BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026954
METERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVY
QKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQT
GGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEM
TKKGYTVFGYLPLVPIDDIAKAFKQSEAPKKEDAPEKEDAKEKDSSSDSD

High Scoring Gene Products

Symbol, full name Information P value
AT1G67360 protein from Arabidopsis thaliana 5.1e-58
AT3G05500 protein from Arabidopsis thaliana 1.5e-28
AT2G47780 protein from Arabidopsis thaliana 3.0e-21

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026954
        (230 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2019579 - symbol:AT1G67360 species:3702 "Arabi...   596  5.1e-58   1
TAIR|locus:2079782 - symbol:AT3G05500 species:3702 "Arabi...   318  1.5e-28   1
TAIR|locus:2043373 - symbol:AT2G47780 "AT2G47780" species...   249  3.0e-21   1


>TAIR|locus:2019579 [details] [associations]
            symbol:AT1G67360 species:3702 "Arabidopsis thaliana"
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0005773 "vacuole"
            evidence=IDA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005773
            EMBL:AC002130 EMBL:AY050911 EMBL:AY091413 EMBL:AY136297
            EMBL:BT000410 EMBL:AY085233 IPI:IPI00533352 PIR:A96697
            RefSeq:NP_176904.1 RefSeq:NP_849856.1 UniGene:At.24217
            UniGene:At.35662 IntAct:Q9FYF7 STRING:Q9FYF7 PaxDb:Q9FYF7
            PRIDE:Q9FYF7 EnsemblPlants:AT1G67360.1 EnsemblPlants:AT1G67360.2
            GeneID:843057 KEGG:ath:AT1G67360 TAIR:At1g67360 eggNOG:NOG313747
            HOGENOM:HOG000029051 InParanoid:Q9FYF7 OMA:DEHAPPM PhylomeDB:Q9FYF7
            ProtClustDB:CLSN2681981 Genevestigator:Q9FYF7 GermOnline:AT1G67360
            InterPro:IPR008802 Pfam:PF05755 Uniprot:Q9FYF7
        Length = 240

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 118/208 (56%), Positives = 146/208 (70%)

Query:     1 METERKKQE---LRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVG 57
             METE+K  +   L+HL F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV 
Sbjct:     1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVT 60

Query:    58 PVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSE 117
             PVYQKFK VP            E S KFDEHAPP+AK+V +Q H LI  A++KAQ+ V E
Sbjct:    61 PVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKE 120

Query:   118 AQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLV 177
             A+TGGP+AA +YAA E K  +VTNSVK W KLN Y   H M D A+P AA +S +YN LV
Sbjct:   121 ARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLV 180

Query:   178 VEMTKKGYTVFGYLPLVPIDDIAKAFKQ 205
              +MT  GY++ GYLPLVP+DDI KA+++
Sbjct:   181 TDMTNMGYSLVGYLPLVPVDDIVKAYEK 208


>TAIR|locus:2079782 [details] [associations]
            symbol:AT3G05500 species:3702 "Arabidopsis thaliana"
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0005773 "vacuole"
            evidence=IDA] [GO:0006865 "amino acid transport" evidence=RCA]
            [GO:0010200 "response to chitin" evidence=RCA] GO:GO:0005773
            EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC009606
            HOGENOM:HOG000029051 ProtClustDB:CLSN2681981 InterPro:IPR008802
            Pfam:PF05755 EMBL:AY052683 EMBL:AY063733 EMBL:AY085141
            IPI:IPI00536435 RefSeq:NP_187201.1 UniGene:At.25126 PaxDb:Q9MA63
            PRIDE:Q9MA63 EnsemblPlants:AT3G05500.1 GeneID:819715
            KEGG:ath:AT3G05500 TAIR:At3g05500 eggNOG:NOG288606
            InParanoid:Q9MA63 OMA:KAEQCAV PhylomeDB:Q9MA63
            Genevestigator:Q9MA63 GermOnline:AT3G05500 Uniprot:Q9MA63
        Length = 246

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 81/218 (37%), Positives = 118/218 (54%)

Query:     3 TERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQK 62
             T+ +K+ L++L F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K
Sbjct:    15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEK 74

Query:    63 FKGVPXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEA---- 118
             +  VP             +  + D   PP+ K+V++Q  S  + A   A+ L SE     
Sbjct:    75 YHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAG 134

Query:   119 --QTGGPRAAVHYAAAE--SKHLLVTN-------SVKAWYKLNHYALFHTMADMAVPTAA 167
               +T    A   Y+  E  +K L           +V AW KLN   LF  +A +AVPTAA
Sbjct:   135 VVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAA 194

Query:   168 QWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 205
               S+KYN  VV+  +KGY V  Y+PLVP + I+K F +
Sbjct:   195 FCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAE 232


>TAIR|locus:2043373 [details] [associations]
            symbol:AT2G47780 "AT2G47780" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009062 "fatty acid catabolic process"
            evidence=RCA] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC005309
            HOGENOM:HOG000029051 ProtClustDB:CLSN2681981 InterPro:IPR008802
            Pfam:PF05755 EMBL:BT000468 EMBL:BT002146 IPI:IPI00541771 PIR:D84919
            RefSeq:NP_182299.1 UniGene:At.48607 UniGene:At.70188
            EnsemblPlants:AT2G47780.1 GeneID:819390 KEGG:ath:AT2G47780
            TAIR:At2g47780 eggNOG:NOG268959 InParanoid:O82246 OMA:VKQASSQ
            PhylomeDB:O82246 Genevestigator:O82246 GermOnline:AT2G47780
            Uniprot:O82246
        Length = 235

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 60/199 (30%), Positives = 100/199 (50%)

Query:     7 KQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGV 66
             + +L+HL F+++AA+    C S+LY+ AK N+GPL+  V  +E  V  V+ P+Y+KF  V
Sbjct:    38 EMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDV 97

Query:    67 PXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAA 126
             P            +     + + P L K+ +SQ  + + T  Q+   +V   ++      
Sbjct:    98 PFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALT-VATEVQRT-GVVDTTKSIARSVR 155

Query:   127 VHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYT 186
               Y  A +++   T     W  LN   LF  +A + +PTA  WS+KYN  V  +  + Y 
Sbjct:   156 DKYEPA-AEYYAAT----LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYF 210

Query:   187 VFGYLPLVPIDDIAKAFKQ 205
                YLP++PI+ I+   +Q
Sbjct:   211 GAEYLPMIPIEKISDILEQ 229


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.129   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      230       193   0.00098  110 3  11 22  0.45    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  157 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.16u 0.10s 17.26t   Elapsed:  00:00:01
  Total cpu time:  17.16u 0.10s 17.26t   Elapsed:  00:00:01
  Start:  Mon May 20 18:55:08 2013   End:  Mon May 20 18:55:09 2013

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