Query 026953
Match_columns 230
No_of_seqs 209 out of 1119
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02619 nucleoside-diphosphat 100.0 3.8E-64 8.3E-69 443.7 15.2 210 1-216 1-215 (238)
2 PRK14542 nucleoside diphosphat 100.0 8.2E-41 1.8E-45 274.2 12.3 125 89-217 1-129 (137)
3 COG0105 Ndk Nucleoside diphosp 100.0 1.1E-40 2.3E-45 271.6 10.5 123 89-215 2-128 (135)
4 PRK14541 nucleoside diphosphat 100.0 4E-40 8.6E-45 270.9 12.0 124 89-216 1-128 (140)
5 PTZ00093 nucleoside diphosphat 100.0 9.7E-40 2.1E-44 271.1 12.0 124 89-216 2-129 (149)
6 PRK14540 nucleoside diphosphat 100.0 1.5E-39 3.2E-44 265.3 12.1 124 89-216 2-129 (134)
7 cd04415 NDPk7A Nucleoside diph 100.0 2.1E-39 4.6E-44 263.7 11.4 120 90-215 1-127 (131)
8 PRK14545 nucleoside diphosphat 100.0 2.6E-39 5.6E-44 265.7 11.9 125 88-216 2-130 (139)
9 PRK00668 ndk mulitfunctional n 100.0 4.7E-39 1E-43 261.7 12.0 125 89-217 1-129 (134)
10 cd04413 NDPk_I Nucleoside diph 100.0 1.4E-38 3E-43 257.7 12.1 123 90-216 1-127 (130)
11 PLN02931 nucleoside diphosphat 100.0 1.8E-38 4E-43 270.5 12.4 127 86-216 26-159 (177)
12 cd04412 NDPk7B Nucleoside diph 100.0 2.8E-38 6.1E-43 257.3 12.1 123 90-216 1-131 (134)
13 cd00595 NDPk Nucleoside diphos 100.0 4.4E-38 9.6E-43 255.0 12.0 122 90-215 1-129 (133)
14 cd04418 NDPk5 Nucleoside dipho 100.0 4.7E-38 1E-42 255.8 11.5 121 90-216 1-128 (132)
15 cd04416 NDPk_TX NDP kinase dom 100.0 4.3E-38 9.4E-43 255.2 11.2 122 90-216 1-129 (132)
16 PRK14543 nucleoside diphosphat 100.0 5.9E-38 1.3E-42 265.7 11.3 127 86-216 2-147 (169)
17 cd04414 NDPk6 Nucleoside dipho 100.0 1.1E-37 2.3E-42 254.6 12.2 123 90-216 1-131 (135)
18 smart00562 NDK These are enzym 100.0 2.4E-36 5.3E-41 244.6 11.9 123 90-216 1-127 (135)
19 PF00334 NDK: Nucleoside dipho 100.0 1.8E-36 4E-41 245.1 8.9 123 90-216 1-127 (135)
20 PRK14544 nucleoside diphosphat 100.0 1E-34 2.2E-39 248.7 11.3 124 88-215 2-172 (183)
21 KOG0888 Nucleoside diphosphate 100.0 8.6E-35 1.9E-39 243.5 6.8 127 89-223 5-138 (156)
22 COG1799 Uncharacterized protei 61.5 19 0.00042 31.0 5.2 46 87-136 70-115 (167)
23 PF07576 BRAP2: BRCA1-associat 49.2 13 0.00029 29.6 2.1 17 129-145 63-79 (110)
24 PF04472 DUF552: Protein of un 38.9 69 0.0015 23.1 4.4 44 93-140 1-44 (73)
25 PF13673 Acetyltransf_10: Acet 36.6 1.5E+02 0.0032 21.5 6.1 46 91-140 67-115 (117)
26 PF01408 GFO_IDH_MocA: Oxidore 31.5 1.6E+02 0.0036 21.9 5.7 50 88-141 61-110 (120)
27 TIGR03738 PRTRC_C PRTRC system 29.6 31 0.00066 25.6 1.2 29 126-159 21-49 (66)
28 PF14454 Prok_Ub: Prokaryotic 28.4 51 0.0011 24.2 2.2 28 127-159 23-50 (65)
29 cd00384 ALAD_PBGS Porphobilino 28.3 40 0.00087 31.9 2.1 50 91-142 149-198 (314)
30 PRK09283 delta-aminolevulinic 28.3 50 0.0011 31.4 2.7 67 72-142 140-206 (323)
31 PF13788 DUF4180: Domain of un 25.8 1.1E+02 0.0024 24.8 3.9 54 90-143 35-98 (113)
32 cd04880 ACT_AAAH-PDT-like ACT 25.2 42 0.00091 23.7 1.3 33 93-127 2-34 (75)
33 TIGR00640 acid_CoA_mut_C methy 24.9 1.2E+02 0.0027 24.5 4.2 72 92-165 6-90 (132)
34 PF04015 DUF362: Domain of unk 24.5 1.7E+02 0.0038 24.6 5.2 47 94-140 2-60 (206)
35 PF03698 UPF0180: Uncharacteri 23.3 81 0.0017 24.0 2.6 25 100-125 5-29 (80)
36 PRK13384 delta-aminolevulinic 23.3 60 0.0013 30.8 2.3 65 74-142 144-208 (322)
37 PF04339 DUF482: Protein of un 23.0 1.7E+02 0.0036 28.1 5.3 53 111-163 193-257 (370)
38 cd04823 ALAD_PBGS_aspartate_ri 22.6 55 0.0012 31.0 1.9 49 92-142 155-203 (320)
39 PHA02114 hypothetical protein 21.6 1.2E+02 0.0025 24.6 3.3 61 63-126 57-118 (127)
40 COG3885 Uncharacterized conser 20.7 1.3E+02 0.0028 27.7 3.7 54 90-143 39-97 (261)
41 PF07858 LEH: Limonene-1,2-epo 20.4 48 0.001 27.0 0.9 11 218-228 106-116 (125)
No 1
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=3.8e-64 Score=443.72 Aligned_cols=210 Identities=69% Similarity=0.928 Sum_probs=201.0
Q ss_pred CchHHHHHhhhHHHHHhhhhhcccccccccchhhhhhhhhhccCCccchhhhccc-cCCccchhhhhhhhhhhhhHhhhh
Q 026953 1 MSSQIVRSASRAATARSLLSASKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGR-AGSSTASRSWLSGAIAIPAAAYTL 79 (230)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (230)
|+|||||+++|+ ||++|+++++++|+.+||++++++++++++|.|+++|+|++ +++++++++|+++++++|||+||+
T Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (238)
T PLN02619 1 MSSQICRSASRA--ARSLLSSAKNASFLSEGRAVAAAAAVSAGGKPPLLASAFGRATGSSTASAQWISGALALPAAVYML 78 (238)
T ss_pred CchHHHHHHHHH--HHHHHHHHhhhhhhhcchHHHHHHHHHcCCCCchHHHHHHhhcCCCchHHHHHHHhhcchhhhhhc
Confidence 899999999999 99999999999999999999999999999999999999988 899999999999999999999999
Q ss_pred hhhhhhhhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEE
Q 026953 80 QEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVI 159 (230)
Q Consensus 80 ~~~~~l~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvv 159 (230)
|+|+.++..+|+||+|||||++++|++|+||++|+++||+|+++||++||++++++||.+|+|+|||++|++||+|||++
T Consensus 79 ~~~~~~a~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvv 158 (238)
T PLN02619 79 QEQEAHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVV 158 (238)
T ss_pred cccccccchhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 160 AMVGISTLYYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 160 ALvL~g~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+|+|.|+ |+ +..||.++||+ ...|+ ||++||++.++|+|||||++|++++|.+
T Consensus 159 amvL~Ge-na---V~~~R~LiGpTdP~~A~PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI~ 215 (238)
T PLN02619 159 AMVWEGE-GV---IKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIN 215 (238)
T ss_pred EEEEECC-cH---HHHHHHHhCCCCccccCCCcchhhhcccccceeeecCCCHHHHHHHHH
Confidence 9999996 55 56678888887 45687 9999999999999999999999999974
No 2
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=8.2e-41 Score=274.24 Aligned_cols=125 Identities=32% Similarity=0.469 Sum_probs=116.8
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||++|+++|||++|++||+|||+++|+|.|+ |
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~-n 79 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERD-N 79 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCC-C
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhcc
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRRS 217 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~~ 217 (230)
+ ++.||.++||+ .+.|+ ||++||.+.++|+|||||++|+|++|-..
T Consensus 80 a---v~~~R~l~Gpt~p~~A~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~ 129 (137)
T PRK14542 80 A---VLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSDANAALEISF 129 (137)
T ss_pred H---HHHHHHHhCCCCchhCCCCCchHHhcCcccceeEECCCCHHHHHHHHHH
Confidence 5 56678888887 56687 99999999999999999999999999743
No 3
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=271.58 Aligned_cols=123 Identities=44% Similarity=0.656 Sum_probs=114.2
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||+|+++++|+||++++++||+|+++||+++++++|++||.+|+|+|||++||+||+|||+++|+|.|+ |
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe-~ 80 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGE-N 80 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecH-h
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999997 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhh
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQR 215 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r 215 (230)
++ ..+|.+.|.+ .+.|+ ||++||.+..+|.|||||+||+|++|-
T Consensus 81 ai---~~~R~l~GaTnp~~A~pGTIRgdfa~~~~~N~vHgSDs~esA~rEI 128 (135)
T COG0105 81 AI---SVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSPESAEREI 128 (135)
T ss_pred HH---HHHHHHHCCCCcccCCCCeEeeehhcccCcceEEccCCHHHHhHHh
Confidence 54 4445555554 67888 999999999999999999999999886
No 4
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=4e-40 Score=270.94 Aligned_cols=124 Identities=35% Similarity=0.475 Sum_probs=116.3
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|+|+|||++|++||+||||++|+|.|+ |
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~-n 79 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKE-N 79 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecC-c
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+ .+.|+ ||++||++.++|+|||||++|+|++|.+
T Consensus 80 a---v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vHgSds~e~A~~Ei~ 128 (140)
T PRK14541 80 A---VADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDSAENAAIEAG 128 (140)
T ss_pred H---HHHHHHHhCCCCchhCCCCCchHHhcccccceeEECCCCHHHHHHHHH
Confidence 5 56678888887 56687 9999999999999999999999999974
No 5
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=9.7e-40 Score=271.12 Aligned_cols=124 Identities=43% Similarity=0.690 Sum_probs=116.2
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
.|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||++|+|+|||++|++||+|||+++|+|.|+ |
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~-n 80 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGK-N 80 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCC-C
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+ .+.|+ ||++||++.++|+|||||++|+|++|..
T Consensus 81 a---v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~Sds~e~A~~Ei~ 129 (149)
T PTZ00093 81 V---VKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSVESAKREIA 129 (149)
T ss_pred H---HHHHHHHhCCCCccccCCCcchhhhccccccceeecCCCHHHHHHHHH
Confidence 5 56678888887 45577 9999999999999999999999999974
No 6
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.5e-39 Score=265.35 Aligned_cols=124 Identities=34% Similarity=0.562 Sum_probs=116.3
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
.|+||+|||||+++++++|+||++|+++||.|+++|+++||+++|++||.+|+|+|||++|++||+|||+++|+|.|+ |
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~-n 80 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGE-N 80 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCC-C
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ ++.||.++||+ .+.|+ ||++||.+.++|+|||||++|+|++|.+
T Consensus 81 a---v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~Sds~~~a~~E~~ 129 (134)
T PRK14540 81 A---ISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDSKESAEREIK 129 (134)
T ss_pred h---HHHHHHHhCCCCcccCCCCcchhhhcccccceeEECCCCHHHHHHHHH
Confidence 5 56678888887 45687 9999999999999999999999999973
No 7
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=2.1e-39 Score=263.72 Aligned_cols=120 Identities=28% Similarity=0.432 Sum_probs=112.2
Q ss_pred ceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeeccc
Q 026953 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLYY 169 (230)
Q Consensus 90 E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n~ 169 (230)
|+||+|||||++++ +|+||++|+++||+|+++|+++||+++|++||++|+|+|||++|++||+|||+++|+|.|+ |+
T Consensus 1 erTl~iIKPdav~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~-na 77 (131)
T cd04415 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGD-DA 77 (131)
T ss_pred CeEEEEECcHHHHh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECC-cH
Confidence 68999999999986 8999999999999999999999999999999999999999999999999999999999996 55
Q ss_pred ccchhhhhhhccCc---CC---CCc-ccccccCCcCccccccCCChhchHhhh
Q 026953 170 LFDINLFSLLKHST---FA---GMG-RRGSYYVWSQTHWSHRSSEIRTWNNQR 215 (230)
Q Consensus 170 l~~~~~~r~~~gp~---l~---gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r 215 (230)
+..||.++||+ .+ .|+ ||++||.+.++|+|||||++|++++|.
T Consensus 78 ---v~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~~Ei 127 (131)
T cd04415 78 ---ISEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAAREL 127 (131)
T ss_pred ---HHHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHHHHHHHH
Confidence 56778888887 23 577 999999999999999999999999986
No 8
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.6e-39 Score=265.71 Aligned_cols=125 Identities=30% Similarity=0.400 Sum_probs=116.2
Q ss_pred ccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeec
Q 026953 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTL 167 (230)
Q Consensus 88 ~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~ 167 (230)
..|+||+|||||+++++++|+||++|+++||+|+++|+++||+++|++||.+|+|+|||++|++||+|||+++|+|.|+
T Consensus 2 ~~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~- 80 (139)
T PRK14545 2 AGNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKE- 80 (139)
T ss_pred CcceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecC-
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 168 YYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 168 n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
|+ +..||.++||+ .+.|+ ||++||.+.++|+|||||++|+|++|..
T Consensus 81 na---v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei~ 130 (139)
T PRK14545 81 NA---VEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDSDENAQIEGA 130 (139)
T ss_pred CH---HHHHHHHhCCCCcccCCCCChhHHhcccccceeEECCCCHHHHHHHHH
Confidence 55 55677888886 45677 9999999999999999999999999973
No 9
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=4.7e-39 Score=261.69 Aligned_cols=125 Identities=45% Similarity=0.631 Sum_probs=116.3
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|+|+|||++|++||+|||+++|+|.|+ |
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~-n 79 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGE-N 79 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCc-h
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhcc
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRRS 217 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~~ 217 (230)
+ ++.||.++||+ .+.|+ ||++||.+.++|+|||||++|+|++|.+.
T Consensus 80 a---v~~~r~l~Gp~~p~~a~p~siR~~~g~~~~~N~vH~sds~~~a~~Ei~~ 129 (134)
T PRK00668 80 A---IAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSDSPESAAREIAL 129 (134)
T ss_pred H---HHHHHHHhCCCCccccCCCcchhhhccccccccEECCCCHHHHHHHHHH
Confidence 5 56678888887 35676 99999999999999999999999999743
No 10
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=1.4e-38 Score=257.72 Aligned_cols=123 Identities=44% Similarity=0.672 Sum_probs=114.7
Q ss_pred ceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeeccc
Q 026953 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLYY 169 (230)
Q Consensus 90 E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n~ 169 (230)
|+||+|||||++.++++|+||++|+++||+|+++|+++|++++|++||++|+|+|||++|++||+||||++|+|.|+ |+
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~-na 79 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGE-NA 79 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCC-cH
Confidence 68999999999998889999999999999999999999999999999999999999999999999999999999996 55
Q ss_pred ccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 170 LFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 170 l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+..||.++||+ .+.|+ ||++||++.++|+|||||++++|++|.+
T Consensus 80 ---v~~~r~l~Gp~~~~~a~p~slR~~~G~~~~~NavH~sd~~~~a~~E~~ 127 (130)
T cd04413 80 ---VKTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSDSVESAEREIA 127 (130)
T ss_pred ---HHHHHHHhCCCCccccCCCCchhhhcccccccceECCCCHHHHHHHHH
Confidence 56678888887 34576 9999999999999999999999999874
No 11
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=1.8e-38 Score=270.54 Aligned_cols=127 Identities=26% Similarity=0.311 Sum_probs=117.3
Q ss_pred hhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEe
Q 026953 86 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGIS 165 (230)
Q Consensus 86 ~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g 165 (230)
.+..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||++|+|+|||++|++||+|||+++|+|.|
T Consensus 26 ~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g 105 (177)
T PLN02931 26 ASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEK 105 (177)
T ss_pred CCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEec
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccchhhhhhhccCc---CC---CCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 166 TLYYLFDINLFSLLKHST---FA---GMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 166 ~~n~l~~~~~~r~~~gp~---l~---gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ |+ +..||.++||+ .+ .|+ ||++||.+.++|+|||||++|+|++|.+
T Consensus 106 ~-na---V~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~~Ei~ 159 (177)
T PLN02931 106 E-NA---VSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREIS 159 (177)
T ss_pred C-CH---HHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHHHHHHHHH
Confidence 6 55 56778888887 23 477 9999999999999999999999999973
No 12
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=2.8e-38 Score=257.32 Aligned_cols=123 Identities=21% Similarity=0.235 Sum_probs=114.8
Q ss_pred ceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCC-CChHHHHHHhccCcEEEEEEEeecc
Q 026953 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKER-PFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 90 E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gk-pff~~LV~~MtSGPvvALvL~g~~n 168 (230)
++||+|||||++.+|++|+||++|+++||+|+++||++||++++++||++|+|+ |||++|++||+|||+++|+|.|+ |
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~-n 79 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGE-N 79 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECC-c
Confidence 589999999999999999999999999999999999999999999999999999 99999999999999999999996 5
Q ss_pred cccchhhhhhhccCcC---C---CCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHSTF---A---GMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~l---~---gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+- + .|+ ||++||++.++|+|||||++|++++|.+
T Consensus 80 a---v~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~~e~~ 131 (134)
T cd04412 80 A---VKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELK 131 (134)
T ss_pred H---HHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHHHHHHHHH
Confidence 5 667788899872 2 576 9999999999999999999999999973
No 13
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=4.4e-38 Score=255.00 Aligned_cols=122 Identities=34% Similarity=0.492 Sum_probs=114.0
Q ss_pred ceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeeccc
Q 026953 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLYY 169 (230)
Q Consensus 90 E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n~ 169 (230)
|+||+|||||++++|++|+||++|+++||+|+++|+++||+++|++||.+|+++|||++|+++|+|||+++|+|.|+ |+
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~-~a 79 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKD-NA 79 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecC-Ch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999996 55
Q ss_pred ccchhhhhhhccCcC------CCCc-ccccccCCcCccccccCCChhchHhhh
Q 026953 170 LFDINLFSLLKHSTF------AGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQR 215 (230)
Q Consensus 170 l~~~~~~r~~~gp~l------~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r 215 (230)
+..||.++||+. ..|+ ||++||.+.++|+|||||+++++++|.
T Consensus 80 ---v~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~~Ei 129 (133)
T cd00595 80 ---VGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREI 129 (133)
T ss_pred ---HHHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHHHHHHHH
Confidence 566788899872 2466 999999999999999999999999986
No 14
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=4.7e-38 Score=255.80 Aligned_cols=121 Identities=29% Similarity=0.347 Sum_probs=112.4
Q ss_pred ceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeeccc
Q 026953 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLYY 169 (230)
Q Consensus 90 E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n~ 169 (230)
|+||+|||||++++ +|+||++|+++||+|+++||++||+++|++||++|+|++||++|++||+|||+++|+|.|+ |+
T Consensus 1 e~Tl~iIKPda~~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~-~a 77 (132)
T cd04418 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARH-NA 77 (132)
T ss_pred CeEEEEECcHHHhh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecC-CH
Confidence 68999999999987 8999999999999999999999999999999999999999999999999999999999996 55
Q ss_pred ccchhhhhhhccCc---CC---CCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 170 LFDINLFSLLKHST---FA---GMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 170 l~~~~~~r~~~gp~---l~---gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
++.||.++||+ .+ .|+ ||++||.+.++|+|||||++|+|++|..
T Consensus 78 ---V~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~~a~~Ei~ 128 (132)
T cd04418 78 ---ISYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIR 128 (132)
T ss_pred ---HHHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHHHHHHHHH
Confidence 56678888887 33 476 9999999999999999999999999863
No 15
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=4.3e-38 Score=255.21 Aligned_cols=122 Identities=27% Similarity=0.364 Sum_probs=113.4
Q ss_pred ceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeeccc
Q 026953 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLYY 169 (230)
Q Consensus 90 E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n~ 169 (230)
|+||+|||||++++ ++|+|+++|+++||.|+++|+++||+++|++||.+|+|+|||++|++||+|||+++|+|.|+ |+
T Consensus 1 e~Tl~iIKPdav~~-~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~-~a 78 (132)
T cd04416 1 EYTLALIKPDAVAE-KKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKE-NA 78 (132)
T ss_pred CeEEEEEChHHHHH-HHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCC-CH
Confidence 68999999999987 78999999999999999999999999999999999999999999999999999999999996 55
Q ss_pred ccchhhhhhhccCcC---C---CCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 170 LFDINLFSLLKHSTF---A---GMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 170 l~~~~~~r~~~gp~l---~---gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+..||.++||+- + .|+ ||++||.+.++|+|||||++|++++|.+
T Consensus 79 ---v~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~~a~~Ei~ 129 (132)
T cd04416 79 ---VEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEID 129 (132)
T ss_pred ---HHHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHHHHHHHHH
Confidence 567888899872 2 577 9999999999999999999999999863
No 16
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=5.9e-38 Score=265.71 Aligned_cols=127 Identities=32% Similarity=0.471 Sum_probs=116.8
Q ss_pred hhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHH-----HhcCCCChHHHHHHhccCcEEE
Q 026953 86 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYH-----DLKERPFFNGLCEFLSSGPVIA 160 (230)
Q Consensus 86 ~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~-----~~~gkpff~~LV~~MtSGPvvA 160 (230)
....|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||. +|+|+|||++|++||+|||+++
T Consensus 2 ~~~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~va 81 (169)
T PRK14543 2 STLIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFV 81 (169)
T ss_pred CCccceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEE
Confidence 34689999999999999999999999999999999999999999999999995 8999999999999999999999
Q ss_pred EEEEeecccccchhhhhhhccCc---CCCCc-ccccccCC----------cCccccccCCChhchHhhhc
Q 026953 161 MVGISTLYYLFDINLFSLLKHST---FAGMG-RRGSYYVW----------SQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 161 LvL~g~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d----------~~rNaVHgSDs~Eda~~~r~ 216 (230)
|+|.|+ |+ +..||.++||+ .+.|+ ||++||++ .++|+|||||++|+|++|-+
T Consensus 82 lvl~g~-na---I~~~R~l~Gpt~p~~a~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~rEi~ 147 (169)
T PRK14543 82 FVVEGV-ES---VEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDALREIP 147 (169)
T ss_pred EEEECC-CH---HHHHHHHhCCCCccccCCCcchhhhcccccccccccccceeeEEECCCCHHHHHHHHH
Confidence 999996 55 66678888887 46677 99999997 79999999999999988863
No 17
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=1.1e-37 Score=254.55 Aligned_cols=123 Identities=25% Similarity=0.309 Sum_probs=112.3
Q ss_pred ceeEEEEcCccccCCcH-HHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 90 ERTFIAIKPDGVQRGLI-SEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 90 E~TLaIIKPdav~~g~v-GeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
|+||+|||||++++|++ |.|++.|+++||+|+++||++||+++|++||++|+|++||++|++||+|||+++|+|.|+ |
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~-n 79 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHE-N 79 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcC-C
Confidence 68999999999999877 567777889999999999999999999999999999999999999999999999999996 5
Q ss_pred cccchhhhhhhccCcC---C---CCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHSTF---A---GMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~l---~---gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+. + .|+ ||++||++.++|+|||||++|+|++|.+
T Consensus 80 a---V~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~ 131 (135)
T cd04414 80 A---IKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQREIA 131 (135)
T ss_pred H---HHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHHHHHHHHH
Confidence 5 566788888872 2 576 9999999999999999999999999873
No 18
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=2.4e-36 Score=244.61 Aligned_cols=123 Identities=44% Similarity=0.634 Sum_probs=114.8
Q ss_pred ceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeeccc
Q 026953 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLYY 169 (230)
Q Consensus 90 E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n~ 169 (230)
|+||+|||||++.++++|+||++|+++||.|+++||++||++++++||.+|+|+|||++|+++|+|||+++|+|.|+ |+
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~-na 79 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGE-DA 79 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecC-CH
Confidence 68999999999998889999999999999999999999999999999999999999999999999999999999996 55
Q ss_pred ccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 170 LFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 170 l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+..|+.++||+ ...|+ ||++||.+.++|+|||||+++++++|.+
T Consensus 80 ---v~~~r~l~Gp~~~~~~~p~slR~~~G~~~~~N~vH~sd~~~~a~~e~~ 127 (135)
T smart00562 80 ---VKTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSDSPESAEREIA 127 (135)
T ss_pred ---HHHHHHHhCCCChhhcCCcchHHhhcccccceeEECCCCHHHHHHHHH
Confidence 56678888887 34576 9999999999999999999999999974
No 19
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=1.8e-36 Score=245.07 Aligned_cols=123 Identities=36% Similarity=0.502 Sum_probs=107.6
Q ss_pred ceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeeccc
Q 026953 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLYY 169 (230)
Q Consensus 90 E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n~ 169 (230)
|+||+|||||++.++++|+||++|+++||.|+++|+++||++++++||.+|+|+++|+.|++||+|||+++|+|.|+ |+
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~-~a 79 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGE-NA 79 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEEST-TH
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecc-hh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999996 55
Q ss_pred ccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 170 LFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 170 l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+..|+.++||+ .+.|+ ||++||.+.++|+|||||+++++.+|..
T Consensus 80 ---v~~~r~l~Gp~dp~~a~p~slR~~~g~~~~~N~vH~sd~~~~a~rE~~ 127 (135)
T PF00334_consen 80 ---VEKWRQLCGPTDPEEAAPGSLRARYGTDIIRNAVHGSDSPEDAEREIA 127 (135)
T ss_dssp ---HHHHHHHH--SSGGGSSTTSHHHHH-SSSTG-SEEE-SSHHHHHHHHH
T ss_pred ---hHHHHHhcCCcchhhhccccchhceeecCCCCeEECCCCHHHHHHHHH
Confidence 55567777776 57787 9999999999999999999999999984
No 20
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1e-34 Score=248.69 Aligned_cols=124 Identities=34% Similarity=0.514 Sum_probs=113.9
Q ss_pred ccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHh---------------------------
Q 026953 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDL--------------------------- 140 (230)
Q Consensus 88 ~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~--------------------------- 140 (230)
..|+||+|||||+++++++|+||++|++.||+|+++||+++|+++|++||.+|
T Consensus 2 ~~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (183)
T PRK14544 2 PIERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLG 81 (183)
T ss_pred CcceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccccccc
Confidence 47899999999999999999999999999999999999999999999999954
Q ss_pred ------cCCCChHHHHHHhccCcEEEEEEEeecccccchhhhhhhccCc---CCCCc-ccccccCCc----------Ccc
Q 026953 141 ------KERPFFNGLCEFLSSGPVIAMVGISTLYYLFDINLFSLLKHST---FAGMG-RRGSYYVWS----------QTH 200 (230)
Q Consensus 141 ------~gkpff~~LV~~MtSGPvvALvL~g~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~----------~rN 200 (230)
.|++||++|++||+||||++|+|.|+ |+ ++.||.++||+ .+.|+ ||++||.+. ++|
T Consensus 82 ~~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~-na---V~~~R~liGpt~p~~A~P~TIR~~fg~~~~~~~~~~~~~~~N 157 (183)
T PRK14544 82 TDDPVEVGKKVKESLVKYMTSGPIVAMVLKGN-RA---VEVVRKLVGPTSPHKAPPGTIRGDYSIDSPDLAAEEGRVVYN 157 (183)
T ss_pred cccccccCCchhHHHHHHhccCCEEEEEEECC-CH---HHHHHHHhCCCCccccCCCCchhhhcccccccccccccceee
Confidence 78999999999999999999999996 55 66778888887 46687 999999984 899
Q ss_pred ccccCCChhchHhhh
Q 026953 201 WSHRSSEIRTWNNQR 215 (230)
Q Consensus 201 aVHgSDs~Eda~~~r 215 (230)
+|||||++|+|++|-
T Consensus 158 avH~Sds~e~A~rEi 172 (183)
T PRK14544 158 LVHASDSPEEAEREI 172 (183)
T ss_pred EEECCCCHHHHHHHH
Confidence 999999999999986
No 21
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.6e-35 Score=243.48 Aligned_cols=127 Identities=49% Similarity=0.742 Sum_probs=116.7
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||++||||++++|++|+||.+++++||+|+++|+++++++++++||.+|+++|||+.||.||+|||++||+|.|. |
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~-~ 83 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGD-N 83 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCC-C
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cccchhhhhhhccCcC---C---CCc-ccccccCCcCccccccCCChhchHhhhcccceeee
Q 026953 169 YLFDINLFSLLKHSTF---A---GMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRRSSCCCWK 223 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~l---~---gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~~~~~~~~ 223 (230)
+ +..++.+.|++- + .|+ ||++||++..+|++||||+.++|++|. ++|=
T Consensus 84 ~---V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~sA~rEi----~~~F 138 (156)
T KOG0888|consen 84 V---VQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVESAEREI----KLWF 138 (156)
T ss_pred H---HHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHHHHHHH----HhcC
Confidence 5 455667888872 2 466 999999999999999999999999997 5663
No 22
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.47 E-value=19 Score=31.03 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=35.6
Q ss_pred hccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhH
Q 026953 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKH 136 (230)
Q Consensus 87 ~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eF 136 (230)
.....++++++|..+.+ ..+|.+.|.+.--.+++ +..|++++|++.
T Consensus 70 ~~~~s~iv~~ePr~yed--a~~ia~~lk~~k~Vvin--l~~m~~~qArRi 115 (167)
T COG1799 70 AQDSSKIVLLEPRKYED--AQEIADYLKNRKAVVIN--LQRMDPAQARRI 115 (167)
T ss_pred cCCceEEEEecCccHHH--HHHHHHHHhcCceEEEE--eeeCCHHHHHHH
Confidence 35678999999999987 78999999876555555 456788888764
No 23
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=49.19 E-value=13 Score=29.62 Aligned_cols=17 Identities=29% Similarity=0.733 Sum_probs=15.7
Q ss_pred CHHHHHhHHHHhcCCCC
Q 026953 129 SKEFAQKHYHDLKERPF 145 (230)
Q Consensus 129 s~e~A~eFY~~~~gkpf 145 (230)
+.+.|.+||.++.||+|
T Consensus 63 ~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 63 DQESADEFYEEFNGKPF 79 (110)
T ss_pred CHHHHHHHHHHhCCCcc
Confidence 77889999999999987
No 24
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=38.94 E-value=69 Score=23.13 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=28.4
Q ss_pred EEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHh
Q 026953 93 FIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDL 140 (230)
Q Consensus 93 LaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~ 140 (230)
+.+++|.-+.+ +.+|.+.+++....|.++ -.|+.++++++..-.
T Consensus 1 I~v~~p~~~~D--~~~i~~~l~~g~~Vivnl--~~l~~~~~~Ri~Dfl 44 (73)
T PF04472_consen 1 IVVFEPKSFED--AREIVDALREGKIVIVNL--ENLDDEEAQRILDFL 44 (73)
T ss_dssp -EEEE-SSGGG--HHHHHHHHHTT--EEEE---TTS-HHHHHHHHHHH
T ss_pred CEEEeeCCHHH--HHHHHHHHHcCCEEEEEC--CCCCHHHHHHHHHHH
Confidence 36889999987 789999999875555555 567788777665433
No 25
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=36.59 E-value=1.5e+02 Score=21.54 Aligned_cols=46 Identities=20% Similarity=0.439 Sum_probs=31.6
Q ss_pred eeEEEEcCccccCCcHHHHHHHHHHc---CCeEEEEEeeCCCHHHHHhHHHHh
Q 026953 91 RTFIAIKPDGVQRGLISEIISRFERK---GFKLVAIKIVVPSKEFAQKHYHDL 140 (230)
Q Consensus 91 ~TLaIIKPdav~~g~vGeII~~I~~~---Gf~I~~~K~~~Ls~e~A~eFY~~~ 140 (230)
-....|.|+.-.+|.-..+++.+++. |+.+.... +...+..||..+
T Consensus 67 i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~~~~~l~~~----~~~~a~~~y~~~ 115 (117)
T PF13673_consen 67 ISHLYVLPEYRGRGIGRALLDAAEKEAKDGIRRLTVE----ANERARRFYRKL 115 (117)
T ss_dssp EEEEEE-GGGTTSSHHHHHHHHHHHHHTTTCEEEEEE----C-HHHHHHHHHT
T ss_pred EEEEEEChhhcCCcHHHHHHHHHHHHHHcCCcEEEEE----eCHHHHHHHHhC
Confidence 66789999988887433455554433 88877777 788889999764
No 26
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=31.50 E-value=1.6e+02 Score=21.88 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=40.1
Q ss_pred ccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhc
Q 026953 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLK 141 (230)
Q Consensus 88 ~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~ 141 (230)
..-..++|.-|+..+ .+++....+.|..|..-|.+.++.+++++.++..+
T Consensus 61 ~~~D~V~I~tp~~~h----~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 61 EDVDAVIIATPPSSH----AEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAK 110 (120)
T ss_dssp TTESEEEEESSGGGH----HHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHH
T ss_pred hcCCEEEEecCCcch----HHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHH
Confidence 334567777777553 57888888999999999999999999999987654
No 27
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=29.58 E-value=31 Score=25.57 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=23.1
Q ss_pred eCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEE
Q 026953 126 VVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVI 159 (230)
Q Consensus 126 ~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvv 159 (230)
-.|+++++++||... |++|..---+||.+
T Consensus 21 p~~spe~V~dfYs~~-----YPeLttA~v~gP~~ 49 (66)
T TIGR03738 21 PAMSPEQVRDFYSAQ-----YPELLNAEVEGPVV 49 (66)
T ss_pred CCCCHHHHHHHHhcc-----CchheeeeeeCCeE
Confidence 368999999999774 88987776777765
No 28
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=28.40 E-value=51 Score=24.19 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.4
Q ss_pred CCCHHHHHhHHHHhcCCCChHHHHHHhccCcEE
Q 026953 127 VPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVI 159 (230)
Q Consensus 127 ~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvv 159 (230)
.|+++++++||... |++|..---.||.+
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v 50 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV 50 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE
Confidence 68999999999875 89998877778865
No 29
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=28.28 E-value=40 Score=31.86 Aligned_cols=50 Identities=18% Similarity=0.386 Sum_probs=40.6
Q ss_pred eeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcC
Q 026953 91 RTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKE 142 (230)
Q Consensus 91 ~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~g 142 (230)
-..=+|-|..+..|.++.|-+.+.++||. ..-.+--+-..+.-||..+++
T Consensus 149 AGADiVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImsYsaKyaSafYGPFRd 198 (314)
T cd00384 149 AGADIVAPSDMMDGRVAAIREALDEAGFS--DVPIMSYSAKYASAFYGPFRD 198 (314)
T ss_pred cCCCeeecccccccHHHHHHHHHHHCCCC--CCceeecHHHhhhhccchHHH
Confidence 34457889999999999999999999993 455556678889999988865
No 30
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=28.25 E-value=50 Score=31.36 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=48.4
Q ss_pred hhhHhhhhhhhhhhhhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcC
Q 026953 72 IPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKE 142 (230)
Q Consensus 72 ~~~~~~~~~~~~~l~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~g 142 (230)
-.+....|..|..... +-..=+|-|..+..|.++.|-+.+.++||. ..-.+--+-..+.-||..+++
T Consensus 140 ND~Tl~~L~~~Al~~A--~AGaDiVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 206 (323)
T PRK09283 140 NDETLELLAKQALSQA--EAGADIVAPSDMMDGRVGAIREALDEAGFT--DVPIMSYSAKYASAFYGPFRD 206 (323)
T ss_pred CHHHHHHHHHHHHHHH--HhCCCEEEcccccccHHHHHHHHHHHCCCC--CCceeecHHHHHHhhhHHHHH
Confidence 3344445555553222 234457889999999999999999999994 455566688899999999875
No 31
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=25.78 E-value=1.1e+02 Score=24.77 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=34.4
Q ss_pred ceeEEEEcCcc-------ccCCcHHHHHHHHHHcCCeEEEEEeeC---CCHHHHHhHHHHhcCC
Q 026953 90 ERTFIAIKPDG-------VQRGLISEIISRFERKGFKLVAIKIVV---PSKEFAQKHYHDLKER 143 (230)
Q Consensus 90 E~TLaIIKPda-------v~~g~vGeII~~I~~~Gf~I~~~K~~~---Ls~e~A~eFY~~~~gk 143 (230)
++..++|..+. ++.|+.|+|+|++...++++.-.--+. -++..-+-.|+.-+|+
T Consensus 35 ~~~~i~l~~~~l~~dFF~L~TglAGeiLQKf~NY~iklAivGD~s~~~~S~~l~dfi~EsN~G~ 98 (113)
T PF13788_consen 35 GADRIILPKEALSEDFFDLRTGLAGEILQKFVNYRIKLAIVGDFSAYATSKSLRDFIYESNRGN 98 (113)
T ss_pred CCCEEEEEhHHCCHHHHHhhcchHHHHHHHHHhhceeEEEEEcccccccchhHHHHHHHhcCCC
Confidence 44555555444 346888999999999988877764332 3334444445555665
No 32
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=25.15 E-value=42 Score=23.66 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=24.5
Q ss_pred EEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeC
Q 026953 93 FIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVV 127 (230)
Q Consensus 93 LaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~ 127 (230)
+++.-|| ..|-+.+|++.|.++|..|..+...-
T Consensus 2 l~~~l~d--~pG~L~~vL~~f~~~~vni~~I~Srp 34 (75)
T cd04880 2 LVFSLKN--KPGALAKALKVFAERGINLTKIESRP 34 (75)
T ss_pred EEEEeCC--cCCHHHHHHHHHHHCCCCEEEEEeee
Confidence 3444456 34557899999999999999996553
No 33
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.87 E-value=1.2e+02 Score=24.47 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=42.1
Q ss_pred eEEEEcCccccCCcHHHHH-HHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcC-----------CCChHHHHHHhcc-CcE
Q 026953 92 TFIAIKPDGVQRGLISEII-SRFERKGFKLVAIKIVVPSKEFAQKHYHDLKE-----------RPFFNGLCEFLSS-GPV 158 (230)
Q Consensus 92 TLaIIKPdav~~g~vGeII-~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~g-----------kpff~~LV~~MtS-GPv 158 (230)
-++-+++|.-..|. +|+ ..++..||+++.....+-.++.++..-++..+ .+.++.+++.|.. |+-
T Consensus 6 ~~a~~g~D~Hd~g~--~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~ 83 (132)
T TIGR00640 6 LVAKMGQDGHDRGA--KVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRP 83 (132)
T ss_pred EEEeeCCCccHHHH--HHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCC
Confidence 45566776655431 454 55788899999999886555555554443322 1345667776655 552
Q ss_pred EEEEEEe
Q 026953 159 IAMVGIS 165 (230)
Q Consensus 159 vALvL~g 165 (230)
-..++.|
T Consensus 84 ~i~vivG 90 (132)
T TIGR00640 84 DILVVVG 90 (132)
T ss_pred CCEEEEe
Confidence 3334444
No 34
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=24.49 E-value=1.7e+02 Score=24.60 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=29.4
Q ss_pred EEEcCccccCC-----------cHHHHHHHHHHcCCe-EEEEEeeCCCHHHHHhHHHHh
Q 026953 94 IAIKPDGVQRG-----------LISEIISRFERKGFK-LVAIKIVVPSKEFAQKHYHDL 140 (230)
Q Consensus 94 aIIKPdav~~g-----------~vGeII~~I~~~Gf~-I~~~K~~~Ls~e~A~eFY~~~ 140 (230)
++|||+..... .+..|++.+.+.|.+ |+-...........++.++.+
T Consensus 2 V~IKpN~~~~~~~~~~~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~ 60 (206)
T PF04015_consen 2 VLIKPNFVNPGPPESGATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRS 60 (206)
T ss_pred EEEEeCCCCCCCCCCCccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHc
Confidence 67888876422 246889999999987 555544444334555555444
No 35
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=23.32 E-value=81 Score=24.00 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=20.9
Q ss_pred cccCCcHHHHHHHHHHcCCeEEEEEe
Q 026953 100 GVQRGLISEIISRFERKGFKLVAIKI 125 (230)
Q Consensus 100 av~~g~vGeII~~I~~~Gf~I~~~K~ 125 (230)
+|++++ ..|-+.|+++||+++.++.
T Consensus 5 AVE~~L-s~v~~~L~~~GyeVv~l~~ 29 (80)
T PF03698_consen 5 AVEEGL-SNVKEALREKGYEVVDLEN 29 (80)
T ss_pred EecCCc-hHHHHHHHHCCCEEEecCC
Confidence 566764 7899999999999999873
No 36
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=23.26 E-value=60 Score=30.80 Aligned_cols=65 Identities=25% Similarity=0.394 Sum_probs=46.4
Q ss_pred hHhhhhhhhhhhhhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcC
Q 026953 74 AAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKE 142 (230)
Q Consensus 74 ~~~~~~~~~~~l~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~g 142 (230)
+....|..|..... +-..=+|-|..+..|.++.|-+.+.++||. ..-.+--+-..+.-||..+++
T Consensus 144 ~Tl~~L~~~Als~A--~AGADiVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 208 (322)
T PRK13384 144 ATVENLVKQSVTAA--KAGADMLAPSAMMDGQVKAIRQGLDAAGFE--HVAILAHSAKFASSFYGPFRA 208 (322)
T ss_pred HHHHHHHHHHHHHH--HcCCCeEecccccccHHHHHHHHHHHCCCC--CCceeehhHhhhhhhcchHHH
Confidence 33445555543222 234457889999999999999999999994 345556678889999988764
No 37
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=23.02 E-value=1.7e+02 Score=28.11 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=40.6
Q ss_pred HHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcC------------CCChHHHHHHhccCcEEEEEE
Q 026953 111 SRFERKGFKLVAIKIVVPSKEFAQKHYHDLKE------------RPFFNGLCEFLSSGPVIAMVG 163 (230)
Q Consensus 111 ~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~g------------kpff~~LV~~MtSGPvvALvL 163 (230)
.++.+.|++|....--.++.++...||.-|.. +.||..|.+-|...-++++.-
T Consensus 193 r~v~~~Gi~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~ 257 (370)
T PF04339_consen 193 RKVAEQGIRIRTLTGDEITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVAR 257 (370)
T ss_pred HHHHHcCCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEE
Confidence 45677899999999999999998888877744 357899988887655444443
No 38
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=22.57 E-value=55 Score=31.02 Aligned_cols=49 Identities=18% Similarity=0.402 Sum_probs=40.2
Q ss_pred eEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcC
Q 026953 92 TFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKE 142 (230)
Q Consensus 92 TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~g 142 (230)
..=+|-|..+..|.++.|-+.+.++||. ..-.+--+-..+.-||..+++
T Consensus 155 GADiVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 203 (320)
T cd04823 155 GADIVAPSDMMDGRIGAIREALDAEGFT--NVSILSYAAKYASAFYGPFRD 203 (320)
T ss_pred CCCEEEcccchhhHHHHHHHHHHHCCCC--CCceeechHHhhhhccchhHH
Confidence 3447889998899999999999999995 345556678899999998875
No 39
>PHA02114 hypothetical protein
Probab=21.56 E-value=1.2e+02 Score=24.64 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=44.4
Q ss_pred hhhhhhhhhhhhHhhhhhhhhhhhhccceeEEEEcCc-cccCCcHHHHHHHHHHcCCeEEEEEee
Q 026953 63 RSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPD-GVQRGLISEIISRFERKGFKLVAIKIV 126 (230)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~l~~~~E~TLaIIKPd-av~~g~vGeII~~I~~~Gf~I~~~K~~ 126 (230)
..++..--..||--.|+.+-+.|.. ...+++.-+ ++.++-.-+++.++++.||++++.+.+
T Consensus 57 nry~i~t~v~patpemf~dl~~fd~---~gtivldvn~amsr~pwi~v~s~le~~g~~vvatqel 118 (127)
T PHA02114 57 NRYIISTCVEPATPEMFDDLGAFDQ---YGTIVLDVNYAMSRAPWIKVISRLEEAGFNVVATQEL 118 (127)
T ss_pred ceeEEEEeecCCCHHHHhhhhhHhh---cCeEEEEehhhhccCcHHHHHHHHHhcCceeeehhhh
Confidence 3455566778999899988776543 334444444 788776679999999999999987654
No 40
>COG3885 Uncharacterized conserved protein [Function unknown]
Probab=20.70 E-value=1.3e+02 Score=27.73 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=36.7
Q ss_pred ceeEEEEcCcccc-CCcHHHHHHHHHHc----CCeEEEEEeeCCCHHHHHhHHHHhcCC
Q 026953 90 ERTFIAIKPDGVQ-RGLISEIISRFERK----GFKLVAIKIVVPSKEFAQKHYHDLKER 143 (230)
Q Consensus 90 E~TLaIIKPdav~-~g~vGeII~~I~~~----Gf~I~~~K~~~Ls~e~A~eFY~~~~gk 143 (230)
-.|++||-||.+. ...++-|......- +-...-.+....+++.+.+.|++-+|.
T Consensus 39 seT~VvIsPHgi~ldd~iaviys~~l~g~~~~~k~~~i~~ey~~dreLa~~I~~~a~g~ 97 (261)
T COG3885 39 SETYVVISPHGIRLDDYIAVIYSEYLSGLPYRTKHHPIRKEYKNDRELADKIYEEAKGQ 97 (261)
T ss_pred CceEEEEcCCceeeechhhHHhHHhhcccccccccCcchhhhhccHHHHHHHHHHhccC
Confidence 4799999999754 33466666554431 122222355677899999999999886
No 41
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=20.36 E-value=48 Score=27.01 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=7.6
Q ss_pred cceeeeeeeec
Q 026953 218 SCCCWKVYFLT 228 (230)
Q Consensus 218 ~~~~~~~~~~~ 228 (230)
-|..|+|||..
T Consensus 106 kI~~WRDYFD~ 116 (125)
T PF07858_consen 106 KITLWRDYFDL 116 (125)
T ss_dssp EEEEEEEE--H
T ss_pred EEEEEeccCCH
Confidence 48999999964
Done!