RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026953
(230 letters)
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 108 bits (271), Expect = 1e-30
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
++E T+I +KPDG+QRGL+ EIISRFE+KGFKL+ +K+ KE A++HY DL + FF
Sbjct: 3 EDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFF 62
Query: 147 NGLCEFLSSGPVIAMVGISTLYYLFDINLFSLLKHSTFAGMGR-RGSYYVWSQTHWSHRS 205
L E+++SGPV+ M + + A G RG V + + H S
Sbjct: 63 PNLIEYITSGPVVCMA-WEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGS 121
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 105 bits (264), Expect = 1e-29
Identities = 66/75 (88%), Positives = 74/75 (98%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
AE+ERTFIAIKPDGVQRGLISEIISRFERKGFKLV IK+++P+K+FAQ+HYHDLKERPFF
Sbjct: 1 AELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFF 60
Query: 147 NGLCEFLSSGPVIAM 161
NGLC+FLSSGPVIAM
Sbjct: 61 NGLCDFLSSGPVIAM 75
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 105 bits (262), Expect = 3e-29
Identities = 49/75 (65%), Positives = 64/75 (85%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
A +ERTFIAIKPDGVQRGL+ EII RFE+KGF+LVA+K + S+E ++HY DLK+RPFF
Sbjct: 1 ANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFF 60
Query: 147 NGLCEFLSSGPVIAM 161
GL ++++SGPV+AM
Sbjct: 61 PGLVKYMNSGPVVAM 75
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 104 bits (260), Expect = 5e-29
Identities = 44/75 (58%), Positives = 61/75 (81%)
Query: 87 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFF 146
ERTF+A+KPDGVQR L+ EI+ RFERKGFKLVA+K+V S+E ++HY +L+ERPF+
Sbjct: 2 GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFY 61
Query: 147 NGLCEFLSSGPVIAM 161
L ++++SGPV+AM
Sbjct: 62 GRLVKYMASGPVVAM 76
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 103 bits (259), Expect = 7e-29
Identities = 44/74 (59%), Positives = 63/74 (85%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
MERTF+ IKPDGV+RGL+ EI++RFERKGF++ A+K++ S+E A++HY + +E+PFF G
Sbjct: 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPG 60
Query: 149 LCEFLSSGPVIAMV 162
L F++SGPV+AMV
Sbjct: 61 LVRFITSGPVVAMV 74
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 102 bits (255), Expect = 3e-28
Identities = 51/130 (39%), Positives = 72/130 (55%), Gaps = 7/130 (5%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ME++FI IKPDGVQRGL+ II RFE+KG+KL+AIK++ P++E ++HY +L ++PFF
Sbjct: 1 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKN 60
Query: 149 LCEFLSSGPVIAMVGISTLYYLFDINLFSLLKHSTFAGMGRRGSYYVWSQTHWSHRSS-- 206
L ++S GPV+AMV L T RG + + + H S
Sbjct: 61 LVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSV 120
Query: 207 -----EIRTW 211
EI W
Sbjct: 121 ASANKEINIW 130
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 103 bits (257), Expect = 3e-28
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 33/107 (30%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKE------ 142
+E+T + +KPD V RGL+ EIISRF++ G K+VA+K+V S E ++ Y +E
Sbjct: 2 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAG 61
Query: 143 ---------------------------RPFFNGLCEFLSSGPVIAMV 162
R L ++++SGP + MV
Sbjct: 62 QKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMV 108
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 101 bits (254), Expect = 4e-28
Identities = 38/74 (51%), Positives = 51/74 (68%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
+ERT IKPDG+++G+I +IISRFE KG K VAI++ S+ A+ Y K RPFF
Sbjct: 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKD 61
Query: 149 LCEFLSSGPVIAMV 162
L +F+ SGPV+ MV
Sbjct: 62 LVQFMISGPVVLMV 75
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 97.8 bits (243), Expect = 2e-26
Identities = 45/73 (61%), Positives = 60/73 (82%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF G
Sbjct: 3 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGG 62
Query: 149 LCEFLSSGPVIAM 161
L F++SGPV+AM
Sbjct: 63 LVSFITSGPVVAM 75
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 96.6 bits (240), Expect = 6e-26
Identities = 38/72 (52%), Positives = 54/72 (75%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+ +KPDGVQRGLI +I++R E KG K+V K + +E A +HY + +++PFF+GL
Sbjct: 3 ERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGL 62
Query: 150 CEFLSSGPVIAM 161
F++SGPV AM
Sbjct: 63 VSFITSGPVFAM 74
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 96.7 bits (240), Expect = 6e-26
Identities = 44/88 (50%), Positives = 60/88 (68%)
Query: 89 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNG 148
ME+TFI IKPDGVQRGLI E+I RFE+KGF L +K++ + FA+KHY DL + FF+G
Sbjct: 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60
Query: 149 LCEFLSSGPVIAMVGISTLYYLFDINLF 176
L +++ SGPV+AM+ L +
Sbjct: 61 LVDYIVSGPVVAMIWEGKNVVLTGRKII 88
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 94.3 bits (234), Expect = 4e-25
Identities = 37/77 (48%), Positives = 54/77 (70%)
Query: 85 HAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERP 144
H ERT +A+KPDGVQR L+ ++I RFER+GF LV +K++ + +HY DL+ +P
Sbjct: 1 HMGTRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKP 60
Query: 145 FFNGLCEFLSSGPVIAM 161
F+ L ++SSGPV+AM
Sbjct: 61 FYPALIRYMSSGPVVAM 77
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 90.9 bits (225), Expect = 8e-24
Identities = 39/75 (52%), Positives = 55/75 (73%)
Query: 88 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFN 147
E ERT + IKPD V RGLI EIISRFE+KG K+V +K++ +E A+KHY + +E+PFF
Sbjct: 1 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFK 60
Query: 148 GLCEFLSSGPVIAMV 162
L ++++ PV+ MV
Sbjct: 61 ALIDYITKTPVVVMV 75
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 90.5 bits (224), Expect = 1e-23
Identities = 39/72 (54%), Positives = 49/72 (68%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERTF+ +KPDGVQR L+ E++ RFE KG KL K++V SK+ A HY +L PFF GL
Sbjct: 2 ERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGL 61
Query: 150 CEFLSSGPVIAM 161
+SGPV AM
Sbjct: 62 VGGATSGPVFAM 73
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 89.7 bits (222), Expect = 1e-23
Identities = 37/72 (51%), Positives = 51/72 (70%)
Query: 90 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGL 149
ERT + IKPDG++R LI EIISR ERKG + A+++ S E A +HY + + +PFF L
Sbjct: 2 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 61
Query: 150 CEFLSSGPVIAM 161
EF++SGPV+A
Sbjct: 62 LEFITSGPVVAA 73
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 82.4 bits (203), Expect = 7e-21
Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 91 RTFIAIKPDGVQRGLISEIISRFERKGFKLVAIK-IVVPSKEFAQKHYHDLKERPFFNGL 149
RT + IKPD +R L++EI+ R E+K FK+V++K + ++HY + E+ +FN
Sbjct: 2 RTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDN 61
Query: 150 CEFLSSGPVIAM 161
C+F+ SGP+I++
Sbjct: 62 CDFMVSGPIISI 73
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 145
Score = 25.8 bits (57), Expect = 2.9
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 130 KEFAQKHYHDLKERP-F---FNGLC-----EFLSSGPVIA-MVGISTLYY 169
EFA+KH +L+ P F F +C + LS + ++ YY
Sbjct: 25 VEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSLFDRDKHLFTVNDFYY 74
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 308
Score = 26.0 bits (56), Expect = 4.7
Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 20/137 (14%)
Query: 105 LISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLC-----------EFL 153
L++EI R + ++ P + A + + ++ + F + + +
Sbjct: 5 LVAEIAERHAGP------VVLIAPDMQNALRLHDEISQ--FTDQMVMNLADWETLPYDSF 56
Query: 154 SSGPVIAMVGISTLYYLFDINLFSLL-KHSTFAGMGRRGSYYVWSQTHWSHRSSEIRTWN 212
S I +STLY L + L+ +T S+ R
Sbjct: 57 SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 116
Query: 213 NQRRSSCCCWKVYFLTE 229
+ S V + E
Sbjct: 117 RTQLDSAGYRHVDQVME 133
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine
decarboxylase (ODC) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 177
Score = 25.4 bits (55), Expect = 5.0
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 164 ISTLYYLFDINLFSLLKHSTFAGMGRRGSYYVWSQTHWS 202
+ ++ +++ STF G R YYV S+ W
Sbjct: 136 VGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQ 174
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase
catalytic domain {Archaeon Pyrococcus horikoshii [TaxId:
53953]}
Length = 188
Score = 25.1 bits (54), Expect = 6.0
Identities = 5/42 (11%), Positives = 9/42 (21%), Gaps = 1/42 (2%)
Query: 185 AGMGRRGSYYVWSQTHWSHRSSEIRTWNNQRRSSCCCWKVYF 226
G G + S S + Q+ +
Sbjct: 44 MGHGALNRKW-ESPEGGLWLSIVLSPKVPQKDLPKIVFLGAV 84
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 25.5 bits (55), Expect = 6.0
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 105 LISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKE 142
IS +I++ + ++ +K A + Y +LKE
Sbjct: 47 TISNVIAQVNKP------TLVIAHNKTLAGQLYSELKE 78
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
halodurans [TaxId: 86665]}
Length = 224
Score = 25.3 bits (55), Expect = 6.7
Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 19/121 (15%)
Query: 25 SRFYSEGRAVSAAAAVTFSGKLPYLVSSFG----------RAGSSTASRS-WLSGAIAIP 73
S+ + + A V + S A+RS +L +
Sbjct: 106 SKIVENEKIMRAILEVVKEKNAFIIDSGTSPHSLIPQLAEELEVPYATRSIFLDNTHSSR 165
Query: 74 AAAYTLQEQEVHAAEMERTFIAI------KPDGVQRGLISEIISRFERKGFKLVAIKIVV 127
+ A+ I I + I ++ F+ + +LV + ++
Sbjct: 166 KEVIKNMRKLAKKAKQGSEPIGIGHVGVRGDETYAG--IRSMLDEFQAESIQLVPVSQLL 223
Query: 128 P 128
P
Sbjct: 224 P 224
>d1iuha_ d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus thermophilus
[TaxId: 274]}
Length = 183
Score = 24.7 bits (53), Expect = 8.6
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 91 RTFIAIKPDGVQRGLISEIISRF-ERKGFKLVA 122
R F A+ R + E ++ +G+K V
Sbjct: 2 RLFYAVFLPEEVRAALVEAQTKVRPFRGWKPVP 34
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 258
Score = 24.7 bits (53), Expect = 9.8
Identities = 4/37 (10%), Positives = 9/37 (24%)
Query: 37 AAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIP 73
SG +P + G ++ +
Sbjct: 152 RRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMV 188
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.131 0.391
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 835,411
Number of extensions: 36713
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 28
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)