Query 026954
Match_columns 230
No_of_seqs 59 out of 61
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 02:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05755 REF: Rubber elongatio 100.0 9E-100 2E-104 662.6 17.7 204 3-206 3-215 (216)
2 PF03036 Perilipin: Perilipin 80.0 0.56 1.2E-05 44.6 0.0 92 9-105 8-111 (391)
3 PF12146 Hydrolase_4: Putative 50.4 17 0.00037 26.9 2.7 24 167-190 26-49 (79)
4 COG3136 GlpM Uncharacterized m 23.8 51 0.0011 27.3 1.7 22 178-199 18-40 (111)
5 PF03618 Kinase-PPPase: Kinase 23.5 44 0.00095 30.8 1.4 21 178-199 155-175 (255)
6 PRK05339 PEP synthetase regula 22.0 48 0.001 30.8 1.3 21 178-199 161-181 (269)
7 PF10691 DUF2497: Protein of u 19.7 98 0.0021 23.6 2.4 39 39-98 26-64 (73)
8 PF07431 DUF1512: Protein of u 19.4 6.2E+02 0.013 24.8 8.2 42 144-187 140-181 (355)
9 PF09096 Phage-tail_2: Basepla 17.8 22 0.00047 31.2 -1.7 28 60-87 111-146 (168)
10 PF12932 Sec16: Vesicle coat t 17.5 66 0.0014 25.5 1.1 20 64-83 67-86 (118)
No 1
>PF05755 REF: Rubber elongation factor protein (REF); InterPro: IPR008802 This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences. REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown [].
Probab=100.00 E-value=9e-100 Score=662.59 Aligned_cols=204 Identities=52% Similarity=0.828 Sum_probs=201.0
Q ss_pred chhhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccccccccccccccCchhhhHHhhcccchhhh
Q 026954 3 TERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDDLLVFLDKKVDEAS 82 (230)
Q Consensus 3 ~~~~e~~LKyL~FVq~Aai~a~v~~s~lY~yAKenSGPLkpgV~tVE~tVktVVgPVY~Kf~~vP~elL~fvDrKVDesv 82 (230)
.+.+|++||||||||+|+||+++|||+||+|||+|||||||||+||||||||||||||+||||+|+|+|+|+|||||+++
T Consensus 3 ~~~~e~~LKyL~FVq~Aai~a~~~~s~lY~yAK~~sGPLkpgV~tVE~tVktVv~PVy~Kf~~vP~~vL~fvDrKVD~~~ 82 (216)
T PF05755_consen 3 QEEEEKRLKYLGFVQAAAIQALVCFSNLYEYAKENSGPLKPGVDTVEGTVKTVVGPVYDKFHDVPFEVLKFVDRKVDESV 82 (216)
T ss_pred cccchhccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHhhHhhhcchHHHHhccCcHHHHHHHhhhHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCchhhhhhHHHHHHHHHhhHHHHHHHHHHhhCChhhhHH---------HHHHhhhhHHHHHHHHHHHHhhcCc
Q 026954 83 RKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVH---------YAAAESKHLLVTNSVKAWYKLNHYA 153 (230)
Q Consensus 83 ~~lD~~vPp~vKq~s~qa~~~a~~Ap~~A~~vvse~~~~Gv~~aa~---------~~A~kyep~ae~~av~aW~kLn~lP 153 (230)
++||+|+||++||+++||++++|+|||+||++++|+|++|+++||+ ++|++|||+||+|++++|++|||||
T Consensus 83 ~~~d~~vPp~vKqvs~Qa~~~~~~ape~ar~vvsevq~~Gv~~aa~~~A~~v~~k~ly~~yEp~Ae~~av~aW~~Ln~lP 162 (216)
T PF05755_consen 83 TKLDRHVPPVVKQVSSQAYSAAQKAPEKAREVVSEVQRAGVVEAAKGIAKTVYAKDLYTKYEPVAEQYAVSAWRKLNQLP 162 (216)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999 8889999999999999999999999
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHhhcCceeeecccccchHHHHHHhccc
Q 026954 154 LFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQS 206 (230)
Q Consensus 154 lfpqva~~~vPtAa~~seKYN~~V~~~a~kgy~v~~YLPlVP~ekIak~f~~~ 206 (230)
+||||+++++|||+|||||||++|.+|++|||++++||||||||||+|+|+++
T Consensus 163 ~~p~va~~avPtAa~~seKYN~~V~~~a~kgy~~a~ylPlvP~e~I~k~f~~~ 215 (216)
T PF05755_consen 163 LFPQVAQVAVPTAAYWSEKYNHAVKDMAEKGYRVAGYLPLVPIEKIAKAFKQE 215 (216)
T ss_pred CchhHHHhccchHHHHHHHHHHHHHHHHcCCCceeeecCcCcHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999875
No 2
>PF03036 Perilipin: Perilipin family; InterPro: IPR004279 The perilipin family includes lipid droplet-associated protein (perilipin) and adipose differentiation-related protein (adipophilin). Perilipin is a modulator of adipocyte lipid metabolism and adipophilinis involved in the development and maintenance of adipose tissue. Other proteins belong to this group include TIP47, a cargo selection device for mannose 6-phosphate receptor trafficking [].; PDB: 1SZI_A.
Probab=79.98 E-value=0.56 Score=44.63 Aligned_cols=92 Identities=24% Similarity=0.259 Sum_probs=0.0
Q ss_pred cccchhHH-HHHHHH----HHHHHHHHHHHhhhcCCCCCCccccccccccc-------ccccccccccCchhhhHHhhcc
Q 026954 9 ELRHLGFM-RIAAIQ----ALVCVSSLYDYAKRNSGPLRSPVGTVESAVTA-------VVGPVYQKFKGVPDDLLVFLDK 76 (230)
Q Consensus 9 ~LKyL~FV-q~Aai~----a~v~~s~lY~yAKenSGPLkpgV~tVE~tVkt-------VVgPVY~Kf~~vP~elL~fvDr 76 (230)
.+-++.|| |++.+= ++-.++++|...|++..=++...++.|..|++ ...|+++||.. -+.++|.
T Consensus 8 ~~~~~~~v~Rv~~lP~V~s~~~~~~~~Y~~~K~~~~~~~~~~~~aE~~v~~~~~~a~~~a~Pi~~~le~----~i~~~d~ 83 (391)
T PF03036_consen 8 SPPQQNVVSRVASLPLVSSACDKVSSAYSSTKDSHPLVKSVCETAEKGVKTATAAAVSSAQPILQKLEP----QIAAADE 83 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccchHHHHHHHccchHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcc----HHHHHHH
Confidence 34455565 344332 34678999999999999999999999999943 45799998874 3788898
Q ss_pred cchhhhhhccccCCchhhhhhHHHHHHHH
Q 026954 77 KVDEASRKFDEHAPPLAKRVASQVHSLIE 105 (230)
Q Consensus 77 KVDesv~~lD~~vPp~vKq~s~qa~~~a~ 105 (230)
-.-..+++|++.+|- +|+-..|.+.-++
T Consensus 84 ~ackgLD~lE~k~P~-l~~p~~~i~~~~k 111 (391)
T PF03036_consen 84 YACKGLDKLEEKLPI-LKQPPEQIVSDTK 111 (391)
T ss_dssp -----------------------------
T ss_pred HHHhhHHHHHHhCcc-ccCChhhHhhhhH
Confidence 888899999999996 5776666554333
No 3
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=50.42 E-value=17 Score=26.93 Aligned_cols=24 Identities=38% Similarity=0.789 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhcCceeeec
Q 026954 167 AQWSKKYNHLVVEMTKKGYTVFGY 190 (230)
Q Consensus 167 a~~seKYN~~V~~~a~kgy~v~~Y 190 (230)
.--+.+|-++...|++.||.|.+|
T Consensus 26 ~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 26 GEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEE
Confidence 345679999999999999999975
No 4
>COG3136 GlpM Uncharacterized membrane protein required for alginate biosynthesis [General function prediction only]
Probab=23.83 E-value=51 Score=27.26 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=17.7
Q ss_pred HHHhh-cCceeeecccccchHHH
Q 026954 178 VEMTK-KGYTVFGYLPLVPIDDI 199 (230)
Q Consensus 178 ~~~a~-kgy~v~~YLPlVP~ekI 199 (230)
.-+++ |||-++|-+||.||=-.
T Consensus 18 ~~lSktr~yyiaGliPLfPTFAl 40 (111)
T COG3136 18 ALLSKTRNYYIAGLIPLFPTFAL 40 (111)
T ss_pred HHHHhcccceecccccccchHHH
Confidence 33455 99999999999999654
No 5
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=23.52 E-value=44 Score=30.76 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=16.5
Q ss_pred HHHhhcCceeeecccccchHHH
Q 026954 178 VEMTKKGYTVFGYLPLVPIDDI 199 (230)
Q Consensus 178 ~~~a~kgy~v~~YLPlVP~ekI 199 (230)
.+||.+||+++. +||||=-.+
T Consensus 155 ~YLA~~G~KvAN-~PLvpe~~l 175 (255)
T PF03618_consen 155 MYLANKGYKVAN-VPLVPEVPL 175 (255)
T ss_pred HHHHhcCcceee-cCcCCCCCC
Confidence 368889999997 699986444
No 6
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=21.97 E-value=48 Score=30.78 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=16.6
Q ss_pred HHHhhcCceeeecccccchHHH
Q 026954 178 VEMTKKGYTVFGYLPLVPIDDI 199 (230)
Q Consensus 178 ~~~a~kgy~v~~YLPlVP~ekI 199 (230)
.+||.+||+++. +||||=-.+
T Consensus 161 ~YLA~~G~KvAN-~PLvpe~~l 181 (269)
T PRK05339 161 LYLANKGIKAAN-YPLVPEVPL 181 (269)
T ss_pred HHHHccCCceEe-eCCCCCCCC
Confidence 368889999998 599986444
No 7
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=19.70 E-value=98 Score=23.55 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=30.4
Q ss_pred CCCCCcccccccccccccccccccccCchhhhHHhhcccchhhhhhccccCCchhhhhhH
Q 026954 39 GPLRSPVGTVESAVTAVVGPVYQKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVAS 98 (230)
Q Consensus 39 GPLkpgV~tVE~tVktVVgPVY~Kf~~vP~elL~fvDrKVDesv~~lD~~vPp~vKq~s~ 98 (230)
.+...|-.|+|+.|+.+.-|.. -.=||.|+|.+|+....
T Consensus 26 ~~~~~~~~TlE~lvremLRPmL---------------------keWLD~nLP~lVErlVr 64 (73)
T PF10691_consen 26 QISPSSGRTLEDLVREMLRPML---------------------KEWLDENLPGLVERLVR 64 (73)
T ss_pred hccccccccHHHHHHHHHHHHH---------------------HHHHHhccHHHHHHHHH
Confidence 4556678899999999998874 24578899999988655
No 8
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=19.40 E-value=6.2e+02 Score=24.80 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=32.2
Q ss_pred HHHHHhhcCchhhhhhhhhcchhHHHHHHHHHHHHHHhhcCcee
Q 026954 144 KAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTV 187 (230)
Q Consensus 144 ~aW~kLn~lPlfpqva~~~vPtAa~~seKYN~~V~~~a~kgy~v 187 (230)
..=+|.|.++|+-|+ +|.+|----..|-||.++.... +|-++
T Consensus 140 ~lakK~~n~~Li~qL-qm~lP~i~e~aea~~~A~~aF~-~G~PI 181 (355)
T PF07431_consen 140 LLAKKTNNWYLIMQL-QMLLPLIMEQAEAYNEAVDAFS-KGQPI 181 (355)
T ss_pred HHHHHhccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh-cCCCC
Confidence 344677778887775 7889999999999999998554 55554
No 9
>PF09096 Phage-tail_2: Baseplate structural protein, domain 2; InterPro: IPR015180 This domain adopts a beta barrel structure with a Greek key topology, which is topologically similar to the FMN-binding split barrel. It is found at the C terminus of the Gp27 protein; a structural component of the viral baseplate []. ; PDB: 1WTH_D 2Z6B_D 1K28_D.
Probab=17.84 E-value=22 Score=31.19 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=19.5
Q ss_pred cccccCchhhhHHhhccc--------chhhhhhccc
Q 026954 60 YQKFKGVPDDLLVFLDKK--------VDEASRKFDE 87 (230)
Q Consensus 60 Y~Kf~~vP~elL~fvDrK--------VDesv~~lD~ 87 (230)
|.-|.-.|-..+.|-|.| |||.++++.+
T Consensus 111 ~GnF~l~PG~ki~F~D~KnQf~~dfyVDEVIHEiSn 146 (168)
T PF09096_consen 111 YGNFELTPGMKINFYDPKNQFKTDFYVDEVIHEISN 146 (168)
T ss_dssp E--TT--TT-EEEEE-SS----SEEEEEEEEEEEES
T ss_pred EccccccCCcEEEecChhhhhccceehhhhhhhhcc
Confidence 457889999999999998 9999998865
No 10
>PF12932 Sec16: Vesicle coat trafficking protein Sec16 mid-region; InterPro: IPR024340 The yeast protein Sec16 plays a key role in the formation of coat protein II vesicles, which mediate protein transport from the endoplasmic reticulum (ER) to the Golgi apparatus []. Mammals have two isoforms of this protein - Sec16A and Sec16B. Sec16A appears to be the primary orthologue as it has the highest sequence similarity to the yeast sequence. Sec16B is involved in export of the peroxisomal membrane biogenesis factor peroxin 16 []. This entry represents the central conserved domain (CCD) of Sec16, found in all isoforms of this protein. The CCD is necessary for targeting of the protein to the ER [].; PDB: 3MZK_C.
Probab=17.52 E-value=66 Score=25.48 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=13.9
Q ss_pred cCchhhhHHhhcccchhhhh
Q 026954 64 KGVPDDLLVFLDKKVDEASR 83 (230)
Q Consensus 64 ~~vP~elL~fvDrKVDesv~ 83 (230)
+..-.+|++|+|.++++.-.
T Consensus 67 ktkKkdV~kwl~~~i~~~~~ 86 (118)
T PF12932_consen 67 KTKKKDVIKWLEEKIEELER 86 (118)
T ss_dssp T--HHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHhhc
Confidence 56678999999999876643
Done!