Query 026953
Match_columns 230
No_of_seqs 209 out of 1119
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 03:57:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hr2_A Nucleoside diphosphate 100.0 7E-43 2.4E-47 288.1 11.4 125 88-216 6-134 (145)
2 3evo_A NDP kinase, NDK, nucleo 100.0 3.5E-42 1.2E-46 284.1 10.7 135 87-229 4-143 (146)
3 3ztp_A Nucleoside diphosphate 100.0 5.4E-42 1.8E-46 281.6 10.4 124 89-216 3-133 (142)
4 3mpd_A Nucleoside diphosphate 100.0 6.6E-42 2.2E-46 283.9 10.7 126 88-217 4-133 (151)
5 4fkx_A NDK B, nucleoside dipho 100.0 7.6E-42 2.6E-46 286.3 10.9 130 83-216 5-138 (161)
6 3l7u_A Nucleoside diphosphate 100.0 7E-42 2.4E-46 289.2 10.5 133 80-216 15-151 (172)
7 1k44_A Nucleoside diphosphate 100.0 1.5E-41 5.1E-46 277.0 11.2 124 89-216 2-130 (136)
8 1wkj_A Nucleoside diphosphate 100.0 1.3E-41 4.5E-46 277.7 10.7 124 89-216 1-128 (137)
9 3q8u_A Nucleoside diphosphate 100.0 1.9E-41 6.6E-46 282.8 10.9 124 89-216 1-128 (157)
10 2hur_A NDK, nucleoside diphosp 100.0 2.9E-41 9.8E-46 277.3 11.5 124 89-216 2-129 (142)
11 1nhk_R Nucleoside diphosphate 100.0 3.2E-41 1.1E-45 277.6 11.2 124 89-216 2-129 (144)
12 3fkb_A NDP kinase, NDK, nucleo 100.0 2.2E-41 7.7E-46 281.8 10.3 125 88-216 7-135 (155)
13 2vu5_A Nucleoside diphosphate 100.0 2.7E-41 9.1E-46 279.1 10.1 124 89-216 1-128 (148)
14 1xiq_A Nucleoside diphosphate 100.0 2.9E-41 1E-45 281.6 10.3 129 84-216 4-136 (157)
15 1u8w_A Nucleoside diphosphate 100.0 4E-41 1.4E-45 278.4 10.1 124 89-216 1-128 (149)
16 1pku_A Nucleoside diphosphate 100.0 4E-41 1.4E-45 278.7 10.0 124 89-216 2-129 (150)
17 1w7w_A Nucleoside diphosphate 100.0 5E-41 1.7E-45 286.1 10.4 135 78-216 21-159 (182)
18 1s57_A Nucleoside diphosphate 100.0 7.1E-41 2.4E-45 278.0 10.9 125 88-216 4-132 (153)
19 1nb2_A Nucleoside diphosphate 100.0 4.1E-41 1.4E-45 278.6 8.5 124 89-216 2-129 (150)
20 3b54_A NDK, NDP kinase, nucleo 100.0 3.8E-41 1.3E-45 281.9 8.2 130 83-216 7-140 (161)
21 3bbb_A Nucleoside diphosphate 100.0 9.1E-41 3.1E-45 276.8 10.3 125 88-216 2-130 (151)
22 1ehw_A NDPK H4, nucleoside dip 100.0 1.3E-40 4.3E-45 279.1 10.9 125 88-216 23-151 (162)
23 3r9l_A Nucleoside diphosphate 100.0 2.8E-41 9.4E-46 281.2 6.7 125 88-216 6-134 (155)
24 1zs6_A Nucleoside diphosphate 100.0 1.2E-40 4.1E-45 280.8 10.5 128 85-216 17-148 (169)
25 2az3_A Nucleoside diphosphate 100.0 2E-40 7E-45 278.2 10.8 129 84-216 3-137 (164)
26 3js9_A Nucleoside diphosphate 100.0 1.8E-40 6.2E-45 276.6 10.0 129 84-216 4-136 (156)
27 2dxe_A Nucleoside diphosphate 100.0 2.9E-40 9.8E-45 276.2 10.9 125 88-216 6-137 (160)
28 4dz6_A Nucleoside diphosphate 100.0 4.5E-40 1.5E-44 281.9 7.5 133 80-216 17-168 (190)
29 1xqi_A Nucleoside diphosphate 100.0 2.7E-37 9.3E-42 265.5 6.4 125 88-216 14-185 (195)
30 3bh7_B Protein XRP2; protein-p 99.9 2.7E-26 9.2E-31 212.1 8.7 108 87-216 233-340 (352)
31 3p04_A Uncharacterized BCR; SE 58.6 12 0.00041 27.8 4.2 44 90-137 4-47 (87)
32 3bkw_A MLL3908 protein, S-aden 37.3 50 0.0017 26.1 5.1 30 106-135 194-223 (243)
33 3i5g_C Myosin catalytic light 30.4 29 0.00099 26.6 2.5 44 107-158 105-154 (159)
34 3bgh_A Protein HPAA, putative 22.9 1E+02 0.0034 26.9 4.7 53 88-140 34-100 (236)
35 1lc0_A Biliverdin reductase A; 22.1 1.4E+02 0.0049 25.2 5.7 66 90-159 66-144 (294)
No 1
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=7e-43 Score=288.13 Aligned_cols=125 Identities=35% Similarity=0.411 Sum_probs=117.6
Q ss_pred ccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeec
Q 026953 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTL 167 (230)
Q Consensus 88 ~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~ 167 (230)
.+|+||+|||||+|++|++|+||++|+++||+|+++|+++||+++|++||.+|+|+|||++||+||+||||++|+|.|+
T Consensus 6 ~~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~- 84 (145)
T 4hr2_A 6 ALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGE- 84 (145)
T ss_dssp CEEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEE-
T ss_pred hHHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcC-
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 168 YYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 168 n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
|+ +..||.++||+ .+.|+ ||++||+|.++|+|||||++|+|++|..
T Consensus 85 ~a---V~~~R~l~G~tdp~~A~pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi~ 134 (145)
T 4hr2_A 85 DA---ILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIA 134 (145)
T ss_dssp TH---HHHHHHHHCCSSTTTSCTTSHHHHHCSBTTBCSEEECCSHHHHHHHHH
T ss_pred Cc---HhHHhhccCCCCcccCCCCCcHHHhcCCcCccceECCCCHHHHHHHHH
Confidence 55 56677888887 57788 9999999999999999999999999973
No 2
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=3.5e-42 Score=284.09 Aligned_cols=135 Identities=30% Similarity=0.501 Sum_probs=118.9
Q ss_pred hccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCC-CHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEe
Q 026953 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVP-SKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGIS 165 (230)
Q Consensus 87 ~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~L-s~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g 165 (230)
..+|+||+|||||+++++++|+||++|+++||+|+++||++| |+++|++||.+|+|+|||++||+||+||||++|+|.|
T Consensus 4 ~~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg 83 (146)
T 3evo_A 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEG 83 (146)
T ss_dssp --CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEE
T ss_pred CcceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeC
Confidence 358999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ecccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhcccceeeeeeeecc
Q 026953 166 TLYYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRRSSCCCWKVYFLTE 229 (230)
Q Consensus 166 ~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~~~~~~~~~~~~~~ 229 (230)
+ |+ +..||.++||+ .+.|+ ||++||++.++|+|||||++|+|++|. ..|=..+.+|
T Consensus 84 ~-na---V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi----~~fF~~~e~~ 143 (146)
T 3evo_A 84 T-DA---ISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDSEDSAVDEI----SIWFPETKME 143 (146)
T ss_dssp T-TH---HHHHHHHHCCSSTTTCCTTSHHHHHCCSSSCCSEEECCSHHHHHHHH----HHHCC-----
T ss_pred C-CH---HHHHHHHcCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHH----HHcCChhhcC
Confidence 6 55 56677888886 57788 999999999999999999999999987 4454444333
No 3
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=5.4e-42 Score=281.57 Aligned_cols=124 Identities=31% Similarity=0.428 Sum_probs=116.9
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||++++|++|+||++|+++||+|+++|+++||+++|++||.+|+|+|||++|++||+||||++|+|.|+ |
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~-n 81 (142)
T 3ztp_A 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGE-D 81 (142)
T ss_dssp EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEE-T
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCC-C
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999999997 5
Q ss_pred cccchhhhhhhccCc---CC---CCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHST---FA---GMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~---gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+ .+ .|+ ||++||++.++|+|||||++|+|++|..
T Consensus 82 a---V~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~ 133 (142)
T 3ztp_A 82 A---IKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEIC 133 (142)
T ss_dssp H---HHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHHHHHH
T ss_pred H---HHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHHHHHHHHH
Confidence 5 56678889987 34 787 9999999999999999999999999874
No 4
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=6.6e-42 Score=283.87 Aligned_cols=126 Identities=40% Similarity=0.568 Sum_probs=117.3
Q ss_pred ccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeec
Q 026953 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTL 167 (230)
Q Consensus 88 ~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~ 167 (230)
.+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+|+|||++||+||+||||++|+|.|+
T Consensus 4 ~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~- 82 (151)
T 3mpd_A 4 SMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGK- 82 (151)
T ss_dssp -CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST-
T ss_pred ceEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCC-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhcc
Q 026953 168 YYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRRS 217 (230)
Q Consensus 168 n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~~ 217 (230)
|+ +..||.++||+ .+.|+ ||++||++.++|+|||||++|+|++|...
T Consensus 83 na---V~~~R~l~G~t~p~~a~PgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~ 133 (151)
T 3mpd_A 83 DA---VSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKL 133 (151)
T ss_dssp TH---HHHHHHHHCCSSTTTSCTTSHHHHHCCSSTTCSEEECSSHHHHHHHHHH
T ss_pred cH---HHHHHHHhCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHH
Confidence 55 55677888876 57788 99999999999999999999999998743
No 5
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=7.6e-42 Score=286.27 Aligned_cols=130 Identities=40% Similarity=0.622 Sum_probs=118.3
Q ss_pred hhhhhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEE
Q 026953 83 EVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMV 162 (230)
Q Consensus 83 ~~l~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALv 162 (230)
.++....|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+|+|||++||+||+||||++|+
T Consensus 5 ~~~~~~~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamv 84 (161)
T 4fkx_A 5 HHHHMPSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMV 84 (161)
T ss_dssp ----CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEE
T ss_pred cccCCCcccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEE
Confidence 34555789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 163 GISTLYYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 163 L~g~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
|.|+ |+ +..||.++||+ .+.|+ ||++||++.++|+|||||++|+|++|..
T Consensus 85 leg~-na---V~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~ 138 (161)
T 4fkx_A 85 WEGL-GV---VKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVESAKREIA 138 (161)
T ss_dssp EEST-TH---HHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHH
T ss_pred Eecc-Ch---HHHHHHHhcCCChhhcCCCChhHhhCCCccceeEEeCCCHHHHHHHHH
Confidence 9996 55 56677888887 57788 9999999999999999999999999874
No 6
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=7e-42 Score=289.18 Aligned_cols=133 Identities=41% Similarity=0.672 Sum_probs=119.6
Q ss_pred hhhhhhhhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEE
Q 026953 80 QEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVI 159 (230)
Q Consensus 80 ~~~~~l~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvv 159 (230)
-++..+...+|+||+|||||++++|++|+||++|+++||+|+++|+++||+++|++||.+|+|+|||++||+||+||||+
T Consensus 15 ~~~~~~~~~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvv 94 (172)
T 3l7u_A 15 VPRGSHMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVV 94 (172)
T ss_dssp ------CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEE
T ss_pred CCchhhcchhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeE
Confidence 35667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 160 AMVGISTLYYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 160 ALvL~g~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+|+|.|+ |+ +..||.++||+ .+.|+ ||++||++.++|+|||||++|+|++|..
T Consensus 95 amvleg~-na---V~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~VHgSDs~esA~rEI~ 151 (172)
T 3l7u_A 95 AMVWEGL-NV---VKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIG 151 (172)
T ss_dssp EEEEEST-TH---HHHHHHHHCCSSTTTCCTTSHHHHHCCCGGGCCEEECSSHHHHHHHHH
T ss_pred EEEEeCC-CH---HHHHHHHcCCCChhhcCCCChhHHhcCCCCCcEEEeCCCHHHHHHHHH
Confidence 9999996 55 56677888886 56788 9999999999999999999999999874
No 7
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=1.5e-41 Score=277.02 Aligned_cols=124 Identities=39% Similarity=0.595 Sum_probs=115.7
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||++++|++|+||++|+++||+|+++|+++||+++|++||.+|+|+|||++||+||+||||++|+|.|+ |
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~-~ 80 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGT-R 80 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEET-T
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCC-C
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999996 6
Q ss_pred cccchhhhhhhccCc----CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHST----FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~----l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+ .+.|+ ||++||.+..+|+|||||++|+|++|..
T Consensus 81 a---V~~~R~l~G~t~p~~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~ 130 (136)
T 1k44_A 81 A---IAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIA 130 (136)
T ss_dssp H---HHHHHHHHCCSSTTTTSCTTSHHHHHCCCSTTCCEEECSSHHHHHHHHH
T ss_pred H---HHHHHHHhCCCCccccCCCCCcHHHhcCCccceEEEeCCCHHHHHHHHH
Confidence 5 55677778876 45588 9999999999999999999999999873
No 8
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=1.3e-41 Score=277.66 Aligned_cols=124 Identities=41% Similarity=0.676 Sum_probs=116.2
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+|+|||++|++||+||||++|+|.|+ |
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~-~ 79 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGP-G 79 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEEST-T
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCC-c
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+ .+.|+ ||++||.+..+|+|||||++|+|++|..
T Consensus 80 a---V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~ 128 (137)
T 1wkj_A 80 V---VAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIA 128 (137)
T ss_dssp H---HHHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHH
T ss_pred H---HHHHHHHhCCCCCCcCCCCcchHHhCCCcccceEEecCCHHHHHHHHH
Confidence 5 56677888877 56787 9999999999999999999999999874
No 9
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=1.9e-41 Score=282.75 Aligned_cols=124 Identities=40% Similarity=0.567 Sum_probs=116.4
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+|+|||++||+||+||||++|+|.|+ |
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~-n 79 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGE-D 79 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST-T
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCC-C
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+ .+.|+ ||++||++..+|+|||||++|+|++|..
T Consensus 80 a---V~~~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 128 (157)
T 3q8u_A 80 A---VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREIN 128 (157)
T ss_dssp H---HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHH
T ss_pred H---HHHHHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeCCCHHHHHHHHH
Confidence 5 55677788876 57788 9999999999999999999999999873
No 10
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=2.9e-41 Score=277.25 Aligned_cols=124 Identities=32% Similarity=0.490 Sum_probs=116.4
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||++++|++|+||++|+++||+|+++|+++||+++|++||.+|+|+|||++||+||+||||++|+|.|+ |
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~-~ 80 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGE-N 80 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEE-T
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecc-c
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999997 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+ .+.|+ ||++||.+..+|+|||||++|+|++|..
T Consensus 81 a---V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~ 129 (142)
T 2hur_A 81 A---VQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREIA 129 (142)
T ss_dssp H---HHHHHHHHCCSSTTTSCTTSHHHHHCSSSTTCSEEECSSHHHHHHHHH
T ss_pred H---HHHHHHHhCCCCcccCCCCcchHHhCCCcccceEEeCCCHHHHHHHHH
Confidence 5 56677888887 56788 9999999999999999999999999874
No 11
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=3.2e-41 Score=277.60 Aligned_cols=124 Identities=35% Similarity=0.480 Sum_probs=116.6
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||++++|++|+||++|+++||+|+++|+++||+++|++||.+|+|+|||++||+||+||||++|+|.|+ |
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~-~ 80 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGE-N 80 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEE-T
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEecc-C
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999997 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+ .+.|+ ||++||.+..+|+|||||++|+|++|..
T Consensus 81 a---V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 129 (144)
T 1nhk_R 81 A---VLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIA 129 (144)
T ss_dssp H---HHHHHHHHCCSSGGGCCTTSHHHHHCCSSSSCSEEECSSHHHHHHHHH
T ss_pred H---HHHHHHHhCCCCCCcCCCCcchHHhCCCCcceeEEeCCCHHHHHHHHH
Confidence 5 56677888887 56788 9999999999999999999999999874
No 12
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=2.2e-41 Score=281.79 Aligned_cols=125 Identities=43% Similarity=0.686 Sum_probs=117.3
Q ss_pred ccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeec
Q 026953 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTL 167 (230)
Q Consensus 88 ~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~ 167 (230)
.+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+|+|||++||+||+||||++|+|.|+
T Consensus 7 ~~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~- 85 (155)
T 3fkb_A 7 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGK- 85 (155)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST-
T ss_pred ccceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCC-
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 168 YYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 168 n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
|+ +..||.++||+ .+.|+ ||++||++..+|+|||||++|+|++|..
T Consensus 86 na---V~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 135 (155)
T 3fkb_A 86 GV---VASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVESANREIA 135 (155)
T ss_dssp TH---HHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHH
T ss_pred CH---HHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHH
Confidence 55 56677888887 57788 9999999999999999999999999874
No 13
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=2.7e-41 Score=279.12 Aligned_cols=124 Identities=39% Similarity=0.628 Sum_probs=116.3
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+|+|||++||+||+||||++|+|.|+ |
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~-~ 79 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGE-G 79 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEEST-T
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecc-C
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+ .+.|+ ||++||.+..+|+|||||++|+|++|..
T Consensus 80 a---V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 128 (148)
T 2vu5_A 80 V---VDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIG 128 (148)
T ss_dssp H---HHHHHHHHCCSSTTTSCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHH
T ss_pred h---HHHHHHHhCCCCccccCCCChHHHhcCCcccceEEeCCCHHHHHHHHH
Confidence 5 56677888887 46787 9999999999999999999999999874
No 14
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=2.9e-41 Score=281.61 Aligned_cols=129 Identities=40% Similarity=0.679 Sum_probs=116.9
Q ss_pred hhhhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEE
Q 026953 84 VHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVG 163 (230)
Q Consensus 84 ~l~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL 163 (230)
++...+|+||+|||||+|++|++|+||++|+++||+|+++||++||+++|++||.+|+|+|||++||+||+||||++|+|
T Consensus 4 ~~~~~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvl 83 (157)
T 1xiq_A 4 HHHHHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVW 83 (157)
T ss_dssp -----CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEE
T ss_pred cccchhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEE
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 164 ISTLYYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 164 ~g~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
.|+ |+ +..||.++||+ .+.|+ ||++||++.++|+|||||++|+|++|.+
T Consensus 84 eg~-na---V~~~R~l~G~T~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 136 (157)
T 1xiq_A 84 EGV-DM---VKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVASANKEIN 136 (157)
T ss_dssp EST-TH---HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHH
T ss_pred ecc-cc---hHHHHHHcCCCCCCcCCCCChHHHhCCCCCceeEEeCCCHHHHHHHHH
Confidence 996 55 55677788877 57788 9999999999999999999999999874
No 15
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=4e-41 Score=278.43 Aligned_cols=124 Identities=40% Similarity=0.656 Sum_probs=116.4
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+|+|||++||+||+||||++|+|.|+ |
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~-~ 79 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGK-N 79 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEEST-T
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecC-C
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+ .+.|+ ||++||++..+|+|||||++|+|++|.+
T Consensus 80 a---V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 128 (149)
T 1u8w_A 80 V---VLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIA 128 (149)
T ss_dssp H---HHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSSHHHHHHHHH
T ss_pred c---hHHHHHHhCCCCcccCCCCCcHHHHCCCCcCceEEecCCHHHHHHHHH
Confidence 5 56677888887 56788 9999999999999999999999999874
No 16
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=4e-41 Score=278.70 Aligned_cols=124 Identities=44% Similarity=0.655 Sum_probs=116.7
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+|+|||++||+||+||||++|+|.|+ |
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~-~ 80 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGK-D 80 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEEST-T
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEecc-c
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+ .+.|+ ||++||.+..+|+|||||++|+|++|..
T Consensus 81 a---V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 129 (150)
T 1pku_A 81 V---VATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIA 129 (150)
T ss_dssp H---HHHHHHHHCCSSGGGSCTTSHHHHHCSBTTBCSEEECSSHHHHHHHHH
T ss_pred h---HHHHHHHhCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHHH
Confidence 5 56677888887 56788 9999999999999999999999999874
No 17
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=5e-41 Score=286.14 Aligned_cols=135 Identities=58% Similarity=0.811 Sum_probs=118.8
Q ss_pred hhhhhhhhhhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCc
Q 026953 78 TLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGP 157 (230)
Q Consensus 78 ~~~~~~~l~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGP 157 (230)
++++...+...+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||++|+|+|||++||+||+|||
T Consensus 21 ~f~~~~~~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGP 100 (182)
T 1w7w_A 21 YFQGAMDPEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGP 100 (182)
T ss_dssp ---------CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSC
T ss_pred hcCCCccccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCC
Confidence 44555677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeecccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 158 VIAMVGISTLYYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 158 vvALvL~g~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
|++|+|.|+ |+ +..||.++||+ .+.|+ ||++||++..+|+|||||++|+|++|..
T Consensus 101 vvamvleG~-na---V~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEi~ 159 (182)
T 1w7w_A 101 VIAMVWEGE-GV---ITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDEIK 159 (182)
T ss_dssp EEEEEEEST-TH---HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHHH
T ss_pred EEEEEEecc-cH---HHHHHHHhCCCCCCCCCCCChHHHhCCCccceeEEeCCCHHHHHHHHH
Confidence 999999996 55 56677888887 56788 9999999999999999999999999874
No 18
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=7.1e-41 Score=278.02 Aligned_cols=125 Identities=39% Similarity=0.613 Sum_probs=117.0
Q ss_pred ccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeec
Q 026953 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTL 167 (230)
Q Consensus 88 ~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~ 167 (230)
.+|+||+|||||++++|++|+||++|+++||+|+++|+++||+++|++||.+|+|+|||++||+||+||||++|+|.|+
T Consensus 4 ~~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~- 82 (153)
T 1s57_A 4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGV- 82 (153)
T ss_dssp CCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEET-
T ss_pred ccceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEecc-
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 168 YYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 168 n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
|+ +..||.++||+ .+.|+ ||++||.+..+|+|||||++|+|++|..
T Consensus 83 ~a---V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 132 (153)
T 1s57_A 83 GV---VASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIG 132 (153)
T ss_dssp TH---HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHH
T ss_pred cH---HHHHHHHhCCCCccccCCcchHHHhcCCCcCceEEcCCCHHHHHHHHH
Confidence 55 56677888887 57788 9999999999999999999999999874
No 19
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=4.1e-41 Score=278.64 Aligned_cols=124 Identities=39% Similarity=0.514 Sum_probs=116.5
Q ss_pred cceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeecc
Q 026953 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTLY 168 (230)
Q Consensus 89 ~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~n 168 (230)
+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+|+|||++||+||+||||++|+|.|+ |
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~-n 80 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGL-N 80 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEEST-T
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecC-C
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 169 YLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 169 ~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
+ +..||.++||+ .+.|+ ||++||.+..+|+|||||++|+|++|..
T Consensus 81 a---V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 129 (150)
T 1nb2_A 81 A---AATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAGSAAKEIG 129 (150)
T ss_dssp H---HHHHHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEECSSHHHHHHHHH
T ss_pred H---HHHHHHHhCCCCcccCCCCChHHHhcCCccceeEEeCCCHHHHHHHHH
Confidence 5 56677888887 56788 9999999999999999999999999874
No 20
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-41 Score=281.93 Aligned_cols=130 Identities=36% Similarity=0.583 Sum_probs=112.4
Q ss_pred hhhhhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEE
Q 026953 83 EVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMV 162 (230)
Q Consensus 83 ~~l~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALv 162 (230)
.++.+..|+||+|||||+|++|++|+||++|+++||+|+++||++||+++|++||.+|+|+|||++||+||+||||++|+
T Consensus 7 ~~~~~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamv 86 (161)
T 3b54_A 7 HHMSSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATV 86 (161)
T ss_dssp ---CCCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEE
T ss_pred cccccccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 163 GISTLYYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 163 L~g~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
|.|+ |+ +..||.++||+ .+.|+ ||++||++.++|+|||||++|+|++|.+
T Consensus 87 leg~-na---V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 140 (161)
T 3b54_A 87 WEGK-DV---VRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREIN 140 (161)
T ss_dssp EEST-TH---HHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHH
T ss_pred Eecc-Ch---HHHHHHHhCCCCcccCCCCChHHHhcCCCCCceEEeCCCHHHHHHHHH
Confidence 9996 55 56677888887 57788 9999999999999999999999999874
No 21
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=9.1e-41 Score=276.85 Aligned_cols=125 Identities=44% Similarity=0.721 Sum_probs=117.1
Q ss_pred ccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeec
Q 026953 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTL 167 (230)
Q Consensus 88 ~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~ 167 (230)
.+|+||+|||||++++|++|+||++|+++||+|+++||+++++++|++||.+|+++|||++||+||+||||++|+|.|+
T Consensus 2 ~~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~- 80 (151)
T 3bbb_A 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGL- 80 (151)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST-
T ss_pred CcceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecC-
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 168 YYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 168 n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
|+ +..||.++||+ .+.|+ ||++||.+..+|+|||||++|+|++|..
T Consensus 81 ~a---V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 130 (151)
T 3bbb_A 81 NV---VKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEIS 130 (151)
T ss_dssp TH---HHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHH
T ss_pred CH---HHHHHHHhCCCCcccCCCCCcHHHhcCCcccceEEecCCHHHHHHHHH
Confidence 55 56677888887 56788 9999999999999999999999999874
No 22
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1.3e-40 Score=279.06 Aligned_cols=125 Identities=36% Similarity=0.614 Sum_probs=117.3
Q ss_pred ccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeec
Q 026953 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTL 167 (230)
Q Consensus 88 ~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~ 167 (230)
.+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+|+|||++||+||+||||++|+|.|+
T Consensus 23 ~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~- 101 (162)
T 1ehw_A 23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGY- 101 (162)
T ss_dssp GGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST-
T ss_pred hhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEech-
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 168 YYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 168 n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
|+ +..||.++||+ .+.|+ ||++||.+..+|+|||||++|+|++|.+
T Consensus 102 na---V~~~R~l~G~T~p~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 151 (162)
T 1ehw_A 102 NV---VRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQ 151 (162)
T ss_dssp TH---HHHHHHHHCCSSGGGSCTTSHHHHHCCCSSCCSEEECSSHHHHHHHHH
T ss_pred hH---HHHHHHHhCCCCCCCCCCCChHHHhCCCCCCeEEEECCCHHHHHHHHH
Confidence 55 56677888887 56788 9999999999999999999999999874
No 23
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=2.8e-41 Score=281.25 Aligned_cols=125 Identities=46% Similarity=0.733 Sum_probs=90.1
Q ss_pred ccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeec
Q 026953 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTL 167 (230)
Q Consensus 88 ~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~ 167 (230)
.+|+||+|||||+++++++|+||++|+++||+|+++|+++||+++|++||.+|+|+|||++||+||+||||++|+|.|+
T Consensus 6 ~~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~- 84 (155)
T 3r9l_A 6 ARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGA- 84 (155)
T ss_dssp CSCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEEST-
T ss_pred chheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCC-
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred ccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 168 YYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 168 n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
|+ +..||.++||+ .+.|+ ||++||++..+|+|||||++|+|++|..
T Consensus 85 na---V~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 134 (155)
T 3r9l_A 85 NV---VSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDDAAREIA 134 (155)
T ss_dssp TH---HHHHHHHHCCSCTTTCCTTSHHHHHCCSSTTCCEEECSSHHHHHHHHH
T ss_pred CH---HHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHH
Confidence 55 55677888876 56788 9999999999999999999999999874
No 24
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1.2e-40 Score=280.80 Aligned_cols=128 Identities=41% Similarity=0.659 Sum_probs=118.8
Q ss_pred hhhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEE
Q 026953 85 HAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGI 164 (230)
Q Consensus 85 l~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~ 164 (230)
....+|+||+|||||++++|++|+||++|+++||+|+++|+++||+++|++||.+|+|+|||++||+||+||||++|+|.
T Consensus 17 ~~~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvle 96 (169)
T 1zs6_A 17 CTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQ 96 (169)
T ss_dssp -CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred hhhhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEe
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 165 STLYYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 165 g~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
|+ |+ +..||.++||+ .+.|+ ||++||.+..+|+|||||++|+|++|.+
T Consensus 97 g~-~a---V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~ 148 (169)
T 1zs6_A 97 GL-DV---VRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIA 148 (169)
T ss_dssp ST-TH---HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCSEEECSSHHHHHHHHH
T ss_pred cC-Cc---hHHHHHHhCCCCcccCCCCChHHHHcCCCcCceEEecCCHHHHHHHHH
Confidence 96 55 56677888887 57788 9999999999999999999999999874
No 25
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=2e-40 Score=278.24 Aligned_cols=129 Identities=37% Similarity=0.546 Sum_probs=117.0
Q ss_pred hhhhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEE
Q 026953 84 VHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVG 163 (230)
Q Consensus 84 ~l~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL 163 (230)
+|...+|+||+|||||+|++|++|+||++|+++||+|+++||++||+++|++||.+|+|+|||++||+||+||||++|+|
T Consensus 3 ~l~~~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvl 82 (164)
T 2az3_A 3 HMTDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVW 82 (164)
T ss_dssp ----CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEE
T ss_pred cccCccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEE
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChh--chHhhhc
Q 026953 164 ISTLYYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIR--TWNNQRR 216 (230)
Q Consensus 164 ~g~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~E--da~~~r~ 216 (230)
.|+ |+ +..||.++||+ .+.|+ ||++||++.++|+|||||++| +|++|.+
T Consensus 83 eg~-~a---V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e~gsA~rEi~ 137 (164)
T 2az3_A 83 EGA-DA---TRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREIA 137 (164)
T ss_dssp EST-TH---HHHHHHHHCCSSGGGSCTTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHH
T ss_pred ccc-cH---HHHHHHHhCCCCccccCCCcchhhhcccccCceEEecCCcchhhHHHHHH
Confidence 996 55 56677888887 57788 999999999999999999999 8888763
No 26
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=1.8e-40 Score=276.64 Aligned_cols=129 Identities=40% Similarity=0.632 Sum_probs=116.8
Q ss_pred hhhhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEE
Q 026953 84 VHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVG 163 (230)
Q Consensus 84 ~l~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL 163 (230)
++...+|+|.+|||||+|++|++|+||++|+++||+|+++|+++||+++|++||.+|+|+|||++||+||+||||++|+|
T Consensus 4 ~~~~~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvl 83 (156)
T 3js9_A 4 HHHHHMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIW 83 (156)
T ss_dssp -----CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEE
T ss_pred ccccchhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEE
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccccchhhhhhhccCc---CCCCc-ccccccCCcCccccccCCChhchHhhhc
Q 026953 164 ISTLYYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 164 ~g~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
.|+ |+ +..||.+.||+ .+.|+ ||++||++.++|+|||||++|+|++|.+
T Consensus 84 eg~-na---V~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~ 136 (156)
T 3js9_A 84 EGP-EA---IKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSAEDAARECA 136 (156)
T ss_dssp EET-TH---HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHHH
T ss_pred ecc-ch---HHHHHHhcCCCCccccCCCCHHHHhCCCCCceeEEcCCCHHHHHHHHH
Confidence 996 55 55677788876 57788 9999999999999999999999999863
No 27
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=2.9e-40 Score=276.22 Aligned_cols=125 Identities=38% Similarity=0.631 Sum_probs=117.1
Q ss_pred ccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEeec
Q 026953 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGISTL 167 (230)
Q Consensus 88 ~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~~ 167 (230)
..|+||+|||||++++|++|+||++|+++||+|+++|++++|+++|++||.+|+|+|||++||+||+||||++|+|.|+
T Consensus 6 ~~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~- 84 (160)
T 2dxe_A 6 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGR- 84 (160)
T ss_dssp CEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEE-
T ss_pred cCCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecc-
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccchhhhhhhccCc---CCCCc-ccccccCCcCc---cccccCCChhchHhhhc
Q 026953 168 YYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQT---HWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 168 n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~r---NaVHgSDs~Eda~~~r~ 216 (230)
|+ +..||.++||+ .+.|+ ||++||.+..+ |+|||||++|+|++|..
T Consensus 85 ~a---V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~~~~N~vHgSDs~esA~rEi~ 137 (160)
T 2dxe_A 85 YA---VEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREIS 137 (160)
T ss_dssp TH---HHHHHHHHCCSSGGGSCTTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHHH
T ss_pred CH---HHHHHHHhCCCCCCcCCCCChHHHhcCCcccCcCceEEcCCCHHHHHHHHH
Confidence 55 56677888887 57788 99999999999 99999999999999874
No 28
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=4.5e-40 Score=281.90 Aligned_cols=133 Identities=32% Similarity=0.455 Sum_probs=119.3
Q ss_pred hhhhhhhhccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHH-----HhcCCCChHHHHHHhc
Q 026953 80 QEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYH-----DLKERPFFNGLCEFLS 154 (230)
Q Consensus 80 ~~~~~l~~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~-----~~~gkpff~~LV~~Mt 154 (230)
+.+..+...+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||. +|+|+|||++||+||+
T Consensus 17 ~~~~~~~~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mt 96 (190)
T 4dz6_A 17 QGPGSMSMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFIS 96 (190)
T ss_dssp ------CTTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHT
T ss_pred cCcccccchhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhc
Confidence 34445666789999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCcEEEEEEEeecccccchhhhhhhccCc---CCCCc-ccccccCCc----------CccccccCCChhchHhhhc
Q 026953 155 SGPVIAMVGISTLYYLFDINLFSLLKHST---FAGMG-RRGSYYVWS----------QTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 155 SGPvvALvL~g~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~----------~rNaVHgSDs~Eda~~~r~ 216 (230)
||||++|+|.|+ |+ +..||.++||+ .+.|+ ||++||++. ++|+|||||++|+|++|..
T Consensus 97 SGPvvamvleG~-na---V~~~R~l~GpTdP~~A~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~rEI~ 168 (190)
T 4dz6_A 97 NSPVFTFVVEGV-ES---IEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREIP 168 (190)
T ss_dssp TSEEEEEEEEEE-TH---HHHHHHHHCCSSGGGSCTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHHHHHH
T ss_pred CCCEEEEEEecC-CH---HHHHHHHcCCCChhhcCCCChHHHhcCChhhhccccccccceeEEcCCCHHHHHHHHH
Confidence 999999999997 55 56677888887 57888 999999999 9999999999999999874
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=2.7e-37 Score=265.50 Aligned_cols=125 Identities=34% Similarity=0.481 Sum_probs=116.9
Q ss_pred ccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHH-------------H----------------
Q 026953 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHY-------------H---------------- 138 (230)
Q Consensus 88 ~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY-------------~---------------- 138 (230)
.+|+||+|||||++++|++|+||++|+++||+|+++|++++|+++|++|| .
T Consensus 14 ~~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~ 93 (195)
T 1xqi_A 14 PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIG 93 (195)
T ss_dssp CCCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHS
T ss_pred hhhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhc
Confidence 46999999999999999999999999999999999999999999999999 8
Q ss_pred ----HhcCCCChHHHHHHhccCcEEEEEEEeecccccchhhhhhhccCc---CCCCc-ccccccCCcCc----------c
Q 026953 139 ----DLKERPFFNGLCEFLSSGPVIAMVGISTLYYLFDINLFSLLKHST---FAGMG-RRGSYYVWSQT----------H 200 (230)
Q Consensus 139 ----~~~gkpff~~LV~~MtSGPvvALvL~g~~n~l~~~~~~r~~~gp~---l~gPs-LRA~FG~d~~r----------N 200 (230)
+|+|+|||+.|++||+||||++|+|.|+ |+ +..||.++||+ .+.|+ ||++||.+..+ |
T Consensus 94 ~~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~-~a---V~~~R~l~GpTdP~~A~pgTIRg~fg~~~~~~~~~~~~~~~N 169 (195)
T 1xqi_A 94 TDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGN-RA---VEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFN 169 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSSCEEEEEEEST-TH---HHHHHHHHCCSCGGGSCTTSHHHHHCCCCHHHHHHTTSCCCC
T ss_pred cccchhcCCcchHHHHHHHcCCCEEEEEEech-hH---HHHHHHHhCCCCCCcCCCCchhHhhcCchhhhccccccccce
Confidence 9999999999999999999999999996 55 56677888887 57888 99999999999 9
Q ss_pred ccccCCChhchHhhhc
Q 026953 201 WSHRSSEIRTWNNQRR 216 (230)
Q Consensus 201 aVHgSDs~Eda~~~r~ 216 (230)
+|||||++|+|++|..
T Consensus 170 ~vHgSDS~esA~rEi~ 185 (195)
T 1xqi_A 170 LVHASDSPSEAEREIR 185 (195)
T ss_dssp SEEECSSHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHH
Confidence 9999999999999973
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.93 E-value=2.7e-26 Score=212.13 Aligned_cols=108 Identities=20% Similarity=0.195 Sum_probs=95.4
Q ss_pred hccceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhcCCCChHHHHHHhccCcEEEEEEEee
Q 026953 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGIST 166 (230)
Q Consensus 87 ~~~E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~gkpff~~LV~~MtSGPvvALvL~g~ 166 (230)
...|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|+ ++|++||+|||+++|+|.|+
T Consensus 233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG~ 307 (352)
T 3bh7_B 233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNGD 307 (352)
T ss_dssp SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEEST
T ss_pred ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEECc
Confidence 4679999999999999999999999999999999999999999999999999998 78999999999999999996
Q ss_pred cccccchhhhhhhccCcCCCCcccccccCCcCccccccCCChhchHhhhc
Q 026953 167 LYYLFDINLFSLLKHSTFAGMGRRGSYYVWSQTHWSHRSSEIRTWNNQRR 216 (230)
Q Consensus 167 ~n~l~~~~~~r~~~gp~l~gPsLRA~FG~d~~rNaVHgSDs~Eda~~~r~ 216 (230)
|+ +..+|.+.|.+- | .|+|||||++|+|++|.+
T Consensus 308 -~a---v~~~R~l~g~t~--p-----------gN~vHgSds~esA~~Ei~ 340 (352)
T 3bh7_B 308 -GA---VEVCQLIVNEIF--N-----------GTKMFVSESKETASGDVD 340 (352)
T ss_dssp -TH---HHHHHHHHHHHC--T-----------TSCEEECSCHHHHHHHHH
T ss_pred -CH---HHHHHHHhcCCC--C-----------CceEEecCCHHHHHHHHH
Confidence 55 444455555442 2 399999999999999874
No 31
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=58.62 E-value=12 Score=27.76 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=36.5
Q ss_pred ceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHH
Q 026953 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHY 137 (230)
Q Consensus 90 E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY 137 (230)
+..++++||..+.+ ..+|.+.+.+..-.|.++. .++.++|+++.
T Consensus 4 ~~~Ivv~~P~sy~D--a~~I~d~Lr~~~~VvvNL~--~ld~~~AqRiv 47 (87)
T 3p04_A 4 QSTIVPVELHSFED--AQVIGGAFRDGDAVVFDMS--LLSREEARRIV 47 (87)
T ss_dssp CCSCEEEECSSGGG--HHHHHHHHHTTCCEEEECT--TSCHHHHHHHH
T ss_pred CcEEEEEecCcHHH--HHHHHHHHHCCCEEEEECC--CCCHHHHHHHH
Confidence 45789999999987 7899999998888887776 56888888763
No 32
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=37.33 E-value=50 Score=26.08 Aligned_cols=30 Identities=13% Similarity=0.344 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCeEEEEEeeCCCHHHHHh
Q 026953 106 ISEIISRFERKGFKLVAIKIVVPSKEFAQK 135 (230)
Q Consensus 106 vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~e 135 (230)
..++.+.+++.||+++..+....+++....
T Consensus 194 ~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~ 223 (243)
T 3bkw_A 194 VGTTLNALIRSGFAIEHVEEFCPTDAQITA 223 (243)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCCHHHHHH
T ss_pred HHHHHHHHHHcCCEeeeeccCCCchHhhhh
Confidence 578889999999999999998888766543
No 33
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=30.37 E-value=29 Score=26.65 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHh------cCCCChHHHHHHhccCcE
Q 026953 107 SEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDL------KERPFFNGLCEFLSSGPV 158 (230)
Q Consensus 107 GeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~------~gkpff~~LV~~MtSGPv 158 (230)
.++...+..-|. .++.+++.++.... .|+-.|++.+..|.+||.
T Consensus 105 ~el~~~l~~~g~--------~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~ 154 (159)
T 3i5g_C 105 AEIRNVLKMLGE--------RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp HHHHHHHHHSSS--------CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSC
T ss_pred HHHHHHHHHhCC--------CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCC
Confidence 455555666564 57999999998754 346789999999999985
No 34
>3bgh_A Protein HPAA, putative neuraminyllactose-binding hemagglutinin; structural genomics, unknown function, PSI-2, protein struct initiative; 2.45A {Helicobacter pylori}
Probab=22.89 E-value=1e+02 Score=26.89 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=37.9
Q ss_pred ccceeEEEEcCcc-ccCCc------------HHHHHHHHHHcCCeEEEEEee-CCCHHHHHhHHHHh
Q 026953 88 EMERTFIAIKPDG-VQRGL------------ISEIISRFERKGFKLVAIKIV-VPSKEFAQKHYHDL 140 (230)
Q Consensus 88 ~~E~TLaIIKPda-v~~g~------------vGeII~~I~~~Gf~I~~~K~~-~Ls~e~A~eFY~~~ 140 (230)
...++++|++|+. +...+ +.+|-+.++++||.+...+.. .||.++-++-|...
T Consensus 34 ~n~~~I~ll~P~iq~sdNi~k~Y~~kF~~al~~qIq~il~krGY~v~~~~d~d~Lt~~~Kkk~ylvl 100 (236)
T 3bgh_A 34 KNSHLVVLIEPKIEINKVIPESYQKEFEKSLFLQLSSFLERKGYSVSQFKDASEIPQDIKEKALLVL 100 (236)
T ss_dssp CCCCEEEEECCEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTTCEEEEESSGGGCCHHHHHHCSEEE
T ss_pred ccceEEEEecccceecccccHHHHHHHHHHHHHHHHHHHHhCCceEeecCChhhCCHHHhhceEEEE
Confidence 4678999999995 33332 245556678889999996544 67888877777554
No 35
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=22.14 E-value=1.4e+02 Score=25.22 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=49.5
Q ss_pred ceeEEEEcCccccCCcHHHHHHHHHHcCCeEEEEEeeCCCHHHHHhHHHHhc--CC-----------CChHHHHHHhccC
Q 026953 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLK--ER-----------PFFNGLCEFLSSG 156 (230)
Q Consensus 90 E~TLaIIKPdav~~g~vGeII~~I~~~Gf~I~~~K~~~Ls~e~A~eFY~~~~--gk-----------pff~~LV~~MtSG 156 (230)
=..++|.-|+..+ -++.....++|..|..-|.+.++.+++++..+.-+ |. |.|..+-+.+.+|
T Consensus 66 vD~V~i~tp~~~H----~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g 141 (294)
T 1lc0_A 66 IDVAYICSESSSH----EDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREVLGK 141 (294)
T ss_dssp EEEEEECSCGGGH----HHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHTTC
T ss_pred CCEEEEeCCcHhH----HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhccHHHHHHHHHHhcC
Confidence 3567777788664 35666677789999999999999999999987653 32 3456677778889
Q ss_pred cEE
Q 026953 157 PVI 159 (230)
Q Consensus 157 Pvv 159 (230)
++.
T Consensus 142 ~i~ 144 (294)
T 1lc0_A 142 ELL 144 (294)
T ss_dssp CEE
T ss_pred Cee
Confidence 873
Done!