d~~~~~~~-~~~~--~~i~~~~-~~~~~-~g~i~~~~l~~~~~~~~~~~ 82 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSWGYPVLDLDALAARAR-ENKE--EELKRLF-PEAVV-GGRLDRRALARLVFSDPERL 82 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHTTCCEEEHHHHHHHHH-HHTH--HHHHHHC-GGGEE-TTEECHHHHHHHHTTSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHCCCEEEcccHHHHHhc-CChH--HHHHHHH-HHHHh-CCCcCHHHHHHHHhCCHHHH
Confidence 568999999999999999999966999999999987765 2222 4566666 66666 67789999999999999888
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA 160 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~ 160 (230)
.+++.+.+|.+.. ..+......+.+++++|++.+++..+...+|.++|+++|++++.+|+.+|++.+.+++..++..
T Consensus 83 ~~l~~~~~~~i~~---~~i~~~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~i~~ 159 (203)
T 1uf9_A 83 KALEAVVHPEVRR---LLMEELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARERA 159 (203)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHHTT
T ss_pred HHHHHHhChHHHH---HHHHHhhhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 8888878887751 2222222244678999998887766666679999999999999999999988888888888887
Q ss_pred cCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhC
Q 026952 161 QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 197 (230)
Q Consensus 161 ~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~ 197 (230)
+.+.......+|++|+|+++++++.++|.++++.+..
T Consensus 160 ~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~~~~~~~ 196 (203)
T 1uf9_A 160 QMPEEEKRKRATWVLENTGSLEDLERALKAVLAELTG 196 (203)
T ss_dssp SCCHHHHHHHCSEEECCSSHHHHHHHHHHHHHHSCCC
T ss_pred CCChhHHHHhCCEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 7666555567899999999999999999998876543
No 8
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.84 E-value=1e-19 Score=143.83 Aligned_cols=186 Identities=17% Similarity=0.153 Sum_probs=117.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhc----CC-----chHHHHHHHHhCCcccCCCCccCHHHHHhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLK----KG-----TGGWKKVVAAFGEDILLPNGEVDRSKLGQI 72 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 72 (230)
+|+|+|++||||||+++.|+ .+|++++++|.+.+.... .+ ...+..+...++..+...++..+.-..+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 89999999999999999999 589999999999876531 11 123445555555433222211110000111
Q ss_pred hcC---ChHHHHHH-HhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCC
Q 026952 73 VFS---DSSKRQLL-NGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDR 148 (230)
Q Consensus 73 ~~~---~~~~~~~l-~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~ 148 (230)
++. ........ ....+|.+.+.+....... . +.++++++.+. ..+...+|.+||+++|++++.+|+.+|.+
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~--~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~r~~ 158 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEV--P--PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRARERP 158 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHS--C--SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHTSS
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHh--c--CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHhhcc
Confidence 110 00000000 1235666665554443322 2 46789988766 33445578999999999999999999977
Q ss_pred CCHHHHHHHHHhcCCcc-cc-cccCC-EEEeCCC-CHHHHHHHHHHHHH
Q 026952 149 TSEEDARNRINAQMPLD-IK-RNNAD-IVINNTG-TLDDLNEQVRKVLF 193 (230)
Q Consensus 149 ~~~~~~~~r~~~~~~~~-~~-~~~ad-~iI~n~~-~~~~v~~~i~~~l~ 193 (230)
.+.+++..+++...... .. ...+| ++|||++ +++++.++|.++++
T Consensus 159 ~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 159 QAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp SCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 77778777776421111 11 34577 8999997 99999999988764
No 9
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.81 E-value=2.6e-20 Score=152.19 Aligned_cols=183 Identities=17% Similarity=0.172 Sum_probs=113.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCc----------EEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVP----------VVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKL 69 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~----------~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 69 (230)
|++|+|+|++||||||+|+.|+ .+|+. ++++|++++.+.. + ..-....+...+++.+.++...+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~--~---~~~~~~~g~~~f~~~~~~d~~~l 96 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTS--E---QKAKALKGQFNFDHPDAFDNELI 96 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCH--H---HHHHHHTTCSCTTSGGGBCHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccCh--h---hhhhhccCCCCCCCcchhhHHHH
Confidence 5789999999999999999999 48887 7999999864321 0 00012233333332222222211
Q ss_pred HhhhcCChHHHHHHHhhhhHHHHH------HHHHHHHH-HHhcCCcEEEEEeeeec-cccccccCCeEEEEEcCHHHHHH
Q 026952 70 GQIVFSDSSKRQLLNGLLAPYISL------GIFMEVLK-LWIKGCKVIVLDVPLLF-EAKMDKWTKPIVVVWVDPDTQLQ 141 (230)
Q Consensus 70 ~~~~~~~~~~~~~l~~~~~p~v~~------~~~~~~~~-~~~~~~~~viie~~~~~-e~~~~~~~d~vi~l~~~~~~~~~ 141 (230)
.+.++.+.++.... ........ ....+.+++|+||+.++ +..+...+|.+||+++|++++.+
T Consensus 97 ----------~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~ 166 (252)
T 1uj2_A 97 ----------LKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLS 166 (252)
T ss_dssp ----------HHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHH
T ss_pred ----------HHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHH
Confidence 12222222110000 00000000 00013467899997765 55555668999999999999999
Q ss_pred HHHhhC----CCCHHHHHHHHHhcCC------cccccccCCEEE----eCCCCHHHHHHHHHHHHHHhhCC
Q 026952 142 RLMARD----RTSEEDARNRINAQMP------LDIKRNNADIVI----NNTGTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 142 Rl~~R~----~~~~~~~~~r~~~~~~------~~~~~~~ad~iI----~n~~~~~~v~~~i~~~l~~~~~~ 198 (230)
|+.+|+ +.+.+++..++..+.. ..+....||++| +|+++++++.++|.+++....+.
T Consensus 167 R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~~~~ 237 (252)
T 1uj2_A 167 RRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNGGPSK 237 (252)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHccchhh
Confidence 999886 6788888877765331 124566799998 88779999999999988765544
No 10
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.80 E-value=2.8e-19 Score=139.39 Aligned_cols=164 Identities=16% Similarity=0.116 Sum_probs=107.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|++|+|+|+|||||||+|+.|+ .+|+.++++|++.+.....+.+....+.+.++..... ..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~-----~~------------- 67 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV-----PS------------- 67 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCC-----CH-------------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCC-----CH-------------
Confidence 4689999999999999999999 5799999999988876545555555665555322110 00
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccc---cc----cc--cCCeEEEEEcCHHHHHHHHHhhCC--
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEA---KM----DK--WTKPIVVVWVDPDTQLQRLMARDR-- 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~---~~----~~--~~d~vi~l~~~~~~~~~Rl~~R~~-- 148 (230)
...++.+.. .+. ...+..+++|+...... .+ .. .+|.+||+++|++++.+|+.+|++
T Consensus 68 -----~~~~~~l~~----~i~---~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~ 135 (194)
T 1qf9_A 68 -----IVTVKLLKN----AID---ANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESS 135 (194)
T ss_dssp -----HHHHHHHHH----HHH---TSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTS
T ss_pred -----HHHHHHHHH----HHH---hcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccC
Confidence 001111111 111 11344678885321110 11 11 467899999999999999998853
Q ss_pred ----CCHHHHHHHHHhcC----CcccccccCC--EEEeCCCCHHHHHHHHHHHHHH
Q 026952 149 ----TSEEDARNRINAQM----PLDIKRNNAD--IVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 149 ----~~~~~~~~r~~~~~----~~~~~~~~ad--~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
.+.+.+.+|+..+. +....+..+| ++|||+++++++.++|.++++.
T Consensus 136 ~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 136 GRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp CCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 23677888776543 2223344467 6799999999999999998864
No 11
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.80 E-value=1.1e-18 Score=133.70 Aligned_cols=164 Identities=16% Similarity=0.178 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
++|+|+|+|||||||+|+.|.++|+.++++|++.++.....+ .... ....+...++ .
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L~~~g~~~i~~~~~~~~~~~~~~--------------~~~~---~~~~~~~~~~------~ 58 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEA--------------KPGE---RLMDFAKRLR------E 58 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHHHHHHC-----------------C---CHHHHHHHHH------H
T ss_pred cEEEEECCCCCCHHHHHHHHHHCCCcEEEHhHHHHHHHHhcC--------------CChh---HHHHHHHHHH------h
Confidence 589999999999999999997799999999888776432110 0000 0111111000 0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHH-hcCCcEEEEEeeeeccc---cccc---cCCeEEEEEcCHHHHHHHHHhhCC----CC
Q 026952 82 LLNGLLAPYISLGIFMEVLKLW-IKGCKVIVLDVPLLFEA---KMDK---WTKPIVVVWVDPDTQLQRLMARDR----TS 150 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~-~~~~~~viie~~~~~e~---~~~~---~~d~vi~l~~~~~~~~~Rl~~R~~----~~ 150 (230)
. .-...... ...... ......+|+|+. .... .+.. ..+.+||+++|++++.+|+.+|++ .+
T Consensus 59 ~---~~~~~~~~----~~~~~l~~~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~ 130 (179)
T 3lw7_A 59 I---YGDGVVAR----LCVEELGTSNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKE 130 (179)
T ss_dssp H---HCTTHHHH----HHHHHHCSCCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCC
T ss_pred h---CCHHHHHH----HHHHHHHhcCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcch
Confidence 0 00000111 111111 133456788875 2211 1112 235799999999999999999975 67
Q ss_pred HHHHHHHHHh--cCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 151 EEDARNRINA--QMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 151 ~~~~~~r~~~--~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
.+++..++.. +++.......+|++|+|+++++++.++|.++++.++
T Consensus 131 ~~~~~~r~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 131 ISELIRRDREELKLGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTCSEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhccChHhHHHhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 7888888743 344555667899999999999999999999988654
No 12
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.78 E-value=8.2e-18 Score=132.62 Aligned_cols=166 Identities=16% Similarity=0.185 Sum_probs=103.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcC-CchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKK-GTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSS 78 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (230)
|++|+|+|++||||||+|+.|+ .+|+.++++|.+.+....+ +......+.+.+. +|.+...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~------~g~~~~~----------- 77 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK------EGQIVPQ----------- 77 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH------TTCCCCH-----------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH------cCCcCCH-----------
Confidence 6799999999999999999999 7999999999988875432 2222222222221 1111100
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeee-------eccccccccCCeEEEEEcCHHHHHHHHHhhCC---
Q 026952 79 KRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPL-------LFEAKMDKWTKPIVVVWVDPDTQLQRLMARDR--- 148 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~-------~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~--- 148 (230)
...++.+... +......+.+.+++|+.. .++..+ ..+|.+||+++|++++.+|+.+|++
T Consensus 78 ------~~~~~~l~~~----i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~-~~~~~~i~l~~~~e~~~~Rl~~R~~~~~ 146 (203)
T 1ukz_A 78 ------EITLALLRNA----ISDNVKANKHKFLIDGFPRKMDQAISFERDI-VESKFILFFDCPEDIMLERLLERGKTSG 146 (203)
T ss_dssp ------HHHHHHHHHH----HHHHHHTTCCEEEEETCCCSHHHHHHHHHHT-CCCSEEEEEECCHHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHH----HHhhhccCCCeEEEeCCCCCHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHhccccCC
Confidence 1122222222 222223443456777531 111111 2368999999999999999988752
Q ss_pred ---CCHHHHHHHHHhc----CCcccccccCCE--EEeCCCCHHHHHHHHHHHHHH
Q 026952 149 ---TSEEDARNRINAQ----MPLDIKRNNADI--VINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 149 ---~~~~~~~~r~~~~----~~~~~~~~~ad~--iI~n~~~~~~v~~~i~~~l~~ 194 (230)
.+.+.+.+|+... .+....+..++. +|||+++++++.++|.+++..
T Consensus 147 ~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 147 RSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp CTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 3577777775432 233333344664 479999999999999998865
No 13
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.77 E-value=2.1e-18 Score=137.40 Aligned_cols=165 Identities=18% Similarity=0.148 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|.|+|+|+|||||||+|+.|+ ++|+.++++|++.++....+.+....+.+.++...+.++. .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~-----~------------ 63 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDE-----V------------ 63 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHH-----H------------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHH-----H------------
Confidence 358899999999999999998 7999999999999987777777777776666543321110 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eecc--ccc-------cccCCeEEEEEcCHHHHHHHHHhh----
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLFE--AKM-------DKWTKPIVVVWVDPDTQLQRLMAR---- 146 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~e--~~~-------~~~~d~vi~l~~~~~~~~~Rl~~R---- 146 (230)
....+ ...+.. ...+ ..+++|+. ...+ ..+ ...+|.+|++++|++++.+|+.+|
T Consensus 64 ------~~~~~----~~~l~~-~~~~-~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~ 131 (216)
T 3dl0_A 64 ------TIGIV----KERLGK-DDCE-RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICS 131 (216)
T ss_dssp ------HHHHH----HHHHTS-GGGT-TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEET
T ss_pred ------HHHHH----HHHHhc-cccc-CCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCC
Confidence 00111 111110 0123 33577752 2111 011 123689999999999999999999
Q ss_pred -----------------------------CCCCHHHHHHHHHhcCC----ccccccc--CCEEEeCCCCHHHHHHHHHHH
Q 026952 147 -----------------------------DRTSEEDARNRINAQMP----LDIKRNN--ADIVINNTGTLDDLNEQVRKV 191 (230)
Q Consensus 147 -----------------------------~~~~~~~~~~r~~~~~~----~~~~~~~--ad~iI~n~~~~~~v~~~i~~~ 191 (230)
...+++.+.+|++.+.. ....+.. ..++||++++++++.++|.++
T Consensus 132 ~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~ 211 (216)
T 3dl0_A 132 VCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVL 211 (216)
T ss_dssp TTCCEEETTTBCCSSTTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHH
T ss_pred ccCCccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHH
Confidence 35678889888864432 2222221 236799999999999999998
Q ss_pred HHHh
Q 026952 192 LFEI 195 (230)
Q Consensus 192 l~~~ 195 (230)
+..+
T Consensus 212 l~~~ 215 (216)
T 3dl0_A 212 LGGL 215 (216)
T ss_dssp HGGG
T ss_pred HHhc
Confidence 8643
No 14
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.77 E-value=2.4e-17 Score=131.45 Aligned_cols=181 Identities=17% Similarity=0.176 Sum_probs=112.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHh----hcCCchHHHHHHHH-------h------CCcccCCCCc
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDV----LKKGTGGWKKVVAA-------F------GEDILLPNGE 63 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~----~~~~~~~~~~l~~~-------~------~~~~~~~~~~ 63 (230)
++|+|+|++||||||+++.|+ .+|++++++|.+++.+ .+.+. ...+.+. | |..++. +|.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~-~g~ 80 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVIL-DNE 80 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEE-TTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEe-CCc
Confidence 379999999999999999999 5899999999998864 22221 1122222 2 222221 222
Q ss_pred cCHHHHHhhhcCChHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHH
Q 026952 64 VDRSKLGQIVFSDSSKRQLLNG-LLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQR 142 (230)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~l~~-~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~R 142 (230)
.....+ .++.....++. ..+|.+.+.+...... ...+ +.++++++.+ +..+...+|.+||+++|++++.+|
T Consensus 81 ~~~~~~-----~~~~~~~~~~~~~~~p~v~~~~~~~~~~-~~~~-~~~vi~g~~~-~~~~~~~~~~vi~l~a~~e~~~~R 152 (219)
T 2h92_A 81 DVTDFL-----RNNDVTQHVSYVASKEPVRSFAVKKQKE-LAAE-KGIVMDGRDI-GTVVLPDADLKVYMIASVEERAER 152 (219)
T ss_dssp ECGGGS-----SSSHHHHHHHHHHTSHHHHHHHHHHHHH-HHTT-CCEEEEESSC-CCCCCTTCSEEEEEECCHHHHHHH
T ss_pred cchhhc-----CcHHHHHHHHHhccCHHHHHHHHHHHHH-hccC-CcEEEEcCCc-cceecCCCCEEEEEECCHHHHHHH
Confidence 111111 12222222222 4577776655433222 2233 3468888643 223334568999999999999999
Q ss_pred HHh---hCCC--CHHHHHHHHHhcC------CcccccccCC-EEEeCCC-CHHHHHHHHHHHHH
Q 026952 143 LMA---RDRT--SEEDARNRINAQM------PLDIKRNNAD-IVINNTG-TLDDLNEQVRKVLF 193 (230)
Q Consensus 143 l~~---R~~~--~~~~~~~r~~~~~------~~~~~~~~ad-~iI~n~~-~~~~v~~~i~~~l~ 193 (230)
+.+ +++. +.+++..+++.+. ...+.+..+| ++|||++ +++++.++|.+.++
T Consensus 153 ~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 153 RYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVS 216 (219)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHHHHHHHHHHh
Confidence 753 2344 7788877776432 2224444566 8999986 99999999998775
No 15
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.76 E-value=1.1e-17 Score=130.93 Aligned_cols=168 Identities=18% Similarity=0.198 Sum_probs=105.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|++|+|+|+|||||||+|+.|+ .+|+.++++|.+.+.....+......+.+.+.. ...+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-----g~~~~~~------------ 71 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEK-----GQLVPLE------------ 71 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHT-----TCCCCHH------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHc-----CCcCCHH------------
Confidence 4689999999999999999999 689999999998887654444444444443311 0001110
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeeccc--cc---cccCCeEEEEEcCHHHHHHHHHhhCC-----
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLFEA--KM---DKWTKPIVVVWVDPDTQLQRLMARDR----- 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~e~--~~---~~~~d~vi~l~~~~~~~~~Rl~~R~~----- 148 (230)
..++.+. ..+...... +..+|+|+ +...+. .+ ...+|.+||+++|++++.+|+.+|+.
T Consensus 72 ------~~~~~~~----~~i~~~~~~-~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~ 140 (196)
T 2c95_A 72 ------TVLDMLR----DAMVAKVNT-SKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRV 140 (196)
T ss_dssp ------HHHHHHH----HHHHHHTTT-CSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCG
T ss_pred ------HHHHHHH----HHHHhcccc-CCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCC
Confidence 1111111 112222223 34578886 222110 00 13468999999999999999998852
Q ss_pred -CCHHHHHHHHHhcCCc-c---cccccCC--EEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 149 -TSEEDARNRINAQMPL-D---IKRNNAD--IVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 149 -~~~~~~~~r~~~~~~~-~---~~~~~ad--~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
.+.+.+..|+...... . ..+..++ ++||++++++++.++|.+.+...+
T Consensus 141 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~~ 195 (196)
T 2c95_A 141 DDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDALL 195 (196)
T ss_dssp GGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 3566777776544321 1 1223344 368999999999999999987654
No 16
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.76 E-value=8e-18 Score=131.93 Aligned_cols=166 Identities=16% Similarity=0.166 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|+|+|+|||||||+|+.|+ .+|+.++++|++.+.....+.+....+.+.+... ..+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g-----~~~~~~------------- 74 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERG-----DLVPSG------------- 74 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTT-----CCCCHH-------------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcC-----CcCCHH-------------
Confidence 589999999999999999999 5799999999998776544444455554444211 011111
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeec-cc--cccc---cCCeEEEEEcCHHHHHHHHHhhCCC-----
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLF-EA--KMDK---WTKPIVVVWVDPDTQLQRLMARDRT----- 149 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~-e~--~~~~---~~d~vi~l~~~~~~~~~Rl~~R~~~----- 149 (230)
..++.+. ..+.... ..+..+|+|+.... +. .+.. .+|.+||+++|++++.+|+.+|+..
T Consensus 75 -----~~~~~~~----~~i~~~~-~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~ 144 (199)
T 2bwj_A 75 -----IVLELLK----EAMVASL-GDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVD 144 (199)
T ss_dssp -----HHHHHHH----HHHHHHT-TSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHH
T ss_pred -----HHHHHHH----HHHhccc-ccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCC
Confidence 1111111 1111111 23456788853221 11 1211 4689999999999999999998642
Q ss_pred -CHHHHHHHHHhcCCc-c---cccc-cCC-EEEeCCCCHHHHHHHHHHHHHHh
Q 026952 150 -SEEDARNRINAQMPL-D---IKRN-NAD-IVINNTGTLDDLNEQVRKVLFEI 195 (230)
Q Consensus 150 -~~~~~~~r~~~~~~~-~---~~~~-~ad-~iI~n~~~~~~v~~~i~~~l~~~ 195 (230)
+.+.+.+|+..+... . +.+. .++ ++||++++++++.++|.+.++..
T Consensus 145 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 145 DTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 234566665443321 1 1222 234 67899999999999999988754
No 17
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.76 E-value=2.5e-18 Score=136.85 Aligned_cols=164 Identities=18% Similarity=0.159 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|+|+|+|+|||||||+|+.|+ ++|+.++++|++.++....+.+....+.+.++...+.++ .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~-----~------------- 62 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPD-----E------------- 62 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCH-----H-------------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCH-----H-------------
Confidence 368899999999999999998 689999999999998777666666666555543222111 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eeccc--cc-------cccCCeEEEEEcCHHHHHHHHHhh----
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLFEA--KM-------DKWTKPIVVVWVDPDTQLQRLMAR---- 146 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~e~--~~-------~~~~d~vi~l~~~~~~~~~Rl~~R---- 146 (230)
.....+ ...+... ..+ ..+++|+. ...+. .+ ...+|.+|++++|++++.+|+.+|
T Consensus 63 -----~~~~~~----~~~l~~~-~~~-~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~ 131 (216)
T 3fb4_A 63 -----VTIGIV----HERLSKD-DCQ-KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICK 131 (216)
T ss_dssp -----HHHHHH----HHHHTSG-GGT-TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEET
T ss_pred -----HHHHHH----HHHHhcc-cCC-CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCC
Confidence 011111 1111100 123 33577752 21110 11 113689999999999999999998
Q ss_pred -----------------------------CCCCHHHHHHHHHhcCC----ccccccc--CCEEEeCCCCHHHHHHHHHHH
Q 026952 147 -----------------------------DRTSEEDARNRINAQMP----LDIKRNN--ADIVINNTGTLDDLNEQVRKV 191 (230)
Q Consensus 147 -----------------------------~~~~~~~~~~r~~~~~~----~~~~~~~--ad~iI~n~~~~~~v~~~i~~~ 191 (230)
...+++.+.+|++.+.. ....+.. ..++||++++++++.++|.+.
T Consensus 132 ~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~ 211 (216)
T 3fb4_A 132 TCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDL 211 (216)
T ss_dssp TTCCEEETTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHH
T ss_pred ccCCccccccCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHH
Confidence 34567888888765432 1222222 235799999999999999998
Q ss_pred HHH
Q 026952 192 LFE 194 (230)
Q Consensus 192 l~~ 194 (230)
+..
T Consensus 212 l~~ 214 (216)
T 3fb4_A 212 LGG 214 (216)
T ss_dssp HHT
T ss_pred HHh
Confidence 864
No 18
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.75 E-value=2.7e-17 Score=134.40 Aligned_cols=192 Identities=12% Similarity=0.111 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhh----cC-----CchHHHHHHHHhCCcccCCCCc----cCHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVL----KK-----GTGGWKKVVAAFGEDILLPNGE----VDRS 67 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~----~~-----~~~~~~~l~~~~~~~~~~~~~~----~~~~ 67 (230)
.+|+|+|++||||||+++.|+ ++|+.++++|.+++.+. .. +......+...++..+....+. +...
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 107 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILEGE 107 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEETTE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEECCe
Confidence 589999999999999999999 68999999999986543 11 1112333333333222110000 0000
Q ss_pred HHHhhhcCChHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHh-
Q 026952 68 KLGQIVFSDSSKRQLLNG-LLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMA- 145 (230)
Q Consensus 68 ~l~~~~~~~~~~~~~l~~-~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~- 145 (230)
.+...+. ..+....... ..+|.+.+.+....... ..+ +.+++++..+....+ ...+++||++||++++.+|+.+
T Consensus 108 ~v~~~i~-~~~v~~~~s~~~~~~~vr~~l~~~~~~~-a~~-~~~V~~gr~~~~~v~-~~~~~~ifl~A~~e~r~~R~~~~ 183 (252)
T 4e22_A 108 DVSNEIR-TETVGNTASQAAAFPRVREALLRRQRAF-REA-PGLIADGRDMGTIVF-PDAPVKIFLDASSQERAHRRMLQ 183 (252)
T ss_dssp ECTTGGG-SHHHHHHHHHHTTSHHHHHHHHHHHHTT-CCS-SCEEEEESSCCCCCS-TTCSEEEEEECCHHHHHHHHHHH
T ss_pred ehhHHHH-HHHHHHHHHHhcccHHHHHHHHHHHHHH-hhC-CCEEEEeceeceeec-CCCCEEEEEECCHHHHHHHHHHH
Confidence 0000000 0111111111 13555555444333322 223 347888765443322 2358999999999999999875
Q ss_pred ----hCCCCHHHHHHHHHhcCC------cccccccCC-EEEeCCC-CHHHHHHHHHHHHHHhhC
Q 026952 146 ----RDRTSEEDARNRINAQMP------LDIKRNNAD-IVINNTG-TLDDLNEQVRKVLFEIKR 197 (230)
Q Consensus 146 ----R~~~~~~~~~~r~~~~~~------~~~~~~~ad-~iI~n~~-~~~~v~~~i~~~l~~~~~ 197 (230)
+.+.+.+++..++..+.. ..+.+..+| ++|||++ +++++.++|.++++....
T Consensus 184 l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~~~ 247 (252)
T 4e22_A 184 LQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQRILA 247 (252)
T ss_dssp HHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHHCC
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHHHHHHHHHhh
Confidence 556788887776643322 334556667 7899988 899999999999876543
No 19
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.75 E-value=4.7e-17 Score=130.23 Aligned_cols=190 Identities=10% Similarity=0.080 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhc----CCc-----hHHHHHHHHhCCcccCCCC----ccCHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLK----KGT-----GGWKKVVAAFGEDILLPNG----EVDRS 67 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~----~~~-----~~~~~l~~~~~~~~~~~~~----~~~~~ 67 (230)
++|+|+|++||||||+++.|+ .+|++++++|.+++.... .+. .....+.+.++..+...++ .+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGE 85 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECCe
Confidence 479999999999999999999 589999999999885421 111 1223344444332211100 00000
Q ss_pred HHHhhhcCChHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHH--
Q 026952 68 KLGQIVFSDSSKRQLLNG-LLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLM-- 144 (230)
Q Consensus 68 ~l~~~~~~~~~~~~~l~~-~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~-- 144 (230)
.+... +.+.+....... ..+|.+...+...... ....+.+++|++.+.+. +...+|.+||+++|++++.+|+.
T Consensus 86 ~v~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~vldg~~~~~~-~~~~~d~~i~l~~~~e~~~~R~~~~ 161 (227)
T 1cke_A 86 DVSGE-IRTQEVANAASQVAAFPRVREALLRRQRA--FRELPGLIADGRDMGTV-VFPDAPVKIFLDASSEERAHRRMLQ 161 (227)
T ss_dssp ECHHH-HTSHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTCEEEEESSCCCC-CCTTCSEEEEEECCHHHHHHHHHHH
T ss_pred eCchh-hCCHHHHHHHHHhcCCHHHHHHHHHHHHH--HHhCCCEEEECCCccce-EecCCCEEEEEeCCHHHHHHHHHHH
Confidence 00011 111111111111 1345554433322111 12345689998854442 33457999999999999999954
Q ss_pred --hhCCC--CHHHHHHHHHh----cCC--ccccccc-CCEEEeCC-CCHHHHHHHHHHHHHHhh
Q 026952 145 --ARDRT--SEEDARNRINA----QMP--LDIKRNN-ADIVINNT-GTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 145 --~R~~~--~~~~~~~r~~~----~~~--~~~~~~~-ad~iI~n~-~~~~~v~~~i~~~l~~~~ 196 (230)
+| +. +.++...++.. +.. .++.+.. ++++|||+ .+++++.++|.++++..+
T Consensus 162 l~~r-g~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~~ 224 (227)
T 1cke_A 162 LQVK-GFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQKL 224 (227)
T ss_dssp HHHH-TCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhC-CccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHHHHHHHhh
Confidence 34 43 56666555543 222 1333333 34899999 699999999999887653
No 20
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.74 E-value=7.1e-17 Score=130.47 Aligned_cols=183 Identities=16% Similarity=0.206 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhh----cCCch-----HHHHHHHH----h------CCcccCCC
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVL----KKGTG-----GWKKVVAA----F------GEDILLPN 61 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~----~~~~~-----~~~~l~~~----~------~~~~~~~~ 61 (230)
.+|+|+|++||||||+++.|+ .+|+.++++|.+.+... ..+.+ .+..+... | +..++. +
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~-~ 95 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVFV-G 95 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEEE-T
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEeE-C
Confidence 589999999999999999999 58999999999987642 12221 12222221 1 112221 2
Q ss_pred Cc-cCHHHHHh-hhcCChHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHH
Q 026952 62 GE-VDRSKLGQ-IVFSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQ 139 (230)
Q Consensus 62 ~~-~~~~~l~~-~~~~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~ 139 (230)
|. +.+ .+.. .++. .......+|.+...+....... ..+ +.+++++..... .+...+|.+||+++|++++
T Consensus 96 G~~~~r-~l~~~~v~~-----~~~~~~~~~~vr~~~~~~~~~~-~~~-~~~v~~g~~~~~-~~l~~~d~vi~L~a~~e~~ 166 (236)
T 1q3t_A 96 DVDITH-PIRENEVTN-----HVSAIAAIPEVREKLVSLQQEI-AQQ-GGIVMDGRDIGT-VVLPQAELKIFLVASVDER 166 (236)
T ss_dssp TEEESS-SSCSHHHHH-----HHHHHHTSHHHHHHHHHHHHHH-HTT-SCEEEECSSCSS-SSGGGCSEEEEEECCHHHH
T ss_pred CcCchh-hhccHHHHH-----HHHHHccCHHHHHHHHHHHHHh-ccc-CCEEEECCcchh-hhccCCCEEEEEECCHHHH
Confidence 22 222 1111 1111 1112345677766554443322 233 356778764322 2223468999999999999
Q ss_pred HHHH----HhhC-CCCHHHHHHHHHh-cC-----CcccccccCC-EEEeCCC-CHHHHHHHHHHHHHH
Q 026952 140 LQRL----MARD-RTSEEDARNRINA-QM-----PLDIKRNNAD-IVINNTG-TLDDLNEQVRKVLFE 194 (230)
Q Consensus 140 ~~Rl----~~R~-~~~~~~~~~r~~~-~~-----~~~~~~~~ad-~iI~n~~-~~~~v~~~i~~~l~~ 194 (230)
.+|+ .+|+ +.+.+++..++++ +. ...+.+..+| ++|||++ +++++.++|.++++.
T Consensus 167 ~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I~~~l~~ 234 (236)
T 1q3t_A 167 AERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAEAEK 234 (236)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 9997 4565 4577777766654 21 1233444456 8999996 999999999998764
No 21
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.73 E-value=2.3e-17 Score=131.64 Aligned_cols=166 Identities=19% Similarity=0.226 Sum_probs=107.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
+++|+|.|||||||||+|+.|+ ++|+++|+++++.|.....+++....+.+.+...-+.++ .
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpd------e----------- 91 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPL------E----------- 91 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCH------H-----------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCH------H-----------
Confidence 3689999999999999999999 799999999999998777777666666554422111111 0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeec-c-ccc---cccCCeEEEEEcCHHHHHHHHHhhCC-----
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLF-E-AKM---DKWTKPIVVVWVDPDTQLQRLMARDR----- 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~-e-~~~---~~~~d~vi~l~~~~~~~~~Rl~~R~~----- 148 (230)
+ +...+.+.+.+.. .....+++|| |-.. + ..+ ....+.++++++|.+++.+|+..|..
T Consensus 92 ------~----~~~lv~~~l~~~~-~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~ 160 (217)
T 3umf_A 92 ------V----VLALLKEAMIKLV-DKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRV 160 (217)
T ss_dssp ------H----HHHHHHHHHHHHT-TTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------C
T ss_pred ------H----HHHHHHHHHhhcc-ccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCC
Confidence 1 1111222222221 1223467886 3211 1 111 12358899999999999999988752
Q ss_pred -CCHHHHHHHHHhcC----CcccccccCC--EEEeCCCCHHHHHHHHHHHHHH
Q 026952 149 -TSEEDARNRINAQM----PLDIKRNNAD--IVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 149 -~~~~~~~~r~~~~~----~~~~~~~~ad--~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
++++.+.+|++.+. ++..++.... +.||++++++++.++|.+.++.
T Consensus 161 DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 161 DDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 34667888876432 2333343333 3589999999999999998874
No 22
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.73 E-value=3.8e-17 Score=132.77 Aligned_cols=164 Identities=18% Similarity=0.135 Sum_probs=109.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
+++|+|+|+|||||||+|+.|+ ++|+.++++|++.+.....+.+....+.+.++...+.++. .
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~-----~----------- 92 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQ-----M----------- 92 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHH-----H-----------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHH-----H-----------
Confidence 4689999999999999999999 6899999999999987777777777776666543332211 0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eecc-c-cc-------cccCCeEEEEEcCHHHHHHHHHhhC--
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLFE-A-KM-------DKWTKPIVVVWVDPDTQLQRLMARD-- 147 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~e-~-~~-------~~~~d~vi~l~~~~~~~~~Rl~~R~-- 147 (230)
....+. ..+... ..+ ..+++|+. .... . .+ ...+|.++++++|++++.+|+.+|.
T Consensus 93 -------~~~~~~----~~l~~~-~~~-~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~ 159 (243)
T 3tlx_A 93 -------VLSLVD----EKLKTP-QCK-KGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIH 159 (243)
T ss_dssp -------HHHHHH----HHTTSG-GGS-SEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEE
T ss_pred -------HHHHHH----HHHhcc-ccc-CCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCC
Confidence 000011 111100 112 34677752 1111 0 11 1236899999999999999999874
Q ss_pred -------------------------------CCCHHHHHHHHHhcC----CcccccccCC--EEEeCCCCHHHHHHHHHH
Q 026952 148 -------------------------------RTSEEDARNRINAQM----PLDIKRNNAD--IVINNTGTLDDLNEQVRK 190 (230)
Q Consensus 148 -------------------------------~~~~~~~~~r~~~~~----~~~~~~~~ad--~iI~n~~~~~~v~~~i~~ 190 (230)
..+++.+.+|++.+. +...++...+ +.||++++++++.++|.+
T Consensus 160 ~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~ 239 (243)
T 3tlx_A 160 KPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQ 239 (243)
T ss_dssp TTTTEEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHH
T ss_pred cccCcccccccCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHH
Confidence 256788888887542 2333443333 458999999999999998
Q ss_pred HHH
Q 026952 191 VLF 193 (230)
Q Consensus 191 ~l~ 193 (230)
++.
T Consensus 240 ~l~ 242 (243)
T 3tlx_A 240 HID 242 (243)
T ss_dssp HHH
T ss_pred HHc
Confidence 764
No 23
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.73 E-value=2.4e-17 Score=126.24 Aligned_cols=152 Identities=20% Similarity=0.288 Sum_probs=89.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|.+|+|+|++||||||+|+.|+ ++|++++++|.+.++... .....+.+.+|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g---~~~~~~~~~~g~~~~--------------------- 62 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG---LSVREIFEELGEDNF--------------------- 62 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT---SCHHHHHHHTCHHHH---------------------
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC---CCHHHHHHHhCHHHH---------------------
Confidence 7899999999999999999999 589999999998876431 112233332221110
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcE-EEEEee-eeccccccccCCeEEEEEcCHHHHHHHHHhhC-----CCC-H
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKV-IVLDVP-LLFEAKMDKWTKPIVVVWVDPDTQLQRLMARD-----RTS-E 151 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~-viie~~-~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~-----~~~-~ 151 (230)
.. ....+...+ ....+. |+..+. ......+ ..+|.+||+++|++++.+|+.+|. ..+ .
T Consensus 63 -~~--------~~~~~l~~~----~~~~~~~Vi~~g~g~~~~~~l-~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~ 128 (168)
T 1zuh_A 63 -RM--------FEKNLIDEL----KTLKTPHVISTGGGIVMHENL-KGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNL 128 (168)
T ss_dssp -HH--------HHHHHHHHH----HTCSSCCEEECCGGGGGCGGG-TTSEEEEEEECCHHHHHHHHCC--------CCTT
T ss_pred -HH--------HHHHHHHHH----HhcCCCEEEECCCCEechhHH-hcCCEEEEEECCHHHHHHHHhccCCCCCCCccCH
Confidence 00 000000111 122333 343221 1111112 336789999999999999998772 222 3
Q ss_pred HHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHH
Q 026952 152 EDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVL 192 (230)
Q Consensus 152 ~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l 192 (230)
+.+...+....+. +...+|++|||+++++++.++|.+.+
T Consensus 129 ~~~~~~~~~r~~~--~~~~a~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 129 TQAKELFEKRQAL--YEKNASFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp HHHHHHHHHHHHH--HHHTCSEEEEGGGCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH--HHHHCCEEEECCCCHHHHHHHHHHHh
Confidence 4455554433221 22348999999999999999887654
No 24
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.73 E-value=7.6e-17 Score=125.72 Aligned_cols=168 Identities=12% Similarity=0.111 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCch-HHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTG-GWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
++|+|+|+|||||||+|+.|+ .+|+.++++|++.+....+++. ....+.+.+. +|.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~------------ 65 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK------EGKIVPV------------ 65 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH------TTCCCCH------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH------CCCcCCH------------
Confidence 589999999999999999999 5899999999998765433222 1222222111 1111100
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccc---ccc------ccCCeEEEEEcCHHHHHHHHHhhCC--
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEA---KMD------KWTKPIVVVWVDPDTQLQRLMARDR-- 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~---~~~------~~~d~vi~l~~~~~~~~~Rl~~R~~-- 148 (230)
...++.+...+...+. . ......+|+|+...... .+. ..+|.+||+++|++++.+|+.+|+.
T Consensus 66 -----~~~~~~l~~~~~~~~~-~-~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~ 138 (196)
T 1tev_A 66 -----EITISLLKREMDQTMA-A-NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSS 138 (196)
T ss_dssp -----HHHHHHHHHHHHHHHH-H-CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTS
T ss_pred -----HHHHHHHHHHHHhhhc-c-ccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccC
Confidence 0111222221111111 1 12245678885432211 111 1357899999999999999988742
Q ss_pred ----CCHHHHHHHHHhcCCccc-----ccccCCE-EEeCCCCHHHHHHHHHHHHHH
Q 026952 149 ----TSEEDARNRINAQMPLDI-----KRNNADI-VINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 149 ----~~~~~~~~r~~~~~~~~~-----~~~~ad~-iI~n~~~~~~v~~~i~~~l~~ 194 (230)
.+.+.+.++++.+..... +...+++ +||++++++++.++|.+.+..
T Consensus 139 ~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 139 GRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp SCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 246666667655443211 2334675 899999999999999998864
No 25
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.71 E-value=7.2e-17 Score=125.84 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-C---CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCCh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-N---DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS 77 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~---g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (230)
++|+|+|++||||||+++.|++ + |+.++++|... +......+.+.+. +|.+++.... +|.+.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~------~~~~~~~i~~~~~------~g~~~~~~~~--~~~~~ 66 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPG------GTKVGEVLREILL------TEELDERTEL--LLFEA 66 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSC------SSHHHHHHHHHHH------HSCCCHHHHH--HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC------CCchHHHHHHHHc------CCCCCHHHHH--HHHHH
Confidence 4799999999999999999994 3 99999987431 1222233333332 1234444322 22223
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-----------------eecccc-c-c--ccCCeEEEEEcCH
Q 026952 78 SKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-----------------LLFEAK-M-D--KWTKPIVVVWVDP 136 (230)
Q Consensus 78 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-----------------~~~e~~-~-~--~~~d~vi~l~~~~ 136 (230)
+..++++..++|.+. .+..++++.. .+.+.. + . ..+|.+||+++|+
T Consensus 67 ~~~~~l~~~i~~~l~-------------~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~ 133 (195)
T 2pbr_A 67 SRSKLIEEKIIPDLK-------------RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPV 133 (195)
T ss_dssp HHHHHHHHTHHHHHH-------------TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCH
T ss_pred HHHHHHHHHHHHHHh-------------CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCH
Confidence 334444444444332 2345566621 000000 0 0 1478999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhcC-CcccccccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 137 DTQLQRLMARDRTSEEDARNRINAQM-PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 137 ~~~~~Rl~~R~~~~~~~~~~r~~~~~-~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
+++.+|+.+|++.+.+++..++.... .....+ ...++|||+++++++.++|.+++...+
T Consensus 134 e~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Id~~~~~~~~~~~i~~~l~~~l 193 (195)
T 2pbr_A 134 DIALRRLKEKNRFENKEFLEKVRKGFLELAKEE-ENVVVIDASGEEEEVFKEILRALSGVL 193 (195)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHS-TTEEEEETTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhccCccchHHHHHHHHHHHHHHHhhC-CCEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 99999999876655455555553221 111111 234889999999999999999887543
No 26
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.71 E-value=1.2e-16 Score=125.84 Aligned_cols=162 Identities=18% Similarity=0.165 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|+|+|+|||||||+|+.|+ .+|+.++++|++.++....+......+.+.+.... .+....
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~-----~~~~~~------------ 83 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGD-----LVPSDL------------ 83 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTC-----CCCHHH------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCC-----cccHHH------------
Confidence 589999999999999999999 58999999999888754444444444444332110 001100
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeecc------ccc---cccCCeEEEEEcCHHHHHHHHHhhCC--
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLFE------AKM---DKWTKPIVVVWVDPDTQLQRLMARDR-- 148 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~e------~~~---~~~~d~vi~l~~~~~~~~~Rl~~R~~-- 148 (230)
..+.+.+ .+.. ...+. .+|+|+ +.... ..+ ...+|.+|++++|++++.+|+.+|++
T Consensus 84 ------~~~~~~~----~~~~-~~~~~-~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~ 151 (201)
T 2cdn_A 84 ------TNELVDD----RLNN-PDAAN-GFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRAD 151 (201)
T ss_dssp ------HHHHHHH----HTTS-GGGTT-CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTT
T ss_pred ------HHHHHHH----HHhc-ccCCC-eEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCC
Confidence 0011110 1100 11233 367885 22110 101 12368899999999999999999853
Q ss_pred CCHHHHHHHHHhcC----CcccccccCCEEEeCCCCHHHHHHHHHHHH
Q 026952 149 TSEEDARNRINAQM----PLDIKRNNADIVINNTGTLDDLNEQVRKVL 192 (230)
Q Consensus 149 ~~~~~~~~r~~~~~----~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l 192 (230)
.+.+.+.+|++.+. +....+..++++|||+++++++.++|.+.+
T Consensus 152 ~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~~~eev~~~I~~~l 199 (201)
T 2cdn_A 152 DTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRAL 199 (201)
T ss_dssp CSHHHHHHHHHHHHHHTTTHHHHTTTTEEEEECCSCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHH
Confidence 45777777765433 222333456788999999999999998765
No 27
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.71 E-value=9.1e-16 Score=123.57 Aligned_cols=192 Identities=13% Similarity=0.121 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhh----cCC-----chHHHHHHHHhCCcccCCCCc----cCHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVL----KKG-----TGGWKKVVAAFGEDILLPNGE----VDRS 67 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~~~----~~~~ 67 (230)
++|+|+|++||||||+++.|+ ++|+.+++.|.+++.+. ..+ ......+.+.+...+...++. ++-.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~ 89 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGE 89 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCe
Confidence 479999999999999999999 68999999999987743 111 111223333322211100000 0000
Q ss_pred HHHhhhcCChHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHh-
Q 026952 68 KLGQIVFSDSSKRQLLNGL-LAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMA- 145 (230)
Q Consensus 68 ~l~~~~~~~~~~~~~l~~~-~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~- 145 (230)
.+...+ -.++-......+ ..|.+.+.+.+......... +.+|++|+.+...-+. ..++.||+++|++++.+|+.+
T Consensus 90 ~v~~~i-r~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~-~~~V~~GRd~gt~V~p-da~lkifl~A~~e~Ra~Rr~~~ 166 (233)
T 3r20_A 90 DVSSEI-RGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEG-GRVVVEGRDIGTVVLP-DADVKIFLTASAEERARRRNAQ 166 (233)
T ss_dssp ECTTGG-GSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSS-SCEEEEESSCCCCCCT-TCSEEEEEECCHHHHHHHHHHH
T ss_pred ehhhhh-cchHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-CcEEEecccceeEEcC-CCCEEEEEECCHHHHHHHHHHH
Confidence 000000 001111111111 35666666655555443331 3478888754433232 257899999999999999875
Q ss_pred ----hCCCCHHHHHHHHHhc------CCcccccccCC-EEEeCCC-CHHHHHHHHHHHHHHhh
Q 026952 146 ----RDRTSEEDARNRINAQ------MPLDIKRNNAD-IVINNTG-TLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 146 ----R~~~~~~~~~~r~~~~------~~~~~~~~~ad-~iI~n~~-~~~~v~~~i~~~l~~~~ 196 (230)
+.+.+.+++...+... ....+.....| ++||++. +++++.+.|.++++...
T Consensus 167 l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~i~~~~ 229 (233)
T 3r20_A 167 NVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLDLVTAQA 229 (233)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHHHHC----
T ss_pred HHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 3456777765554321 12334444444 8999988 99999999998876543
No 28
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.71 E-value=1.1e-17 Score=132.39 Aligned_cols=174 Identities=16% Similarity=0.139 Sum_probs=99.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh-C-CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKA-N-DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSS 78 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~-~-g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (230)
|.+|+|+|++||||||+++.|+. + ++.+++.|.+++....... ....++. .+..+.+++..+...+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~l~~~i----- 88 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIET-----DKNGFLQ--YDVLEALNMEKMMSAI----- 88 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCB-----CTTSCBC--CSSGGGBCHHHHHHHH-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhc-----cccCCCh--hHHHHHhHHHHHHHHH-----
Confidence 46899999999999999999995 5 8999999988653211000 0000000 0011123333332221
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecc-ccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHH
Q 026952 79 KRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFE-AKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNR 157 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e-~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r 157 (230)
..+++...+|.+...+.. ..+.+++++|++.+++ ..+...+|.++|+++|++++.+|+.+|. .+.+++..+
T Consensus 89 -~~~l~~~~~~~~~~~~~~------~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~-~~~e~~~~~ 160 (207)
T 2qt1_A 89 -SCWMESARHSVVSTDQES------AEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRV-YQPPDSPGY 160 (207)
T ss_dssp -HHHHHHHTTSSCCC-----------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSC-CSSCCCTTH
T ss_pred -HHHHhCCCCCCcCCCeee------cCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcC-CCccchHHH
Confidence 111222222211111100 1245688999987775 3456678999999999999999998884 222221112
Q ss_pred HH-hcCC----c-ccccccCCE--EEeCCCCHHHHHHHHHHHHHH
Q 026952 158 IN-AQMP----L-DIKRNNADI--VINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 158 ~~-~~~~----~-~~~~~~ad~--iI~n~~~~~~v~~~i~~~l~~ 194 (230)
+. .+++ . +.....++. +|||+++++++.++|.+.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 161 FDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp HHHTHHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 21 1111 1 122334564 489999999999999988753
No 29
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.7e-16 Score=124.92 Aligned_cols=159 Identities=21% Similarity=0.172 Sum_probs=96.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|++|+|+|+|||||||+++.|+ .+|+.+++.|.+........ ...+.+..+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~---i~~~~~~~~~~~---------------------- 79 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKT---VGELFTERGEAG---------------------- 79 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSC---HHHHHHHHHHHH----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCc---HHHHHHhcChHH----------------------
Confidence 5689999999999999999999 68999999998865432111 111111111000
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee--eeccccc--cccCCeEEEEEcCHHHHHHHHH-hhC------C
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP--LLFEAKM--DKWTKPIVVVWVDPDTQLQRLM-ARD------R 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~--~~~e~~~--~~~~d~vi~l~~~~~~~~~Rl~-~R~------~ 148 (230)
...+...+........++++..+. ....... ....+.+||+++|++++.+|+. .|. +
T Consensus 80 ------------~~~~e~~~l~~l~~~~~~vi~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~ 147 (199)
T 3vaa_A 80 ------------FRELERNMLHEVAEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRPILQG 147 (199)
T ss_dssp ------------HHHHHHHHHHHHTTCSSEEEECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCGGGTT
T ss_pred ------------HHHHHHHHHHHHhhcCCcEEECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCCCCCCcCC
Confidence 000111111111234444444332 2222211 1125789999999999999998 342 2
Q ss_pred CCHHHHHHHHHhcCC-cccccccCCEEEeCCC-CHHHHHHHHHHHHHHhh
Q 026952 149 TSEEDARNRINAQMP-LDIKRNNADIVINNTG-TLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 149 ~~~~~~~~r~~~~~~-~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~~~ 196 (230)
.+.+++..++...+. ..+.+..+|++|||++ +++++.++|.+.++.++
T Consensus 148 ~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 148 KEDDELMDFIIQALEKRAPFYTQAQYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTSSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHHHHHhhCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 345555555544332 3344455999999988 89999999999988765
No 30
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.70 E-value=1.4e-16 Score=126.27 Aligned_cols=160 Identities=20% Similarity=0.225 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|+|+|.|||||||||+|+.|+ ++|+++||++++.|+....+++....+.+.....-+.++ .
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd------~------------ 62 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPD------D------------ 62 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCH------H------------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCH------H------------
Confidence 467889999999999999999 799999999999998776666666555544322111111 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeec-cc-c-------ccccCCeEEEEEcCHHHHHHHHHhhC---
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLF-EA-K-------MDKWTKPIVVVWVDPDTQLQRLMARD--- 147 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~-e~-~-------~~~~~d~vi~l~~~~~~~~~Rl~~R~--- 147 (230)
++ ...+.+. ..+.. .+++|| |-.. +. . .....|.++++++|.+++.+|+..|.
T Consensus 63 -----iv----~~lv~~~----l~~~~-~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~ 128 (206)
T 3sr0_A 63 -----LI----IALIEEV----FPKHG-NVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINP 128 (206)
T ss_dssp -----HH----HHHHHHH----CCSSS-CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECT
T ss_pred -----HH----HHHHHHh----hccCC-ceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCcccc
Confidence 01 1111111 11222 367885 3211 11 0 11236889999999999999999873
Q ss_pred -----------------------CCCHHHHHHHHHhcC----CcccccccCC--EEEeCCCCHHHHHHHHHHHHH
Q 026952 148 -----------------------RTSEEDARNRINAQM----PLDIKRNNAD--IVINNTGTLDDLNEQVRKVLF 193 (230)
Q Consensus 148 -----------------------~~~~~~~~~r~~~~~----~~~~~~~~ad--~iI~n~~~~~~v~~~i~~~l~ 193 (230)
..+++.+.+|++.+. +...++.... ..||++++++++.++|.+.+.
T Consensus 129 ~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 203 (206)
T 3sr0_A 129 ETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203 (206)
T ss_dssp TTCCEEETTTBCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred CCCceeeeeccCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 245788888886442 3333343333 358999999999999999875
No 31
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.70 E-value=2.6e-16 Score=120.38 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=92.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCc-cCHHHHHhhhcCChH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGE-VDRSKLGQIVFSDSS 78 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 78 (230)
|++|+|+|+|||||||+++.|+ ++|+.+++.|.+...... ........+.+. ..... .++......+|....
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~--~~~~~~~~~~l~----~~~~vi~dr~~~~~~v~~~~~ 74 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG--NEKLFEHFNKLA----DEDNVIIDRFVYSNLVYAKKF 74 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC--HHHHHHHHHHHT----TCCSEEEESCHHHHHHHTTTB
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH--HHHHHHHHHHHH----hCCCeEEeeeecchHHHHHHH
Confidence 8899999999999999999999 679999999988654331 000101111111 11111 111111111111000
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCC-CHHHHHHH
Q 026952 79 KRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRT-SEEDARNR 157 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~-~~~~~~~r 157 (230)
. .. ....+.... ..+. .....|.+||+++|++++.+|+.+|.+. ...+...+
T Consensus 75 ~--~~-~~~~~~~~~-----------------------~l~~-~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~ 127 (173)
T 3kb2_A 75 K--DY-SILTERQLR-----------------------FIED-KIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDS 127 (173)
T ss_dssp T--TC-CCCCHHHHH-----------------------HHHH-HHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHH
T ss_pred H--Hh-hHhhHHHHH-----------------------HHhc-cCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHH
Confidence 0 00 000000000 0000 0012478899999999999999987532 11223333
Q ss_pred HHh-cCCcccccccCCEEEeCCC-CHHHHHHHHHHHHHHhhCCCc
Q 026952 158 INA-QMPLDIKRNNADIVINNTG-TLDDLNEQVRKVLFEIKRPLN 200 (230)
Q Consensus 158 ~~~-~~~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~~~~~~~ 200 (230)
+.. ..+..+.+..++++||+++ +++++.++|.+.++...++.|
T Consensus 128 ~~~~~~~~~~~~~~~~~~id~~~~~~~ev~~~I~~~~~~~~~~~~ 172 (173)
T 3kb2_A 128 ILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELEHHHHH 172 (173)
T ss_dssp HHHHHHHHHHTCSSCEEEEETTTSCHHHHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHhCCCcccC
Confidence 222 2223333445788999986 999999999999998777654
No 32
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.70 E-value=8.2e-17 Score=124.97 Aligned_cols=157 Identities=20% Similarity=0.185 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|+|+|+|||||||+++.|+ .+|+.++++|++.+.....+.+....+.+.+..... .....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~-----~~~~~------------ 67 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDL-----VPDDL------------ 67 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCC-----CCHHH------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCc-----CCHHH------------
Confidence 479999999999999999999 689999999988876544444445555444432111 01100
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccc-------ccc---ccCCeEEEEEcCHHHHHHHHHhhC---
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEA-------KMD---KWTKPIVVVWVDPDTQLQRLMARD--- 147 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~-------~~~---~~~d~vi~l~~~~~~~~~Rl~~R~--- 147 (230)
....+ .... . .+ +++|+...... .+. ..+|.+||+++|++++.+|+.+|.
T Consensus 68 ------~~~~~--------~~~l-~-~~-~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~ 130 (186)
T 3cm0_A 68 ------ILELI--------REEL-A-ER-VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELE 130 (186)
T ss_dssp ------HHHHH--------HHHC-C-SE-EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHH
T ss_pred ------HHHHH--------HHHh-c-CC-EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccC
Confidence 00000 1111 1 12 56774321100 011 125789999999999999998884
Q ss_pred C---CCHHHHHHHHHhcCC----cccccccC--CEEEeCCCCHHHHHHHHHHHH
Q 026952 148 R---TSEEDARNRINAQMP----LDIKRNNA--DIVINNTGTLDDLNEQVRKVL 192 (230)
Q Consensus 148 ~---~~~~~~~~r~~~~~~----~~~~~~~a--d~iI~n~~~~~~v~~~i~~~l 192 (230)
+ .+.+.+.+|+..+.. ....+..+ +++|||+++++++.++|.+.+
T Consensus 131 ~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 131 GRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence 2 467777777764432 12233334 468999999999999998765
No 33
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.69 E-value=3.4e-16 Score=123.33 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=94.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|++|+|+|++||||||+|+.|+ .+|+.+++.|.+..... .... ..+. .+ .+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~------~~~~--~~g~-~~----------------~~~~~ 72 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN------IRKM--SEGI-PL----------------TDDDR 72 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH------HHHH--HHTC-CC----------------CHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh------HHHH--hcCC-CC----------------Cchhh
Confidence 4689999999999999999999 57999999998753211 0000 1111 00 00111
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecccc---cccc---CCeEEEEEcCHHHHHHHHHhhCC--CCH
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAK---MDKW---TKPIVVVWVDPDTQLQRLMARDR--TSE 151 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~---~~~~---~d~vi~l~~~~~~~~~Rl~~R~~--~~~ 151 (230)
..++. .+......+ ..+|+|+....+.. +... .+.+||+++|++++.+|+.+|.+ .+.
T Consensus 73 ~~~~~-------------~l~~~~~~~-~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~ 138 (202)
T 3t61_A 73 WPWLA-------------AIGERLASR-EPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPS 138 (202)
T ss_dssp HHHHH-------------HHHHHHTSS-SCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCH
T ss_pred HHHHH-------------HHHHHHhcC-CCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCH
Confidence 11111 011111233 34677755433221 1111 25789999999999999999864 344
Q ss_pred HHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 152 EDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 152 ~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
+.+...++...+. ....++++||++++++++.++|.++++.
T Consensus 139 ~~~~~~~~~~~~~--~~~~~~~~Id~~~~~~e~~~~I~~~l~~ 179 (202)
T 3t61_A 139 SLLQTQLETLEDP--RGEVRTVAVDVAQPLAEIVREALAGLAR 179 (202)
T ss_dssp HHHHHHHHHCCCC--TTSTTEEEEESSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC--CCCCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 4455444443322 2344788999999999999999988864
No 34
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.67 E-value=2.3e-16 Score=122.72 Aligned_cols=154 Identities=16% Similarity=0.279 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-h-CCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-A-NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~-~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
++|+|+|+|||||||+++.|+ . +|+.++++|.+.++.... ....+.++..+ +++. .+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~-----~~~~~~~~~~~------~~r~-------~~~~~ 72 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFY-----TEYDTELDTHI------IEEK-------DEDRL 72 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCS-----CC------CCC------CCHH-------HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhh-----hhHHHHhhhcc------cCCC-------CHHHH
Confidence 579999999999999999999 5 599999999987763110 00111111111 0000 00000
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee--eeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHH
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP--LLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNR 157 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~--~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r 157 (230)
.+. +......+++ .+++.. .+++. ..+|.+||+++|++++.+|+.+| +.+...+..+
T Consensus 73 ~~~----------------l~~~~~~~g~-~vi~~~~~~~~~~---~~~~~vi~l~~~~e~~~~Rl~~R-~~~~~~~~~~ 131 (184)
T 1y63_A 73 LDF----------------MEPIMVSRGN-HVVDYHSSELFPE---RWFHMVVVLHTSTEVLFERLTKR-QYSEAKRAEN 131 (184)
T ss_dssp HHH----------------HHHHHTSSSE-EEEECSCCTTSCG---GGCSEEEEEECCHHHHHHHHHHT-TCCHHHHHHH
T ss_pred HHH----------------HHHHHhccCC-EEEeCchHhhhhh---ccCCEEEEEECCHHHHHHHHHhC-CCChhhhHhh
Confidence 111 1111112333 355532 22222 23688999999999999999998 5555555555
Q ss_pred HHhc-CC-----cccccccCCEEEe-CCCCHHHHHHHHHHHHHHh
Q 026952 158 INAQ-MP-----LDIKRNNADIVIN-NTGTLDDLNEQVRKVLFEI 195 (230)
Q Consensus 158 ~~~~-~~-----~~~~~~~ad~iI~-n~~~~~~v~~~i~~~l~~~ 195 (230)
...+ +. ..+.+. +|++|+ |+++++++.+++.++++.+
T Consensus 132 ~~~q~~~~l~~~~~~~y~-~~~vi~~n~~~~~~~~~~v~~i~~~l 175 (184)
T 1y63_A 132 MEAEIQCICEEEARDAYE-DDIVLVRENDTLEQMAATVEEIRERV 175 (184)
T ss_dssp HHHHHTTHHHHHHHHHSC-GGGEEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-cCcEEECCCCCHHHHHHHHHHHHHHH
Confidence 4333 22 112222 477887 7789999988888777654
No 35
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.66 E-value=1.2e-16 Score=122.44 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=91.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|++|+|+|++||||||+|+.|+ .+|+.++++|.+.+... +.+ ...+.+..+. . .
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~--g~~-~~~~~~~~~~----------------~------~ 56 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS--GMT-VADVVAAEGW----------------P------G 56 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH--CSC-HHHHHHHHHH----------------H------H
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh--CCC-HHHHHHHcCH----------------H------H
Confidence 5789999999999999999999 57999999998876542 111 1111111000 0 0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe--eeecccccc--ccCCeEEEEEcCHHHHHHHHH--hh-CC---C
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV--PLLFEAKMD--KWTKPIVVVWVDPDTQLQRLM--AR-DR---T 149 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~--~~~~e~~~~--~~~d~vi~l~~~~~~~~~Rl~--~R-~~---~ 149 (230)
.. .+...+..... +.++++..+ ..+.+.... ...|.+||+++|++++.+|+. +| .. .
T Consensus 57 ~~------------~~~~~~~~~l~-~~~~vi~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~ 123 (173)
T 1e6c_A 57 FR------------RRESEALQAVA-TPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTL 123 (173)
T ss_dssp HH------------HHHHHHHHHHC-CSSEEEECCTTGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCT
T ss_pred HH------------HHHHHHHHHhh-cCCeEEECCCcEEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCCCCcC
Confidence 00 00001111112 344544443 222222111 125899999999999999998 77 22 2
Q ss_pred CHHHHHHHHHhcCC-cccccccCCEEEeCC-CCHHHHHHHHHHHHH
Q 026952 150 SEEDARNRINAQMP-LDIKRNNADIVINNT-GTLDDLNEQVRKVLF 193 (230)
Q Consensus 150 ~~~~~~~r~~~~~~-~~~~~~~ad~iI~n~-~~~~~v~~~i~~~l~ 193 (230)
..++...++..+.. ..+.+..+|++|||+ .+++++.++|.+.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 124 TGRPIAEEMEAVLREREALYQDVAHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCSEEEETTSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCcEEEECCCCCHHHHHHHHHHHhc
Confidence 33444445544332 122223378999998 699999999887663
No 36
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.66 E-value=3.9e-16 Score=122.02 Aligned_cols=167 Identities=17% Similarity=0.175 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-C---CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCCh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-N---DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS 77 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~---g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (230)
++|+|+|++||||||+++.|++ + |+.++.++.. .+.+....+.+.+. ++.+++......++ .
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~------~~~~~g~~~~~~~~------~~~~~~~~~~~~~~--~ 66 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP------GGTETGEKIRKILL------EEEVTPKAELFLFL--A 66 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESS------CSSHHHHHHHHHHH------HSCCCHHHHHHHHH--H
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCC------CCCcHHHHHHHHHH------hcCCCHHHHHHHHH--H
Confidence 4799999999999999999994 4 9998877542 12223333333332 12233322211111 1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee----eec-------cc----c---c---cccCCeEEEEEcCH
Q 026952 78 SKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP----LLF-------EA----K---M---DKWTKPIVVVWVDP 136 (230)
Q Consensus 78 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~----~~~-------e~----~---~---~~~~d~vi~l~~~~ 136 (230)
.....++. ++|.+ ..+..+++|.. ..+ .. . + ...+|.++|+++|+
T Consensus 67 ~r~~~~~~-i~~~l-------------~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~ 132 (197)
T 2z0h_A 67 SRNLLVTE-IKQYL-------------SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDV 132 (197)
T ss_dssp HHHHHHHH-HTTC-----------------CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCH
T ss_pred HHHHHHHH-HHHHH-------------hCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCH
Confidence 11222222 22222 12345666621 000 00 0 0 11368999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhcC-CcccccccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 137 DTQLQRLMARDRTSEEDARNRINAQM-PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 137 ~~~~~Rl~~R~~~~~~~~~~r~~~~~-~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
+++.+|+.+|++...+++..+..... +.........++|||+++++++.++|.+.+..++
T Consensus 133 e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l 193 (197)
T 2z0h_A 133 ETALKRKGELNRFEKREFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp HHHHHHC---CCCCCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 99999999997655446655554332 2222222234579999999999999998876543
No 37
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.65 E-value=4.1e-16 Score=124.67 Aligned_cols=168 Identities=16% Similarity=0.160 Sum_probs=99.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|++|+|.|+|||||||+++.|+ ++|+.++++|++.+.....+......+.+.+... ..+....+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g-----~~~~~~~~~~~------- 72 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKG-----QLVPDEIVVNM------- 72 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTT-----CCCCHHHHHHH-------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcC-----CcCCHHHHHHH-------
Confidence 6789999999999999999999 6899999999988764433444444444433211 01111111110
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeec-c--cccc---ccCCeEEEEEcCHHHHHHHHHhhCC-----
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLF-E--AKMD---KWTKPIVVVWVDPDTQLQRLMARDR----- 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~-e--~~~~---~~~d~vi~l~~~~~~~~~Rl~~R~~----- 148 (230)
+.+ .+......+.++ |+|+.... + ..+. ...|.+|||++|++++.+|+..|..
T Consensus 73 -----------~~~----~~~~~~~~~~~~-vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g 136 (222)
T 1zak_A 73 -----------VKE----RLRQPDAQENGW-LLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTG 136 (222)
T ss_dssp -----------HHH----HHHSHHHHHTCE-EEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTC
T ss_pred -----------HHH----HHhhccccCCcE-EEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccC
Confidence 000 110000012344 45862111 0 0111 2358999999999999999987631
Q ss_pred ------------------------CCHHHHHHHHHhcCC----cccccccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 149 ------------------------TSEEDARNRINAQMP----LDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 149 ------------------------~~~~~~~~r~~~~~~----~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
.+.+.+..|++.... ....+....++||++.+++++.++|.+.+...+
T Consensus 137 ~~~~~~~~pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~~~ev~~~I~~~l~~~l 212 (222)
T 1zak_A 137 KIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSIL 212 (222)
T ss_dssp CEEESSSSCCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred CccccccCCCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCCHHHHHHHHHHHHHhhc
Confidence 134556666543321 111233345689999999999999999887654
No 38
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.65 E-value=1.9e-16 Score=120.98 Aligned_cols=152 Identities=19% Similarity=0.157 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
|+|+|+|++||||||+|+.|+ .+|+.++++|.+.+.... .....+.+.++.. ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g---~~~~~~~~~~~~~----------------------~~ 55 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG---LSIPQIFEKKGEA----------------------YF 55 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT---SCHHHHHHHSCHH----------------------HH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC---CCHHHHHHHhChH----------------------HH
Confidence 479999999999999999999 489999999998765431 1122222221110 00
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe--eeecccccc--ccCCeEEEEEcCHHHHHHHHHhhCC---CC--H
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV--PLLFEAKMD--KWTKPIVVVWVDPDTQLQRLMARDR---TS--E 151 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~--~~~~e~~~~--~~~d~vi~l~~~~~~~~~Rl~~R~~---~~--~ 151 (230)
.. +...+.........+|+.++ +.+.+.... ..+|.+||+++|++++.+|+.+|.. .+ .
T Consensus 56 ~~------------~~~~~l~~l~~~~~~Vi~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~ 123 (168)
T 2pt5_A 56 RK------------LEFEVLKDLSEKENVVISTGGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSKERPLLKRPL 123 (168)
T ss_dssp HH------------HHHHHHHHHTTSSSEEEECCHHHHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTTCCBGGGSCG
T ss_pred HH------------HHHHHHHHHhccCCeEEECCCCEeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCCCCCCCcchH
Confidence 00 00011111122445555543 233322211 2268999999999999999987632 11 3
Q ss_pred HHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHH
Q 026952 152 EDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLF 193 (230)
Q Consensus 152 ~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~ 193 (230)
+.+..++.... +.+..+|++|+++.+++++.++|.+.+.
T Consensus 124 ~~i~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 124 DEIKNLFEERR---KIYSKADIKVKGEKPPEEVVKEILLSLE 162 (168)
T ss_dssp GGTHHHHHHHH---HHHTTSSEEEECSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHhCCEEECCCCCHHHHHHHHHHHHH
Confidence 33444444322 1222289888333799999999998876
No 39
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.62 E-value=7.5e-16 Score=119.49 Aligned_cols=159 Identities=14% Similarity=0.096 Sum_probs=89.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|+.|+|+|+|||||||+++.|+ ++|+.++++|.+....... + ...+.+.+|...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~--~-~~~~~~~~g~~~~--------------------- 60 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGA--D-IAWIFEMEGEAGF--------------------- 60 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTS--C-HHHHHHHHHHHHH---------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--C-hhhHHHHhCHHHH---------------------
Confidence 3579999999999999999999 6899999999987654321 1 1122222111100
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eeccccc---cccCCeEEEEEcCHHHHHHHH--HhhC---CCC
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLFEAKM---DKWTKPIVVVWVDPDTQLQRL--MARD---RTS 150 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~e~~~---~~~~d~vi~l~~~~~~~~~Rl--~~R~---~~~ 150 (230)
. .....+...+ ....+.++..+. ....... ....+.+||+++|++++.+|+ ..|. ..+
T Consensus 61 -~--------~~~~~~~~~~----~~~~~~vi~~gg~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~ 127 (185)
T 3trf_A 61 -R--------RREREMIEAL----CKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFI 127 (185)
T ss_dssp -H--------HHHHHHHHHH----HHSSSCEEECCTTGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCC
T ss_pred -H--------HHHHHHHHHH----HhcCCcEEecCCceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCC
Confidence 0 0001111111 122333444332 2222111 111247899999999999999 4332 233
Q ss_pred HHHHHHHHHhcC-Cccccc-ccCCEEEeCCC-CHHHHHHHHHHHHHHhh
Q 026952 151 EEDARNRINAQM-PLDIKR-NNADIVINNTG-TLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 151 ~~~~~~r~~~~~-~~~~~~-~~ad~iI~n~~-~~~~v~~~i~~~l~~~~ 196 (230)
.++...++.... ...+.+ ..+|++|||++ +++++.++|.+.+....
T Consensus 128 ~~~~~~~l~~~~~~r~~~y~~~ad~~Idt~~~~~~e~~~~I~~~l~~~~ 176 (185)
T 3trf_A 128 KNNSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIKQTY 176 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCSEEEECTTCCHHHHHHHHHHHSCC--
T ss_pred CCCHHHHHHHHHHHHHHHHhhcCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 333333333221 112222 34899999998 89999999988775443
No 40
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.61 E-value=3.1e-16 Score=123.73 Aligned_cols=160 Identities=15% Similarity=0.176 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh----CCCc--EEehhhhhHHh---hcCCchHHHHHHHHhCCcccCCCCccCHHHHHhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA----NDVP--VVDADIIARDV---LKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQI 72 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~----~g~~--~i~~d~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 72 (230)
.+|+|+|++||||||+++.|+. .|.. +++.|.+.... ...+...... ++ ++.+++..+.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~--------~~--~~~~d~~~l~~~ 92 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE--------YY--YLQWDVEWLTHQ 92 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHH--------HH--HTSSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccC--------CC--ccccCHHHHHHH
Confidence 5899999999999999999983 3543 44567765432 1122211111 11 245677777776
Q ss_pred hcCChHH--HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeeccccccccCCeEEEEEcCHHHHHHHHHhhCCCC
Q 026952 73 VFSDSSK--RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTS 150 (230)
Q Consensus 73 ~~~~~~~--~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~ 150 (230)
+|.+... ...+..+.++.-. ... ......+.+++|+|++++++..+...+|.+||+++|++++.+|+.+|+
T Consensus 93 v~~~l~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~--- 165 (201)
T 1rz3_A 93 LFRQLKASHQLTLPFYDHETDT---HSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV--- 165 (201)
T ss_dssp TGGGTTTCSEEEEEEEETTTTE---EEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC---------------
T ss_pred HHHHHhcCCccccCceeccCCC---CCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC---
Confidence 6543221 0011112222000 000 000012456899999998887777788999999999999999999996
Q ss_pred HHHHHHHH-HhcCC-------cccccccCCEEEeCCC
Q 026952 151 EEDARNRI-NAQMP-------LDIKRNNADIVINNTG 179 (230)
Q Consensus 151 ~~~~~~r~-~~~~~-------~~~~~~~ad~iI~n~~ 179 (230)
+++..++ +.+++ .......||++|+|++
T Consensus 166 -~~~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~~ 201 (201)
T 1rz3_A 166 -KQNIQKFINRYWKAEDYYLETEEPIKRADVVFDMTS 201 (201)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC---
T ss_pred -HHHHHHHHhheeHHHHHHhCCCCcHhhCcEEecCCC
Confidence 4455555 33333 2334678999999974
No 41
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.61 E-value=9.1e-15 Score=115.09 Aligned_cols=156 Identities=15% Similarity=0.108 Sum_probs=90.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
.+|+|+|++||||||+++.|+ .+|..+++.|.+..... ......+.. + .+....
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~--------~~~~~~g~~-~----------------~~~~~~ 84 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN--------IATMQRGIP-L----------------TDEDRW 84 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH--------HHHHHTTCC-C----------------CHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHH--------HHHHhcCCC-C----------------CCcccc
Confidence 379999999999999999999 57999999888742210 000111111 1 111111
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecccc---cccc--CCeEEEEEcCHHHHHHHHHhhCCC--CHHH
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAK---MDKW--TKPIVVVWVDPDTQLQRLMARDRT--SEED 153 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~---~~~~--~d~vi~l~~~~~~~~~Rl~~R~~~--~~~~ 153 (230)
..+.. + ..........+. .++++...+.+.. +... ...+||+++|++++.+|+.+|.+. +.+.
T Consensus 85 ~~~~~-----~----~~~~~~~~~~g~-~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~ 154 (200)
T 4eun_A 85 PWLRS-----L----AEWMDARADAGV-STIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMPASL 154 (200)
T ss_dssp HHHHH-----H----HHHHHHHHHTTC-CEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGGG
T ss_pred cHHHH-----H----HHHHHHHHhcCC-CEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHHH
Confidence 11110 0 011111112333 3566754443322 1111 136799999999999999988653 3334
Q ss_pred HHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 154 ARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 154 ~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
+...++...+. +...++++|||+++++++.++|.+.++.
T Consensus 155 l~~~~~~~~~~--~~~~~~~~Id~~~~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 155 LQSQLATLEAL--EPDESGIVLDLRQPPEQLIERALTWLDI 193 (200)
T ss_dssp HHHHHHHCCCC--CTTSCEEEEETTSCHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCC--CCCCCeEEEECCCCHHHHHHHHHHHHHh
Confidence 44444433222 2234789999999999999999888753
No 42
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.61 E-value=2.9e-14 Score=109.54 Aligned_cols=156 Identities=16% Similarity=0.154 Sum_probs=91.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHH-HhCCcccCCCCccCHHHHHhhhcCChH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVA-AFGEDILLPNGEVDRSKLGQIVFSDSS 78 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (230)
|.+|+|+|++||||||+++.|+ .+|..+++.|.+.+. ..+.+ .+|..+ ... .
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~---------~~~~~~~~g~~~-------~~~----------~ 61 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPR---------RNIEKMASGEPL-------NDD----------D 61 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCH---------HHHHHHHTTCCC-------CHH----------H
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccch---------HHHHHhhcCcCC-------Ccc----------c
Confidence 3589999999999999999999 579999999887532 01111 122211 100 0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecccc---cccc-CC-eEEEEEcCHHHHHHHHHhhCCCC--H
Q 026952 79 KRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAK---MDKW-TK-PIVVVWVDPDTQLQRLMARDRTS--E 151 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~---~~~~-~d-~vi~l~~~~~~~~~Rl~~R~~~~--~ 151 (230)
...++.. + ...+......+. .+|++...+.+.. +... .+ .+||+++|++++.+|+.+|++.+ .
T Consensus 62 ~~~~~~~-----~----~~~~~~~~~~~~-~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~~~ 131 (175)
T 1knq_A 62 RKPWLQA-----L----NDAAFAMQRTNK-VSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKT 131 (175)
T ss_dssp HHHHHHH-----H----HHHHHHHHHHCS-EEEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCCH
T ss_pred cccHHHH-----H----HHHHHHHHhcCC-cEEEEeCchHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCCch
Confidence 0011110 0 011111111233 4577754433322 2222 25 68999999999999999986532 3
Q ss_pred HHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHH
Q 026952 152 EDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLF 193 (230)
Q Consensus 152 ~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~ 193 (230)
+.+...+....+. .+...+|++|||+++++++.++|.+.+.
T Consensus 132 ~~~~~~~~~~~~~-~~~~~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 132 QMLVTQFETLQEP-GADETDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp HHHHHHHHHCCCC-CTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhCc-ccCCCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 3333333322111 0234578999999999999999988764
No 43
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.61 E-value=3.8e-16 Score=130.07 Aligned_cols=174 Identities=13% Similarity=0.074 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-CC-----CcEEehhhhhHH-hhcCCchHHHHHHHHhCCcccCC--CCccCHHHHHhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-ND-----VPVVDADIIARD-VLKKGTGGWKKVVAAFGEDILLP--NGEVDRSKLGQI 72 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~g-----~~~i~~d~~~~~-~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~l~~~ 72 (230)
++|+|+|++||||||+|+.|++ +| +.++++|++++. ...... .... .+..|...++. .+.++...+...
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~-~~~~-~~~~g~~~~~~fg~~~~d~~~l~~~ 83 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKA-ELDR-RYAAGDATFSHFSYEANELKELERV 83 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHH-HHHH-HHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhh-hhhh-hhhccCcCcCCCChhhhcHHHHHHH
Confidence 4899999999999999999994 56 789999999862 221000 0000 01111111111 112222222111
Q ss_pred hcCChHHHHHHHhhhhHHHHHHHHHH-----HHH------HHhcCCcEEEEEeeeec----cccccccCCeEEEEEcCHH
Q 026952 73 VFSDSSKRQLLNGLLAPYISLGIFME-----VLK------LWIKGCKVIVLDVPLLF----EAKMDKWTKPIVVVWVDPD 137 (230)
Q Consensus 73 ~~~~~~~~~~l~~~~~p~v~~~~~~~-----~~~------~~~~~~~~viie~~~~~----e~~~~~~~d~vi~l~~~~~ 137 (230)
+ ...........|.+.....+. ... ....+.+++++|++.++ +..+...+|.+||+++|.+
T Consensus 84 l----~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~ 159 (290)
T 1a7j_A 84 F----REYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVIN 159 (290)
T ss_dssp H----HHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHH
T ss_pred H----HHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHH
Confidence 0 000000111111110000000 000 00124568999998775 4556677899999999999
Q ss_pred HHHHHHHhhC----CCCHHHHHHHHHhcCCc-----ccccccCCE------EEeCCCCH
Q 026952 138 TQLQRLMARD----RTSEEDARNRINAQMPL-----DIKRNNADI------VINNTGTL 181 (230)
Q Consensus 138 ~~~~Rl~~R~----~~~~~~~~~r~~~~~~~-----~~~~~~ad~------iI~n~~~~ 181 (230)
++.+|+.+|+ |.+.+++..++.++++. .+....||+ +|||+++.
T Consensus 160 ~rl~Rrl~Rd~~~RG~s~e~v~~~i~~r~~~~~r~i~p~~~~AD~~~~~~~vIDns~~~ 218 (290)
T 1a7j_A 160 LEWIQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQRVPVVDTSNPF 218 (290)
T ss_dssp HHHHHHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGGGGTCSEEEEEEESSCCSCGG
T ss_pred HHHHHHhhhhhhhcCCChHHHHHHHHHhCccHHHhhhhhhccCCEeeccCceecCCCcc
Confidence 9999999887 77777776666555443 456788999 78998754
No 44
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.60 E-value=1.7e-16 Score=133.31 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-CC-------CcEEehhhhhHHhhcCCchHHHHHHHHhCCc-ccCCCCccCHHHHHhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-ND-------VPVVDADIIARDVLKKGTGGWKKVVAAFGED-ILLPNGEVDRSKLGQI 72 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~g-------~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~~ 72 (230)
.+|+|+|++||||||+++.|+. .+ +.++++|.+... . ...+..+.- .+...+.++...+...
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~-----~----~~~~~~~~vq~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP-----N----QVLKERGLMKKKGFPESYDMHRLVKF 151 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC-----H----HHHHHHTCTTCTTSGGGBCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCc-----H----HHHHhCCEeecCCCCCCccHHHHHHH
Confidence 5899999999999999999983 33 567888877531 0 011111110 0111122233222221
Q ss_pred hcCChHHHHHHHh-hhhHHHHHHHHHHHHH--HHhcCCcEEEEEeeeeccc-----------cccccCCeEEEEEcCHHH
Q 026952 73 VFSDSSKRQLLNG-LLAPYISLGIFMEVLK--LWIKGCKVIVLDVPLLFEA-----------KMDKWTKPIVVVWVDPDT 138 (230)
Q Consensus 73 ~~~~~~~~~~l~~-~~~p~v~~~~~~~~~~--~~~~~~~~viie~~~~~e~-----------~~~~~~d~vi~l~~~~~~ 138 (230)
+. ....... +.+|.+...+...+.. ....+.+++|+|++.+++. .+...+|.+||+++|.++
T Consensus 152 ~~----~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~ 227 (308)
T 1sq5_A 152 VS----DLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDL 227 (308)
T ss_dssp HH----HHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHH
T ss_pred HH----HHhCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHH
Confidence 10 0000001 2223222111100000 0012356899999988765 566779999999999999
Q ss_pred HHHHHHhhC-------------------CCCHHHHHHHHHhcCC----------cccccccCCEEEeCCCC
Q 026952 139 QLQRLMARD-------------------RTSEEDARNRINAQMP----------LDIKRNNADIVINNTGT 180 (230)
Q Consensus 139 ~~~Rl~~R~-------------------~~~~~~~~~r~~~~~~----------~~~~~~~ad~iI~n~~~ 180 (230)
+.+|+.+|. |.+.+++..++..+++ ..+....||++|+|+++
T Consensus 228 ~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~ 298 (308)
T 1sq5_A 228 LQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSAN 298 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGG
T ss_pred HHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCC
Confidence 999999884 7889999999887654 25667899999998864
No 45
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.60 E-value=7.2e-15 Score=117.25 Aligned_cols=165 Identities=13% Similarity=0.020 Sum_probs=99.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|++|+|.|+|||||||+|+.|+ .+|+.++++|++.++....+.+....+.+.+.... .+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~-----~~~~~~~---------- 68 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGG-----LVSDDIM---------- 68 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTC-----CCCHHHH----------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCC-----cCCHHHH----------
Confidence 6789999999999999999999 68999999999988765545555555554442111 0111110
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eecc------c---cccccCCeEEEEEcCHHHHHHHHHhhCC-
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLFE------A---KMDKWTKPIVVVWVDPDTQLQRLMARDR- 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~e------~---~~~~~~d~vi~l~~~~~~~~~Rl~~R~~- 148 (230)
...+. ..+......+. .+|+|+. ...+ . .....+|.+|||++|++++.+|+.+|..
T Consensus 69 --------~~~l~----~~l~~~~~~~~-~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~ 135 (220)
T 1aky_A 69 --------VNMIK----DELTNNPACKN-GFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIH 135 (220)
T ss_dssp --------HHHHH----HHHHHCGGGGS-CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred --------HHHHH----HHHHhccccCC-CeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCcc
Confidence 01111 11110001223 3577852 1111 0 0112468999999999999999987731
Q ss_pred --------------------------------CCHHHHHHHHHhcCC----ccccccc-CC-EEEeCCCCHHHHHHHHHH
Q 026952 149 --------------------------------TSEEDARNRINAQMP----LDIKRNN-AD-IVINNTGTLDDLNEQVRK 190 (230)
Q Consensus 149 --------------------------------~~~~~~~~r~~~~~~----~~~~~~~-ad-~iI~n~~~~~~v~~~i~~ 190 (230)
.+.+.+..|++.... ....+.. .. +.||++.+++++.++|.+
T Consensus 136 ~~~g~~y~~~~~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~ 215 (220)
T 1aky_A 136 PASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILN 215 (220)
T ss_dssp TTTCCEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHH
T ss_pred CccCCccccccCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHH
Confidence 235556666643321 1112222 22 467888899999999988
Q ss_pred HHH
Q 026952 191 VLF 193 (230)
Q Consensus 191 ~l~ 193 (230)
.+.
T Consensus 216 ~l~ 218 (220)
T 1aky_A 216 KLG 218 (220)
T ss_dssp HHT
T ss_pred HHh
Confidence 764
No 46
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.60 E-value=3.3e-15 Score=119.77 Aligned_cols=163 Identities=19% Similarity=0.203 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
+..+|.|+|||||||+|+.|+ ++|+++++++++.++....+++....+.+.+......++ +.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpd-----ei------------ 71 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPD-----SL------------ 71 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCH-----HH------------
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhcccccc-----HH------------
Confidence 457999999999999999999 699999999999998776677777777666543221111 11
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eecc-c-cc---cccCCeEEEEEcCHHHHHHHHHhhC-------
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLFE-A-KM---DKWTKPIVVVWVDPDTQLQRLMARD------- 147 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~e-~-~~---~~~~d~vi~l~~~~~~~~~Rl~~R~------- 147 (230)
+. ..+.+.+... ....+ +|+||. -... . .+ ....|.+|+|++|++++.+|+.+|.
T Consensus 72 ------~~----~ll~~~l~~~-~~~~g-~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~ 139 (230)
T 3gmt_A 72 ------II----GLVKERLKEA-DCANG-YLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGR 139 (230)
T ss_dssp ------HH----HHHHHHHHSG-GGTTC-EEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTE
T ss_pred ------HH----HHHHHHHhCc-ccCCC-eEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCC
Confidence 10 1111122111 11223 577862 2111 1 11 2246899999999999999999884
Q ss_pred --------------------------CCCHHHHHHHHHhcC----Cccccccc------------CC-EEEeCCCCHHHH
Q 026952 148 --------------------------RTSEEDARNRINAQM----PLDIKRNN------------AD-IVINNTGTLDDL 184 (230)
Q Consensus 148 --------------------------~~~~~~~~~r~~~~~----~~~~~~~~------------ad-~iI~n~~~~~~v 184 (230)
.++++.+.+|++.+. ++..++.. .. ..||++++++++
T Consensus 140 ~Yh~~~~pp~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV 219 (230)
T 3gmt_A 140 TYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEI 219 (230)
T ss_dssp EEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-------
T ss_pred cccccCCCCCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHH
Confidence 135788888886543 33333332 12 358999999999
Q ss_pred HHHHHHHHH
Q 026952 185 NEQVRKVLF 193 (230)
Q Consensus 185 ~~~i~~~l~ 193 (230)
.++|.+.+.
T Consensus 220 ~~~i~~~l~ 228 (230)
T 3gmt_A 220 RARVRRAQV 228 (230)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 999988764
No 47
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.60 E-value=1.2e-14 Score=117.13 Aligned_cols=166 Identities=15% Similarity=0.073 Sum_probs=101.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|+.|+|.|++||||||+|+.|+ ++|+.++++|++.++....+......+.+.+.... .+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~-----~~~~~~----------- 79 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGK-----LVSDEM----------- 79 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTC-----CCCHHH-----------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCC-----cCCHHH-----------
Confidence 5789999999999999999999 68999999999888755444444444444332110 011100
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeec------cccc---cccCCeEEEEEcCHHHHHHHHHhhC--
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLF------EAKM---DKWTKPIVVVWVDPDTQLQRLMARD-- 147 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~------e~~~---~~~~d~vi~l~~~~~~~~~Rl~~R~-- 147 (230)
....+ ...+... ..+. .+|+|+ +... ...+ ....|.+||+++|++++.+|+..|.
T Consensus 80 -------~~~~i----~~~l~~~-~~~~-g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~ 146 (233)
T 1ak2_A 80 -------VLELI----EKNLETP-PCKN-GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIH 146 (233)
T ss_dssp -------HHHHH----HHHHTSG-GGTT-CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEEC
T ss_pred -------HHHHH----HHHHhcc-cccC-cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcC
Confidence 00111 1111100 1122 357775 2111 0001 1236899999999999999998873
Q ss_pred -----------------------C--------CCHHHHHHHHHhcCC----cccccc--cCCEEEeCCCCHHHHHHHHHH
Q 026952 148 -----------------------R--------TSEEDARNRINAQMP----LDIKRN--NADIVINNTGTLDDLNEQVRK 190 (230)
Q Consensus 148 -----------------------~--------~~~~~~~~r~~~~~~----~~~~~~--~ad~iI~n~~~~~~v~~~i~~ 190 (230)
+ .+.+.+.+|+..... ....+. ...++||++++++++.++|.+
T Consensus 147 ~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~ 226 (233)
T 1ak2_A 147 PQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILA 226 (233)
T ss_dssp TTTCCEEBTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHH
T ss_pred CccCCccccccCCCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHH
Confidence 1 235667777654322 112222 235679999999999999999
Q ss_pred HHHHh
Q 026952 191 VLFEI 195 (230)
Q Consensus 191 ~l~~~ 195 (230)
.+..+
T Consensus 227 ~l~~~ 231 (233)
T 1ak2_A 227 AFSKA 231 (233)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88754
No 48
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.60 E-value=1.7e-15 Score=119.93 Aligned_cols=181 Identities=17% Similarity=0.187 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-CC--CcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-ND--VPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSS 78 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~g--~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (230)
.+|+|+|++||||||+++.|+. ++ +.+++.|.+++..... ...... .+ .+..++..++..+.+.+ +
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~--~~~~~~--~~---~~~~~~~~~~~~~~~~l----~ 75 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHL--PLEERL--RV---NYDHPDAFDLALYLEHA----Q 75 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTS--CHHHHH--HS---CTTSGGGBCHHHHHHHH----H
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccc--cHHHhc--CC---CCCChhhhhHHHHHHHH----H
Confidence 5899999999999999999994 57 8899998876532211 111111 11 11122233333332221 0
Q ss_pred HHHHHHhhhhHHHHHHHHHHH-HHHHhcCCcEEEEEeeeecc-ccccccCCeEEEEEcCHHHHHHHHHhhC----CCCHH
Q 026952 79 KRQLLNGLLAPYISLGIFMEV-LKLWIKGCKVIVLDVPLLFE-AKMDKWTKPIVVVWVDPDTQLQRLMARD----RTSEE 152 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~-~~~~~~~~~~viie~~~~~e-~~~~~~~d~vi~l~~~~~~~~~Rl~~R~----~~~~~ 152 (230)
.....+.+.+|.+......+. ..........+++|++.++. +.....+|.++|++++.+.+..|+..|. |.+..
T Consensus 76 ~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~ 155 (211)
T 3asz_A 76 ALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLE 155 (211)
T ss_dssp HHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHH
Confidence 111111111111000000000 00000123467888777663 4455678999999999999888776653 67777
Q ss_pred HHHHHHHhcCC------cccccccCCEEEeCCCC----HHHHHHHHHHHHH
Q 026952 153 DARNRINAQMP------LDIKRNNADIVINNTGT----LDDLNEQVRKVLF 193 (230)
Q Consensus 153 ~~~~r~~~~~~------~~~~~~~ad~iI~n~~~----~~~v~~~i~~~l~ 193 (230)
.+..++..+.. .++....||++|+|+++ ++.+.++|.++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~~~~~~~~~~~~~i~~~~~ 206 (211)
T 3asz_A 156 GVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEMLAAKALARLA 206 (211)
T ss_dssp HHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTTSCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhhhhhHHHhcccchhcCeEEEeCCCcchHHHHHHHHHHHHHHH
Confidence 66666544431 35566789999999988 6666666666553
No 49
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.60 E-value=1.2e-14 Score=116.37 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|+|.|+|||||||+|+.|+ .+|+.++++|++.++....+.+....+.+.+. +|.+.. .
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~------~g~~~~----------~--- 61 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID------RGDLVP----------D--- 61 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT------TTCCCC----------H---
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH------cCCcCc----------H---
Confidence 479999999999999999999 57999999999988764444444555544432 111100 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeec------cc---cccccCCeEEEEEcCHHHHHHHHHhhCC--
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLF------EA---KMDKWTKPIVVVWVDPDTQLQRLMARDR-- 148 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~------e~---~~~~~~d~vi~l~~~~~~~~~Rl~~R~~-- 148 (230)
+ ...+.+. ..+... . +..+|+|+ +... .. .....+|.++|+++|++++.+|+.+|..
T Consensus 62 ~----~~~~~i~----~~l~~~--~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~ 130 (223)
T 2xb4_A 62 D----ITIPMVL----ETLESK--G-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICK 130 (223)
T ss_dssp H----HHHHHHH----HHHHHH--C-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEES
T ss_pred H----HHHHHHH----HHHhcc--c-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCc
Confidence 0 1111111 111111 1 34578885 2210 00 0112468999999999999999998841
Q ss_pred C---------------------------------CHH-HHHHHHHhcCC----ccc---cccc------C-CEEEeCCCC
Q 026952 149 T---------------------------------SEE-DARNRINAQMP----LDI---KRNN------A-DIVINNTGT 180 (230)
Q Consensus 149 ~---------------------------------~~~-~~~~r~~~~~~----~~~---~~~~------a-d~iI~n~~~ 180 (230)
. +.+ .+.+|+..... ... .+.. . .++||++++
T Consensus 131 ~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~ 210 (223)
T 2xb4_A 131 NNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGS 210 (223)
T ss_dssp SCTTSCCBTTCGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSC
T ss_pred cccCCccccccCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCC
Confidence 1 245 77777754322 122 2322 1 257899999
Q ss_pred HHHHHHHHHHHH
Q 026952 181 LDDLNEQVRKVL 192 (230)
Q Consensus 181 ~~~v~~~i~~~l 192 (230)
++++.++|.+.+
T Consensus 211 ~~~v~~~i~~~l 222 (223)
T 2xb4_A 211 IDSIKDTLLAQL 222 (223)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 50
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.59 E-value=2.1e-15 Score=116.86 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|+|+|+|||||||+|+.|+ .+|+.+++.|.+.+..... . ...+.+..|. ..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~--~-~~~~~~~~g~-----------~~~----------- 57 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGR--S-IADIFATDGE-----------QEF----------- 57 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSS--C-HHHHHHHHCH-----------HHH-----------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCC--C-HHHHHHHhCh-----------HHH-----------
Confidence 579999999999999999999 5899999999987764321 1 1111111100 000
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eecccccccc--CCeEEEEEcCHHHHHHHHHhhCC---CCHHHH
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLFEAKMDKW--TKPIVVVWVDPDTQLQRLMARDR---TSEEDA 154 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~e~~~~~~--~d~vi~l~~~~~~~~~Rl~~R~~---~~~~~~ 154 (230)
.. .. ..+...+. .....++..+. .+........ .+.+||+++|++++.+|+.+|.+ ...++.
T Consensus 58 ~~---~~-----~~~~~~~~----~~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~ 125 (184)
T 2iyv_A 58 RR---IE-----EDVVRAAL----ADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDR 125 (184)
T ss_dssp HH---HH-----HHHHHHHH----HHCCSEEECCTTGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCH
T ss_pred HH---HH-----HHHHHHHH----hcCCeEEecCCcEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCH
Confidence 00 00 00111111 11233444442 2222111111 57899999999999999988753 111112
Q ss_pred HHHHHhcCC-cccc-cccCCEEEeCC-CCHHHHHHHHHHHHH
Q 026952 155 RNRINAQMP-LDIK-RNNADIVINNT-GTLDDLNEQVRKVLF 193 (230)
Q Consensus 155 ~~r~~~~~~-~~~~-~~~ad~iI~n~-~~~~~v~~~i~~~l~ 193 (230)
..+++.... ..+. ...+|++|||+ .+++++.++|.+.++
T Consensus 126 ~~~i~~~~~~r~~~~~~~~~~~Idt~~~s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 126 AEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQ 167 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEECSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhccCCEEEECCCCCHHHHHHHHHHHHh
Confidence 222322211 1122 24589999999 699999999887664
No 51
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.58 E-value=1.1e-14 Score=116.15 Aligned_cols=162 Identities=16% Similarity=0.149 Sum_probs=94.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|+.|+|.|+|||||||+|+.|+ ++|+.++++|++.++....+++....+.+.+... ..+...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g-----~~~~~~------------ 67 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESG-----NFVGDE------------ 67 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHT-----CCCCHH------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCC-----CcCCHH------------
Confidence 6789999999999999999999 6899999999998865443332223333322110 000110
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eec------cc---cccccCCeEEEEEcCHHHHHHHHHhhCC-
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLF------EA---KMDKWTKPIVVVWVDPDTQLQRLMARDR- 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~------e~---~~~~~~d~vi~l~~~~~~~~~Rl~~R~~- 148 (230)
. ....+ ...+.. ...+ ..+|+|+. ... .. .....+|.+|||++|++++.+|+.+|..
T Consensus 68 --~----~~~~i----~~~l~~-~~~~-~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~ 135 (217)
T 3be4_A 68 --I----VLGLV----KEKFDL-GVCV-NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTH 135 (217)
T ss_dssp --H----HHHHH----HHHHHT-TTTT-TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred --H----HHHHH----HHHHhc-cccC-CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCC
Confidence 0 01111 111111 1123 34677852 110 10 0112458999999999999999998731
Q ss_pred --------------------------------CCHHHHHHHHHhcC----CcccccccC-C-EEEeCCCCHHHHHHHHHH
Q 026952 149 --------------------------------TSEEDARNRINAQM----PLDIKRNNA-D-IVINNTGTLDDLNEQVRK 190 (230)
Q Consensus 149 --------------------------------~~~~~~~~r~~~~~----~~~~~~~~a-d-~iI~n~~~~~~v~~~i~~ 190 (230)
.+.+.+..++.... +....+... . +.||++.+++++.++|.+
T Consensus 136 ~~~g~~y~~~~~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~ 215 (217)
T 3be4_A 136 PASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKK 215 (217)
T ss_dssp TTTCCEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHH
T ss_pred ccccCccccccCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHh
Confidence 23555666665322 221223222 3 467999999999999876
Q ss_pred H
Q 026952 191 V 191 (230)
Q Consensus 191 ~ 191 (230)
.
T Consensus 216 ~ 216 (217)
T 3be4_A 216 I 216 (217)
T ss_dssp H
T ss_pred h
Confidence 4
No 52
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.58 E-value=2.5e-14 Score=112.92 Aligned_cols=173 Identities=18% Similarity=0.165 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|+|+|++||||||+++.|+ ++|+++++ +++++......+.. ....+.++..... +...++.++ .
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~-~~~~~~~~e~~~~---------~~~~~~~~~--~ 73 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYS-KEVLERFDEKPMN---------FAFIPVPAG--G 73 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------------
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCC-HHHHHHHhhhchh---------HHHHHhccc--c
Confidence 489999999999999999999 69999999 66766544322211 1222222221100 000000000 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHh-cCCcEEEEEee---eeccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHH
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWI-KGCKVIVLDVP---LLFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARN 156 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~-~~~~~viie~~---~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~ 156 (230)
. .....+.+.....+.+.+... ..++ +|+++. .++... ...++|||++|++++.+|+.++.+.+.+++..
T Consensus 74 ~--~~~~~~~~~~~~~~~i~~la~~~~~~-~Vi~Gr~g~~vl~~~---~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~ 147 (201)
T 3fdi_A 74 T--TISLEQDIAIRQFNFIRKKANEEKES-FVIVGRCAEEILSDN---PNMISAFILGDKDTKTKRVMEREGVDEKTALN 147 (201)
T ss_dssp --------CHHHHHHHHHHHHHHHTSCCC-EEEESTTHHHHTTTC---TTEEEEEEEECHHHHHHHHHHHHTCCHHHHHH
T ss_pred c--cccccHHHHHHHHHHHHHHHhhcCCC-EEEEECCcchhcCCC---CCeEEEEEECCHHHHHHHHHHHhCCCHHHHHH
Confidence 0 000112222222222222220 2334 466543 222211 12478999999999999999887878776655
Q ss_pred HHHhcC-----------C-cccccccCCEEEeCCC-CHHHHHHHHHHHHH
Q 026952 157 RINAQM-----------P-LDIKRNNADIVINNTG-TLDDLNEQVRKVLF 193 (230)
Q Consensus 157 r~~~~~-----------~-~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~ 193 (230)
++.+.. . .......+|++||++. +++++.+.|.+.++
T Consensus 148 ~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~ 197 (201)
T 3fdi_A 148 MMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYID 197 (201)
T ss_dssp HHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHH
Confidence 543211 1 1112345799999987 89999999988775
No 53
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.58 E-value=1.3e-15 Score=120.04 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=44.2
Q ss_pred CcEEEEEeeeeccccccccC-Ce-EEEEE-cCHHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHH
Q 026952 107 CKVIVLDVPLLFEAKMDKWT-KP-IVVVW-VDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDD 183 (230)
Q Consensus 107 ~~~viie~~~~~e~~~~~~~-d~-vi~l~-~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~ 183 (230)
+..+++|++......+...+ |. ++|+. ++++++.+|+.+|++.+.+.+..|+..+......+..+|++|+|+ ++++
T Consensus 97 g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~~~~~~d~vI~n~-~~e~ 175 (207)
T 2j41_A 97 GHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVND-EVEL 175 (207)
T ss_dssp TCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------CGGGGGGGCSEEEECS-SHHH
T ss_pred CCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhccccCCEEEECC-CHHH
Confidence 45788998765544444334 64 44444 357799999999977777888888887766555567799999988 8999
Q ss_pred HHHHHHHHHHHhhCC
Q 026952 184 LNEQVRKVLFEIKRP 198 (230)
Q Consensus 184 v~~~i~~~l~~~~~~ 198 (230)
+.++|.+++.....+
T Consensus 176 ~~~~i~~~l~~~~~~ 190 (207)
T 2j41_A 176 AKNRIQCIVEAEHLK 190 (207)
T ss_dssp HHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999765443
No 54
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.57 E-value=3.4e-14 Score=109.69 Aligned_cols=157 Identities=11% Similarity=0.037 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEE-ehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVV-DADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSS 78 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i-~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (230)
|++|+|+|+|||||||+|+.|+ ++|..++ +.+... ..+.+.+. ++.-. +.. ...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g-----------~~i~~~~~------~g~~~---~~~----~~~ 60 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMG-----------QALRKLTP------GFSGD---PQE----HPM 60 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHH-----------HHHHHTST------TCCSC---GGG----STT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhH-----------HHHHHhCc------cccch---hhh----hHH
Confidence 5789999999999999999999 6898887 432221 12222222 11000 000 000
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecc----cc--ccccCC---eEEEEEcCHHHHHHHHHhhCC-
Q 026952 79 KRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFE----AK--MDKWTK---PIVVVWVDPDTQLQRLMARDR- 148 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e----~~--~~~~~d---~vi~l~~~~~~~~~Rl~~R~~- 148 (230)
..+.+.. .+ ......++..+++|+..... .. .....+ ..||+++|++++.+|+.+|..
T Consensus 61 ~~~~~~~--------~i----~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r 128 (183)
T 2vli_A 61 WIPLMLD--------AL----QYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQP 128 (183)
T ss_dssp HHHHHHH--------HH----HHHHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC---
T ss_pred HHHHHHH--------HH----HHHHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcccc
Confidence 0011111 11 11112334567788654221 10 001122 349999999999999998853
Q ss_pred -CCHHHHHHHHHhcCCcccccccCCEEEeCC-CCHHHHHHHHHHHHHHhhCC
Q 026952 149 -TSEEDARNRINAQMPLDIKRNNADIVINNT-GTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 149 -~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~-~~~~~v~~~i~~~l~~~~~~ 198 (230)
.+.+.+...++...+. ..++ +|||+ .+++++.++|.+.++...++
T Consensus 129 ~~~~~~~~~~~~~~~~~----~~~~-~Id~~~~~~~~~~~~I~~~l~~~~~~ 175 (183)
T 2vli_A 129 QVNVGTVEDRLNELRGE----QFQT-HIDTAGLGTQQVAEQIAAQVGLTLAP 175 (183)
T ss_dssp -CCHHHHHHHHHHHTSG----GGCS-EEECTTCCHHHHHHHHHHHHTCCCCC
T ss_pred chhHHHHHHHHHhhccc----ccce-EeeCCCCCHHHHHHHHHHHHHHhcCC
Confidence 3455555444444333 2356 99998 69999999999988765543
No 55
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.57 E-value=2.2e-14 Score=115.01 Aligned_cols=167 Identities=17% Similarity=0.073 Sum_probs=99.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|++|+|+|+|||||||+|+.|+ .+|+.++++|++.+.....+.+....+.+.+... ..+.......
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g-----~~~~~~~~~~-------- 73 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQG-----KLIPDDVMTR-------- 73 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTT-----CCCCHHHHHH--------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcC-----CcCCHHHHHH--------
Confidence 5789999999999999999999 7999999999988775544444444444443211 1111111100
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eecc--cccc--ccCCeEEEEEcCHHHHHHHHHhhC-----C-
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLFE--AKMD--KWTKPIVVVWVDPDTQLQRLMARD-----R- 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~e--~~~~--~~~d~vi~l~~~~~~~~~Rl~~R~-----~- 148 (230)
.+.+.+... .+. .+|+|+. .... ..+. ...|.+|||++|++++.+|+.+|. +
T Consensus 74 --------------~~~~~l~~~--~~~-~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~ 136 (227)
T 1zd8_A 74 --------------LALHELKNL--TQY-SWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGR 136 (227)
T ss_dssp --------------HHHHHHHTC--TTS-CEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEEEETTTTE
T ss_pred --------------HHHHHHhcc--cCC-CEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCcCCCccCC
Confidence 011111100 123 3567852 2111 0111 346899999999999999998762 1
Q ss_pred ---------------------------CCHHHHHHHHHhcCCc----ccccc--cCCEEEeCCCCHHHHHHHHHHHHHHh
Q 026952 149 ---------------------------TSEEDARNRINAQMPL----DIKRN--NADIVINNTGTLDDLNEQVRKVLFEI 195 (230)
Q Consensus 149 ---------------------------~~~~~~~~r~~~~~~~----~~~~~--~ad~iI~n~~~~~~v~~~i~~~l~~~ 195 (230)
.+.+.+.+|+...... ...+. ..-++||++ +++++.++|.+++...
T Consensus 137 ~y~~~~~pp~~~~~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~ 215 (227)
T 1zd8_A 137 VYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTK 215 (227)
T ss_dssp EEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTT
T ss_pred ccccccCCCCcccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhh
Confidence 2345666665433211 11221 112468887 9999999999998765
Q ss_pred hCC
Q 026952 196 KRP 198 (230)
Q Consensus 196 ~~~ 198 (230)
...
T Consensus 216 ~~~ 218 (227)
T 1zd8_A 216 VPQ 218 (227)
T ss_dssp SCC
T ss_pred cCC
Confidence 544
No 56
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.57 E-value=7.5e-15 Score=112.99 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=88.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
|++|+|+|+|||||||+|+.|+ ++|+.+++.|.+.+...... ...+.+..+. ..
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~~---~~~~~~~~g~----------------------~~ 58 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQK---VSEIFEQKRE----------------------NF 58 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSC---HHHHHHHHCH----------------------HH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCCC---HHHHHHHcCH----------------------HH
Confidence 5689999999999999999999 68999999999876532110 1111111000 00
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe-eeeccccccccCCeEEEEEcCHHHHHHHHHhhC--C---CC-HH
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV-PLLFEAKMDKWTKPIVVVWVDPDTQLQRLMARD--R---TS-EE 152 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~-~~~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~--~---~~-~~ 152 (230)
... ....+... .......++..+ .......+. ..+.+||+++|++++.+|+.+|. . .. .+
T Consensus 59 ~~~--------~~~~~~~~----l~~~~~~vi~~g~~~~~~~~l~-~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~ 125 (175)
T 1via_A 59 FRE--------QEQKMADF----FSSCEKACIATGGGFVNVSNLE-KAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEI 125 (175)
T ss_dssp HHH--------HHHHHHHH----HTTCCSEEEECCTTGGGSTTGG-GGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHH
T ss_pred HHH--------HHHHHHHH----HHccCCEEEECCCCEehhhHHh-cCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHH
Confidence 000 00011111 112333333323 222222122 35789999999999999997762 2 11 34
Q ss_pred HHHHHHHhcCCccccc-ccCCEEEeCC-CCHHHHHHHHHHHHH
Q 026952 153 DARNRINAQMPLDIKR-NNADIVINNT-GTLDDLNEQVRKVLF 193 (230)
Q Consensus 153 ~~~~r~~~~~~~~~~~-~~ad~iI~n~-~~~~~v~~~i~~~l~ 193 (230)
.+...+... .+.+ ..++++||++ .+++++.++|.+.++
T Consensus 126 ~i~~~~~~r---~~~y~~~~~~~Idt~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 126 KAKKLYNER---LSKYEQKANFILNIENKNIDELLSEIKKVIK 165 (175)
T ss_dssp HHHHHHHHH---HHHHHHHCSEEEECTTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHH---HHHHHhcCCEEEECCCCCHHHHHHHHHHHHH
Confidence 444443322 1222 3478999998 599999999988764
No 57
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.55 E-value=9e-15 Score=115.61 Aligned_cols=170 Identities=16% Similarity=0.144 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|+|+|++||||||+++.|+ ++|...++++.+ ++ ...+.+....+.+.+. .++.+++......+. ....
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~-~~-~~~~~~~g~~i~~~~~-----~~~~~~~~~~~~~~~--~~~~ 81 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHL-YF-PNRETGIGQIISKYLK-----MENSMSNETIHLLFS--ANRW 81 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ES-SCTTSHHHHHHHHHHT-----TSSCCCHHHHHHHHH--HHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE-ec-CCCCCcHHHHHHHHHh-----cCCCCCHHHHHHHHH--HHHH
Confidence 489999999999999999999 455444444322 21 1112334444444442 123344433322211 0000
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeee----cc-------ccc-------cccCCeEEEEEcCHHHHHHH
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLL----FE-------AKM-------DKWTKPIVVVWVDPDTQLQR 142 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~----~e-------~~~-------~~~~d~vi~l~~~~~~~~~R 142 (230)
++++ .++ .....+ ..+++|.... +. ..+ ...+|.+||+++|++++.+|
T Consensus 82 ~~~~-~i~------------~~l~~~-~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~R 147 (212)
T 2wwf_A 82 EHMN-EIK------------SLLLKG-IWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNR 147 (212)
T ss_dssp TTHH-HHH------------HHHHHT-CEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGS
T ss_pred HHHH-HHH------------HHHhCC-CEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHh
Confidence 0000 011 111123 4567774210 00 001 12468999999999999999
Q ss_pred HHhh-CCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHh
Q 026952 143 LMAR-DRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEI 195 (230)
Q Consensus 143 l~~R-~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~ 195 (230)
+.+| ++...+++..++..+...... ..++++|||+++++++.++|.+.+..+
T Consensus 148 l~~r~~r~~~~~~~~~~~~~~~~~~~-~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 148 SDYGEEIYEKVETQKKIYETYKHFAH-EDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp TTTTSSTTCSHHHHHHHHHHGGGGTT-CTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred hccCcccccHHHHHHHHHHHHHHHhc-cCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 8765 233345666666543322111 346789999999999999999988655
No 58
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.55 E-value=3.3e-15 Score=114.50 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|+|+|++||||||+++.|+ .+|+.+++.|.+.+..... ....+.+.+|...+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~~---~i~~i~~~~g~~~~---------------------- 59 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA---DVGWVFDLEGEEGF---------------------- 59 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTS---CHHHHHHHHHHHHH----------------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhCc---CHHHHHHHHhHHHH----------------------
Confidence 479999999999999999999 5899999999876543211 11112221111100
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEE--eeeeccccc--cccCCeEEEEEcCHHHHHHHHHhhCC---C----
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLD--VPLLFEAKM--DKWTKPIVVVWVDPDTQLQRLMARDR---T---- 149 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie--~~~~~e~~~--~~~~d~vi~l~~~~~~~~~Rl~~R~~---~---- 149 (230)
..+ ...+...+ ....++++.. +..+.+... .+.++.++|+++|++++.+|+.+|.+ .
T Consensus 60 ------~~~--~~~~l~~l----~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~ 127 (173)
T 1kag_A 60 ------RDR--EEKVINEL----TEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVET 127 (173)
T ss_dssp ------HHH--HHHHHHHH----HTSSSEEEECCTTGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSC
T ss_pred ------HHH--HHHHHHHH----HhCCCeEEECCCeEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCC
Confidence 000 00001111 1223444432 222222111 13357899999999999999988732 1
Q ss_pred C-HHHHHHHHHhcCCcccccccCCEEEeCC-CCHHHHHHHHHHHHH
Q 026952 150 S-EEDARNRINAQMPLDIKRNNADIVINNT-GTLDDLNEQVRKVLF 193 (230)
Q Consensus 150 ~-~~~~~~r~~~~~~~~~~~~~ad~iI~n~-~~~~~v~~~i~~~l~ 193 (230)
. .+.+...+.... ..+...+|++|||+ .+++++.++|.+.++
T Consensus 128 ~~~~~~~~~~~~r~--~~~~~~a~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 128 PPREVLEALANERN--PLYEEIADVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp CCHHHHHHHHHHHH--HHHHHHCSEEC-----CHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHH--HHHHhhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 1 333333332211 11234589999998 699999999988764
No 59
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.55 E-value=1.8e-14 Score=113.71 Aligned_cols=68 Identities=21% Similarity=0.236 Sum_probs=54.4
Q ss_pred eEEEEE-cCHHHHHHHHHhhCCCCHHHHHHHHHhcC-Cccc-ccccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 128 PIVVVW-VDPDTQLQRLMARDRTSEEDARNRINAQM-PLDI-KRNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 128 ~vi~l~-~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~-~~~~-~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
.+||++ +|++++.+|+.+|+..+++.+.+|+.... +..+ ....+|++|+|+ +++++.++|.++++...
T Consensus 128 ~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~~~d~vi~n~-~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 128 IYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNYFIVND-DLARTYAELREYLLGSY 198 (204)
T ss_dssp EEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHTCSEEEECS-SHHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhccCcEEEECc-CHHHHHHHHHHHHHHHh
Confidence 689998 89999999999997678888888876542 2222 456789999988 99999999999987644
No 60
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.54 E-value=1.5e-13 Score=112.59 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=91.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh----CCCcEE--ehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhc
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKA----NDVPVV--DADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVF 74 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~----~g~~~i--~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (230)
|++|+|+|+|||||||+|+.|++ .|+.++ +.|.+...+.. +.+.+ ..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-----------------~~~~~----e~------ 56 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-----------------WKEKY----EE------ 56 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-----------------CCGGG----HH------
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-----------------hhHHH----HH------
Confidence 68999999999999999999993 788877 77766432110 11000 00
Q ss_pred CChHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecccc---ccc------cCCeEEEEEcCHHHHHHHHHh
Q 026952 75 SDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAK---MDK------WTKPIVVVWVDPDTQLQRLMA 145 (230)
Q Consensus 75 ~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~---~~~------~~d~vi~l~~~~~~~~~Rl~~ 145 (230)
...... . ..+.... .. ..+|+|+....... +.. ..+.+||+++|++++.+|+.+
T Consensus 57 -------~~~~~~----~----~~i~~~l-~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~ 119 (260)
T 3a4m_A 57 -------FIKKST----Y----RLIDSAL-KN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIE 119 (260)
T ss_dssp -------HHHHHH----H----HHHHHHH-TT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHH
T ss_pred -------HHHHHH----H----HHHHHHh-hC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHh
Confidence 000000 0 0111111 23 56788864332211 111 136789999999999999999
Q ss_pred hCC-CCHHHHHHHHHhcCCccccc--ccCCEEEeCCC--CHHHHHHHHHHHHHHhh
Q 026952 146 RDR-TSEEDARNRINAQMPLDIKR--NNADIVINNTG--TLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 146 R~~-~~~~~~~~r~~~~~~~~~~~--~~ad~iI~n~~--~~~~v~~~i~~~l~~~~ 196 (230)
|+. .+.+.+....+......+.+ ..++++||+++ +++++.+.|.+.+..-.
T Consensus 120 R~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~~ 175 (260)
T 3a4m_A 120 RGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIP 175 (260)
T ss_dssp TTCSSCHHHHHHHHHHCCCTTSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSCC
T ss_pred CCCCCCHHHHHHHHHHhcCccccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCCC
Confidence 863 45555555444433222222 45789999987 78888888877765433
No 61
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.53 E-value=9.5e-14 Score=112.66 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=67.7
Q ss_pred CCcEEEEEeeeec-cccccccCCeEEEEEcCHHHHHHHHHhhC---CCCHHHHHHHHHhcC--C----cccccccCCEEE
Q 026952 106 GCKVIVLDVPLLF-EAKMDKWTKPIVVVWVDPDTQLQRLMARD---RTSEEDARNRINAQM--P----LDIKRNNADIVI 175 (230)
Q Consensus 106 ~~~~viie~~~~~-e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~---~~~~~~~~~r~~~~~--~----~~~~~~~ad~iI 175 (230)
+.+++++|++..+ +..+...+|.+|++.++.+.+..|...|+ |.+.+++..++..+. . .++....||++|
T Consensus 133 ~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi 212 (245)
T 2jeo_A 133 PADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVII 212 (245)
T ss_dssp CCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEE
T ss_pred CCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEE
Confidence 3568899987655 44455557999999999998888887776 788888888776432 1 235678899998
Q ss_pred ----eCCCCHHHHHHHHHHHHHHhh
Q 026952 176 ----NNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 176 ----~n~~~~~~v~~~i~~~l~~~~ 196 (230)
+|+.+++++.+++.++++...
T Consensus 213 ~~~~dn~~~~~~l~~~i~~~~~~~~ 237 (245)
T 2jeo_A 213 PRGVDNMVAINLIVQHIQDILNGDI 237 (245)
T ss_dssp ESSTTCHHHHHHHHHHHHHHHHTCC
T ss_pred cCCCCccHHHHHHHHHHHHHHhcch
Confidence 777789999999999887533
No 62
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.52 E-value=3.8e-14 Score=112.57 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=93.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKRQ 81 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (230)
.|+|+|+|||||||+|+.|+ .+|+.++++|++.++....+++....+.+.+... +.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g-----~~~~~~-------------- 62 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAG-----KLVTDE-------------- 62 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHT-----CCCCHH--------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCC-----CcCCHH--------------
Confidence 58999999999999999999 5899999999998875433322222222211100 000000
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee-eecc--ccc---cccCCeEEEEEcCHHHHHHHHHhhC--------
Q 026952 82 LLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP-LLFE--AKM---DKWTKPIVVVWVDPDTQLQRLMARD-------- 147 (230)
Q Consensus 82 ~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~-~~~e--~~~---~~~~d~vi~l~~~~~~~~~Rl~~R~-------- 147 (230)
...+.+. ..+... .....+|+|+. .... ..+ ...+|.++++++|++++.+|+.+|.
T Consensus 63 ----~~~~~i~----~~l~~~--~~~~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~ 132 (214)
T 1e4v_A 63 ----LVIALVK----ERIAQE--DCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRV 132 (214)
T ss_dssp ----HHHHHHH----HHHTSG--GGGGCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEE
T ss_pred ----HHHHHHH----HHHhcc--ccCCCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCc
Confidence 0111111 111100 01123677752 1110 011 1236899999999999999998763
Q ss_pred -------------------------CCCHHHHHHHHHhcCC----cccccc-------cCCEEEeCCCCHHHHHHHHHHH
Q 026952 148 -------------------------RTSEEDARNRINAQMP----LDIKRN-------NADIVINNTGTLDDLNEQVRKV 191 (230)
Q Consensus 148 -------------------------~~~~~~~~~r~~~~~~----~~~~~~-------~ad~iI~n~~~~~~v~~~i~~~ 191 (230)
..+.+.+.+|++.+.. ....+. ...+.||++++++++.++|.+.
T Consensus 133 ~~~~~~pp~~~~~~~~~~~~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~ 212 (214)
T 1e4v_A 133 YHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKI 212 (214)
T ss_dssp EETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHH
T ss_pred ccccCCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHH
Confidence 1345677777754321 111222 1234689999999999999876
Q ss_pred H
Q 026952 192 L 192 (230)
Q Consensus 192 l 192 (230)
+
T Consensus 213 l 213 (214)
T 1e4v_A 213 L 213 (214)
T ss_dssp H
T ss_pred h
Confidence 5
No 63
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.51 E-value=1.6e-13 Score=109.90 Aligned_cols=182 Identities=20% Similarity=0.133 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|+|+|++||||||+++.|+ ++|+++++.|.+.....+.+-+ ....+.++.... ...+.. +....+......
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~--~~~~~~~~E~~~--~~~~~~--~~~~~~~~~~~~ 88 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVG--EQFFRLADEKAG--NNLLYR--LGGGRKIDLHSK 88 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC---------------------------------------
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCC--HHHHHHHHhhcc--ccHHHH--Hhcccccccccc
Confidence 589999999999999999999 6899999966554433332211 111222211100 000000 000000000000
Q ss_pred HHH--HhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe---eeec---cccccccCCeEEEEEcCHHHHHHHHHhhCCCCHH
Q 026952 81 QLL--NGLLAPYISLGIFMEVLKLWIKGCKVIVLDV---PLLF---EAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEE 152 (230)
Q Consensus 81 ~~l--~~~~~p~v~~~~~~~~~~~~~~~~~~viie~---~~~~---e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~ 152 (230)
... +......+.....+.+.+.. ..+++ |+.+ ..+. ... ...++|||++|++++.+|+.+|.+.+.+
T Consensus 89 ~~~~~~~~~~~~~f~~~~~~i~~la-~~~~~-Vi~Grggg~vl~~~~~~---~~~~~VfL~A~~e~r~~Ri~~~~~~~~~ 163 (223)
T 3hdt_A 89 PSPNDKLTSPENLFKFQSEVMRELA-ESEPC-IFVGRAAGYVLDQDEDI---ERLIRIFVYTDKVKKVQRVMEVDCIDEE 163 (223)
T ss_dssp ---------HHHHHHHHHHHHHHHH-HHSCE-EEESTTHHHHHHHCTTC---CEEEEEEEECCHHHHHHHHHHHHTCCHH
T ss_pred cccccccccHHHHHHHHHHHHHHHH-hCCCE-EEEeCCcchhcccccCC---CCeEEEEEECCHHHHHHHHHHhcCCCHH
Confidence 000 00011111111111122222 22344 4442 2333 221 1247899999999999999988888877
Q ss_pred HHHHHHHhcC-Cccc-----------ccccCCEEEeCCC-CHHHHHHHHHHHHHH
Q 026952 153 DARNRINAQM-PLDI-----------KRNNADIVINNTG-TLDDLNEQVRKVLFE 194 (230)
Q Consensus 153 ~~~~r~~~~~-~~~~-----------~~~~ad~iI~n~~-~~~~v~~~i~~~l~~ 194 (230)
++..++.+.. ...+ ....+|++||++. +++++.+.|.+.++.
T Consensus 164 ~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 164 RAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRL 218 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 7665554321 1111 2246899999987 899999999888763
No 64
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.51 E-value=2.2e-13 Score=105.95 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARD 37 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~ 37 (230)
++|+|+|+|||||||+++.|+ .+|+.+++.|.+...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~ 42 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEV 42 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHH
Confidence 589999999999999999999 589999999887543
No 65
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.50 E-value=1.1e-13 Score=109.41 Aligned_cols=73 Identities=8% Similarity=0.041 Sum_probs=45.1
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhC-CCCHHHHHHHHHhcCC-cccccccCCEEEeCCCCHHHHHHHHHHHHHHhhC
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARD-RTSEEDARNRINAQMP-LDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 197 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~-~~~~~~~~~r~~~~~~-~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~ 197 (230)
.+|.+||+++|++++.+|+..|. .....++..++..... .........++|||+++++++.++|.+++..+..
T Consensus 129 ~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~ 203 (215)
T 1nn5_A 129 KPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIA 203 (215)
T ss_dssp CCSEEEEEECCHHHHHHC-----CTTCSHHHHHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHhccCccccchHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 36899999999999999997442 2222344444433221 1111112236899999999999999998876543
No 66
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=99.50 E-value=4.8e-14 Score=114.04 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=52.2
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCC----CCHHHHHHHHHhcCCcc-cccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDR----TSEEDARNRINAQMPLD-IKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~----~~~~~~~~r~~~~~~~~-~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
.+|.+|..+++.++.++|+++|++ .+.+.+ .++..+.+.. .....||++|+|+++++++.+++.++++.
T Consensus 167 ~~d~VvVvdv~~~~qieRl~~rg~~~v~i~~~~~-~~i~~Q~se~~~k~~~AD~VI~N~gsle~l~~qV~~ll~~ 240 (241)
T 1dek_A 167 GYDYYIVPDTRQDHEMDAARAMGATVIHVVRPGQ-KSNDTHITEAGLPIRDGDLVITNDGSLEELFSKIKNTLKV 240 (241)
T ss_dssp SCSEEEECCCCSHHHHHHHHHTTCEEEEEECTTC-CCSCCSGGGSCCCCCTTCEEEECCSCHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCcHHHHHHHHHCCCceEEEECccc-chhhcCCCcccccccCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 468899999999999999999954 222211 2344444545 36678999999999999999999998753
No 67
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.50 E-value=5.9e-13 Score=105.89 Aligned_cols=172 Identities=16% Similarity=0.174 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh----CCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCCh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA----NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS 77 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~----~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (230)
++|+|.|++||||||+++.|++ .|+.++.+... .+++....+.+.+... ....++.....-.++ .
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p------~~~~~g~~i~~~l~~~---~~~~~~~~~~~llf~--a 75 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREP------GGTPLAERIRELLLAP---SDEPMAADTELLLMF--A 75 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESS------CSSHHHHHHHHHHHSC---CSSCCCHHHHHHHHH--H
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCC------CCCHHHHHHHHHHhcC---CCCCCCHHHHHHHHH--H
Confidence 5899999999999999999982 57777655322 1334444454443211 011234433322221 2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee----eeccc-------c-------c---cccCCeEEEEEcCH
Q 026952 78 SKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP----LLFEA-------K-------M---DKWTKPIVVVWVDP 136 (230)
Q Consensus 78 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~----~~~e~-------~-------~---~~~~d~vi~l~~~~ 136 (230)
++.+++...+.|.+ ..+.+||.|-. ..+.. . + ...+|++|||++|+
T Consensus 76 ~R~~~~~~~i~p~l-------------~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~ 142 (213)
T 4edh_A 76 ARAQHLAGVIRPAL-------------ARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPV 142 (213)
T ss_dssp HHHHHHHHTHHHHH-------------HTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCH
T ss_pred HHHHHHHHHHHHHH-------------HCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCH
Confidence 23333334443333 23456777721 11110 0 0 13469999999999
Q ss_pred HHHHHHHHhhCC--CCH---HHHHHHHHhcC-CcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhC
Q 026952 137 DTQLQRLMARDR--TSE---EDARNRINAQM-PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 197 (230)
Q Consensus 137 ~~~~~Rl~~R~~--~~~---~~~~~r~~~~~-~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~ 197 (230)
++..+|+.+|++ ..+ .++..+..... ..........++||++++++++.++|.+.+...+.
T Consensus 143 e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~ 209 (213)
T 4edh_A 143 EIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLE 209 (213)
T ss_dssp HHHHHHHCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcCcccccHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 999999998853 111 23444443221 22211222346899999999999999998887653
No 68
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.50 E-value=6.7e-13 Score=104.56 Aligned_cols=69 Identities=25% Similarity=0.304 Sum_probs=47.9
Q ss_pred CCeEEEEEcCHHHHHHHHH-hhCC-CC-------------H---HHHHHHHHhcCC-cccccccCCEEEeCCCCHHHHHH
Q 026952 126 TKPIVVVWVDPDTQLQRLM-ARDR-TS-------------E---EDARNRINAQMP-LDIKRNNADIVINNTGTLDDLNE 186 (230)
Q Consensus 126 ~d~vi~l~~~~~~~~~Rl~-~R~~-~~-------------~---~~~~~r~~~~~~-~~~~~~~ad~iI~n~~~~~~v~~ 186 (230)
.|.+||+++|++++.+|+. +|+. .. . +.+..++..... .... ...++||++++++++.+
T Consensus 122 ~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~~~--~~~~~Id~~~~~e~v~~ 199 (213)
T 2plr_A 122 PDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPEEGFLKYQGLITEVYDKLVKD--ENFIVIDGTKTPKEIQI 199 (213)
T ss_dssp CSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTTSCHHHHHHHHHHHHHHHHHHHTTT--TTCEEEETTSCHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHhcccccccccccccccccccchhhhHHHHHHHHHHHHHHHHhh--CCEEEEECCCCHHHHHH
Confidence 6889999999999999998 7752 11 1 234444332211 1111 15689999999999999
Q ss_pred HHHHHHHHhh
Q 026952 187 QVRKVLFEIK 196 (230)
Q Consensus 187 ~i~~~l~~~~ 196 (230)
+|.+.+..++
T Consensus 200 ~I~~~l~~~~ 209 (213)
T 2plr_A 200 QIRKFVGELI 209 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 69
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.50 E-value=1e-13 Score=112.88 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
..|+|+|++||||||+++.|+ .+|+.++++|.+.+.... +.....+.+.+|...++
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~--g~~i~~i~~~~ge~~fr--------------------- 105 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK--GTSVAEIFEHFGESVFR--------------------- 105 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST--TSCHHHHHHHHCHHHHH---------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc--CccHHHHHHHhCcHHHH---------------------
Confidence 379999999999999999999 599999999998776541 12233333333221110
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee--eeccccc--cccCCeEEEEEcCHHHHHHHHHhhC----C-C-C
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP--LLFEAKM--DKWTKPIVVVWVDPDTQLQRLMARD----R-T-S 150 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~--~~~e~~~--~~~~d~vi~l~~~~~~~~~Rl~~R~----~-~-~ 150 (230)
.++ ..+. ........+.++..+. .+....+ .. .+.+|||++|++++.+|+.+|. . . .
T Consensus 106 -~~e--------~~~l---~~l~~~~~~~Via~GgG~v~~~~~~~~l~-~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~ 172 (250)
T 3nwj_A 106 -EKE--------TEAL---KKLSLMYHQVVVSTGGGAVIRPINWKYMH-KGISIWLDVPLEALAHRIAAVGTGSRPLLHD 172 (250)
T ss_dssp -HHH--------HHHH---HHHHHHCSSEEEECCGGGGGSHHHHHHHT-TSEEEEEECCHHHHHHHHHC-----------
T ss_pred -HHH--------HHHH---HHHHhhcCCcEEecCCCeecCHHHHHHHh-CCcEEEEECCHHHHHHHHhhcCCCCCCcccC
Confidence 000 0000 1111121345555542 2222111 11 3789999999999999998531 1 1 1
Q ss_pred ------HHHHHHHHHhcC-CcccccccCCEEE------------eCCC-CHHHHHHHHHHHHHHhhCC
Q 026952 151 ------EEDARNRINAQM-PLDIKRNNADIVI------------NNTG-TLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 151 ------~~~~~~r~~~~~-~~~~~~~~ad~iI------------~n~~-~~~~v~~~i~~~l~~~~~~ 198 (230)
.+....++...+ ...+.+..+|.+| |+++ +++++.++|.+.++.....
T Consensus 173 ~~~~d~~~~~~~~l~~l~~eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~ 240 (250)
T 3nwj_A 173 DESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEK 240 (250)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHT
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 011122232221 2334556699888 6665 8999999999999876544
No 70
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.49 E-value=5.8e-13 Score=103.31 Aligned_cols=162 Identities=19% Similarity=0.140 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCC-----CcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhc
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-AND-----VPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVF 74 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g-----~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (230)
|++|+|+|+|||||||+|+.|+ +++ +.+++.|++..+..... .++ . ....+...
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~-------------~~~--~---~~~~~~~~-- 60 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKL-------------GYA--K---DRDEMRKL-- 60 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTT-------------TSC--S---SHHHHTTS--
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhc-------------ccc--c---chhhhhcC--
Confidence 8999999999999999999999 444 66777776654322100 000 0 00000000
Q ss_pred CChHH-HHHHHhhhhHHHHHHHHHHHHHHH-hcCCcEEEEEee--eecc-c-------c-cc-ccCCeEEEEEcCHHHHH
Q 026952 75 SDSSK-RQLLNGLLAPYISLGIFMEVLKLW-IKGCKVIVLDVP--LLFE-A-------K-MD-KWTKPIVVVWVDPDTQL 140 (230)
Q Consensus 75 ~~~~~-~~~l~~~~~p~v~~~~~~~~~~~~-~~~~~~viie~~--~~~e-~-------~-~~-~~~d~vi~l~~~~~~~~ 140 (230)
.+.. ...+. .....+.... ...+..+|+|+. .... . . +. ...|.++|+++|++++.
T Consensus 61 -~~~~~~~~~~---------~~~~~i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~ 130 (194)
T 1nks_A 61 -SVEKQKKLQI---------DAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIIL 130 (194)
T ss_dssp -CHHHHHHHHH---------HHHHHHHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHH
T ss_pred -CHHHHHHHHH---------HHHHHHHHHhhccCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHH
Confidence 0000 00000 0001111111 023456788863 1111 0 0 11 12588999999999988
Q ss_pred HH-HHh--hCC---CCHHHHH--HHHHhcC-CcccccccCC-EEE-eCCCCHHHHHHHHHHHH
Q 026952 141 QR-LMA--RDR---TSEEDAR--NRINAQM-PLDIKRNNAD-IVI-NNTGTLDDLNEQVRKVL 192 (230)
Q Consensus 141 ~R-l~~--R~~---~~~~~~~--~r~~~~~-~~~~~~~~ad-~iI-~n~~~~~~v~~~i~~~l 192 (230)
+| +.+ |+. .+.+.+. .++.... .....+..++ ++| |++++++++.++|.+++
T Consensus 131 ~rr~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 131 SRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHhhcccCCCCccCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 66 666 643 2344322 2222211 1111121234 578 88889999999998765
No 71
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.49 E-value=1e-13 Score=108.84 Aligned_cols=167 Identities=8% Similarity=0.007 Sum_probs=91.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-C-CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-N-DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~-g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
++|+|+|++||||||+++.|++ + |+.+++++...+ +......+.+.|.. ++.+++... ..+|. ...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~-----~~~~g~~i~~~~~~-----~~~~~~~~~-~~l~~-~~r 72 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQR-----STVTGKMIDDYLTR-----KKTYNDHIV-NLLFC-ANR 72 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCT-----TSHHHHHHHHHHTS-----SCCCCHHHH-HHHHH-HHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCC-----CCcHHHHHHHHHhc-----CCCCCHHHH-HHHHH-HHH
Confidence 5799999999999999999995 5 688887654321 12233445555532 122333322 11110 000
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeee----------------eccccc-cccCCeEEEEEcCHHHHHHH
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPL----------------LFEAKM-DKWTKPIVVVWVDPDTQLQR 142 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~----------------~~e~~~-~~~~d~vi~l~~~~~~~~~R 142 (230)
...+ ..+.... ..+..+++|... +.+... ...+|.+||+++|++++.+
T Consensus 73 ~~~~-------------~~i~~~l-~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~- 137 (204)
T 2v54_A 73 WEFA-------------SFIQEQL-EQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR- 137 (204)
T ss_dssp HTTH-------------HHHHHHH-HTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT-
T ss_pred HHHH-------------HHHHHHH-HCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh-
Confidence 0000 0111111 233467777311 111001 1246899999999999877
Q ss_pred HHhhCCCCH--HHHHHHHHhcCC-cccccccCCEEEeCCCCHHHHHHHHHHHHHHhhC
Q 026952 143 LMARDRTSE--EDARNRINAQMP-LDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 197 (230)
Q Consensus 143 l~~R~~~~~--~~~~~r~~~~~~-~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~ 197 (230)
+|+.... .++..++..... .........++||++++++++.++|.+.+...+.
T Consensus 138 --~R~~d~~e~~~~~~rl~~~y~~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~ 193 (204)
T 2v54_A 138 --NVGEEIYEDVTFQQKVLQEYKKMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAIH 193 (204)
T ss_dssp --CCSSSTTCCSHHHHHHHHHHHHHHTTCSSCEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred --hcCcccccHHHHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 4532212 255555543221 1111112236899999999999999998876543
No 72
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.49 E-value=6.3e-14 Score=108.19 Aligned_cols=150 Identities=19% Similarity=0.277 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSKR 80 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (230)
++|+|+|+|||||||+++.|+ .+|+.++++|++.+.... ...++...+ ..++. .+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~---------~~~~~~~~~------------~~~~~-~~~- 68 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQL---------YDGYDEEYD------------CPILD-EDR- 68 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTC---------EEEEETTTT------------EEEEC-HHH-
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcch---------hhhhhhhhc------------CccCC-hHH-
Confidence 469999999999999999999 679999999988765310 000111000 00000 000
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeee--eccccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHH
Q 026952 81 QLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPL--LFEAKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRI 158 (230)
Q Consensus 81 ~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~--~~e~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~ 158 (230)
+.. .+......++ . +++... .+.. ..+|.+||+++|++++.+|+.+|+ .+........
T Consensus 69 ----------~~~----~~~~~~~~g~-~-vv~~~~~~~~~~---~~~~~vi~L~~~~e~l~~R~~~r~-~~~~~~~~~~ 128 (180)
T 3iij_A 69 ----------VVD----ELDNQMREGG-V-IVDYHGCDFFPE---RWFHIVFVLRTDTNVLYERLETRG-YNEKKLTDNI 128 (180)
T ss_dssp ----------HHH----HHHHHHHHCC-E-EEECSCCTTSCG---GGCSEEEEEECCHHHHHHHHHHTT-CCHHHHHHHH
T ss_pred ----------HHH----HHHHHHhcCC-E-EEEechhhhcch---hcCCEEEEEECCHHHHHHHHHHcC-CCHHHHHHHH
Confidence 000 1111112343 3 344321 1211 236899999999999999999984 3333332221
Q ss_pred H-hcC-----CcccccccCCEEEeCC-CCHHHHHHHHHHHHHHh
Q 026952 159 N-AQM-----PLDIKRNNADIVINNT-GTLDDLNEQVRKVLFEI 195 (230)
Q Consensus 159 ~-~~~-----~~~~~~~~ad~iI~n~-~~~~~v~~~i~~~l~~~ 195 (230)
. ..+ ...+.+. ++++++++ .+++++.+.+.+++..+
T Consensus 129 ~~~~~~~~~~~~~~~y~-~~~~i~~~~~~~~ev~~~v~~i~~~l 171 (180)
T 3iij_A 129 QCEIFQVLYEEATASYK-EEIVHQLPSNKPEELENNVDQILKWI 171 (180)
T ss_dssp HHHHTTHHHHHHHHHSC-GGGEEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CCeEEEcCCCCHHHHHHHHHHHHHHH
Confidence 1 111 1112222 47777654 48899976666666554
No 73
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.49 E-value=4.5e-13 Score=104.94 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=51.1
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCCCCHH-----HHHHHHHhcCC-ccccc--ccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDRTSEE-----DARNRINAQMP-LDIKR--NNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~~~~~-----~~~~r~~~~~~-~~~~~--~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
.+|.+||+++|++++.+|+.+|+ .+.+ +...++..... ..+.+ ..++++||++++++++.++|.+.+..+.
T Consensus 124 ~~d~vi~L~~~~e~~~~Rl~~R~-r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~~~ 202 (205)
T 2jaq_A 124 SFDIVIYLRVSTKTAISRIKKRG-RSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSIK 202 (205)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHT-CHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEEeCCHHHHHHHHHHcC-ChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHHhc
Confidence 46899999999999999999884 3322 33344443322 22233 4578999999999999999999887654
Q ss_pred C
Q 026952 197 R 197 (230)
Q Consensus 197 ~ 197 (230)
+
T Consensus 203 ~ 203 (205)
T 2jaq_A 203 N 203 (205)
T ss_dssp -
T ss_pred C
Confidence 3
No 74
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.48 E-value=8.5e-15 Score=123.21 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=93.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh-C-------CCcEEehhhhhHHhhcCCchHHHHHHHHhCC-cccCCCCccCHHHHHh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKA-N-------DVPVVDADIIARDVLKKGTGGWKKVVAAFGE-DILLPNGEVDRSKLGQ 71 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~-~-------g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~ 71 (230)
+.+|+|+|++||||||+++.|.. . ...+++.|.++..... + +..+. ..+...+..+...+..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~--------l-~~~~~~~~~g~P~~~D~~~l~~ 162 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAK--------L-EKQGLMKRKGFPESYDMPSLLR 162 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHH--------H-HHTTCGGGTTSGGGBCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhh--------h-hhHHHHhhccCcccccHHHHHH
Confidence 35899999999999999999982 1 2457889987532110 1 11110 0011122233333322
Q ss_pred hhcCChHHHHHHH-hhhhHHHHHHHHHHHH--HHHhcCCcEEEEEeeeecccc-----------ccccCCeEEEEEcCHH
Q 026952 72 IVFSDSSKRQLLN-GLLAPYISLGIFMEVL--KLWIKGCKVIVLDVPLLFEAK-----------MDKWTKPIVVVWVDPD 137 (230)
Q Consensus 72 ~~~~~~~~~~~l~-~~~~p~v~~~~~~~~~--~~~~~~~~~viie~~~~~e~~-----------~~~~~d~vi~l~~~~~ 137 (230)
.+. .+.... .+..|.+......... .....+.+++|+||..++... +...+|.+||+++|.+
T Consensus 163 ~L~----~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d 238 (321)
T 3tqc_A 163 VLN----AIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQ 238 (321)
T ss_dssp HHH----HHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHH
T ss_pred HHH----hhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHH
Confidence 210 000001 1112221111000000 000124578999998766543 5667899999999999
Q ss_pred HHHHHHHhhC-------------------CCCHHHHHHHHHhcCC----------cccccccCCEEEeCC
Q 026952 138 TQLQRLMARD-------------------RTSEEDARNRINAQMP----------LDIKRNNADIVINNT 178 (230)
Q Consensus 138 ~~~~Rl~~R~-------------------~~~~~~~~~r~~~~~~----------~~~~~~~ad~iI~n~ 178 (230)
++.+|+.+|+ +.+.+++..+...+|. ..+.+..||+|+..+
T Consensus 239 ~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g 308 (321)
T 3tqc_A 239 VIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKA 308 (321)
T ss_dssp HHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEEC
T ss_pred HHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecC
Confidence 9999999986 4567777666554331 345678899988644
No 75
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.48 E-value=1.9e-12 Score=102.97 Aligned_cols=175 Identities=17% Similarity=0.195 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh----CCC-cEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCC
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA----NDV-PVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSD 76 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~----~g~-~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 76 (230)
++|+|.|++||||||+++.|++ .|+ .++.+... .+++....+.+.+....-.....++.....-.++
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep------~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~-- 75 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREP------GGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY-- 75 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS------CSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCC------CCCHHHHHHHHHHhcccccccccCChHHHHHHHH--
Confidence 4899999999999999999982 566 44433221 2334445554443210000012234333222221
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEe----eeeccc-------cc----------cccCCeEEEEEcC
Q 026952 77 SSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDV----PLLFEA-------KM----------DKWTKPIVVVWVD 135 (230)
Q Consensus 77 ~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~----~~~~e~-------~~----------~~~~d~vi~l~~~ 135 (230)
..+.+++...+.|.+. .+.+||.|- ...+.. .+ ...+|+++||++|
T Consensus 76 A~R~~~~~~~i~paL~-------------~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~ 142 (213)
T 4tmk_A 76 AARVQLVETVIKPALA-------------NGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVT 142 (213)
T ss_dssp HHHHHHHHHTHHHHHH-------------TTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHHHH-------------CCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCC
Confidence 2233444444444332 345778882 111111 00 1246999999999
Q ss_pred HHHHHHHHHhhCCC---C--HHHHHHHHHhcC-CcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCC
Q 026952 136 PDTQLQRLMARDRT---S--EEDARNRINAQM-PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 136 ~~~~~~Rl~~R~~~---~--~~~~~~r~~~~~-~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~ 198 (230)
+++..+|+.+|++. . ..++.++..... ...... ..-.+||++++++++.++|.+.+..++..
T Consensus 143 ~e~~~~Ri~~R~~~dr~E~~~~~f~~rv~~~y~~la~~~-~~~~vIDa~~s~eeV~~~I~~~l~~~l~~ 210 (213)
T 4tmk_A 143 PEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQD-KSIHTIDATQPLEAVMDAIRTTVTHWVKE 210 (213)
T ss_dssp HHHHHHHHHHHSSCCTTTTSCHHHHHHHHHHHHHHHHTC-TTEEEEETTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHC-CcEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999998541 1 123444443221 111111 12357999999999999999999876643
No 76
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.47 E-value=6.6e-13 Score=102.03 Aligned_cols=161 Identities=19% Similarity=0.111 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEE--ehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVV--DADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSS 78 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i--~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (230)
++|+|+|+|||||||+++.|+ +++..++ +.|.+......... . +.-+..+ .+.+. ......
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~---~---~~~~~~~-~~~~~---------~~~~~~ 67 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQ---S---AEGGIEF-DADGG---------VSIGPE 67 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGG---T---STTSEEE-CTTSC---------EEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhc---c---chhhccc-cCCCc---------cccchh
Confidence 589999999999999999999 5665544 57877543221000 0 0000000 00000 000011
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecc----cccc---ccCC-eEEEEEcCHHHHHHHHHhhCCCC
Q 026952 79 KRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFE----AKMD---KWTK-PIVVVWVDPDTQLQRLMARDRTS 150 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e----~~~~---~~~d-~vi~l~~~~~~~~~Rl~~R~~~~ 150 (230)
.... ...+...+.... ..+..+|+++..+.. ..+. .... ..||+++|++++.+|+.+|...+
T Consensus 68 ~~~~---------~~~~~~~~~~~~-~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~~~ 137 (178)
T 1qhx_A 68 FRAL---------EGAWAEGVVAMA-RAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRV 137 (178)
T ss_dssp HHHH---------HHHHHHHHHHHH-HTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSC
T ss_pred HHHH---------HHHHHHHHHHHH-hcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCCcc
Confidence 1000 011111111111 233356788754321 1111 1123 46889999999999999886543
Q ss_pred HHHHHHHHHhcCCcccccccCCEEEeCCC-CHHHHHHHHHHHH
Q 026952 151 EEDARNRINAQMPLDIKRNNADIVINNTG-TLDDLNEQVRKVL 192 (230)
Q Consensus 151 ~~~~~~r~~~~~~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l 192 (230)
..... .+......+..+|++||+++ +++++.++|.+.+
T Consensus 138 ~~~~~----~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 138 AGMAA----KQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp TTHHH----HHTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred cchhh----hhchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence 33211 11221122345899999987 8888888876543
No 77
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.47 E-value=2.4e-12 Score=101.75 Aligned_cols=171 Identities=16% Similarity=0.207 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh---CCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA---NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSS 78 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~---~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (230)
+.|+|.|+.||||||+++.|++ .|..++.+... .+++....+.+.+.. ...++.....-.+. .+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP------~~t~~g~~ir~~l~~-----~~~~~~~~~~lLf~--a~ 69 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREP------GGVPTGEEIRKIVLE-----GNDMDIRTEAMLFA--AS 69 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESS------TTCHHHHHHHHHHHS-----SCCCCHHHHHHHHH--HH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCC------CCChHHHHHHHHHhc-----ccCCCHHHHHHHHH--HH
Confidence 4799999999999999999983 46666655322 123344444444321 11223222211111 12
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee----eeccc---c--------c------cccCCeEEEEEcCHH
Q 026952 79 KRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP----LLFEA---K--------M------DKWTKPIVVVWVDPD 137 (230)
Q Consensus 79 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~----~~~e~---~--------~------~~~~d~vi~l~~~~~ 137 (230)
+.+++...+.|.+ ..+.+||.|-. ..+.. . + ...+|+++||++|++
T Consensus 70 R~~~~~~~i~p~l-------------~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e 136 (205)
T 4hlc_A 70 RREHLVLKVIPAL-------------KEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAE 136 (205)
T ss_dssp HHHHHHHTHHHHH-------------HTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHH
T ss_pred HHHHHHHHHHHHH-------------HcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHH
Confidence 2222333333322 23456777721 11110 0 0 123699999999999
Q ss_pred HHHHHHHhhCCC----CHH--HHHHHHHhc-CCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCC
Q 026952 138 TQLQRLMARDRT----SEE--DARNRINAQ-MPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 138 ~~~~Rl~~R~~~----~~~--~~~~r~~~~-~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~ 198 (230)
+..+|+.+|++. ..+ ++.+++... ..........-.+||++.+++++.++|.+.+...+++
T Consensus 137 ~~~~Ri~~r~~~~dr~e~~~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~~ 204 (205)
T 4hlc_A 137 VGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK 204 (205)
T ss_dssp HHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCCcccchhccCHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 999999888532 122 233333211 1111111111247899999999999999988876654
No 78
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.47 E-value=2.1e-13 Score=107.10 Aligned_cols=68 Identities=10% Similarity=0.141 Sum_probs=55.5
Q ss_pred eEEEEEc-CHHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 128 PIVVVWV-DPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 128 ~vi~l~~-~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
..||+.+ +++++.+|+.+|++.+.+.+..|++.+.+.......+|++|+|+ +++++.+++.++++...
T Consensus 120 ~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vi~n~-~~~~~~~~l~~~i~~~~ 188 (205)
T 3tr0_A 120 LSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVND-NFDQAVQNLIHIISAER 188 (205)
T ss_dssp EEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTTGGGCSEEEECS-SHHHHHHHHHHHHHHHT
T ss_pred EEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCEEEECC-CHHHHHHHHHHHHHHHH
Confidence 4567766 58999999999988888888888887765555667899999998 99999999999997643
No 79
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.45 E-value=5.2e-12 Score=101.53 Aligned_cols=73 Identities=8% Similarity=0.162 Sum_probs=49.6
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCC----CC--HHHHHHHHHhcC-CcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhC
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDR----TS--EEDARNRINAQM-PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 197 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~----~~--~~~~~~r~~~~~-~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~ 197 (230)
..|.++|+++|++++.+|+.+|++ .. ..++.+++.... ..........++||++++++++.++|.+.+...+.
T Consensus 148 ~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~l~ 227 (229)
T 4eaq_A 148 YPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE 227 (229)
T ss_dssp CCSEEEEEECCHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999842 22 234444443321 12111222235799999999999999999987654
No 80
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.45 E-value=2.4e-12 Score=103.87 Aligned_cols=174 Identities=17% Similarity=0.240 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh----CCCc-EEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCC
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA----NDVP-VVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSD 76 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~----~g~~-~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 76 (230)
++|+|.|++||||||+++.|++ .|+. ++.+... .+++..+.+.+.+..+. ....++.....-.++
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep------~~t~~g~~ir~~l~~~~--~~~~~~~~~e~lLf~-- 97 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP------GGTLLAEKLRALVKEEH--PGEELQDITELLLVY-- 97 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS------CSSHHHHHHHHHHHSCC--TTSCCCHHHHHHHHH--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC------CCCHHHHHHHHHHhhCC--CcccCCHHHHHHHHH--
Confidence 4899999999999999999982 5665 4433211 23444455544441100 011233222111111
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee----eecccc--------------c---cccCCeEEEEEcC
Q 026952 77 SSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP----LLFEAK--------------M---DKWTKPIVVVWVD 135 (230)
Q Consensus 77 ~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~----~~~e~~--------------~---~~~~d~vi~l~~~ 135 (230)
.++.+.+...+.|.+ ..+.+||.|-. ..+... + ...+|++|||++|
T Consensus 98 A~R~~~~~~~I~paL-------------~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~ 164 (236)
T 3lv8_A 98 AARVQLVENVIKPAL-------------ARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDID 164 (236)
T ss_dssp HHHHHHHHHTHHHHH-------------HTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHHH-------------HcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 123333333333333 23457777721 111110 0 1246999999999
Q ss_pred HHHHHHHHHhhCC---CC--HHHHHHHHHhcC-CcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCCC
Q 026952 136 PDTQLQRLMARDR---TS--EEDARNRINAQM-PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRPL 199 (230)
Q Consensus 136 ~~~~~~Rl~~R~~---~~--~~~~~~r~~~~~-~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~~ 199 (230)
+++..+|+.+|++ .. ..++..++.... ........ .++||++++++++.++|.+.+..++..-
T Consensus 165 ~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~la~~~~~-~~vIDa~~sieeV~~~I~~~l~~~l~~~ 233 (236)
T 3lv8_A 165 PKLGLERARGRGELDRIEKMDISFFERARERYLELANSDDS-VVMIDAAQSIEQVTADIRRALQDWLSQV 233 (236)
T ss_dssp HHHHHHC-----CCCTTTTSCHHHHHHHHHHHHHHHHHCTT-EEEEETTSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHHHCCC-EEEEeCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999998853 11 124444544322 22221222 4689999999999999999998877653
No 81
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.45 E-value=1.1e-14 Score=113.46 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=28.2
Q ss_pred CeEEEEEcCH-HHHHHHHHhhCCCCHHHHHHHHHhcCCccccc--ccCCEEEeCCCCHHHHHHHHHHHHH
Q 026952 127 KPIVVVWVDP-DTQLQRLMARDRTSEEDARNRINAQMPLDIKR--NNADIVINNTGTLDDLNEQVRKVLF 193 (230)
Q Consensus 127 d~vi~l~~~~-~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~--~~ad~iI~n~~~~~~v~~~i~~~l~ 193 (230)
..+||+.+|. +++.+|+.+|+..+++.+..|++......... ..+|++|.|+ ++++..+++.+++.
T Consensus 115 ~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~~~~~~~d~vi~nd-~~~~a~~~l~~~i~ 183 (186)
T 3a00_A 115 ARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVND-DLDKAYKELKDFIF 183 (186)
T ss_dssp CEEEEEECSCC---------------------------------CCCCSEEEECS-SHHHHHHHHHHHHT
T ss_pred eEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCcEEEECc-CHHHHHHHHHHHHH
Confidence 3568999976 89999999998788888988887665433223 6789999998 88999999988875
No 82
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.42 E-value=1.9e-12 Score=100.36 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCC-----CcEEehhhhhHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AND-----VPVVDADIIARDV 38 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g-----~~~i~~d~~~~~~ 38 (230)
++|+|+|+|||||||+++.|+ ++| +.+++.|++.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~ 46 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEV 46 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHH
Confidence 489999999999999999999 466 8899998887654
No 83
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.40 E-value=4.4e-14 Score=110.00 Aligned_cols=87 Identities=22% Similarity=0.327 Sum_probs=57.2
Q ss_pred cCCcEEEEEeeeecccccccc---CCeEEEEEcC-HHHHHHHHHhhCCCCHHHHHHHHHhcCC-ccc-ccccCCEEEeCC
Q 026952 105 KGCKVIVLDVPLLFEAKMDKW---TKPIVVVWVD-PDTQLQRLMARDRTSEEDARNRINAQMP-LDI-KRNNADIVINNT 178 (230)
Q Consensus 105 ~~~~~viie~~~~~e~~~~~~---~d~vi~l~~~-~~~~~~Rl~~R~~~~~~~~~~r~~~~~~-~~~-~~~~ad~iI~n~ 178 (230)
+| ..++++...-.-..++.. .-..||+..| .+++.+|+.+|+..+++.+.+|+..... +.. .....|++|.|+
T Consensus 91 ~g-~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~~~~fD~vIvNd 169 (186)
T 1ex7_A 91 SG-KTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVND 169 (186)
T ss_dssp HT-SEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTTTCSSEEEECS
T ss_pred CC-CEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCcEEEECc
Confidence 44 456777543222222221 1245777664 5889999999988899999999875422 211 223579999987
Q ss_pred CCHHHHHHHHHHHHH
Q 026952 179 GTLDDLNEQVRKVLF 193 (230)
Q Consensus 179 ~~~~~v~~~i~~~l~ 193 (230)
+++...+++.+++.
T Consensus 170 -dle~a~~~l~~iI~ 183 (186)
T 1ex7_A 170 -DLDKAYKELKDFIF 183 (186)
T ss_dssp -SHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHH
Confidence 78889998888774
No 84
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=1.2e-13 Score=109.37 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=49.3
Q ss_pred eEEEEEcC-HHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhC
Q 026952 128 PIVVVWVD-PDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKR 197 (230)
Q Consensus 128 ~vi~l~~~-~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~ 197 (230)
.+||+.+| ++++.+|+.+|+..+.+++..|++...........+|++|.|+ +++++.+++.+++.....
T Consensus 122 ~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~~~~~d~vivN~-~~~~~~~~l~~~i~~~~~ 191 (208)
T 3tau_A 122 IFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVND-VVANAVQKIKGIVETEHL 191 (208)
T ss_dssp EEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHHHHGGGSSEEEECS-SHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccCCEEEECc-CHHHHHHHHHHHHHHHHH
Confidence 56788866 7899999999977888999999876654444556789999987 799999999999976543
No 85
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.40 E-value=5.4e-13 Score=102.47 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=74.5
Q ss_pred Ce-EEEEEcCCCCcHHHHHHHHHh--CCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCCh
Q 026952 1 MR-IVGLTGGISSGKSTVSNLFKA--NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDS 77 (230)
Q Consensus 1 m~-iI~I~G~~GSGKTTva~~L~~--~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (230)
|+ +|+|+|+|||||||+|+.|++ .|+.++++|.+....... .. +. .+.++..
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~-~~---------~~-----~~~~~~~---------- 55 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAH-EE---------RD-----EYKYTKK---------- 55 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTS-CC---------GG-----GCCCCHH----------
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCC-Cc---------cc-----hhhhchh----------
Confidence 54 799999999999999999995 788999998775443210 00 00 0001110
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHh--cCCcEEEEEeeeeccc---cccc------cCCeEEEEEcCHHHHHHHHHhh
Q 026952 78 SKRQLLNGLLAPYISLGIFMEVLKLWI--KGCKVIVLDVPLLFEA---KMDK------WTKPIVVVWVDPDTQLQRLMAR 146 (230)
Q Consensus 78 ~~~~~l~~~~~p~v~~~~~~~~~~~~~--~~~~~viie~~~~~e~---~~~~------~~d~vi~l~~~~~~~~~Rl~~R 146 (230)
.... +...+...+..... ..+..+|+|+...... .+.. ....+||+++|++++.+|+.+|
T Consensus 56 -~~~~--------~~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R 126 (181)
T 1ly1_A 56 -KEGI--------VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR 126 (181)
T ss_dssp -HHHH--------HHHHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTC
T ss_pred -hhhH--------HHHHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcc
Confidence 0000 00111111222221 2345678886433211 1111 1126899999999999999998
Q ss_pred C--CCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 147 D--RTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 147 ~--~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
. ..+.+.+..+++..... .....+++|++.+ +++...+...+..
T Consensus 127 ~~~~~~~~~i~~~~~~~~~~---~~~~~~~id~~~~-~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 127 GTKAVPIDVLRSMYKSMREY---LGLPVYNGTPGKP-KAVIFDVDGTLAK 172 (181)
T ss_dssp GGGCCCHHHHHHHHHHHHHH---HTCCCC---------------------
T ss_pred ccCCCCHHHHHHHHHHhhcc---CCCCccccCCCCC-ceeeehhhhhhhc
Confidence 6 35667666666543221 1112356766543 6666666665543
No 86
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.38 E-value=7e-12 Score=98.51 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=45.4
Q ss_pred CCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhcC-CcccccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 126 TKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQM-PLDIKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 126 ~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~-~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
.|+++|+++|+++..+|..+|+.....+...+..... .........-.+||++.+++++.++|.+.+++
T Consensus 122 PDl~i~Ld~~~e~~~~R~~~~dr~e~~ef~~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~ 191 (197)
T 3hjn_A 122 PDLTFYIDVDVETALKRKGELNRFEKREFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp CSEEEEEECCHHHHHHHC---CTTCCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSC
T ss_pred CCceeecCcChHHHHHhCcCcCccccHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999988776654445555543221 11111111124789999999999999888753
No 87
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.35 E-value=3.4e-12 Score=102.03 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=37.1
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCCCCH--HHHHHHHHhcC-CcccccccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDRTSE--EDARNRINAQM-PLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~~~~--~~~~~r~~~~~-~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
.+|++|||++|+++..+|+ +|+.... .+...++.... ..........++||++++++++ ++|.+.+..++
T Consensus 145 ~PDl~I~Ldv~~e~~~~Ri-~rdr~E~~~~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~l 217 (223)
T 3ld9_A 145 YPDITFIIDVDINESLSRS-CKNGYEFADMEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEVI 217 (223)
T ss_dssp CCSEEEEEECC-----------------CHHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHh-ccCccccchHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHHH
Confidence 4799999999999999999 6654332 34445544322 2222222245689999999999 99998887654
No 88
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.35 E-value=2.5e-12 Score=103.12 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=88.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh----C----CCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA----N----DVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIV 73 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~----~----g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 73 (230)
++|+|.|++||||||+++.|++ . |+.++.+... .+++..+.+.+.+.. +.++.....-.+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep------~~t~~g~~ir~~l~~------~~~~~~~~~llf 93 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP------GGTRLGETLREILLN------QPMDLETEALLM 93 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS------SSSHHHHHHHHHHHH------SCCCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC------CCChHHHHHHHHHHc------CCCCHHHHHHHH
Confidence 4799999999999999999983 2 6666544221 133334444443311 112222211111
Q ss_pred cCChHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEee----eeccc-------c-------c---cccCCeEEEE
Q 026952 74 FSDSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVP----LLFEA-------K-------M---DKWTKPIVVV 132 (230)
Q Consensus 74 ~~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~----~~~e~-------~-------~---~~~~d~vi~l 132 (230)
+ .++.+.+...+.|.+ ..+.+||.|-. ..+.. . + ...+|++|||
T Consensus 94 ~--a~R~~~~~~~i~p~l-------------~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~L 158 (227)
T 3v9p_A 94 F--AGRREHLALVIEPAL-------------ARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLF 158 (227)
T ss_dssp H--HHHHHHHHHTHHHHH-------------HTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEE
T ss_pred H--HHHHHHHHHHHHHHH-------------HcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEE
Confidence 1 122222222222222 23456788821 11110 0 0 1246999999
Q ss_pred EcCHHHHHHHHHhhCC---CC--HHHHHHHHHhcC-CcccccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 133 WVDPDTQLQRLMARDR---TS--EEDARNRINAQM-PLDIKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 133 ~~~~~~~~~Rl~~R~~---~~--~~~~~~r~~~~~-~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
++|+++..+|+.+|.+ .. ..++..+..... .........-++||++++++++.++|.+.+..
T Consensus 159 dv~~e~~~~Ri~~R~~~dr~E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 159 DVPPQIASARRGAVRMPDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp ECCSSCGGGTTTCCCCC---CCHHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHhccCccchhhhhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 9999999999998853 11 123444443221 22111222246899999999999999998865
No 89
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.31 E-value=1.3e-11 Score=97.48 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=55.4
Q ss_pred cEEEEEeeee-c-ccc---ccccCCeEEEEEcCHHHHHHHHHhhC---CCCHHHHHHHHHh-cCC----cccccccCCEE
Q 026952 108 KVIVLDVPLL-F-EAK---MDKWTKPIVVVWVDPDTQLQRLMARD---RTSEEDARNRINA-QMP----LDIKRNNADIV 174 (230)
Q Consensus 108 ~~viie~~~~-~-e~~---~~~~~d~vi~l~~~~~~~~~Rl~~R~---~~~~~~~~~r~~~-~~~----~~~~~~~ad~i 174 (230)
..+++|++.+ + +.. +...+|.++|+++|.+++.+|+.+|. |.+.+++..++.. +++ .++....||++
T Consensus 125 ~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~v 204 (208)
T 3c8u_A 125 RVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLT 204 (208)
T ss_dssp CEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEE
T ss_pred cEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEE
Confidence 5778898765 4 322 35668999999999999999999884 7899999998874 666 67778899999
Q ss_pred EeC
Q 026952 175 INN 177 (230)
Q Consensus 175 I~n 177 (230)
|+.
T Consensus 205 i~~ 207 (208)
T 3c8u_A 205 WPQ 207 (208)
T ss_dssp EC-
T ss_pred eeC
Confidence 875
No 90
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.30 E-value=5.1e-11 Score=99.97 Aligned_cols=75 Identities=12% Similarity=0.059 Sum_probs=56.7
Q ss_pred CCcEEEEEeeeecc----ccccccCCeEEEEEcCHHHHHHHHHhh-------------------CCCCHHHHHHHHHhcC
Q 026952 106 GCKVIVLDVPLLFE----AKMDKWTKPIVVVWVDPDTQLQRLMAR-------------------DRTSEEDARNRINAQM 162 (230)
Q Consensus 106 ~~~~viie~~~~~e----~~~~~~~d~vi~l~~~~~~~~~Rl~~R-------------------~~~~~~~~~~r~~~~~ 162 (230)
..+++++|++..+. ..+...+|.+||+++|.+++.+|+.+| .+.+.+++..++..++
T Consensus 194 ~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~e~a~~~v~~~~ 273 (312)
T 3aez_A 194 HPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIW 273 (312)
T ss_dssp SCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCHHHHHHHHHHHH
T ss_pred CCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCHHHHHHHHHHHH
Confidence 45788999887765 456677899999999999998888776 2678888887776543
Q ss_pred C----------cccccccCCEEEeCCCC
Q 026952 163 P----------LDIKRNNADIVINNTGT 180 (230)
Q Consensus 163 ~----------~~~~~~~ad~iI~n~~~ 180 (230)
+ ..+....||+||+++++
T Consensus 274 ~~~~~p~~~~~i~p~~~~ADlii~~~~~ 301 (312)
T 3aez_A 274 RTINRPNLVENILPTRPRATLVLRKDAD 301 (312)
T ss_dssp HHTHHHHHHHTTGGGGGGCSEEEEECTT
T ss_pred HhccHHHHHHhccCCCCCCeEEEecCCC
Confidence 2 24566789999987653
No 91
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.30 E-value=1e-11 Score=95.62 Aligned_cols=67 Identities=18% Similarity=0.082 Sum_probs=43.0
Q ss_pred CCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhcC---CcccccccCCEEEeCCC-CHHHHHHHHHHHHHH
Q 026952 126 TKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQM---PLDIKRNNADIVINNTG-TLDDLNEQVRKVLFE 194 (230)
Q Consensus 126 ~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~---~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~ 194 (230)
.+.+||+++|++++.+|+.+| ...+....++..+. +.......+|++|+|++ +++++.++|.+.++.
T Consensus 105 ~~~~i~l~~~~e~~~~R~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ad~vid~~~~~~~~~~~~i~~~l~~ 175 (179)
T 2pez_A 105 PFFEVFVDAPLHVCEQRDVKG--LYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQE 175 (179)
T ss_dssp CEEEEEEECCHHHHHHHCTTS--HHHHHHTTSSCSCBTTTBCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCHHHHHHHHhhh--hHHHHhcccccccccCCccccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 468899999999999998653 11111111111111 11122356899999876 999999999988764
No 92
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.29 E-value=5.2e-13 Score=107.24 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=42.8
Q ss_pred EEEEE-cCHHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCC
Q 026952 129 IVVVW-VDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 129 vi~l~-~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~ 198 (230)
.+|+. ++.+++.+|+.+|++.+.+.+..|++.+.+.......+|++|+|+ +++++.+++.++++.....
T Consensus 143 ~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~-~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 143 SIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNE-DIEETADRISNILRAEQMK 212 (231)
T ss_dssp EEEEECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECS-SHHHHHHHHHHHHHHHHTB
T ss_pred EEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECc-CHHHHHHHHHHHHHHHhhc
Confidence 45554 477899999999988888888888887765555667899999998 7999999999999875443
No 93
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.18 E-value=2.7e-11 Score=93.78 Aligned_cols=63 Identities=10% Similarity=0.123 Sum_probs=41.8
Q ss_pred CCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHh-cC--------CcccccccCCEEEeCC-CCHHHHHHHHHHHHHHh
Q 026952 126 TKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINA-QM--------PLDIKRNNADIVINNT-GTLDDLNEQVRKVLFEI 195 (230)
Q Consensus 126 ~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~-~~--------~~~~~~~~ad~iI~n~-~~~~~v~~~i~~~l~~~ 195 (230)
.+.+||+++|++++.+|+..+ ...+... .+ ..++ ...++++||++ .+++++.++|.+.++..
T Consensus 113 ~~~~v~L~~~~e~~~~R~~~~-------~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~Id~~~~~~~ev~~~I~~~l~~~ 184 (186)
T 2yvu_A 113 PFLEIYVKASLEEVIRRDPKG-------LYKKALKGELENFTGITDPYEP-PENPQLVLDTESNTIEHNVSYLYSLVKAV 184 (186)
T ss_dssp CEEEEEEECCHHHHHHHCHHH-------HHHHHHTTCCSSCHHHHSCCCC-CSSCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCHHHHHHhhhhh-------hhhHHhhcchhhhhhhhhcccC-CCCCcEEEECCCCCHHHHHHHHHHHHHHh
Confidence 467899999999999997432 0011100 00 1111 13578999998 69999999999988764
Q ss_pred h
Q 026952 196 K 196 (230)
Q Consensus 196 ~ 196 (230)
+
T Consensus 185 ~ 185 (186)
T 2yvu_A 185 I 185 (186)
T ss_dssp C
T ss_pred c
Confidence 4
No 94
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.16 E-value=2.6e-10 Score=91.41 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=35.9
Q ss_pred ccCCeEEEEEcCHHHHHHHHHhhCCCCH----HHHHHHHHhcCCcc--cc--cccCC-EEEeCCCCHHHHHHHHHHHHHH
Q 026952 124 KWTKPIVVVWVDPDTQLQRLMARDRTSE----EDARNRINAQMPLD--IK--RNNAD-IVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 124 ~~~d~vi~l~~~~~~~~~Rl~~R~~~~~----~~~~~r~~~~~~~~--~~--~~~ad-~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
..+|++||+++|++++.+|+.+|+...+ .++.+++....... .+ ...++ ++||++++++++.++|.+++..
T Consensus 145 ~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~ 224 (230)
T 2vp4_A 145 VQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESS 224 (230)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC---------------
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999998843211 14555554332211 11 22344 6899999999999999998875
Q ss_pred hh
Q 026952 195 IK 196 (230)
Q Consensus 195 ~~ 196 (230)
++
T Consensus 225 ~~ 226 (230)
T 2vp4_A 225 IF 226 (230)
T ss_dssp --
T ss_pred Hh
Confidence 44
No 95
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.16 E-value=2.2e-10 Score=89.86 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hC---CCc--EEehhhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AN---DVP--VVDADIIA 35 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~---g~~--~i~~d~~~ 35 (230)
.+|+|+|++||||||+++.|+ .+ |.. +++.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 489999999999999999999 33 665 77777664
No 96
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.15 E-value=3.1e-10 Score=94.11 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hC--CCcEEehhhhhH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AN--DVPVVDADIIAR 36 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~--g~~~i~~d~~~~ 36 (230)
++|+|+|+|||||||+++.|+ ++ ++.+||.|.+..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 71 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHH
Confidence 589999999999999999999 55 788999988753
No 97
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.14 E-value=1.2e-10 Score=104.69 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-C---C--CcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcC
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-N---D--VPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFS 75 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~---g--~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 75 (230)
++|+++|++||||||+|+.|++ + | +.+++.|.+.+.+. +...+ .
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~--------------~~~~f----------------~ 422 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLS--------------RGLGF----------------S 422 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTC--------------TTCCS----------------S
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhc--------------ccccc----------------c
Confidence 5799999999999999999983 3 3 35677776643321 11011 1
Q ss_pred ChHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEeeeecccc---cccc---CC-eEEEEEcCHHHHHHHHHhhCC
Q 026952 76 DSSKRQLLNGLLAPYISLGIFMEVLKLWIKGCKVIVLDVPLLFEAK---MDKW---TK-PIVVVWVDPDTQLQRLMARDR 148 (230)
Q Consensus 76 ~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~~~~viie~~~~~e~~---~~~~---~d-~vi~l~~~~~~~~~Rl~~R~~ 148 (230)
+.+...++..+. ....... +.+..+|++....++.. .... .| .+||+++|++++.+|+. |+.
T Consensus 423 ~~er~~~l~~i~---------~~~~~~l-~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~-r~~ 491 (546)
T 2gks_A 423 KEDRITNILRVG---------FVASEIV-KHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV-KGL 491 (546)
T ss_dssp HHHHHHHHHHHH---------HHHHHHH-HTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC-SSH
T ss_pred HHHHHHHHHHHH---------HHHHHHH-hCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh-ccc
Confidence 111111111111 0111111 23456788864443321 1111 46 78999999999999975 321
Q ss_pred CCHHHHHHHHHhcC----CcccccccCCEEEeCC-CCHHHHHHHHHHHHHH
Q 026952 149 TSEEDARNRINAQM----PLDIKRNNADIVINNT-GTLDDLNEQVRKVLFE 194 (230)
Q Consensus 149 ~~~~~~~~r~~~~~----~~~~~~~~ad~iI~n~-~~~~~v~~~i~~~l~~ 194 (230)
... .....++... +.+. ...+|++|||+ .+++++.++|.+.+..
T Consensus 492 ~~~-~~~~~i~~~~~vr~~~e~-~~~adivIDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 492 YKK-AKEGLIKGFTGVDDPYEP-PVAPEVRVDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp HHH-C------CCBTTTBCCCC-CSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred ccc-ccHHHHHHHHhhhhcccc-ccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 111 1111233222 1221 24589999997 6999999999988864
No 98
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=99.14 E-value=9.6e-11 Score=91.75 Aligned_cols=168 Identities=15% Similarity=0.085 Sum_probs=90.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh-CC---CcEEehhhhhHH-hhcCCchHHHHHHHHhCCcccC--CCCccCHHHHHhhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKA-ND---VPVVDADIIARD-VLKKGTGGWKKVVAAFGEDILL--PNGEVDRSKLGQIV 73 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~-~g---~~~i~~d~~~~~-~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~l~~~~ 73 (230)
|++|+|+|.+||||+|+|+.|.+ +| +.+++..+..++ ... ..|-+.-. .++. .++..+..
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~-----------~~gl~~~~~l~~~~-ykE~~R~~- 77 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQ-----------EHGLNFQRLLDTST-YKEAFRKD- 77 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHH-----------TTTCCCC--------CCSSHHHH-
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHH-----------HcCCCchhhcchhh-hHHHHHHH-
Confidence 47999999999999999999995 64 678888777664 221 11111000 0000 00000000
Q ss_pred cCChHHHHHHHhhh--hHHHHHHHHHHHHHHH-hcCCcEEEEEe-eeeccccc-cccC---CeEEEEEcCHHHHHHHHHh
Q 026952 74 FSDSSKRQLLNGLL--APYISLGIFMEVLKLW-IKGCKVIVLDV-PLLFEAKM-DKWT---KPIVVVWVDPDTQLQRLMA 145 (230)
Q Consensus 74 ~~~~~~~~~l~~~~--~p~v~~~~~~~~~~~~-~~~~~~viie~-~~~~e~~~-~~~~---d~vi~l~~~~~~~~~Rl~~ 145 (230)
...+.+.+. .|.+. +..+. ....+++|+++ +...|..+ ++.+ -.+|.+.++++++.+|...
T Consensus 78 -----m~~~g~~~R~~d~~~~------~~~~~~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~ 146 (202)
T 3ch4_B 78 -----MIRWGEEKRQADPGFF------CRKIVEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWV 146 (202)
T ss_dssp -----HHHHHHHHHHHCTTTT------HHHHSBTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCC
T ss_pred -----HHHHHHHHHhcCchHH------HHHHHHhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhh
Confidence 001111110 11110 01110 11334667764 44434332 2221 2368999999999999432
Q ss_pred hCCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCC
Q 026952 146 RDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRP 198 (230)
Q Consensus 146 R~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~ 198 (230)
+.. ..++.. .+ ..+... ..+|++|.|+++.+++.+++++++..+...
T Consensus 147 ~~~-~~Dd~e--sE--~gL~~~-~~~D~vI~Ndgt~eel~~~v~~ll~~~~~~ 193 (202)
T 3ch4_B 147 FTP-GVDDAE--SE--CGLDNF-GDFDWVIENHGVEQRLEEQLENLIEFIRSR 193 (202)
T ss_dssp CCT-TTTTSH--HH--HTTTTC-CCCSEEEEECSCHHHHHHHHHHHHHHHHTT
T ss_pred ccc-cccccc--cc--cCCCCC-CcCCEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 211 111111 12 233333 569999999999999999999999877654
No 99
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.13 E-value=7e-10 Score=89.71 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhhHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIARD 37 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~~~ 37 (230)
|.+|+|.|++||||||+++.|+ .+|+..++.+.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 3589999999999999999999 689988998887654
No 100
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.13 E-value=1.5e-10 Score=96.18 Aligned_cols=125 Identities=16% Similarity=0.142 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh--CCCcEEehhhhhHHhhcCCchHHHHHHHHhCCcccCCCCccCHHHHHhhhcCChHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA--NDVPVVDADIIARDVLKKGTGGWKKVVAAFGEDILLPNGEVDRSKLGQIVFSDSSK 79 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~--~g~~~i~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (230)
++|+|+|+|||||||+++.|++ .|+.++++|.+...+... .. |. .+.+.. ..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~-~~---------g~-----~~~~~~-----------~~ 56 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAH-EE---------RD-----EYKYTK-----------KK 56 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTS-CC---------CC--------CCH-----------HH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccC-Cc---------cc-----ccccch-----------hh
Confidence 4799999999999999999994 489999999665432210 00 00 000110 00
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHh--cCCcEEEEEeeeeccc---cccc------cCCeEEEEEcCHHHHHHHHHhhCC
Q 026952 80 RQLLNGLLAPYISLGIFMEVLKLWI--KGCKVIVLDVPLLFEA---KMDK------WTKPIVVVWVDPDTQLQRLMARDR 148 (230)
Q Consensus 80 ~~~l~~~~~p~v~~~~~~~~~~~~~--~~~~~viie~~~~~e~---~~~~------~~d~vi~l~~~~~~~~~Rl~~R~~ 148 (230)
.. ... ..+...+..... ..+..+|+|+...... .+.. ..+.+||+++|++++.+|+.+|.+
T Consensus 57 ~~----~~~----~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 128 (301)
T 1ltq_A 57 EG----IVT----GMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (301)
T ss_dssp HH----HHH----HHHHHHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG
T ss_pred hh----HHH----HHHHHHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC
Confidence 00 000 011111222221 2345678886543211 1211 113689999999999999999863
Q ss_pred --CCHHHHHHHHHh
Q 026952 149 --TSEEDARNRINA 160 (230)
Q Consensus 149 --~~~~~~~~r~~~ 160 (230)
.+.+.+..+++.
T Consensus 129 ~~~~~e~i~~~~~~ 142 (301)
T 1ltq_A 129 KAVPIDVLRSMYKS 142 (301)
T ss_dssp GCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 567777777653
No 101
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.11 E-value=2.9e-10 Score=89.86 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=40.4
Q ss_pred CeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhcC-Cccc---ccccCCEEEeCCC-CHHHHHHHHHHHHHH
Q 026952 127 KPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQM-PLDI---KRNNADIVINNTG-TLDDLNEQVRKVLFE 194 (230)
Q Consensus 127 d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~-~~~~---~~~~ad~iI~n~~-~~~~v~~~i~~~l~~ 194 (230)
+.+|||++|++++.+|+ .| +. .......+.... .... ....++++||+++ +++++.++|.+.+..
T Consensus 133 ~~vi~Ld~~~e~~~~R~-~r-~~-~~~~r~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 133 FVEVYVDVPVEVAEQRD-PK-GL-YKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp EEEEEEECCHHHHHTSC-TT-CH-HHHHHHTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHhh-hH-HH-HHHHHhcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 68999999999999995 12 00 001110000000 1111 1135689999999 999999999998864
No 102
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.07 E-value=6.1e-11 Score=94.32 Aligned_cols=74 Identities=8% Similarity=0.153 Sum_probs=48.1
Q ss_pred cCCeEEEE-EcCHHHHHHHHHhhC-CCCHHHHHHHHHhcC-Ccccc---cccCC-EEEe-CCCCHHHHHHHHHHHHHHhh
Q 026952 125 WTKPIVVV-WVDPDTQLQRLMARD-RTSEEDARNRINAQM-PLDIK---RNNAD-IVIN-NTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 125 ~~d~vi~l-~~~~~~~~~Rl~~R~-~~~~~~~~~r~~~~~-~~~~~---~~~ad-~iI~-n~~~~~~v~~~i~~~l~~~~ 196 (230)
..|++||| ++|+++..+|+..|. .....+..+++.... ..... ..... .+|| ++.+++++.++|.+.+...+
T Consensus 125 ~PDlti~L~dv~pe~~~~R~~~~~dr~E~~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l 204 (216)
T 3tmk_A 125 KPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVL 204 (216)
T ss_dssp CCSEEEEEECSCCSCGGGCCSSSCCTTCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 36999999 999999999875432 222234555543221 11111 11123 5789 88999999999999998765
Q ss_pred CC
Q 026952 197 RP 198 (230)
Q Consensus 197 ~~ 198 (230)
..
T Consensus 205 ~~ 206 (216)
T 3tmk_A 205 ST 206 (216)
T ss_dssp HS
T ss_pred hc
Confidence 43
No 103
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.05 E-value=2.2e-09 Score=87.61 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=46.6
Q ss_pred CCeEEEEEcCHHHHHHHHHhhCC-----CCH---HHHHHHHHhcC------Cccc-ccccCCEEEeCCCCHHHHHHHHHH
Q 026952 126 TKPIVVVWVDPDTQLQRLMARDR-----TSE---EDARNRINAQM------PLDI-KRNNADIVINNTGTLDDLNEQVRK 190 (230)
Q Consensus 126 ~d~vi~l~~~~~~~~~Rl~~R~~-----~~~---~~~~~r~~~~~------~~~~-~~~~ad~iI~n~~~~~~v~~~i~~ 190 (230)
.|++|||++|++++.+|+.+|++ .+. +.+..+++... +... ......++||++++++++.++|.+
T Consensus 175 pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~~eev~~~I~~ 254 (263)
T 1p5z_B 175 LDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVE 254 (263)
T ss_dssp CSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCCHHHHHHHHHH
Confidence 58999999999999999988853 121 22222333211 1111 112234679999999999999999
Q ss_pred HHHHhh
Q 026952 191 VLFEIK 196 (230)
Q Consensus 191 ~l~~~~ 196 (230)
.+...+
T Consensus 255 ~l~~~l 260 (263)
T 1p5z_B 255 KVKEFL 260 (263)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887543
No 104
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.99 E-value=8.1e-10 Score=96.26 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~ 34 (230)
.+|+|+|+|||||||+|+.|+ ++|+.+++.|.+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 589999999999999999999 689999999876
No 105
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.97 E-value=7.4e-10 Score=90.18 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-ANDVPVVDADIIA 35 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~~ 35 (230)
|++|+|+|++||||||+|+.|+ ++|+.+++.|.+.
T Consensus 1 M~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred CeEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 8899999999999999999999 6899999999863
No 106
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.94 E-value=1e-09 Score=92.95 Aligned_cols=69 Identities=14% Similarity=0.292 Sum_probs=51.1
Q ss_pred CcEEEEEe-eeeccc-c---ccccCC-----eEEEEEcCHHHHHHHHHhhC---CC--CHHHHHHHHHhc-CC----ccc
Q 026952 107 CKVIVLDV-PLLFEA-K---MDKWTK-----PIVVVWVDPDTQLQRLMARD---RT--SEEDARNRINAQ-MP----LDI 166 (230)
Q Consensus 107 ~~~viie~-~~~~e~-~---~~~~~d-----~vi~l~~~~~~~~~Rl~~R~---~~--~~~~~~~r~~~~-~~----~~~ 166 (230)
.+++|+|| +++++. . +...+| .+||+++|++++.+|+.+|. |. +.+++..++... .+ .++
T Consensus 260 ~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~Gl~~s~eea~~r~~~~d~pN~~~I~~ 339 (359)
T 2ga8_A 260 TRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLNGRDIDN 339 (359)
T ss_dssp CCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHCTTTSSHHHHH
T ss_pred CCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccCCCCCHHHHHHHHHhcCchhhHhHhh
Confidence 36889998 566653 2 234577 89999999999999999995 77 999999998753 22 334
Q ss_pred ccccCCEEE
Q 026952 167 KRNNADIVI 175 (230)
Q Consensus 167 ~~~~ad~iI 175 (230)
.+..||.|+
T Consensus 340 ~~~~ad~i~ 348 (359)
T 2ga8_A 340 HLIKVDNIV 348 (359)
T ss_dssp TBCCCTTEE
T ss_pred cCCCCCEEE
Confidence 556788664
No 107
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.94 E-value=3.5e-09 Score=96.10 Aligned_cols=66 Identities=20% Similarity=0.103 Sum_probs=41.3
Q ss_pred CeEEEEEcCHHHHHHHHHhh----CCCCHHHHHHHHHhcCCcccccccCCEEEeCCC-CHHHHHHHHHHHHHHh
Q 026952 127 KPIVVVWVDPDTQLQRLMAR----DRTSEEDARNRINAQMPLDIKRNNADIVINNTG-TLDDLNEQVRKVLFEI 195 (230)
Q Consensus 127 d~vi~l~~~~~~~~~Rl~~R----~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~~ 195 (230)
+.+|||++|++++.+|+.++ ..... .. .+............++++||+++ +++++.++|.+.+...
T Consensus 153 ~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~--~~-~~~~~~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~~ 223 (630)
T 1x6v_B 153 FFEVFVDAPLHVCEQRDVKGLYKKARAGE--IK-GFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQER 223 (630)
T ss_dssp EEEEEEECCHHHHHHHCTTSHHHHHTTC-------CBTTTBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCHHHHHHHhccccchhhhhhh--HH-HHHHhhhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHhc
Confidence 56899999999999997521 00000 00 01000011111246789999985 9999999999988753
No 108
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.94 E-value=6e-10 Score=85.93 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=37.6
Q ss_pred CeEEEEEcCH-HHHHHHHHhhCCCCHHHHHHHHHhcC-Ccc-cccccCCEEEeCCCCHHHHHHHHHHHHHHh
Q 026952 127 KPIVVVWVDP-DTQLQRLMARDRTSEEDARNRINAQM-PLD-IKRNNADIVINNTGTLDDLNEQVRKVLFEI 195 (230)
Q Consensus 127 d~vi~l~~~~-~~~~~Rl~~R~~~~~~~~~~r~~~~~-~~~-~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~ 195 (230)
..+||+.+|. +.+.+| ++.+ .|+.+.. +.. .....+|++|.|+ ++++..+++.++++.+
T Consensus 118 ~~~ifi~~p~~~~l~~R--------~~~i-~r~~~~~~~~~~~~~~~~d~~i~n~-~~~~~~~~l~~~i~~~ 179 (180)
T 1kgd_A 118 PFVVFIAAPTITPGLNE--------DESL-QRLQKESDILQRTYAHYFDLTIINN-EIDETIRHLEEAVELV 179 (180)
T ss_dssp EEEEEEECCSCCTTSCC--------SHHH-HHHHHHHHHHHHHHGGGCSEEEECS-SHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCHHHHHhh--------HHHH-HHHHHHHHHHHHhhhCCCcEEEECc-CHHHHHHHHHHHHHHh
Confidence 3679999875 333322 3444 4443321 221 2346799999998 7999999999988753
No 109
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.92 E-value=2.6e-10 Score=90.93 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=58.6
Q ss_pred CCcEEEEEeeeecccccccc--CCeEEEEEc-CHHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHH
Q 026952 106 GCKVIVLDVPLLFEAKMDKW--TKPIVVVWV-DPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLD 182 (230)
Q Consensus 106 ~~~~viie~~~~~e~~~~~~--~d~vi~l~~-~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~ 182 (230)
.+.++++|........+... ....|++.+ +.+...+|+.+|+..+++++..|+.+..........+|++|.|+ +++
T Consensus 107 ~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~~~~~~~d~~i~Nd-~l~ 185 (219)
T 1s96_A 107 TGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVND-DFD 185 (219)
T ss_dssp TTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTTGGGSSEEEECS-SHH
T ss_pred cCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhccCCCEEEECc-CHH
Confidence 34678888322111111111 134566655 56888889988876889999999865422222335689999996 889
Q ss_pred HHHHHHHHHHHHhh
Q 026952 183 DLNEQVRKVLFEIK 196 (230)
Q Consensus 183 ~v~~~i~~~l~~~~ 196 (230)
+..+++..++....
T Consensus 186 ~a~~~l~~ii~~~~ 199 (219)
T 1s96_A 186 TALTDLKTIIRAER 199 (219)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987543
No 110
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.91 E-value=6.2e-09 Score=81.51 Aligned_cols=65 Identities=29% Similarity=0.311 Sum_probs=48.5
Q ss_pred EEEEEcC-HHHHHHHHHhhCCCCHHHHHHHHHhc---CCcccccccCCEEEeCCCCHHHHHHHHHHHHHH
Q 026952 129 IVVVWVD-PDTQLQRLMARDRTSEEDARNRINAQ---MPLDIKRNNADIVINNTGTLDDLNEQVRKVLFE 194 (230)
Q Consensus 129 vi~l~~~-~~~~~~Rl~~R~~~~~~~~~~r~~~~---~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~ 194 (230)
.+|+..| ..++.+|...|+..+++.+..++... +........+|++|.|+ ++++..+++.+++..
T Consensus 119 ~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~~~~D~iivnd-~le~a~~~l~~ii~~ 187 (198)
T 1lvg_A 119 YIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIIND-DLDKAYATLKQALSE 187 (198)
T ss_dssp EEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTTTCSEEEECS-SHHHHHHHHHHHTHH
T ss_pred EEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCceEEEECC-CHHHHHHHHHHHHHH
Confidence 3677765 57788999999888999998887543 22221115789999998 789999999988865
No 111
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.89 E-value=4.2e-09 Score=82.44 Aligned_cols=32 Identities=13% Similarity=0.297 Sum_probs=27.2
Q ss_pred ccCCEEEeCCCCHHHHHHHHHHHHHHhhCCCch
Q 026952 169 NNADIVINNTGTLDDLNEQVRKVLFEIKRPLNW 201 (230)
Q Consensus 169 ~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~~~~ 201 (230)
..+|++|.|+ ++++..+++..++.....++-|
T Consensus 165 ~~fd~vivNd-~l~~a~~~l~~ii~~~~~~pqW 196 (197)
T 3ney_A 165 HYFDLSLVNN-GVDETLKKLQEAFDQACSSPQW 196 (197)
T ss_dssp GGCSEEEEES-CHHHHHHHHHHHHHHCCCCCC-
T ss_pred cCCCEEEECC-CHHHHHHHHHHHHHHccCCCCC
Confidence 4689988887 7999999999999998888777
No 112
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.87 E-value=7.5e-09 Score=93.51 Aligned_cols=64 Identities=20% Similarity=0.119 Sum_probs=39.5
Q ss_pred eEEEEEcCHHHHHHHHHhhCCCCHHHHH-HHHHhcCC-ccccc--ccCCEEEeCCC-CHHHHHHHHHHHHHH
Q 026952 128 PIVVVWVDPDTQLQRLMARDRTSEEDAR-NRINAQMP-LDIKR--NNADIVINNTG-TLDDLNEQVRKVLFE 194 (230)
Q Consensus 128 ~vi~l~~~~~~~~~Rl~~R~~~~~~~~~-~r~~~~~~-~~~~~--~~ad~iI~n~~-~~~~v~~~i~~~l~~ 194 (230)
.+||+++|++++.+|.. | +. ..... ..+..... ..++. ..++++||+++ +++++.++|.+.++.
T Consensus 498 ~~V~Lda~~ev~~~R~~-r-~l-~~~~~~~~i~~~~~~r~~~~~p~~~dl~IDts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 498 FLVHVATPLEHCEQSDK-R-GI-YAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp EEEEECCCHHHHHHHCS-S-CH-HHHHHTTSSSSCBTTTBCCCCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHhc-c-cc-hhhhhHHHHHHHHhccccccccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 78999999999999952 2 11 11110 00110001 11222 35789999986 999999999988864
No 113
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.85 E-value=1.1e-10 Score=91.99 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=43.6
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCCC------C----HHHHHHHHHhcC-CcccccccCC-EEEeCCCCHHHHHHHHHH
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDRT------S----EEDARNRINAQM-PLDIKRNNAD-IVINNTGTLDDLNEQVRK 190 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~~------~----~~~~~~r~~~~~-~~~~~~~~ad-~iI~n~~~~~~v~~~i~~ 190 (230)
.+|.++|+++|++++.+|+.+|++. + ..++.+++..+. ........++ ++|||+++++++.++|..
T Consensus 132 ~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 132 KPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp BCEEEEEEEEEHHHHHHHHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHHC-
T ss_pred CCCEEEEEeCCHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHhcC
Confidence 4688999999999999999988531 1 135555554332 1211111134 689999999999888754
No 114
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.84 E-value=1.6e-08 Score=81.44 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=45.8
Q ss_pred cCCeEEEEEcCHHHHHHHHHhhCCCCH----HHHHHHHHhcC----C--ccc----ccccC-CEEEeCCCCHHHHHHHHH
Q 026952 125 WTKPIVVVWVDPDTQLQRLMARDRTSE----EDARNRINAQM----P--LDI----KRNNA-DIVINNTGTLDDLNEQVR 189 (230)
Q Consensus 125 ~~d~vi~l~~~~~~~~~Rl~~R~~~~~----~~~~~r~~~~~----~--~~~----~~~~a-d~iI~n~~~~~~v~~~i~ 189 (230)
..|.+||+++|++++.+|+.+|+...+ .+...++.... . ..+ .+..+ .++||++++++++.+.+.
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~~~i~ 228 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQE 228 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCHHHHH
Confidence 469999999999999999998853111 23333332111 1 000 12233 357899888888888888
Q ss_pred HHHHHhh
Q 026952 190 KVLFEIK 196 (230)
Q Consensus 190 ~~l~~~~ 196 (230)
.++..+.
T Consensus 229 ~i~~~i~ 235 (241)
T 2ocp_A 229 DLMREVN 235 (241)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777653
No 115
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.74 E-value=2e-08 Score=77.54 Aligned_cols=64 Identities=11% Similarity=0.057 Sum_probs=42.3
Q ss_pred eEEEEEcCHHHHHHHHHhhCCC---CHHHHHHHHHhcCCcccccccCCEEEeCC-CCHHHHHHHHHHHHHH
Q 026952 128 PIVVVWVDPDTQLQRLMARDRT---SEEDARNRINAQMPLDIKRNNADIVINNT-GTLDDLNEQVRKVLFE 194 (230)
Q Consensus 128 ~vi~l~~~~~~~~~Rl~~R~~~---~~~~~~~r~~~~~~~~~~~~~ad~iI~n~-~~~~~v~~~i~~~l~~ 194 (230)
..+++.++.+++..|+..|... +.+......+...+. +..++++|+++ .+++++.++|.+.+..
T Consensus 108 ~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~~~~~~~~l---~~~~~~~i~t~~~~~~~~~~~i~~~l~~ 175 (191)
T 1zp6_A 108 HYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADL---GAFEHHVLPVSGKDTDQALQSAINALQS 175 (191)
T ss_dssp EEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCC---GGGGGGEEECTTCCTTTTTTTTHHHHHH
T ss_pred EEEEecCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhcc---CcccccEEECCCCCHHHHHHHHHHHHHh
Confidence 4688999999999999988542 344333333322222 22346788876 4888888888887764
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.67 E-value=4.4e-08 Score=75.65 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCC-CcEEehhhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AND-VPVVDADIIA 35 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g-~~~i~~d~~~ 35 (230)
.+|+|.|++||||||+++.|+ ..+ ..+++.|.+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~ 38 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIIN 38 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchh
Confidence 378999999999999999999 444 4678777664
No 117
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.63 E-value=1.4e-07 Score=76.47 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=29.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-hCC--CcEEehhhhhH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK-AND--VPVVDADIIAR 36 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~-~~g--~~~i~~d~~~~ 36 (230)
+++|+|+|+|||||||+++.|+ .++ +.+++.|.+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRS 70 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHH
Confidence 3589999999999999999999 554 56778887743
No 118
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.63 E-value=2.4e-08 Score=84.32 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhh--hHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADII--ARD 37 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~--~~~ 37 (230)
+|+|+|++||||||+|+.|+ +++..++++|.+ ++.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~ 46 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQG 46 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceecccccccccc
Confidence 89999999999999999999 689899999987 554
No 119
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.62 E-value=1.2e-07 Score=79.89 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~ 34 (230)
++|+|+||+||||||++..|+ +++..+||+|.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 489999999999999999999 689999999986
No 120
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.57 E-value=2.4e-07 Score=76.82 Aligned_cols=35 Identities=20% Similarity=-0.040 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh-C---C----CcEE-ehhhhhH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA-N---D----VPVV-DADIIAR 36 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~-~---g----~~~i-~~d~~~~ 36 (230)
.+|+|+|++||||||+++.|.. + | ...+ +.|.++.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence 5899999999999999999982 2 2 4455 9999865
No 121
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.50 E-value=4.1e-07 Score=81.72 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=28.6
Q ss_pred eEEEEEcCHHHHHHHHHhhCCCC---HHHHHHHHHhcCCcccccccCCEEEeCCC-CHHHHHHHHHHHHHH
Q 026952 128 PIVVVWVDPDTQLQRLMARDRTS---EEDARNRINAQMPLDIKRNNADIVINNTG-TLDDLNEQVRKVLFE 194 (230)
Q Consensus 128 ~vi~l~~~~~~~~~Rl~~R~~~~---~~~~~~r~~~~~~~~~~~~~ad~iI~n~~-~~~~v~~~i~~~l~~ 194 (230)
..||+++|.+++.+|.. |+-.. ...+...+....+.+. ...+|++||+++ +++++.++|.+.++.
T Consensus 471 ~~V~L~~~~e~~~~R~~-r~l~~~~~~~~i~~l~~~r~~~e~-P~~adl~Idt~~~s~~e~v~~Il~~L~~ 539 (552)
T 3cr8_A 471 VEIHVATPIETCESRDR-KGLYAKARAGLIPEFTGVSDPYEV-PETPELAIDTTGLAIDEAVQQILLKLEH 539 (552)
T ss_dssp EEEEECC------------------------------CCCCC-CSSCSEEECCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHhcc-ccccccccHhHHHHHHhccccccC-CCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 67999999999999964 32111 1112222221122221 245899999874 889999988887754
No 122
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.32 E-value=7.9e-06 Score=64.63 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=49.2
Q ss_pred eEEEEE-cCHHHHHHHHHhhCCCCHHHHHHHHHhcCCcccc--cccCCEEEeCCCCHHHHHHHHHHHHHHhh
Q 026952 128 PIVVVW-VDPDTQLQRLMARDRTSEEDARNRINAQMPLDIK--RNNADIVINNTGTLDDLNEQVRKVLFEIK 196 (230)
Q Consensus 128 ~vi~l~-~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~--~~~ad~iI~n~~~~~~v~~~i~~~l~~~~ 196 (230)
..+++. .+...+.+|+.+|+..+++.+.+++......... ...+|.++.|+ +.++..+.+.+++....
T Consensus 139 ~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~-~~~ea~~~~~~ii~~~~ 209 (218)
T 1z6g_A 139 LYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIIND-DLTLTYQQLKNYLLNSY 209 (218)
T ss_dssp EEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECS-SHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECC-CHHHHHHHHHHHHHHHH
Confidence 567776 4567788899999888888888887543211111 25689999887 78899999999887643
No 123
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.32 E-value=9.5e-06 Score=72.47 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hC---CC--cEEehhhhhHHhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AN---DV--PVVDADIIARDVL 39 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~---g~--~~i~~d~~~~~~~ 39 (230)
.+|+++|.|||||||+|+.|+ .+ ++ .+++.|++.+...
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~ 79 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAV 79 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhc
Confidence 479999999999999999998 33 33 4588898766543
No 124
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=98.28 E-value=7.5e-08 Score=79.78 Aligned_cols=72 Identities=11% Similarity=0.167 Sum_probs=47.4
Q ss_pred CeEEEEEcCH-HHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCCCch
Q 026952 127 KPIVVVWVDP-DTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRPLNW 201 (230)
Q Consensus 127 d~vi~l~~~~-~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~~~~ 201 (230)
..+|||.+|. +++.+|+..|...+.+.+..|..+. .......+|++|.|+ ++++..+++..++.....++-|
T Consensus 211 pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~k~--e~e~~~~fD~vIvNd-dle~a~~~l~~iI~~e~~~~~W 283 (292)
T 3tvt_A 211 PVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKM--EQEFGEYFTGVVQGD-TIEEIYSKVKSMIWSQSGPTIW 283 (292)
T ss_dssp CEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHHHH--HHHHTTTCSEEECCS-SHHHHHHHHHHHHHHHTCSEEE
T ss_pred ceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHHHH--HHhhhhhCCEEEECc-CHHHHHHHHHHHHHHhhCCCeE
Confidence 4678888765 4555555444334444555554321 112335689999887 8999999999999988888555
No 125
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=98.27 E-value=1.2e-07 Score=78.66 Aligned_cols=93 Identities=15% Similarity=0.275 Sum_probs=59.3
Q ss_pred CcEEEEEeeeeccccc--cccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhcCCcc-cccccCCEEEeCCCCHHH
Q 026952 107 CKVIVLDVPLLFEAKM--DKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQMPLD-IKRNNADIVINNTGTLDD 183 (230)
Q Consensus 107 ~~~viie~~~~~e~~~--~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~-~~~~~ad~iI~n~~~~~~ 183 (230)
+..+|+|...-.-..+ ......+|||.+|.-...+|+.+|. +++++.+|+++....+ .....+|++|.|+ ++++
T Consensus 194 G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~L~~R~--t~~~i~~rl~~a~~~e~~~~~~fd~vivNd-~le~ 270 (295)
T 1kjw_A 194 GKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRI--TEEQARKAFDRATKLEQEFTECFSAIVEGD-SFEE 270 (295)
T ss_dssp TCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTTS--CHHHHHHHHHHHHHHHHHHGGGCSEEECCS-SHHH
T ss_pred CCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhccccCeEEEECc-CHHH
Confidence 3456777532211111 1223478899877544444465553 5677878876543211 2345689999987 8999
Q ss_pred HHHHHHHHHHHhhCCCchh
Q 026952 184 LNEQVRKVLFEIKRPLNWT 202 (230)
Q Consensus 184 v~~~i~~~l~~~~~~~~~~ 202 (230)
..+++..++.....++-|-
T Consensus 271 a~~~l~~ii~~~~~~~~Wv 289 (295)
T 1kjw_A 271 IYHKVKRVIEDLSGPYIWV 289 (295)
T ss_dssp HHHHHHHHHHHHSCSEEEE
T ss_pred HHHHHHHHHHhccCCCEEe
Confidence 9999999999888886674
No 126
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.18 E-value=8.4e-07 Score=74.36 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~ 34 (230)
++|+|+|++||||||+++.|+ ++|..+++.|.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 389999999999999999999 689999999875
No 127
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.15 E-value=2.4e-06 Score=79.30 Aligned_cols=93 Identities=15% Similarity=0.256 Sum_probs=60.4
Q ss_pred CcEEEEEeeeecc--ccccccCCeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhcCCcc-cccccCCEEEeCCCCHHH
Q 026952 107 CKVIVLDVPLLFE--AKMDKWTKPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQMPLD-IKRNNADIVINNTGTLDD 183 (230)
Q Consensus 107 ~~~viie~~~~~e--~~~~~~~d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~-~~~~~ad~iI~n~~~~~~ 183 (230)
+..+++|...-.- ........++||+.+|.....+++..|. +++++.+|+++....+ .....+|++|.|+ ++++
T Consensus 620 g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~l~~R~--t~~~~~~rl~~a~~~e~~~~~~fd~vi~Nd-~l~~ 696 (721)
T 2xkx_A 620 GKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRI--TEEQARKAFDRATKLEQEFTECFSAIVEGD-SFEE 696 (721)
T ss_pred CCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHHHhccC--CHHHHHHHHHHHHHHHHhccccCcEEEECc-CHHH
Confidence 3456777532211 1111233478999987655555566663 4567778876553212 2345689999997 8999
Q ss_pred HHHHHHHHHHHhhCCCchh
Q 026952 184 LNEQVRKVLFEIKRPLNWT 202 (230)
Q Consensus 184 v~~~i~~~l~~~~~~~~~~ 202 (230)
..+++..++.....++-|-
T Consensus 697 a~~~l~~~i~~~~~~~~Wv 715 (721)
T 2xkx_A 697 IYHKVKRVIEDLSGPYIWV 715 (721)
T ss_pred HHHHHHHHHHhccCCcEEe
Confidence 9999999999888887774
No 128
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.14 E-value=8.3e-06 Score=68.68 Aligned_cols=22 Identities=27% Similarity=0.293 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
+.|+|.|+.||||||+++.|++
T Consensus 8 ~fI~~EG~dGaGKTT~~~~La~ 29 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRVMAS 29 (334)
T ss_dssp EEEEEECSTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999993
No 129
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.03 E-value=4.5e-05 Score=67.16 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCC-----CcEEehhhhhHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AND-----VPVVDADIIARD 37 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g-----~~~i~~d~~~~~ 37 (230)
.+|++.|.|||||||+++.|+ .++ ...++.|.+...
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~ 81 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD 81 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh
Confidence 379999999999999999999 333 335555555443
No 130
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.00 E-value=3.9e-06 Score=69.92 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~ 34 (230)
++|+|+||+||||||++..|+ +++..+|++|.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 489999999999999999999 688889998875
No 131
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.97 E-value=4.6e-06 Score=69.38 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~~ 34 (230)
++|+|+||+||||||++..|+ +++..+++.|.+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 479999999999999999999 688888988763
No 132
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.92 E-value=1.3e-05 Score=69.02 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=59.2
Q ss_pred CCcEEEEEeeeeccccc--cccCCeEEEEEcCHHHHHHHHHhhCC-CCHHHHHHHHHhcCCccc-ccccCCEEEeCCCCH
Q 026952 106 GCKVIVLDVPLLFEAKM--DKWTKPIVVVWVDPDTQLQRLMARDR-TSEEDARNRINAQMPLDI-KRNNADIVINNTGTL 181 (230)
Q Consensus 106 ~~~~viie~~~~~e~~~--~~~~d~vi~l~~~~~~~~~Rl~~R~~-~~~~~~~~r~~~~~~~~~-~~~~ad~iI~n~~~~ 181 (230)
.+..+++|...-.-..+ .....++|||..|.-...+++.+|.+ .+++.+.+++++....+. ....+|++|.|+ ++
T Consensus 288 ~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a~~~e~~~~~~fd~vivNd-~l 366 (391)
T 3tsz_A 288 QDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLN-SM 366 (391)
T ss_dssp TTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHGGGCSEEEECC-TT
T ss_pred cCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhccccCcEEEECC-Cc
Confidence 34567888533221111 12234789999877555544455643 455566666654423322 345789999987 55
Q ss_pred H-HHHHHHHHHHHHhhCCCchh
Q 026952 182 D-DLNEQVRKVLFEIKRPLNWT 202 (230)
Q Consensus 182 ~-~v~~~i~~~l~~~~~~~~~~ 202 (230)
+ ..++++..++.....++-|-
T Consensus 367 ~~~a~~~l~~ii~~~~~~~~Wv 388 (391)
T 3tsz_A 367 NDGWYGALKEAIQQQQNQLVWV 388 (391)
T ss_dssp CCHHHHHHHHHHHHHHHSEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCeec
Confidence 5 68999999998888776663
No 133
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.81 E-value=1.5e-05 Score=62.11 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~ 34 (230)
+.|+|+|++||||||+|..|++.+..+++.|..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~~iIsdDs~ 67 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGHRLIADDRV 67 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTCEEEESSEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCCeEEecchh
Confidence 468999999999999999999777788888764
No 134
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.81 E-value=8.7e-06 Score=70.08 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEehhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDADI 33 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~ 33 (230)
++|+|+||+||||||++..|+ +++..+|++|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 689999999999999999999 67878899877
No 135
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.75 E-value=1.7e-05 Score=60.27 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhCCCcEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKANDVPVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~ 34 (230)
.+++|.|++||||||+++.+. .|...++.|.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~-~~~~~~~~d~~ 41 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF-KPTEVISSDFC 41 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS-CGGGEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHc-cCCeEEccHHH
Confidence 378999999999999999865 34556666654
No 136
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.71 E-value=1.8e-05 Score=60.71 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCC
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-AND 25 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g 25 (230)
+.++|.|++||||||+++.|+ ..+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999999999999999999 444
No 137
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.70 E-value=2.6e-05 Score=68.41 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=58.1
Q ss_pred CcEEEEEeeeeccccc--cccCCeEEEEEcCHHHHHHHHHhhCC-CCHHHHHHHHHhcCCcc-cccccCCEEEeCCCCH-
Q 026952 107 CKVIVLDVPLLFEAKM--DKWTKPIVVVWVDPDTQLQRLMARDR-TSEEDARNRINAQMPLD-IKRNNADIVINNTGTL- 181 (230)
Q Consensus 107 ~~~viie~~~~~e~~~--~~~~d~vi~l~~~~~~~~~Rl~~R~~-~~~~~~~~r~~~~~~~~-~~~~~ad~iI~n~~~~- 181 (230)
+..+|+|...-.-..+ .....++|||..|.-..++++++|.. .+++.+.+++++....+ .....+|++|.|+ ++
T Consensus 281 Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~~e~~~~~~fD~vIvNd-dl~ 359 (468)
T 3shw_A 281 DKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLN-SMN 359 (468)
T ss_dssp TCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHGGGCSEEEECB-TTB
T ss_pred CCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhhccCCEEEECC-CcH
Confidence 4567888533221111 12234789999877555554444533 44556666665442222 2346789999887 45
Q ss_pred HHHHHHHHHHHHHhhCCCch
Q 026952 182 DDLNEQVRKVLFEIKRPLNW 201 (230)
Q Consensus 182 ~~v~~~i~~~l~~~~~~~~~ 201 (230)
+..++++..++.....++-|
T Consensus 360 d~a~~~L~~ii~~~~~~~~W 379 (468)
T 3shw_A 360 DGWYGALKEAIQQQQNQLVW 379 (468)
T ss_dssp CHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHhcCCCEE
Confidence 58999999999888777666
No 138
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=97.66 E-value=0.00012 Score=60.85 Aligned_cols=96 Identities=18% Similarity=0.152 Sum_probs=59.2
Q ss_pred CcEEEEEeeeeccccc--cccCCeEEEEEcCHHHHHHHHHhhCC-CCHHHHHHHHHhcCCcc-cccccCCEEE-eCCCCH
Q 026952 107 CKVIVLDVPLLFEAKM--DKWTKPIVVVWVDPDTQLQRLMARDR-TSEEDARNRINAQMPLD-IKRNNADIVI-NNTGTL 181 (230)
Q Consensus 107 ~~~viie~~~~~e~~~--~~~~d~vi~l~~~~~~~~~Rl~~R~~-~~~~~~~~r~~~~~~~~-~~~~~ad~iI-~n~~~~ 181 (230)
+..+|+|...-.-..+ .....++|||..|.-...+++..|.+ .+++.+.+++++....+ ......|++| .|+ ++
T Consensus 198 Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~eiE~~~~~~FD~vI~VND-dl 276 (308)
T 3kfv_A 198 DKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNG-TS 276 (308)
T ss_dssp TCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHGGGCSEEEEECS-SS
T ss_pred CCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhhccCcEEEEcCC-CH
Confidence 4567888543221111 12234689999876544444466644 45555555555432222 2345689999 676 77
Q ss_pred HHHHHHHHHHHHHhhCCCchhh
Q 026952 182 DDLNEQVRKVLFEIKRPLNWTE 203 (230)
Q Consensus 182 ~~v~~~i~~~l~~~~~~~~~~~ 203 (230)
+..++++..++...-..+-|.-
T Consensus 277 e~A~~~L~~iI~~~~~epqWvp 298 (308)
T 3kfv_A 277 DTWYQELKAIIREQQTRPIWTA 298 (308)
T ss_dssp THHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEee
Confidence 8999999999999888877753
No 139
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.62 E-value=3.2e-05 Score=58.76 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|++|+|+|++||||||++..|.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999887
No 140
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.60 E-value=1.6e-05 Score=60.67 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|++|+|+|++||||||+++.|.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999998
No 141
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.57 E-value=3e-05 Score=68.84 Aligned_cols=25 Identities=8% Similarity=-0.037 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCC
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDV 26 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~ 26 (230)
++|+|+|.|||||||+|+.|+ +++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999 5553
No 142
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=97.57 E-value=0.00026 Score=58.60 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh----CCCcEEehhhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA----NDVPVVDADIIA 35 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~----~g~~~i~~d~~~ 35 (230)
.+|+|.|..||||||+.+.|.+ .|+.++.+....
T Consensus 87 vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt 124 (304)
T 3czq_A 87 VMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPT 124 (304)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcC
Confidence 5899999999999999999993 577777765543
No 143
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.57 E-value=5e-05 Score=57.76 Aligned_cols=32 Identities=31% Similarity=0.282 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCcEEehhhh
Q 026952 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADII 34 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~ 34 (230)
=|.|+|+||+||||+|..|.+.|+.+++-|..
T Consensus 18 gvli~G~SGaGKStlal~L~~rG~~lvaDD~v 49 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRGHQLVCDDVI 49 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTTCEEEESSEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCCeEecCCEE
Confidence 37899999999999999999999988876654
No 144
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.55 E-value=4.5e-05 Score=58.24 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|++|+|+|++||||||+++.|.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~ 27 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLI 27 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHH
Confidence 5689999999999999999987
No 145
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.54 E-value=4.4e-05 Score=59.59 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999998
No 146
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.51 E-value=4.3e-05 Score=63.11 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
+.+.|.||||+|||++|+.++ +.|.+++..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 467889999999999999999 566654443
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.49 E-value=6.5e-05 Score=61.47 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=23.2
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
++|.|||||||||+++.++ ..+...+..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 7899999999999999999 566555443
No 148
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.48 E-value=5.8e-05 Score=60.80 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-|.|.|+|||||||+++.++ ..+.+++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 47899999999999999999 556555443
No 149
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.43 E-value=6.4e-05 Score=57.18 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH-h----CCC--cEEehhhhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-A----NDV--PVVDADIIA 35 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~----~g~--~~i~~d~~~ 35 (230)
.++|.|++||||||+++.++ . .|. .+++..++.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 68999999999999999997 2 353 355555443
No 150
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=97.43 E-value=0.00059 Score=57.10 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=54.9
Q ss_pred CCcEEEEEeeee-ccccccc-cCC-eEEEEEcCH-HHHHHHHHhhCCCCHHHHHHHHHhcCC-cccccccCCEEEeCCCC
Q 026952 106 GCKVIVLDVPLL-FEAKMDK-WTK-PIVVVWVDP-DTQLQRLMARDRTSEEDARNRINAQMP-LDIKRNNADIVINNTGT 180 (230)
Q Consensus 106 ~~~~viie~~~~-~e~~~~~-~~d-~vi~l~~~~-~~~~~Rl~~R~~~~~~~~~~r~~~~~~-~~~~~~~ad~iI~n~~~ 180 (230)
.+..+++|.... ....++. ..+ ..|||..|. +++.+|+..|+....+.+..+++.... .......+|++|.|+ +
T Consensus 228 ~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ae~E~~~~~~~FDyvIVND-d 306 (337)
T 4dey_A 228 TLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFDVILDEN-Q 306 (337)
T ss_dssp TCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHHHHHHHHSCGGGCSEEECCS-S
T ss_pred CCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhCcccCCEEEECC-C
Confidence 345678887544 3333322 223 568888754 788888888854223334444322211 222356789999987 7
Q ss_pred HHHHHHHHHHHHHHhh
Q 026952 181 LDDLNEQVRKVLFEIK 196 (230)
Q Consensus 181 ~~~v~~~i~~~l~~~~ 196 (230)
++..++++..++..+.
T Consensus 307 Le~A~~~L~~iI~~~~ 322 (337)
T 4dey_A 307 LEDACEHLADYLEAYW 322 (337)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999987643
No 151
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.42 E-value=7.8e-05 Score=57.16 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCcEE
Q 026952 3 IVGLTGGISSGKSTVSNLFKANDVPVV 29 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~~g~~~i 29 (230)
+|.|+|++||||||+|..|+..|.+++
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~~~~~~ 27 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGDAPQVL 27 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCSCSSEE
T ss_pred CEEEECCCCCcHHHHHHHHHhcCCCeE
Confidence 478999999999999999993365443
No 152
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.39 E-value=0.0001 Score=60.93 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-|.|.|+|||||||+|+.++ ..+..++..
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~~~~~i~v 80 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANECQANFISI 80 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEECCCCcCHHHHHHHHHHHhCCCEEEE
Confidence 48899999999999999999 567666554
No 153
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.38 E-value=9.8e-05 Score=55.41 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999
No 154
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.37 E-value=0.0001 Score=59.15 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
-|.|.|+||+||||+|+.++ +.+.+++.
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999 56665544
No 155
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.37 E-value=8.6e-05 Score=59.41 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999998
No 156
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=8.3e-05 Score=64.64 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d 32 (230)
=|.+.||||||||++|++++ +.|.+++..+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 37899999999999999999 6787766653
No 157
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.36 E-value=0.00013 Score=58.51 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
++|.|+|||||||+++.++ ..+..++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7899999999999999999 44444443
No 158
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.35 E-value=0.0001 Score=58.69 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999999887
No 159
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=8.7e-05 Score=64.60 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
=|.+.||||||||++|++++ +.|.+++..
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred eeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 48899999999999999999 678776654
No 160
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.35 E-value=0.00013 Score=59.89 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-+.|.|+|||||||+|+.++ ..+.+++..
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 58899999999999999999 577655443
No 161
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=9.1e-05 Score=64.55 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
=|.+.||||||||++|++++ +.|++++..
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 47899999999999999999 677776654
No 162
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=9.2e-05 Score=63.75 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
=|.+.||||||||++|++++ +.|.++++.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 37899999999999999999 678777665
No 163
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.34 E-value=0.0001 Score=57.88 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999997
No 164
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.33 E-value=0.00048 Score=64.35 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d 32 (230)
=|.+.||||||||++|+.++ +.|.+++..+
T Consensus 240 GILL~GPPGTGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 48899999999999999999 6888777654
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.31 E-value=0.00016 Score=58.95 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-+.|.|+||+||||+|+.++ ..+..++..
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 47899999999999999999 677665543
No 166
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.30 E-value=0.0001 Score=58.47 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 167
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.29 E-value=0.00016 Score=61.26 Aligned_cols=31 Identities=32% Similarity=0.381 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADI 33 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~ 33 (230)
-|.|.|+|||||||+|+.++ ..+.+++..+.
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 47899999999999999999 57777766543
No 168
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.28 E-value=0.00014 Score=58.38 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 169
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.27 E-value=0.00015 Score=56.47 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|+++.|+|+||||||+.|..+.
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999988864
No 170
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.25 E-value=0.00016 Score=58.79 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|+|++||||||+.+.|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 78999999999999999998
No 171
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.25 E-value=0.00014 Score=59.66 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 172
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.25 E-value=0.00014 Score=58.21 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 173
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.24 E-value=0.00013 Score=57.28 Aligned_cols=20 Identities=30% Similarity=0.144 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 174
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.23 E-value=0.00022 Score=58.18 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
++|.|++||||||+++.++ ..+..++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence 7899999999999999999 44444443
No 175
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.23 E-value=0.00015 Score=59.17 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999998
No 176
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.21 E-value=0.00016 Score=58.29 Aligned_cols=20 Identities=40% Similarity=0.785 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 177
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.21 E-value=0.00022 Score=62.29 Aligned_cols=31 Identities=13% Similarity=0.336 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADI 33 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~ 33 (230)
-|.+.|+||+||||+|+.|+ ..+.+++..+.
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 48899999999999999999 67887776653
No 178
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00016 Score=62.65 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
=|.+.||||||||++|++++ +.|.+++..
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 47899999999999999999 677776654
No 179
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.21 E-value=0.00016 Score=58.79 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 180
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.20 E-value=0.00018 Score=60.37 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcE
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPV 28 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~ 28 (230)
..++|.|||||||||+++.++ ..+..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 358999999999999999999 555543
No 181
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.20 E-value=0.00017 Score=57.94 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 182
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.20 E-value=0.00017 Score=57.81 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 183
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.19 E-value=0.00017 Score=55.72 Aligned_cols=20 Identities=35% Similarity=0.252 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+|+|.|++||||||+.+.|+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 68999999999999999998
No 184
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00015 Score=63.35 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
=|.+.||||||||++|++++ +.|.+++..
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 47899999999999999999 678776654
No 185
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.19 E-value=0.00015 Score=57.22 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999998
No 186
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.19 E-value=0.00019 Score=57.84 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
+++|.|++||||||+.+.|+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999994
No 187
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.19 E-value=0.00017 Score=58.35 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.19 E-value=0.00022 Score=57.92 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-+.|.|+||+||||+|+.++ ..+.+++..
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 58899999999999999999 566665544
No 189
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.18 E-value=0.00018 Score=57.26 Aligned_cols=20 Identities=15% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 190
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.18 E-value=0.00016 Score=53.65 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.++|.|++||||||+++.++
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999998
No 191
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.18 E-value=0.00026 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~ 23 (230)
|+.|++.|.+|+||||+.+.|..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999984
No 192
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.18 E-value=0.00018 Score=58.56 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 52 i~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 68999999999999999998
No 193
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.16 E-value=0.00019 Score=58.12 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 194
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.16 E-value=0.00021 Score=59.37 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
+++|.|++||||||+++.|..
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999999993
No 195
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.16 E-value=0.00027 Score=60.13 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d 32 (230)
-|.|.|+||+||||+|+.++ ..+.+++..+
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 48899999999999999999 5776666543
No 196
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.15 E-value=0.00022 Score=58.07 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
+++|.|++||||||+.+.|+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999993
No 197
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.14 E-value=0.0002 Score=58.46 Aligned_cols=20 Identities=45% Similarity=0.644 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 198
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.14 E-value=0.00024 Score=59.27 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-|.|.|+||+|||++|+.++ +.+..++..
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 48999999999999999999 566655543
No 199
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.14 E-value=0.00021 Score=58.02 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 200
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.14 E-value=0.00024 Score=55.65 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.++
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 201
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.13 E-value=0.00025 Score=55.26 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hC--CCcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-AN--DVPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~--g~~~i~~d 32 (230)
+++|.|++||||||++..++ .. +..+++.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 68999999999999999998 32 33455554
No 202
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.12 E-value=0.00022 Score=57.51 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999998
No 203
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.11 E-value=0.00018 Score=60.15 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|++++|+|++||||||+.+.|.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHH
Confidence 4589999999999999999998
No 204
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.11 E-value=0.00023 Score=58.47 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999998
No 205
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.11 E-value=0.00025 Score=53.43 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.+.|+|++|+||||+++.++
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 206
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.11 E-value=0.00023 Score=57.92 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999998
No 207
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.10 E-value=0.0003 Score=58.81 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hC-CCcEEe
Q 026952 3 IVGLTGGISSGKSTVSNLFK-AN-DVPVVD 30 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~-g~~~i~ 30 (230)
-|.|.|+||+|||++|+.++ +. +..++.
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 58899999999999999999 55 655544
No 208
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.10 E-value=0.00027 Score=58.00 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
-+.|.|+||+||||+|+.++ ..+..++.
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 37899999999999999999 45655443
No 209
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.09 E-value=0.00025 Score=57.37 Aligned_cols=20 Identities=35% Similarity=0.507 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 210
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.08 E-value=0.00027 Score=59.97 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.7
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
|.|.|+||+||||+|+.++ +.+.+++..
T Consensus 87 iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 7899999999999999999 567665544
No 211
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.08 E-value=0.0003 Score=51.67 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 026952 4 VGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~~ 23 (230)
|.|.|++|||||++|+.+++
T Consensus 27 vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999994
No 212
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.08 E-value=0.00028 Score=60.35 Aligned_cols=69 Identities=3% Similarity=-0.107 Sum_probs=43.5
Q ss_pred CeEEEEEcCHHHHHHHHHhhCCCCHHHHHHHHHhcCCcccccccCCEEEeCCCCHHHHHHHHHHHHHHhhCCCchhhhhh
Q 026952 127 KPIVVVWVDPDTQLQRLMARDRTSEEDARNRINAQMPLDIKRNNADIVINNTGTLDDLNEQVRKVLFEIKRPLNWTEFWL 206 (230)
Q Consensus 127 d~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~r~~~~~~~~~~~~~ad~iI~n~~~~~~v~~~i~~~l~~~~~~~~~~~~~~ 206 (230)
|+++|+++|++++.+|+.+| |.+..... ....+. +...+.+.+.+..+++.+...-+||.|--
T Consensus 302 DLliyLd~~~~~l~~RL~~R-g~t~~~~l---~~~~~~-------------~dy~~~l~~~~~~w~~~l~~~~~~~~~~~ 364 (377)
T 1svm_A 302 YLKHCLERSEFLLEKRIIQS-GIALLLML---IWYRPV-------------AEFAQSIQSRIVEWKERLDKEFSLSVYQK 364 (377)
T ss_dssp HHHHHHHTCTHHHHTTCTTC-HHHHHHHH---HHHSCG-------------GGSCGGGHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHc-CccHHHhh---hccCCH-------------HHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 66788999999999999887 32222111 000011 11224567788889988888889999855
Q ss_pred chHHHH
Q 026952 207 SRQGAL 212 (230)
Q Consensus 207 ~~~~~~ 212 (230)
|..-..
T Consensus 365 ~~~~~~ 370 (377)
T 1svm_A 365 MKFNVA 370 (377)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 213
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.06 E-value=0.00011 Score=59.51 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
+.|.|+||+||||+|+.++ +.+.+++.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 6789999999999999999 45544443
No 214
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.06 E-value=0.0003 Score=58.40 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.+|+|.|++||||||+++.|+
T Consensus 103 ~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 379999999999999999998
No 215
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.06 E-value=0.00028 Score=59.89 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.||+||||||+.+.++
T Consensus 32 ~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHh
Confidence 68999999999999999999
No 216
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.05 E-value=0.00041 Score=57.95 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d 32 (230)
-+.|+|++|+||||+|+.++ ..+..++...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 47899999999999999999 5776665543
No 217
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.04 E-value=0.0004 Score=58.88 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-|.|.|+||+||||+|+.++ ..+..++..
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 58899999999999999999 577665543
No 218
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.04 E-value=0.0003 Score=57.25 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 219
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.03 E-value=0.00035 Score=55.30 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.++
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999998
No 220
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.02 E-value=0.00033 Score=55.09 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh----CCC--cEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA----NDV--PVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~----~g~--~~i~~d~~ 34 (230)
..+.|.|++|+||||+++.+++ .+. .+++.+.+
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3588999999999999999982 233 35555544
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.02 E-value=0.00036 Score=56.98 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..++|.|++||||||+.+.|.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~ 23 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLF 23 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999998
No 222
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.00 E-value=0.0055 Score=54.22 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-h---CCCcEEehhhhhH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-A---NDVPVVDADIIAR 36 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~---~g~~~i~~d~~~~ 36 (230)
.+|+|.|..||||+|+.+.|. . .|+.++.......
T Consensus 44 vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~ 82 (500)
T 3czp_A 44 VIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSD 82 (500)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCH
T ss_pred EEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCCh
Confidence 589999999999999999999 3 4677777655433
No 223
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.99 E-value=0.00042 Score=53.43 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.-+.|.|++|+||||+++.++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 224
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.99 E-value=0.00037 Score=59.61 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 31 ~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHHH
Confidence 68999999999999999999
No 225
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.98 E-value=0.00049 Score=61.29 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
+.+.|+|+||+||||+|+.++ +.|+.++..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 468999999999999999999 678776654
No 226
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.98 E-value=0.00039 Score=58.98 Aligned_cols=20 Identities=45% Similarity=0.679 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 43 ~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999998
No 227
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.98 E-value=0.00037 Score=59.21 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..++|.|++||||||+++.|+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLA 191 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999999
No 228
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.98 E-value=0.00027 Score=53.16 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.+.|+|++|+||||+++.++
T Consensus 45 ~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 229
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.98 E-value=0.00039 Score=59.07 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHHH
Confidence 68999999999999999999
No 230
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.97 E-value=0.0004 Score=59.09 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHHh
Confidence 68999999999999999998
No 231
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.97 E-value=0.00039 Score=57.15 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|+|||||||+++.++
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 232
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.96 E-value=0.00052 Score=57.16 Aligned_cols=32 Identities=25% Similarity=0.180 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCcEEehhhh
Q 026952 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADII 34 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~ 34 (230)
-|.|+|+||+||||+|..|.+.|+.+++-|..
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~ 177 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKRGHRLVADDNV 177 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTTCEEEESSEE
T ss_pred EEEEEeCCCCCHHHHHHHHHhcCCceecCCeE
Confidence 37899999999999999999889888866554
No 233
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.96 E-value=0.00048 Score=57.27 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCCC--cEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----ANDV--PVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g~--~~i~~d~~ 34 (230)
.+|+|+|++||||||++..|+ ..|. .+++.|.+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 589999999999999999998 2343 35555654
No 234
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.96 E-value=0.00048 Score=57.13 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.+|+|.|++||||||+++.|+
T Consensus 101 ~vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 235
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.96 E-value=0.00042 Score=58.84 Aligned_cols=20 Identities=40% Similarity=0.393 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+|+|+|++||||||+.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999987
No 236
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.96 E-value=0.00042 Score=58.97 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHh
Confidence 68999999999999999999
No 237
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.95 E-value=0.00027 Score=58.77 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 68999999999999999998
No 238
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.95 E-value=0.00043 Score=61.04 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-|.|.|+|||||||+++.++ +.+.+++..
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 37899999999999999999 667666544
No 239
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.94 E-value=0.00044 Score=59.05 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 39 ~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 68999999999999999999
No 240
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.93 E-value=0.00051 Score=57.09 Aligned_cols=32 Identities=31% Similarity=0.199 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhCCCcEEehhhh
Q 026952 3 IVGLTGGISSGKSTVSNLFKANDVPVVDADII 34 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~~g~~~i~~d~~ 34 (230)
-|.|+|+||+||||+|-.|.+.|+.+++-|..
T Consensus 149 gvli~G~sG~GKStlal~l~~~G~~lv~DD~v 180 (312)
T 1knx_A 149 GVLLTGRSGIGKSECALDLINKNHLFVGDDAI 180 (312)
T ss_dssp EEEEEESSSSSHHHHHHHHHTTTCEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCCEEEeCCEE
Confidence 37899999999999999999999888776654
No 241
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.93 E-value=0.00046 Score=58.97 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHH
Confidence 68999999999999999999
No 242
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.92 E-value=0.0004 Score=57.31 Aligned_cols=20 Identities=15% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999998
No 243
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.92 E-value=0.00057 Score=58.49 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-|.|.|+||+|||++|+.++ +.+..++..
T Consensus 150 ~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 58999999999999999999 677766654
No 244
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.91 E-value=0.00049 Score=57.76 Aligned_cols=21 Identities=24% Similarity=0.244 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.+|+|.|++||||||+++.|+
T Consensus 130 ~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 245
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.90 E-value=0.00051 Score=57.16 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hC---CCc--EEehhhhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-AN---DVP--VVDADIIA 35 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~---g~~--~i~~d~~~ 35 (230)
-+.|.|+||+||||+++.++ .. +.. +++...+.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 47899999999999999998 32 554 45555543
No 246
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.89 E-value=0.00036 Score=59.05 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 28 ~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 68999999999999999999
No 247
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.88 E-value=0.0006 Score=53.18 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
++.|+|+|.+||||||+++.|.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~ 51 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTI 51 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 248
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.88 E-value=0.00041 Score=58.99 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
+|+|+|++||||||+++.|..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999993
No 249
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.88 E-value=0.0003 Score=51.51 Aligned_cols=20 Identities=40% Similarity=0.370 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 026952 4 VGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~~ 23 (230)
|.|.|++|+|||++|+.+++
T Consensus 30 vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCC
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 78999999999999999994
No 250
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.86 E-value=0.00052 Score=58.94 Aligned_cols=20 Identities=50% Similarity=0.612 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 49 ~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 68999999999999999999
No 251
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.86 E-value=0.00071 Score=60.00 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=23.1
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
++|.|+|||||||+++.++ ..+..++..
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~~~i~i 95 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARVPFITA 95 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 7899999999999999999 555555443
No 252
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.86 E-value=0.00075 Score=50.21 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|++|+||||+.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999983
No 253
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.86 E-value=0.0004 Score=54.31 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
-+.|.||||+||||+|..|++
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999993
No 254
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.85 E-value=0.00062 Score=53.14 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.+.|+|++|+||||+++.++
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 255
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.85 E-value=0.0006 Score=51.66 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+.+|+|++||||||+.++|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999998
No 256
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.85 E-value=0.00057 Score=59.88 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCC--CcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-AND--VPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g--~~~i~~ 31 (230)
-+.+.||||+||||+|+.++ ..| .+++..
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 47899999999999999999 455 555554
No 257
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.84 E-value=0.00058 Score=58.31 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+|+|+|++||||||+.+.|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999998
No 258
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.82 E-value=0.00061 Score=55.56 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||++..++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 259
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.81 E-value=0.00071 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|++||||||+.+.|..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3689999999999999999983
No 260
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.81 E-value=0.00076 Score=58.90 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hC-CCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-AN-DVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~-g~~~i~~ 31 (230)
-|.|.||||+||||+|+.++ .. +.+++..
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~~~~~~~~~v 199 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSI 199 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCCSSEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCCEEEE
Confidence 47899999999999999999 55 6655443
No 261
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.80 E-value=0.00037 Score=59.15 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 33 ~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999999
No 262
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.80 E-value=0.00067 Score=52.32 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.+.|+|++|+||||+++.++
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 38899999999999999998
No 263
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.79 E-value=0.00067 Score=54.84 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|+.|+|.|.+||||||+.+.|.
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~ 22 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALT 22 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999998
No 264
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.78 E-value=0.0007 Score=53.57 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|+|||||||++..++
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999988876
No 265
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.77 E-value=0.00047 Score=57.90 Aligned_cols=20 Identities=35% Similarity=0.365 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|+|++||||||+.+.|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 266
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.77 E-value=0.00073 Score=56.89 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.+++|.|+|||||||+.+.|.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999998
No 267
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.76 E-value=0.00065 Score=55.90 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
-+.|.|+||+||||+|+.++
T Consensus 69 ~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999887
No 268
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.76 E-value=0.00084 Score=57.04 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.+|+|.|++||||||+++.|+
T Consensus 158 ~vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHH
Confidence 479999999999999999998
No 269
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.75 E-value=0.00057 Score=57.36 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
+.|+|.|+.||||||+++.|++
T Consensus 5 ~fI~~EG~dGsGKTT~~~~La~ 26 (331)
T 1e2k_A 5 LRVYIDGPHGMGKTTTTQLLVA 26 (331)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999994
No 270
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.75 E-value=0.00093 Score=51.30 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|++||||||+.+.|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 3689999999999999999983
No 271
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.74 E-value=0.00086 Score=56.73 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.+|+|+|+|||||||+.+.|.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~ 95 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFG 95 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 272
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.70 E-value=0.0011 Score=57.96 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-+.|.|+||+||||+|+.++ ..+..++..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 47899999999999999999 566655443
No 273
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.70 E-value=0.00087 Score=58.11 Aligned_cols=20 Identities=40% Similarity=0.277 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+|+|+|++||||||+.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999987
No 274
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.69 E-value=0.00082 Score=55.28 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.+.|.|+|||||||+|+.+++
T Consensus 49 ~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999993
No 275
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.69 E-value=0.0009 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~~ 23 (230)
|..|+|.|.+|+||||+.+.|..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 57899999999999999999983
No 276
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.68 E-value=0.00093 Score=56.51 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
+.++|+|++|+||||+++.++
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~ 65 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLW 65 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999998
No 277
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.67 E-value=0.0011 Score=58.64 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
-|.|.|+||+|||++|+.++ +.+.+++..
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred cEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 47899999999999999999 577666554
No 278
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.00074 Score=59.30 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 279
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.67 E-value=0.0009 Score=56.60 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.++.|.|++||||||++..++
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999998
No 280
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.65 E-value=0.00097 Score=58.87 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.+|+|.|++||||||+++.|+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHH
Confidence 379999999999999999998
No 281
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.63 E-value=0.001 Score=54.97 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-----hCCC--cEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-----ANDV--PVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-----~~g~--~~i~~d~~ 34 (230)
.+|+|+|++||||||++..|+ +.|. .+++.|.+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 479999999999999999997 1464 45666654
No 282
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.62 E-value=0.0012 Score=51.55 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
++|+|.|.+|+||||+++.|.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~ 59 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLI 59 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 578999999999999999998
No 283
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.62 E-value=0.00074 Score=55.87 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEE
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVV 29 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i 29 (230)
.+.|+|++|+||||+|+.++ ..+..++
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 47899999999999999999 4555543
No 284
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.62 E-value=0.0015 Score=52.33 Aligned_cols=31 Identities=35% Similarity=0.515 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh---CC--CcEEehh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA---ND--VPVVDAD 32 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~---~g--~~~i~~d 32 (230)
.+++++|.+|+||||++..|+. .| ..+++.|
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4789999999999999999982 23 3456655
No 285
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.61 E-value=0.0011 Score=55.17 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEE
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVV 29 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i 29 (230)
+.|.|+||+|||++++.++ ..+..++
T Consensus 49 vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 7899999999999999999 5665543
No 286
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.60 E-value=0.0011 Score=50.71 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
++++++|++||||||++-.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999985554
No 287
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.59 E-value=0.0014 Score=54.84 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCCC--cEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----ANDV--PVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g~--~~i~~d~~ 34 (230)
.+|+|+|++|+||||++..|+ ..|. .+++.|.+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 589999999999999999998 2443 35555543
No 288
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.59 E-value=0.0011 Score=55.83 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..+.|+|+||+||||+|+.++
T Consensus 71 ~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999999
No 289
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.58 E-value=0.0012 Score=55.84 Aligned_cols=21 Identities=24% Similarity=0.094 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..+.|+|++|+||||+++.++
T Consensus 46 ~~vll~G~~G~GKT~la~~l~ 66 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIF 66 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 290
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.57 E-value=0.0015 Score=47.72 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|++.|.+|+||||+.+.|.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999998
No 291
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.56 E-value=0.0012 Score=54.76 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-hCCCcEEeh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-ANDVPVVDA 31 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~~g~~~i~~ 31 (230)
..+.+.|+||+||||+++.++ +.+..++..
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 357888899999999999999 577665544
No 292
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.56 E-value=0.0013 Score=54.55 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 293
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.56 E-value=0.0012 Score=61.87 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d 32 (230)
-|+|.|+|||||||+++.++ ..+..++..+
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 58999999999999999999 5676655543
No 294
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.56 E-value=0.0011 Score=55.80 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hC------CCcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-AN------DVPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~------g~~~i~~d 32 (230)
.++|+|++|+||||+++.++ .. +..++..+
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 58999999999999999998 32 66555443
No 295
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.0012 Score=55.41 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 026952 4 VGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~~ 23 (230)
+.+.||+|+||||+++.+++
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999993
No 296
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=96.54 E-value=0.0085 Score=52.99 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh----CCCcEEehhhhhH
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA----NDVPVVDADIIAR 36 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~----~g~~~i~~d~~~~ 36 (230)
.+|++.|..||||+|+.+.|.+ .|+.++.......
T Consensus 301 vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~ 339 (500)
T 3czp_A 301 LVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTE 339 (500)
T ss_dssp EEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCH
T ss_pred EEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCCh
Confidence 5899999999999999999993 4777777655443
No 297
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.54 E-value=0.0015 Score=55.37 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCCC--cEEehh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----ANDV--PVVDAD 32 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g~--~~i~~d 32 (230)
.+|+|+|.+|+||||++..|+ ..|. .+++.|
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 479999999999999999997 2354 355555
No 298
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=96.54 E-value=0.0013 Score=56.13 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
+.|+|.|+.||||||+++.|++
T Consensus 50 ~fIt~EG~dGsGKTT~~~~Lae 71 (376)
T 1of1_A 50 LRVYIDGPHGMGKTTTTQLLVA 71 (376)
T ss_dssp EEEEECSSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999994
No 299
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.54 E-value=0.00089 Score=56.49 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.+.|+|++|+||||+++.++
T Consensus 46 ~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999998
No 300
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.52 E-value=0.0014 Score=58.78 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCc
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVP 27 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~ 27 (230)
.++|.|||||||||+++.++ ..+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 68999999999999999999 34443
No 301
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.52 E-value=0.001 Score=59.24 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|+|++||||||+.+.|.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 302
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.51 E-value=0.0017 Score=47.72 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3689999999999999999983
No 303
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.51 E-value=0.0015 Score=52.95 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
+.|+|.|++||||||+.+.|.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999998
No 304
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.50 E-value=0.0017 Score=48.94 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|++|+||||+.+.|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999984
No 305
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.50 E-value=0.0014 Score=49.61 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|++|+||||+.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999983
No 306
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.49 E-value=0.00082 Score=51.84 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|++||||||+.+.|.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999998
No 307
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.48 E-value=0.0014 Score=57.70 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999997
No 308
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.0012 Score=55.44 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 026952 4 VGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~~ 23 (230)
+.|.|++|+||||+++.++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999983
No 309
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.47 E-value=0.0017 Score=48.02 Aligned_cols=21 Identities=38% Similarity=0.389 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 310
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.47 E-value=0.0016 Score=55.33 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 68999999999999999999
No 311
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.46 E-value=0.0015 Score=52.63 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
-|.|.|++|+|||++|+.+++
T Consensus 31 ~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999999994
No 312
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.46 E-value=0.0014 Score=56.63 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|.
T Consensus 71 ~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 79999999999999999998
No 313
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.46 E-value=0.0018 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999994
No 314
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.45 E-value=0.0016 Score=56.73 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCCCc--EEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g~~--~i~~d~~ 34 (230)
.+|+++|++||||||++..|+ ..|.. +++.|.+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 589999999999999999988 24543 5666654
No 315
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.44 E-value=0.0028 Score=50.12 Aligned_cols=21 Identities=24% Similarity=0.066 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.+++++|++||||||.+-.++
T Consensus 13 ~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 478999999999999887776
No 316
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.44 E-value=0.0026 Score=51.25 Aligned_cols=33 Identities=36% Similarity=0.360 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH----hCCCc--EEehhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADI 33 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~----~~g~~--~i~~d~ 33 (230)
|++|+|+|..|+||||++-.|+ +.|.. +++.|.
T Consensus 1 M~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 8999999999999999998887 35654 566663
No 317
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.43 E-value=0.0014 Score=56.85 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 026952 4 VGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~ 22 (230)
++|.|++||||||+.+.|.
T Consensus 45 vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp EEEECSTTSSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 8999999999999999998
No 318
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.43 E-value=0.0016 Score=58.32 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 319
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.43 E-value=0.0018 Score=57.45 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh----CCC--cEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA----NDV--PVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~----~g~--~~i~~d~~ 34 (230)
.+|+|+|++||||||++..|+. .|. .+++.|.+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 4799999999999999999982 354 45666654
No 320
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.0016 Score=54.45 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 026952 4 VGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~ 22 (230)
+.|.|+||+||||+++.++
T Consensus 61 ~ll~G~~G~GKT~la~~la 79 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALT 79 (353)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999998
No 321
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.42 E-value=0.0016 Score=56.16 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
++.|.|+|||||||++..|+
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 78999999999999999775
No 322
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.002 Score=48.88 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|++||||||+.+.|..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999984
No 323
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.42 E-value=0.0022 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|++.|.+|+||||+.+.|..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999983
No 324
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.41 E-value=0.0022 Score=46.99 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|++|+||||+.+.|.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999998
No 325
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.41 E-value=0.0028 Score=55.26 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCCCc--EEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g~~--~i~~d~~ 34 (230)
.+|+++|++||||||++..|+ +.|.. +++.|.+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 589999999999999988887 24544 5666655
No 326
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.40 E-value=0.0015 Score=53.96 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|.
T Consensus 171 iv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHS
T ss_pred eEEEECCCCCcHHHHHHHhc
Confidence 68999999999999999998
No 327
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.40 E-value=0.0019 Score=47.55 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999997
No 328
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.37 E-value=0.0019 Score=47.58 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4689999999999999999983
No 329
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.36 E-value=0.0016 Score=58.21 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 330
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.36 E-value=0.002 Score=54.16 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.+|+|+|++|+||||+++.|+
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 331
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.36 E-value=0.0022 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|++|+||||+.+.|..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999983
No 332
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.35 E-value=0.0025 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999983
No 333
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.34 E-value=0.0032 Score=51.43 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH----hCCCc--EEehhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADI 33 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~----~~g~~--~i~~d~ 33 (230)
|++|+|+|..|+||||+|-.|+ +.|.. +++.|.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 8999999999999999988887 35654 567764
No 334
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.33 E-value=0.0023 Score=53.45 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCC--CcEEeh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-AND--VPVVDA 31 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g--~~~i~~ 31 (230)
++.|.|+|||||||+|..++ +.| ..+++.
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 57899999999999999999 322 345555
No 335
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.33 E-value=0.0024 Score=52.68 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.+|+++|++|+||||++..|+
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la 119 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLA 119 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999998
No 336
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.33 E-value=0.0026 Score=47.18 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCccHHHHHHHHh
Confidence 368999999999999999998
No 337
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.32 E-value=0.0018 Score=56.40 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
-++|.|++|+||||+++.++
T Consensus 132 ~lll~Gp~G~GKTtLa~aia 151 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIG 151 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999998
No 338
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.32 E-value=0.0025 Score=47.08 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+.+|.|+.||||||+..++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999987
No 339
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.32 E-value=0.0026 Score=47.40 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|++||||||+.+.|.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 340
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.31 E-value=0.0021 Score=47.83 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999997
No 341
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.31 E-value=0.0023 Score=50.61 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
++.|+|+||+||||+|-.++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999998875
No 342
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.31 E-value=0.0027 Score=47.24 Aligned_cols=21 Identities=33% Similarity=0.268 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 343
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.31 E-value=0.002 Score=58.24 Aligned_cols=20 Identities=55% Similarity=0.788 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 344
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.30 E-value=0.0028 Score=46.54 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|.+|+||||+.+.|..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999983
No 345
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.29 E-value=0.0019 Score=57.84 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~ 46 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILA 46 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 78999999999999999998
No 346
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.29 E-value=0.0018 Score=55.14 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|..|+|.|.||+||||+.+.|.
T Consensus 1 ~~~v~IVG~pnvGKSTL~n~L~ 22 (368)
T 2dby_A 1 MLAVGIVGLPNVGKSTLFNALT 22 (368)
T ss_dssp CCSEEEECCSSSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 6789999999999999999998
No 347
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.29 E-value=0.0027 Score=52.70 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEehhh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVDADI 33 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~~d~ 33 (230)
.++|+|++|+||||+++.+. +.+..+++...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 68999999999999999999 56655565543
No 348
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.29 E-value=0.0027 Score=47.30 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999983
No 349
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.29 E-value=0.0021 Score=57.50 Aligned_cols=20 Identities=25% Similarity=0.576 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.|+
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~ 333 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLA 333 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 350
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.29 E-value=0.0024 Score=48.14 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999983
No 351
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.28 E-value=0.0028 Score=46.56 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|++.|.+|+||||+.+.|.
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999998
No 352
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.28 E-value=0.0028 Score=46.69 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 368999999999999999998
No 353
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.28 E-value=0.0018 Score=58.48 Aligned_cols=20 Identities=45% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 354
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.27 E-value=0.0024 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999983
No 355
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=96.26 E-value=0.002 Score=54.23 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHH-HHHHh
Q 026952 2 RIVGLTGGISSGKSTVS-NLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva-~~L~~ 23 (230)
+.|+|.|+.||||||++ +.|++
T Consensus 13 ~~I~iEG~~GaGKTT~~~~~L~~ 35 (341)
T 1osn_A 13 LRIYLDGAYGIGKTTAAEEFLHH 35 (341)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 47999999999999999 99994
No 356
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.26 E-value=0.0025 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
+.|+|.|.+|+||||+.+.|..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999983
No 357
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.25 E-value=0.003 Score=46.50 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|.+|+||||+.+.|.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 358
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.25 E-value=0.0026 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999983
No 359
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.24 E-value=0.0023 Score=54.20 Aligned_cols=20 Identities=40% Similarity=0.366 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
++.|.|+|||||||++..++
T Consensus 63 i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999998
No 360
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0023 Score=58.07 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILA 124 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 68999999999999999998
No 361
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0018 Score=54.01 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..+.|+|+||+|||++++.++
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~ 66 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVM 66 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 358899999999999999998
No 362
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.24 E-value=0.003 Score=47.70 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|++.|.+|+||||+.+.|.
T Consensus 23 ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 363
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.24 E-value=0.0024 Score=53.04 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH-----hCCCc--EEehhhhhHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK-----ANDVP--VVDADIIARD 37 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-----~~g~~--~i~~d~~~~~ 37 (230)
-+.|.|++|+|||++++.++ +.|.. +++..++...
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 57899999999999999987 23444 3555555443
No 364
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.23 E-value=0.0024 Score=59.73 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHH-hCCCcEEehh
Q 026952 4 VGLTGGISSGKSTVSNLFK-ANDVPVVDAD 32 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~-~~g~~~i~~d 32 (230)
|.+.||||||||.+|++++ +.+.++++.+
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e~~~~f~~v~ 543 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred EEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence 6899999999999999999 7888887763
No 365
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.23 E-value=0.0029 Score=47.11 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 366
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.22 E-value=0.0022 Score=56.34 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
-+.|.|+||+||||+++.|+
T Consensus 203 ~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHH
Confidence 46899999999999999998
No 367
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=96.22 E-value=0.028 Score=45.95 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-h---CCCcEEehhhhhH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-A---NDVPVVDADIIAR 36 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~---~g~~~i~~d~~~~ 36 (230)
.+|++.|..||||+++.+.|. . .|+.+++......
T Consensus 76 vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~ 114 (289)
T 3rhf_A 76 LLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTD 114 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCH
T ss_pred EEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCCh
Confidence 479999999999999999998 3 4677777655433
No 368
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.21 E-value=0.0033 Score=46.21 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|.+|+||||+.+.|.
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 369
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.21 E-value=0.0014 Score=54.82 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 026952 4 VGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~~ 23 (230)
+.|.|+||+|||++|+.+++
T Consensus 48 vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 78999999999999999993
No 370
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.0025 Score=57.84 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 380 iv~iiG~NGsGKSTLlk~l~ 399 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLA 399 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999998
No 371
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.19 E-value=0.0029 Score=53.75 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
|..|.|.|.+||||||+++.+.
T Consensus 33 ~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHHH
Confidence 4678999999999999999998
No 372
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.19 E-value=0.0025 Score=57.81 Aligned_cols=20 Identities=25% Similarity=0.576 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~ 403 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLA 403 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 373
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.19 E-value=0.0036 Score=46.16 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999997
No 374
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0033 Score=47.73 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~ 44 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYA 44 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHh
Confidence 479999999999999999998
No 375
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.18 E-value=0.0025 Score=52.64 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCCC--cEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----ANDV--PVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g~--~~i~~d~~ 34 (230)
.+|+++|++|+||||++..|+ ..|. .+++.|..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 578999999999999999998 2343 35555543
No 376
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.18 E-value=0.0029 Score=47.87 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 377
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.17 E-value=0.0025 Score=56.79 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLF 21 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L 21 (230)
+++|.|++||||||+++.+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6899999999999999994
No 378
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.17 E-value=0.0034 Score=47.09 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 379
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.17 E-value=0.0034 Score=51.15 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~ 22 (230)
+..|+|.|.||+||||+.+.|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~ 24 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLIT 24 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 380
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.16 E-value=0.003 Score=51.99 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
-+.|+|++|+||||+++.++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~ 67 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALA 67 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 48899999999999999998
No 381
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.16 E-value=0.0035 Score=46.60 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|.+|+||||+.+.|.
T Consensus 8 ki~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 382
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.16 E-value=0.0027 Score=53.65 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH-h---CC--CcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-A---ND--VPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~---~g--~~~i~~d 32 (230)
++.|.|+|||||||+|..++ . .| +.+++++
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 68999999999999999987 2 33 3456654
No 383
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.15 E-value=0.0034 Score=46.62 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|.+|+||||+.+.|.
T Consensus 16 ~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 384
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.15 E-value=0.002 Score=56.12 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh------CCCcEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA------NDVPVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~------~g~~~i~~d~~ 34 (230)
.+|+|+|++|+||||++..|+. ....++++|.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 4799999999999999999982 23456776654
No 385
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.14 E-value=0.0025 Score=57.88 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 68999999999999999998
No 386
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.14 E-value=0.0019 Score=58.50 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 387
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.14 E-value=0.0037 Score=47.34 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999983
No 388
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.14 E-value=0.0031 Score=48.24 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999999998
No 389
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.14 E-value=0.0034 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999998
No 390
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.13 E-value=0.0037 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 3689999999999999999983
No 391
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.12 E-value=0.0049 Score=47.27 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=25.1
Q ss_pred CeEEEEE-cCCCCcHHHHHHHHH----hCCCc--EEehh
Q 026952 1 MRIVGLT-GGISSGKSTVSNLFK----ANDVP--VVDAD 32 (230)
Q Consensus 1 m~iI~I~-G~~GSGKTTva~~L~----~~g~~--~i~~d 32 (230)
|++|+|+ +..|+||||++-.|+ +.|.. +++.|
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 8999888 558899999998887 35654 66666
No 392
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.11 E-value=0.0039 Score=46.74 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|.+|+||||+.+.|.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 393
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.11 E-value=0.003 Score=53.40 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.++
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~ 92 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMIC 92 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 394
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.11 E-value=0.0032 Score=52.02 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|+||+||||+.+.|..
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 689999999999999999983
No 395
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.10 E-value=0.0021 Score=58.19 Aligned_cols=20 Identities=45% Similarity=0.619 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 68999999999999999998
No 396
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.09 E-value=0.004 Score=47.21 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 3689999999999999999983
No 397
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.08 E-value=0.003 Score=55.04 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 159 ~~~IvG~sGsGKSTLl~~Ia 178 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMA 178 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999999
No 398
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.08 E-value=0.00044 Score=55.02 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 026952 4 VGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~ 22 (230)
++|.||+||||||+.+.++
T Consensus 30 ~~i~GpnGsGKSTll~~i~ 48 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFV 48 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4688999999999999998
No 399
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.08 E-value=0.0039 Score=45.70 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|++.|.+|+||||+.+.|.
T Consensus 2 ki~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 400
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.06 E-value=0.0013 Score=54.69 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|+|||||||+.+.|.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHhc
Confidence 68999999999999999998
No 401
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.06 E-value=0.0039 Score=46.77 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 402
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.06 E-value=0.0034 Score=52.74 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.+.|+|++|+||||+++.++
T Consensus 40 ~~ll~G~~G~GKT~la~~la 59 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLA 59 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999998
No 403
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.05 E-value=0.0036 Score=47.38 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 368999999999999999998
No 404
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.05 E-value=0.004 Score=46.56 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 368999999999999999998
No 405
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.0043 Score=46.20 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|.+|+||||+.+.|..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999983
No 406
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.03 E-value=0.0044 Score=46.20 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|.+|+||||+.+.|.
T Consensus 14 ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 407
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.03 E-value=0.0033 Score=51.53 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 026952 4 VGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~~ 23 (230)
+.|+|++|+||||+++.+++
T Consensus 41 ~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHH
Confidence 78999999999999999983
No 408
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.03 E-value=0.0018 Score=58.50 Aligned_cols=20 Identities=40% Similarity=0.503 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTT
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 68999999999999999998
No 409
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.03 E-value=0.0037 Score=52.63 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.++.|.|+|||||||+|..++
T Consensus 123 ~i~~I~G~~GsGKTtla~~la 143 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLC 143 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999998
No 410
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.03 E-value=0.0044 Score=47.33 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 411
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.02 E-value=0.0037 Score=51.95 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
++.|+|+||+||||++..++
T Consensus 70 l~li~G~pG~GKTtl~l~ia 89 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQA 89 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 412
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.02 E-value=0.0042 Score=46.78 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999983
No 413
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.01 E-value=0.0022 Score=58.20 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
+.|+|.|++||||||+.+.|.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~ 66 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALS 66 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCChHHHHHHHHh
Confidence 458999999999999999998
No 414
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.01 E-value=0.0053 Score=52.01 Aligned_cols=31 Identities=39% Similarity=0.497 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH-h---CC--CcEEehh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK-A---ND--VPVVDAD 32 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~-~---~g--~~~i~~d 32 (230)
.++.|.|+|||||||+|..++ . .| +.+++++
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 378999999999999999987 2 34 3466663
No 415
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.00 E-value=0.0047 Score=46.20 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|++.|.+|+||||+.+.|.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 416
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.99 E-value=0.0047 Score=46.77 Aligned_cols=20 Identities=40% Similarity=0.672 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|.+|+||||+.+.|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999887
No 417
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.98 E-value=0.0037 Score=52.12 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
++.|.|+|||||||+|..++
T Consensus 109 i~~i~G~~GsGKT~la~~la 128 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLS 128 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHhHHHHHHH
Confidence 78999999999999999998
No 418
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.98 E-value=0.0042 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999983
No 419
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.97 E-value=0.0037 Score=51.66 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|++|+||||+.+.|.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999987
No 420
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.97 E-value=0.0042 Score=47.26 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|++.|.+|+||||+.+.|..
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 421
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.97 E-value=0.0048 Score=47.20 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 368999999999999999998
No 422
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.96 E-value=0.0045 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSIL 43 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999999998
No 423
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.96 E-value=0.004 Score=50.57 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
-|.|.||||+|||++|..|+.
T Consensus 106 ~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999994
No 424
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.95 E-value=0.0068 Score=49.86 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH----hCCCc--EEehhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADI 33 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~----~~g~~--~i~~d~ 33 (230)
|++|+|+|..|+||||+|-.|+ +.|.. +++.|.
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 6789999999999999888887 45654 577663
No 425
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.95 E-value=0.0029 Score=56.04 Aligned_cols=21 Identities=29% Similarity=0.159 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
-|.|.|+||+|||++|+.++.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGG
T ss_pred eeEeecCchHHHHHHHHHHHH
Confidence 378999999999999999993
No 426
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.95 E-value=0.0024 Score=57.76 Aligned_cols=20 Identities=45% Similarity=0.635 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 427
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.94 E-value=0.0054 Score=46.87 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999999983
No 428
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.94 E-value=0.0034 Score=46.98 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|++|+||||+.+.|.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999997
No 429
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.93 E-value=0.0052 Score=46.19 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999998
No 430
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.93 E-value=0.0052 Score=47.39 Aligned_cols=21 Identities=24% Similarity=0.074 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
++++++|++||||||.+-.++
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a 29 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRI 29 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 589999999999999887776
No 431
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.93 E-value=0.0048 Score=47.23 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|.+|+||||+.+.|..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999983
No 432
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.92 E-value=0.0041 Score=51.44 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
-|.|.|+||+|||++|+.+.+
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCchHHHHHHHHHH
Confidence 378999999999999999983
No 433
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.91 E-value=0.0053 Score=46.38 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 434
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.91 E-value=0.0053 Score=46.32 Aligned_cols=20 Identities=25% Similarity=0.084 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|.+|+||||+.+.|.
T Consensus 16 ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998887
No 435
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.005 Score=46.77 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|.+|+||||+.+.|.
T Consensus 25 ki~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 68999999999999999998
No 436
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.89 E-value=0.0043 Score=50.95 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 026952 4 VGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~ 22 (230)
+.|.|++|+||||+++.++
T Consensus 45 ~ll~G~~G~GKt~la~~l~ 63 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLA 63 (323)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999998
No 437
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.89 E-value=0.0054 Score=45.75 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999983
No 438
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.89 E-value=0.0039 Score=56.50 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.++|.|++||||||+++.++.
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHhc
Confidence 478999999999999999993
No 439
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.89 E-value=0.0052 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999984
No 440
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.88 E-value=0.0041 Score=55.40 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+++.++
T Consensus 283 i~~i~G~~GsGKSTLl~~l~ 302 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFV 302 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 68999999999999999998
No 441
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.88 E-value=0.0037 Score=54.14 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
-|+|.|++||||||+.+.|.
T Consensus 33 ~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 37999999999999999998
No 442
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.87 E-value=0.0043 Score=47.47 Aligned_cols=21 Identities=38% Similarity=0.389 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999996
No 443
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.87 E-value=0.0058 Score=46.24 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|.+|+||||+.+.|..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999983
No 444
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.0057 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999983
No 445
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.86 E-value=0.0073 Score=52.53 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH----hC-CCc--EEehhhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK----AN-DVP--VVDADII 34 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~----~~-g~~--~i~~d~~ 34 (230)
+.+|+++|++|+||||++..|+ .. |.. +++.|..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3589999999999999998888 34 654 5666654
No 446
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.86 E-value=0.0047 Score=47.34 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|++.|++|+||||+.+.|.
T Consensus 27 ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999998
No 447
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.86 E-value=0.0048 Score=52.44 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+.+|+|++||||||+...+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999987
No 448
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.85 E-value=0.004 Score=57.95 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
-+.|.|+||+||||+|+.|+
T Consensus 203 ~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHH
Confidence 47899999999999999999
No 449
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.85 E-value=0.0061 Score=46.79 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 450
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.0063 Score=46.29 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|.+|+||||+.+.|..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999983
No 451
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.006 Score=46.01 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 452
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.83 E-value=0.0095 Score=47.16 Aligned_cols=32 Identities=16% Similarity=-0.058 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCCCc--EEehhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADI 33 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g~~--~i~~d~ 33 (230)
..|++.|++|+||||++-.++ +.|.. +++.|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 368999999999999977776 36765 456653
No 453
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.83 E-value=0.0048 Score=51.26 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.++.|.|+|||||||+|..++
T Consensus 99 ~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999998
No 454
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.0058 Score=47.12 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 368999999999999999998
No 455
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.80 E-value=0.0058 Score=46.35 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~ 29 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFV 29 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 368999999999999999998
No 456
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.80 E-value=0.0063 Score=46.08 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|.+|+||||+.+.|..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999983
No 457
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.79 E-value=0.0057 Score=45.93 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999984
No 458
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.78 E-value=0.0061 Score=46.31 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|.+|+||||+.+.|.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999998
No 459
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.78 E-value=0.006 Score=46.23 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999983
No 460
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.78 E-value=0.0065 Score=45.99 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|.+|+||||+.+.|.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999998
No 461
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.78 E-value=0.0055 Score=52.08 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
+.|+|.|++||||||+.+.|..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHC
Confidence 3589999999999999999993
No 462
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.78 E-value=0.0059 Score=52.96 Aligned_cols=33 Identities=27% Similarity=0.233 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH----hCCC--cEEehhhh
Q 026952 2 RIVGLTGGISSGKSTVSNLFK----ANDV--PVVDADII 34 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~----~~g~--~~i~~d~~ 34 (230)
.+|+++|++||||||++..|+ ..|. .+++.|..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 578999999999999999998 2343 35555543
No 463
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0061 Score=46.90 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|.+|+||||+.+.|..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999983
No 464
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.76 E-value=0.0062 Score=46.63 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 368999999999999999998
No 465
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.76 E-value=0.0058 Score=46.61 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999998
No 466
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.74 E-value=0.0055 Score=53.57 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|+|+||+||||++..++
T Consensus 205 liiI~G~pG~GKTtl~l~ia 224 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIA 224 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999987
No 467
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.74 E-value=0.0061 Score=47.01 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999998
No 468
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.74 E-value=0.0069 Score=45.93 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|.+|+||||+.+.|..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999983
No 469
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.74 E-value=0.0064 Score=46.60 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~ 29 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFS 29 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999998
No 470
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.74 E-value=0.0063 Score=47.23 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.+.+|+|+.||||||+..++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 367899999999999999987
No 471
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.73 E-value=0.0064 Score=50.31 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|+|.||+||||+.+.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999999983
No 472
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.73 E-value=0.0067 Score=48.50 Aligned_cols=21 Identities=33% Similarity=0.378 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 368999999999999999998
No 473
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.72 E-value=0.0065 Score=49.39 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+||||||+.+.|.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~ 24 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLT 24 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999998
No 474
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.72 E-value=0.0065 Score=46.93 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|.+|+||||+.+.|..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999983
No 475
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.71 E-value=0.0054 Score=58.41 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|.|++||||||+.+.|+
T Consensus 463 ~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999998
No 476
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.71 E-value=0.0067 Score=46.16 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999973
No 477
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.70 E-value=0.0051 Score=45.80 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|++.|.+|+||||+.+.|..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999984
No 478
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.69 E-value=0.0069 Score=48.80 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~ 26 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 479
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.67 E-value=0.008 Score=45.78 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 480
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.67 E-value=0.0036 Score=46.88 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=9.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEEECCCCC----------
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999997
No 481
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.66 E-value=0.0071 Score=46.28 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999983
No 482
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.65 E-value=0.0061 Score=50.59 Aligned_cols=30 Identities=20% Similarity=0.100 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hC--CCcEEehh
Q 026952 3 IVGLTGGISSGKSTVSNLFK-AN--DVPVVDAD 32 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~--g~~~i~~d 32 (230)
+++|+|++|+||||+++.+. +. ...+++..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 68999999999999999998 32 33455544
No 483
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.65 E-value=0.0076 Score=46.55 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 3689999999999999999983
No 484
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.64 E-value=0.0063 Score=50.08 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
+.|+|.|.+||||||+.+.|..
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g 46 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVG 46 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHC
Confidence 4699999999999999999983
No 485
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.62 E-value=0.0061 Score=52.31 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|+||+||||+.+.|..
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 689999999999999999984
No 486
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.62 E-value=0.0074 Score=46.78 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|.+|+||||+.+.|.
T Consensus 36 ki~vvG~~~vGKSsli~~l~ 55 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFA 55 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 487
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.62 E-value=0.0061 Score=46.07 Aligned_cols=21 Identities=38% Similarity=0.248 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~ 42 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLK 42 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999998
No 488
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.62 E-value=0.0024 Score=59.96 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcE
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPV 28 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~ 28 (230)
.+.|.|+|||||||+|+.++ ..+..+
T Consensus 513 ~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred eeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 36789999999999999999 444433
No 489
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.59 E-value=0.0036 Score=57.45 Aligned_cols=19 Identities=47% Similarity=0.522 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLF 21 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L 21 (230)
+++|.|++||||||+.+.+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 6899999999999999754
No 490
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.58 E-value=0.008 Score=46.22 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
.|+|.|.+|+||||+.+.|.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYT 51 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 68999999999999999998
No 491
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.57 E-value=0.0061 Score=56.61 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH-hCCCcEEe
Q 026952 3 IVGLTGGISSGKSTVSNLFK-ANDVPVVD 30 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~-~~g~~~i~ 30 (230)
-+.|.|+||+|||++|+.++ ..+.+++.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~ 518 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEE
Confidence 48899999999999999999 45655443
No 492
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.007 Score=45.85 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
..|+|.|.+|+||||+.+.|.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~ 39 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYA 39 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999998
No 493
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.55 E-value=0.0082 Score=49.56 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 026952 3 IVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~~ 23 (230)
.|+|.|.||+||||+.+.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999983
No 494
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.53 E-value=0.0068 Score=56.42 Aligned_cols=20 Identities=35% Similarity=0.295 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 026952 3 IVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~ 22 (230)
+++|+||+||||||+.+.++
T Consensus 578 i~~I~GpNGsGKSTlLr~ia 597 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTA 597 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 68999999999999999987
No 495
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.53 E-value=0.0069 Score=54.62 Aligned_cols=27 Identities=37% Similarity=0.455 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH----hCCCcEE
Q 026952 3 IVGLTGGISSGKSTVSNLFK----ANDVPVV 29 (230)
Q Consensus 3 iI~I~G~~GSGKTTva~~L~----~~g~~~i 29 (230)
+++|+|+|||||||++..+. ..|..++
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl 236 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVG 236 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 68899999999999988887 2555443
No 496
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.52 E-value=0.0085 Score=45.93 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
..|+|.|.+|+||||+.+.|..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 3689999999999999999983
No 497
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.50 E-value=0.0083 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 026952 2 RIVGLTGGISSGKSTVSNLFKA 23 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~~ 23 (230)
.+|+|.|+.|.||||+|+.+++
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999983
No 498
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.50 E-value=0.0079 Score=53.97 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 026952 2 RIVGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 2 ~iI~I~G~~GSGKTTva~~L~ 22 (230)
.+|+|+|++|+||||+|+.++
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999986
No 499
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.47 E-value=0.0086 Score=47.23 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH----hCCCc--EEehhh
Q 026952 1 MRIVGLTGGISSGKSTVSNLFK----ANDVP--VVDADI 33 (230)
Q Consensus 1 m~iI~I~G~~GSGKTTva~~L~----~~g~~--~i~~d~ 33 (230)
|+ |+|+|..|+||||++-.|+ +.|.. +++.|.
T Consensus 1 mk-I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MK-LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CE-EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CE-EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 55 6669999999999999988 35654 566654
No 500
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.47 E-value=0.01 Score=50.63 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 026952 4 VGLTGGISSGKSTVSNLFK 22 (230)
Q Consensus 4 I~I~G~~GSGKTTva~~L~ 22 (230)
++|.|++||||||+++.+.
T Consensus 38 ~~i~G~~G~GKs~~~~~~~ 56 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLL 56 (392)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999997
Done!