RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 026953
(230 letters)
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum
sativum} SCOP: d.58.6.1
Length = 182
Score = 157 bits (400), Expect = 5e-49
Identities = 69/102 (67%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
Query: 62 SRSWLSGAIAIPA-AAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKL 120
P Q AE+ERTFIAIKPDGVQRGLISEIISRFERKGFKL
Sbjct: 4 YHHHHHHDYDYPTTENLYFQGAMDPEAELERTFIAIKPDGVQRGLISEIISRFERKGFKL 63
Query: 121 VAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMV 162
V IK+++P+K+FAQ+HYHDLKERPFFNGLC+FLSSGPVIAMV
Sbjct: 64 VGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMV 105
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer-O transferase; 2.40A {Homo sapiens} SCOP:
d.58.6.1
Length = 162
Score = 156 bits (397), Expect = 9e-49
Identities = 39/87 (44%), Positives = 58/87 (66%)
Query: 76 AYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQK 135
+ L + H ERT +A+KPDGVQR L+ ++I RFER+GF LV +K++ + +
Sbjct: 11 SSGLVPRGSHMGTRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAE 70
Query: 136 HYHDLKERPFFNGLCEFLSSGPVIAMV 162
HY DL+ +PF+ L ++SSGPV+AMV
Sbjct: 71 HYQDLRRKPFYPALIRYMSSGPVVAMV 97
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding,
transferase, tumor suppressor; 2.10A {Homo sapiens}
Length = 172
Score = 156 bits (396), Expect = 1e-48
Identities = 50/87 (57%), Positives = 66/87 (75%)
Query: 76 AYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQK 135
+ L + H A ERTFIAIKPDGVQRGL+ EII RFE+KGF+LV +K + S++ ++
Sbjct: 11 SSGLVPRGSHMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKE 70
Query: 136 HYHDLKERPFFNGLCEFLSSGPVIAMV 162
HY DLK+RPFF GL +++ SGPV+AMV
Sbjct: 71 HYVDLKDRPFFAGLVKYMHSGPVVAMV 97
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A*
4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Length = 161
Score = 155 bits (395), Expect = 1e-48
Identities = 44/84 (52%), Positives = 61/84 (72%)
Query: 79 LQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYH 138
+ H ERTFIA+KPDGVQR L+ EII RFE KG+KLV +K++ P++E A++HY
Sbjct: 1 MAHHHHHHMPSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYI 60
Query: 139 DLKERPFFNGLCEFLSSGPVIAMV 162
DL +PF++GL + SSGP++ MV
Sbjct: 61 DLASKPFYSGLVSYFSSGPIVGMV 84
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid,
seattle structural genomics center for infect disease,
babesiosis; 2.50A {Babesia bovis}
Length = 156
Score = 155 bits (394), Expect = 2e-48
Identities = 42/80 (52%), Positives = 55/80 (68%)
Query: 83 EVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKE 142
H MERT+I +KPDGVQRGLI EI+ RFE KG KL+A K P+ + +HY + K+
Sbjct: 3 HHHHHHMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKD 62
Query: 143 RPFFNGLCEFLSSGPVIAMV 162
+PFF LC+F+S GPV M+
Sbjct: 63 KPFFKDLCDFISHGPVFCMI 82
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative,
structural genomics, SGPP; 3.05A {Plasmodium falciparum}
SCOP: d.58.6.1
Length = 157
Score = 155 bits (394), Expect = 2e-48
Identities = 43/80 (53%), Positives = 61/80 (76%)
Query: 83 EVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKE 142
H ME++FI IKPDGVQRGL+ II RFE+KG+KL+AIK++ P++E ++HY +L +
Sbjct: 3 HHHHHHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSD 62
Query: 143 RPFFNGLCEFLSSGPVIAMV 162
+PFF L ++S GPV+AMV
Sbjct: 63 QPFFKNLVAYISKGPVVAMV 82
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A
{Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Length = 153
Score = 154 bits (392), Expect = 4e-48
Identities = 40/76 (52%), Positives = 57/76 (75%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
++E T+I +KPDG+QRGL+ EIISRFE+KGFKL+ +K+ KE A++HY DL + FF
Sbjct: 3 EDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFF 62
Query: 147 NGLCEFLSSGPVIAMV 162
L E+++SGPV+ M
Sbjct: 63 PNLIEYITSGPVVCMA 78
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23
GEN, hexamer, activator, oncogene, ATP-binding, cell
cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens}
SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A
1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A*
1ndl_A*
Length = 151
Score = 154 bits (391), Expect = 5e-48
Identities = 50/76 (65%), Positives = 65/76 (85%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
A +ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K + S+E ++HY DLK+RPFF
Sbjct: 1 ANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFF 60
Query: 147 NGLCEFLSSGPVIAMV 162
GL ++++SGPV+AMV
Sbjct: 61 PGLVKYMNSGPVVAMV 76
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Length = 137
Score = 153 bits (390), Expect = 6e-48
Identities = 44/74 (59%), Positives = 63/74 (85%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
MERTF+ IKPDGV+RGL+ EI++RFERKGF++ A+K++ S+E A++HY + +E+PFF G
Sbjct: 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPG 60
Query: 149 LCEFLSSGPVIAMV 162
L F++SGPV+AMV
Sbjct: 61 LVRFITSGPVVAMV 74
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, encepha cuniculi, structural
genomics; 2.08A {Encephalitozoon cuniculi}
Length = 151
Score = 154 bits (391), Expect = 6e-48
Identities = 40/76 (52%), Positives = 49/76 (64%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
MERTFI IKPD ++R LIS II RFE KG L A K V+P +E + HY L PFF
Sbjct: 3 GSMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFF 62
Query: 147 NGLCEFLSSGPVIAMV 162
+ + E + SG V+AMV
Sbjct: 63 SEMVEDMMSGMVLAMV 78
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate,
transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Length = 149
Score = 153 bits (390), Expect = 7e-48
Identities = 43/74 (58%), Positives = 58/74 (78%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ME+TFI IKPDGVQRGLI E+I RFE+KGF L +K++ + FA+KHY DL + FF+G
Sbjct: 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60
Query: 149 LCEFLSSGPVIAMV 162
L +++ SGPV+AM+
Sbjct: 61 LVDYIVSGPVVAMI 74
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza
sativa} SCOP: d.58.6.1
Length = 150
Score = 153 bits (390), Expect = 7e-48
Identities = 46/74 (62%), Positives = 59/74 (79%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ME++FI IKPDGVQRGLI +IISRFE+KGF L +K + + FAQ+HY DL ++PFF G
Sbjct: 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPG 61
Query: 149 LCEFLSSGPVIAMV 162
L E++ SGPV+AMV
Sbjct: 62 LVEYIISGPVVAMV 75
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein
family; HET: ADP; 2.22A {Staphylococcus aureus subsp}
PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Length = 157
Score = 153 bits (390), Expect = 1e-47
Identities = 41/74 (55%), Positives = 52/74 (70%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
MERTF+ IKPD VQR LI E+ISR ERKG KLV K++ E A+ HY + + +PF+N
Sbjct: 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYND 60
Query: 149 LCEFLSSGPVIAMV 162
L F++S PV AMV
Sbjct: 61 LISFITSAPVFAMV 74
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding,
metal-binding, phosphoprotein, nucleotide metabolism,
cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Length = 148
Score = 153 bits (388), Expect = 1e-47
Identities = 40/74 (54%), Positives = 57/74 (77%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ME+TF+ +KPDGVQR I EI++RFE+KGF+LV K++ + E A +HY + +E+PFF
Sbjct: 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGE 60
Query: 149 LCEFLSSGPVIAMV 162
L +F++SGPV AMV
Sbjct: 61 LVDFITSGPVFAMV 74
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A
{Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R
3pj9_A
Length = 144
Score = 153 bits (388), Expect = 1e-47
Identities = 38/74 (51%), Positives = 51/74 (68%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
+ERT IKPDG+++G+I +IISRFE KG K VAI++ S+ A+ Y K RPFF
Sbjct: 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKD 61
Query: 149 LCEFLSSGPVIAMV 162
L +F+ SGPV+ MV
Sbjct: 62 LVQFMISGPVVLMV 75
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta
sandwich, ATP-binding, magnesium, metal-B mitochondrion;
3.10A {Saccharomyces cerevisiae}
Length = 161
Score = 153 bits (389), Expect = 1e-47
Identities = 41/77 (53%), Positives = 60/77 (77%)
Query: 86 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPF 145
+++ ERTFIA+KPDGVQRGL+S+I+SRFE+KG+KLVAIK+V + ++HY + +PF
Sbjct: 10 SSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPF 69
Query: 146 FNGLCEFLSSGPVIAMV 162
F + F+ SGP++A V
Sbjct: 70 FPKMVSFMKSGPILATV 86
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, giardiasis; 2.65A {Giardia lamblia}
Length = 155
Score = 153 bits (388), Expect = 1e-47
Identities = 51/74 (68%), Positives = 60/74 (81%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ERTF+ +KPDGVQRGL+ EIISRFER+GFKLVA+K VPSK ++HY + RPFF G
Sbjct: 7 RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAG 66
Query: 149 LCEFLSSGPVIAMV 162
LC+FLSSGPV AMV
Sbjct: 67 LCKFLSSGPVCAMV 80
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP;
2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB:
2az1_A 2zua_A
Length = 164
Score = 153 bits (389), Expect = 2e-47
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 86 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPF 145
ERTF+ +KPDGVQRGLI +I++R E KG K+V K + +E A +HY + +++PF
Sbjct: 5 TDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPF 64
Query: 146 FNGLCEFLSSGPVIAMV 162
F+GL F++SGPV AMV
Sbjct: 65 FDGLVSFITSGPVFAMV 81
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer,
signaling protein,transferase; 1.62A {Escherichia coli}
Length = 142
Score = 152 bits (386), Expect = 2e-47
Identities = 32/74 (43%), Positives = 49/74 (66%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
+ERTF IKP+ V + +I I +RFE GFK+V K++ + E A+ Y + +PFF+G
Sbjct: 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDG 61
Query: 149 LCEFLSSGPVIAMV 162
L EF++SGP++ V
Sbjct: 62 LVEFMTSGPIVVSV 75
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate,
transferase; 2.60A {Mycobacterium tuberculosis} SCOP:
d.58.6.1
Length = 136
Score = 152 bits (386), Expect = 2e-47
Identities = 37/74 (50%), Positives = 52/74 (70%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ERT + IKPDG++R LI EIISR ERKG + A+++ S E A +HY + + +PFF
Sbjct: 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGS 61
Query: 149 LCEFLSSGPVIAMV 162
L EF++SGPV+A +
Sbjct: 62 LLEFITSGPVVAAI 75
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians,
transferase; 2.20A {Virgibacillus halodenitrificans}
SCOP: d.58.6.1
Length = 150
Score = 152 bits (386), Expect = 2e-47
Identities = 40/74 (54%), Positives = 50/74 (67%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ERTF+ +KPDGVQR L+ E++ RFE KG KL K++V SK+ A HY +L PFF G
Sbjct: 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 61
Query: 149 LCEFLSSGPVIAMV 162
L +SGPV AMV
Sbjct: 62 LVGGATSGPVFAMV 75
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural
genomics, NPPSFA, NAT project on protein structural and
functional analyses; HET: GDP; 1.70A {Pyrococcus
horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A*
2dy9_A* 2dya_A*
Length = 160
Score = 152 bits (387), Expect = 2e-47
Identities = 39/76 (51%), Positives = 56/76 (73%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
+E ERT + IKPD V RGLI EIISRFE+KG K+V +K++ +E A+KHY + +E+PFF
Sbjct: 5 SETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFF 64
Query: 147 NGLCEFLSSGPVIAMV 162
L ++++ PV+ MV
Sbjct: 65 KALIDYITKTPVVVMV 80
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN
hexamer structure, ATP-binding, magnesium, metal-
nucleotide metabolism; HET: TNM TNV; 1.65A
{Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A*
1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A*
1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A*
1hhq_A 1lwx_A* 1npk_A ...
Length = 155
Score = 151 bits (385), Expect = 4e-47
Identities = 46/74 (62%), Positives = 61/74 (82%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF G
Sbjct: 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 67
Query: 149 LCEFLSSGPVIAMV 162
L F++SGPV+AMV
Sbjct: 68 LVSFITSGPVVAMV 81
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis,
transferase, struc genomics, structural genomics
consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP:
d.58.6.1
Length = 169
Score = 151 bits (385), Expect = 6e-47
Identities = 45/74 (60%), Positives = 62/74 (83%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ERTF+A+KPDGVQR L+ EI+ RFERKGFKLVA+K+V S+E ++HY +L+ERPF+
Sbjct: 21 HERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGR 80
Query: 149 LCEFLSSGPVIAMV 162
L ++++SGPV+AMV
Sbjct: 81 LVKYMASGPVVAMV 94
>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center
for infectious disease, S DAMP, niaid; HET: DA; 2.00A
{Burkholderia thailandensis} PDB: 4dut_A*
Length = 145
Score = 151 bits (383), Expect = 6e-47
Identities = 35/74 (47%), Positives = 46/74 (62%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
+ERT IKPD V + +I +I SRFE G K+VA ++ S+ A+K Y ERPFF
Sbjct: 7 LERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKD 66
Query: 149 LCEFLSSGPVIAMV 162
L EF+ SGPV+ V
Sbjct: 67 LVEFMISGPVMIQV 80
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A
{Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Length = 142
Score = 150 bits (382), Expect = 8e-47
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
+ERT I +KPD +++G + +I+ RF ++GF++ A+K+ + E A + Y+ +ERPFF
Sbjct: 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQE 62
Query: 149 LCEFLSSGPVIAMV 162
L EF+SSGPV+A V
Sbjct: 63 LVEFMSSGPVVAAV 76
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase
nucleotide binding, ATP-binding, magnesium,
metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga
mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A*
3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A*
2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A*
3gpa_A* ...
Length = 146
Score = 149 bits (379), Expect = 3e-46
Identities = 30/77 (38%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVP-SKEFAQKHYHDLKERPF 145
A ++RT + IKPD +R L++EI+ R E+K FK+V++K + ++HY + E+ +
Sbjct: 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSY 63
Query: 146 FNGLCEFLSSGPVIAMV 162
FN C+F+ SGP+I++V
Sbjct: 64 FNDNCDFMVSGPIISIV 80
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition
state mimic, transition state analog, transferas; HET:
ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Length = 190
Score = 146 bits (369), Expect = 3e-44
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 80 QEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHY-- 137
Q + +++T +KPDGV+RGLI +++SRFER G K+VA K+++ + A+KHY
Sbjct: 17 QGPGSMSMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLY 76
Query: 138 ---HDLKERPFFNGLCEFLSSGPVIAMV 162
+N L +F+S+ PV V
Sbjct: 77 DDIVFRHSEAVWNSLIKFISNSPVFTFV 104
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin
fold, transferase; HET: PGE; 2.50A {Pyrobaculum
aerophilum} SCOP: d.58.6.1
Length = 195
Score = 126 bits (317), Expect = 2e-36
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 33/109 (30%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKE---- 142
+E+T + +KPD V RGL+ EIISRF++ G K+VA+K+V S E ++ Y +E
Sbjct: 13 MPVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQS 72
Query: 143 -----------------------------RPFFNGLCEFLSSGPVIAMV 162
R L ++++SGP + MV
Sbjct: 73 AGQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMV 121
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.42
Identities = 27/174 (15%), Positives = 57/174 (32%), Gaps = 58/174 (33%)
Query: 6 VRSASRAATARS--LLSA-------SKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSF--G 54
+RS + AT S L++A S S F+ S A+T F G
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWES-FFV-----SVRKAITVL---------FFIG 307
Query: 55 RAGSSTASRSWLSGAIAIPAA--AYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISR 112
+ ++P + +L+ E + M ++I + + + + +++
Sbjct: 308 VRCYEAYPNT------SLPPSILEDSLENNEGVPSPM----LSIS--NLTQEQVQDYVNK 355
Query: 113 FERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVGIST 166
++I + NG + SGP ++ G++
Sbjct: 356 TNSHLPAGKQVEISL------------------VNGAKNLVVSGPPQSLYGLNL 391
Score = 29.2 bits (65), Expect = 1.5
Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 32/136 (23%)
Query: 28 YSEGRAVSAAAAV-TFSGKLPYLVSSFGRAGSSTASRSWLS----GAIAI-PAAAYTLQE 81
Y+ A+++ A V + + +V G R L G IAI P
Sbjct: 1767 YA---ALASLADVMSIESLV-EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 82 QEVHAAEMERTFIAIKPDGV-----------Q-------RGL--ISEIISRFERKGFKLV 121
QE +ER + + + Q R L ++ +++ + + ++
Sbjct: 1823 QEALQYVVER--VGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Query: 122 AIKIVVPSKEFAQKHY 137
++ + +E +
Sbjct: 1881 ELQKSLSLEEVEGHLF 1896
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 28.7 bits (64), Expect = 1.3
Identities = 10/78 (12%), Positives = 17/78 (21%), Gaps = 23/78 (29%)
Query: 81 EQEVHAAEMERTFIAIKPDG---------VQRGL-ISEIISRFERKGFKLVAIKIVVPSK 130
+E A +E ++ PD + F G + +
Sbjct: 182 SREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFM------- 234
Query: 131 EFAQKHYHDLKERPFFNG 148
R F G
Sbjct: 235 ------PGGPSGRGLFTG 246
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.8 bits (61), Expect = 2.8
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 17/61 (27%)
Query: 109 IISRFER-----KGFK--LVA------IKIVVPSKEFAQKHYHDLKERPF----FNGLCE 151
I+S E KG K ++A I I +P E +D+ N C
Sbjct: 147 IVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCT 206
Query: 152 F 152
F
Sbjct: 207 F 207
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT,
endosomal, trafficking, protein complex, transport
protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54
a.4.5.54 PDB: 1w7p_A
Length = 233
Score = 27.6 bits (61), Expect = 3.7
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 130 KEFAQKHYHDLKERPF----FNGLC-----EFLSSGPVIA-MVGISTLYY 169
EFA+KH +L+ P F +C + LS + ++ YY
Sbjct: 44 VEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSLFDRDKHLFTVNDFYY 93
>3mfn_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative, midwest center for
structural genomics; HET: MSE; 2.02A {Dyadobacter
fermentans}
Length = 157
Score = 27.1 bits (59), Expect = 3.8
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 15 ARSLLS--ASKNSRFYSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSW 65
A+ +L K FY + + V A +SG L L FG+ W
Sbjct: 45 AKDILRDKGGKEDGFYQDSKYVKMAGHTAYSGVLFALDHYFGKKTKGRKDVDW 97
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for
infectious disease, ssgcid; 2.90A {Burkholderia
pseudomallei 1655}
Length = 298
Score = 27.3 bits (61), Expect = 4.1
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 75 AAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFE 114
A Y + ++ DG Q+ + + +R +
Sbjct: 236 ALYCCGAYRAMNKAALNFYETVRRDGTQKAAVPTMQTRAQ 275
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural
genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB:
1vdx_A 2fyh_A
Length = 184
Score = 26.7 bits (59), Expect = 4.5
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 91 RTFIAIKPDGVQRGLISEIISRFERKGFKL 120
R FIAI + R + K K+
Sbjct: 2 RAFIAIDVNESVRDSLVRAQDYIGSKEAKI 31
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center
for structural GENO infectious diseases, csgid; 2.00A
{Bacillus anthracis str} PDB: 3kz2_A
Length = 305
Score = 26.9 bits (60), Expect = 5.0
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 75 AAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFE 114
Y + V A E F IK G Q+ +S + +R E
Sbjct: 240 VIYPVTSLRVAAKAYENVFTLIKETGSQKDALSNMQTRSE 279
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 26.6 bits (59), Expect = 6.0
Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 23/73 (31%)
Query: 83 EVHAAEMERTFIAIKPDG---------VQRGL-ISEIISRFERKGFKLVAIKIVVPSKEF 132
E + E TF DG QR + I+ GF++ A+
Sbjct: 170 EPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAV--------- 220
Query: 133 AQKHYHDLKERPF 145
D K
Sbjct: 221 ----TGDFKSDAP 229
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein
transport, transc transcription regulation, transport,
endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Length = 234
Score = 26.5 bits (58), Expect = 6.9
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 130 KEFAQKHYHDLKERPF----FNGLCEFLSSGPVIA-------MVGISTLYY 169
+EFA KH ++++ P F +C + P+ + M+G+ YY
Sbjct: 24 EEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYY 74
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor
complex, isocitrate lyase superfamily; HET: ICT; 1.60A
{Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A
1o5q_A
Length = 295
Score = 26.5 bits (59), Expect = 7.2
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 75 AAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFE 114
A Y L E + ++ +G Q+ +I + +R E
Sbjct: 232 ALYPLSAFRAMNRAAEHVYNVLRQEGTQKSVIDTMQTRNE 271
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31,
alpha-glucosidase membrane, disease mutation, disulfide
bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL;
2.15A {Homo sapiens} PDB: 3lpo_A*
Length = 898
Score = 26.7 bits (59), Expect = 8.6
Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 5/25 (20%)
Query: 182 STFAGMGRRGSYYVWS---QTHWSH 203
STFAG GR + W W
Sbjct: 556 STFAGSGRHAA--HWLGDNTASWEQ 578
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 26.6 bits (58), Expect = 8.6
Identities = 21/149 (14%), Positives = 40/149 (26%), Gaps = 20/149 (13%)
Query: 46 LPYLVSSFGRAGSSTASRSWLSGAIAIPA------------AAYTLQEQEVHAAEMERTF 93
YL F R A ++ + LQ + +
Sbjct: 64 FEYLNDCFRRNQQQKRITKNKPNAESLHSTFQEIDRLVIGYGVVALQIENFCMNGAFINY 123
Query: 94 IA--IKPDGVQRGLISEIISRFERKGFKLVAIKIVVP------SKEFAQKHYHDLKERPF 145
I + +S+II R +G L + V P +K + ++
Sbjct: 124 ITGIVSNVNSYTDFLSQIIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESVIYNN 183
Query: 146 FNGLCEFLSSGPVIAMVGISTLYYLFDIN 174
+ E + IA + + D +
Sbjct: 184 VLTIFELFVTFKPIAEIFTKIDGFFADYS 212
>1zlp_A PSR132, petal death protein; TIM-barrel, helix
swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate
lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus
caryophyllus}
Length = 318
Score = 26.2 bits (58), Expect = 8.8
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 75 AAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFE 114
A++L A + +K G R + ++ + E
Sbjct: 254 IAHSLTAVYATARALVNIMKILKEKGTTRDDLDQMATFSE 293
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase,
transferase; HET: COA; 2.67A {Maricaulis maris} PDB:
3s7y_A 3s6h_A*
Length = 460
Score = 26.2 bits (58), Expect = 9.5
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 4 QIVRSASRAATARSLLSASKNSRFY-SEGRAVSAAAAVTFSGKLPYL 49
+V++A + R + +E AAA T YL
Sbjct: 330 NLVKAAFGRPAVEGYWDRLRVDRAFVTES--YRAAAITTRLDGWVYL 374
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.131 0.391
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,483,693
Number of extensions: 205488
Number of successful extensions: 523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 52
Length of query: 230
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 140
Effective length of database: 4,188,903
Effective search space: 586446420
Effective search space used: 586446420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)