BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026954
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FYF7|Y1736_ARATH REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana
GN=At1g67360 PE=2 SV=1
Length = 240
Score = 268 bits (686), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/240 (57%), Positives = 171/240 (71%), Gaps = 10/240 (4%)
Query: 1 METERKKQE---LRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVG 57
METE+K + L+HL F+RIA I L VS+LY+YAK+NSGPL+S V VE AVT VV
Sbjct: 1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVT 60
Query: 58 PVYQKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSE 117
PVYQKFK VPD LLVFLD KV E S KFDEHAPP+AK+V +Q H LI A++KAQ+ V E
Sbjct: 61 PVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKE 120
Query: 118 AQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLV 177
A+TGGP+AA +YAA E K +VTNSVK W KLN Y H M D A+P AA +S +YN LV
Sbjct: 121 ARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLV 180
Query: 178 VEMTKKGYTVFGYLPLVPIDDIAKAFKQSEAPKKEDA------PEKEDAKEKD-SSSDSD 230
+MT GY++ GYLPLVP+DDI KA+++ +A +K+ E DA + D SSSDS+
Sbjct: 181 TDMTNMGYSLVGYLPLVPVDDIVKAYEKEDARRKKGGDTAGKKGETTDAADGDKSSSDSE 240
>sp|Q9SW70|SRP_VITRI Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1
Length = 248
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 128/218 (58%), Gaps = 15/218 (6%)
Query: 6 KKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKG 65
+++ L++L F+++AAI +VC SSLY+YAK NSGPL+ V TVE V V+GPVY+KF
Sbjct: 16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYD 75
Query: 66 VPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRA 125
VP +LL+F+D+KV+ + + + H P L KR + Q ++ + A + A + SE Q G
Sbjct: 76 VPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVD 135
Query: 126 AVH------YAAAE-------SKHLLVTN--SVKAWYKLNHYALFHTMADMAVPTAAQWS 170
Y+ E SK+ V +V AW LN LF +A + VPTAA WS
Sbjct: 136 TAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWS 195
Query: 171 KKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQSEA 208
+KYN V ++GYTV YLPL+P + IAK F+ A
Sbjct: 196 EKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQDGSA 233
>sp|Q9MA63|Y3550_ARATH REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana
GN=At3g05500 PE=2 SV=1
Length = 246
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 133/226 (58%), Gaps = 25/226 (11%)
Query: 3 TERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQK 62
T+ +K+ L++L F++ AA++AL+ + +Y AK SGPL+ V +VE AV VVGPVY+K
Sbjct: 15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEK 74
Query: 63 FKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRV------------------ASQVH--S 102
+ VP ++L ++D+KVD + + D PP+ K+V AS+V
Sbjct: 75 YHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAG 134
Query: 103 LIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMA 162
++ETAS A+++ S+ + P A YA E K +V AW KLN LF +A +A
Sbjct: 135 VVETASGMAKSVYSKYE---PAAKELYANYEPKA--EQCAVSAWKKLNQLPLFPRLAQVA 189
Query: 163 VPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQSEA 208
VPTAA S+KYN VV+ +KGY V Y+PLVP + I+K F + +A
Sbjct: 190 VPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKA 235
>sp|O82246|Y2778_ARATH REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana
GN=At2g47780 PE=2 SV=1
Length = 235
Score = 120 bits (301), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 111/208 (53%), Gaps = 19/208 (9%)
Query: 7 KQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGV 66
+ +L+HL F+++AA+ C S+LY+ AK N+GPL+ V +E V V+ P+Y+KF V
Sbjct: 38 EMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDV 97
Query: 67 PDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQK------AQNLVSEAQT 120
P LL+F+D+KVD+ + + P L K+ +SQ + + T Q+ +++ +
Sbjct: 98 PFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALT-VATEVQRTGVVDTTKSIARSVRD 156
Query: 121 GGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEM 180
AA +YAA W LN LF +A + +PTA WS+KYN V +
Sbjct: 157 KYEPAAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYV 204
Query: 181 TKKGYTVFGYLPLVPIDDIAKAFKQSEA 208
+ Y YLP++PI+ I+ +Q +
Sbjct: 205 GDRDYFGAEYLPMIPIEKISDILEQDQC 232
>sp|O82803|SRPP_HEVBR Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1
SV=1
Length = 204
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 114/205 (55%), Gaps = 8/205 (3%)
Query: 1 METERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVY 60
M E +++ L++L F+R A + A+ S+LY YAK SGPL+ V T+E+ V VV PVY
Sbjct: 1 MAEEVEEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVY 60
Query: 61 QKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQT 120
+P + + F+DK VD + D PP+ K+V++Q +S+ + A + ++ S
Sbjct: 61 Y----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFN 116
Query: 121 GGPR--AAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVV 178
G + A YA E K +V W LN L +A++ VPTA +S+KYN +V
Sbjct: 117 TGVQEGAKALYANLEPKAE--QYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVR 174
Query: 179 EMTKKGYTVFGYLPLVPIDDIAKAF 203
T++GY V YLPL+P + I K F
Sbjct: 175 GTTEQGYRVSSYLPLLPTEKITKVF 199
>sp|Q41112|SRP_PHAVU Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1
Length = 167
Score = 117 bits (294), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 95/174 (54%), Gaps = 15/174 (8%)
Query: 30 LYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDDLLVFLDKKVDEASRKFDEHA 89
LY YAK +GPL+ V TVE AV VV PVY +F VP +LL + D+KV E D H
Sbjct: 6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHV 61
Query: 90 PPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKL 149
P K+V+SQ A+++VSE + G ++ + +V AW KL
Sbjct: 62 PSNVKKVSSQ-----------ARSVVSEVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKL 110
Query: 150 NHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 203
N LF +A+ +P AA ++KYN ++V +KGY V YLPLVP + IAK F
Sbjct: 111 NQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVF 164
>sp|Q9FRA7|Y5513_ORYSJ REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa
subsp. japonica GN=Os05g0151300 PE=2 SV=2
Length = 253
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 115/203 (56%), Gaps = 14/203 (6%)
Query: 10 LRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDD 69
LR+L F++ AA Q LV ++ Y YAK+ +GPLR V VE V AVVGPVY +F GVP D
Sbjct: 35 LRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLD 94
Query: 70 LLVFLDKKVDEASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQNLVSEAQT 120
LL FLD+KV E+ ++ D PP LA+ A++V L+ TA+ A++ ++ A+
Sbjct: 95 LLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE- 153
Query: 121 GGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEM 180
PRA Y E + + +AW LN L ++ +P AA S +YN V +
Sbjct: 154 --PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADG 209
Query: 181 TKKGYTVFGYLPLVPIDDIAKAF 203
K+G V YLPLVP + +++ F
Sbjct: 210 AKRGSAVATYLPLVPTERLSRVF 232
>sp|A2Y0H2|Y5513_ORYSI REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica
GN=OsI_017815 PE=2 SV=1
Length = 253
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 115/203 (56%), Gaps = 14/203 (6%)
Query: 10 LRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDD 69
LR+L F++ AA Q LV ++ Y YAK+ +GPLR V VE V AVVGPVY +F GVP D
Sbjct: 35 LRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLD 94
Query: 70 LLVFLDKKVDEASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQNLVSEAQT 120
LL FLD+KV E+ ++ D PP LA+ A++V L+ TA+ A++ ++ A+
Sbjct: 95 LLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE- 153
Query: 121 GGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEM 180
PRA Y E + + +AW LN L ++ +P AA S +YN V +
Sbjct: 154 --PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADG 209
Query: 181 TKKGYTVFGYLPLVPIDDIAKAF 203
K+G V YLPLVP + +++ F
Sbjct: 210 AKRGSAVATYLPLVPTERLSRVF 232
>sp|P15252|REF_HEVBR Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2
Length = 138
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 63/113 (55%)
Query: 4 ERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKF 63
+ + + L++LGF++ AA A+ S++Y +AK SGPL+ V +E V V P+Y +F
Sbjct: 9 QGQGEGLKYLGFVQDAATYAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPLYNRF 68
Query: 64 KGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVS 116
+P+ L F+D V + D PP+ K + QV S I A + A++L S
Sbjct: 69 SYIPNGALKFVDSTVVASVTIIDRSLPPIVKDASIQVVSAIRAAPEAARSLAS 121
>sp|Q9SKB3|PARG1_ARATH Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1
PE=1 SV=2
Length = 548
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 73 FLDKKVDE--ASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTG 121
D+ +DE + R FDE P LA + Q SL+E Q A N+VS +TG
Sbjct: 78 LFDELIDEKESKRWFDEIIPALASLLL-QFPSLLEVHFQNADNIVSGIKTG 127
>sp|Q9YCY3|SYM_AERPE Methionine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=metG PE=3
SV=1
Length = 572
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 56 VGPVYQKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAK 94
V P++QK +PDD L +D+ V++A R+ E PPL +
Sbjct: 536 VEPLFQK---LPDDFLERVDEIVEDARRRAREKRPPLLR 571
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,209,218
Number of Sequences: 539616
Number of extensions: 3087531
Number of successful extensions: 10302
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 10263
Number of HSP's gapped (non-prelim): 44
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)