Query 026954
Match_columns 230
No_of_seqs 59 out of 61
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 03:58:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ggd_C Mitotic checkpoint seri 29.8 11 0.00038 22.8 0.0 14 31-44 3-16 (26)
2 1gxg_A Colicin E8 immunity pro 21.9 33 0.0011 25.7 1.3 16 141-156 68-83 (85)
3 3b6i_A Flavoprotein WRBA; flav 21.1 24 0.00083 27.2 0.5 24 52-77 71-94 (198)
4 2yum_A ZZZ3 protein, zinc fing 20.4 50 0.0017 22.8 2.0 28 165-192 47-74 (75)
5 1t5b_A Acyl carrier protein ph 18.3 38 0.0013 26.0 1.0 24 53-78 90-113 (201)
6 3s64_A AC-SLP-1, saposin-like 17.2 42 0.0014 25.2 1.0 29 64-92 47-78 (87)
7 2ark_A Flavodoxin; FMN, struct 16.8 39 0.0013 26.3 0.8 24 52-77 55-78 (188)
8 3u43_A Colicin-E2 immunity pro 15.6 55 0.0019 25.0 1.3 17 140-156 68-84 (94)
9 1rli_A Trp repressor binding p 15.3 49 0.0017 25.1 1.0 23 53-77 75-97 (184)
10 3gfs_A FMN-dependent NADPH-azo 15.2 50 0.0017 25.3 1.0 22 54-77 68-89 (174)
No 1
>4ggd_C Mitotic checkpoint serine/threonine-protein kinas beta; cell cycle, mitosis, securin, ubiquitination, WD40; 2.44A {Homo sapiens}
Probab=29.78 E-value=11 Score=22.83 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=12.0
Q ss_pred HHHhhhcCCCCCCc
Q 026954 31 YDYAKRNSGPLRSP 44 (230)
Q Consensus 31 Y~yAKenSGPLkpg 44 (230)
++..|||--|||.|
T Consensus 3 wel~kenvqplrqg 16 (26)
T 4ggd_C 3 WELSKENVQPLRQG 16 (26)
T ss_pred cccchhccchhhcc
Confidence 46789999999987
No 2
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=21.85 E-value=33 Score=25.68 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.9
Q ss_pred HHHHHHHHhhcCchhh
Q 026954 141 NSVKAWYKLNHYALFH 156 (230)
Q Consensus 141 ~av~aW~kLn~lPlfp 156 (230)
..++.||.-|.+|.|-
T Consensus 68 ~~ik~wRa~~g~p~Fk 83 (85)
T 1gxg_A 68 KEIKEWRAANGKSGFK 83 (85)
T ss_dssp HHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHcCCcccC
Confidence 4689999999999983
No 3
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=21.13 E-value=24 Score=27.15 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.5
Q ss_pred cccccccccccccCchhhhHHhhccc
Q 026954 52 VTAVVGPVYQKFKGVPDDLLVFLDKK 77 (230)
Q Consensus 52 VktVVgPVY~Kf~~vP~elL~fvDrK 77 (230)
.--+++|+| +.++|..+..|+|+-
T Consensus 71 ~ii~gsP~y--~~~~~~~lk~~ld~~ 94 (198)
T 3b6i_A 71 AIIFGTPTR--FGNMSGQMRTFLDQT 94 (198)
T ss_dssp EEEEEEEEE--TTEECHHHHHHHTTC
T ss_pred EEEEEeChh--cCCchHHHHHHHHHh
Confidence 345789999 789999999999985
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.39 E-value=50 Score=22.82 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHhhcCceeeeccc
Q 026954 165 TAAQWSKKYNHLVVEMTKKGYTVFGYLP 192 (230)
Q Consensus 165 tAa~~seKYN~~V~~~a~kgy~v~~YLP 192 (230)
|.-.|.++|+.....+..+|..+-++.|
T Consensus 47 t~~qcr~r~~~~l~~~~k~g~~~pg~~~ 74 (75)
T 2yum_A 47 TAKQVASQVQKYFIKLTKAGIPVSGPSS 74 (75)
T ss_dssp CHHHHHHHHHHHHGGGSTTCSCCCCSCC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 7889999998888889999999888876
No 5
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=18.30 E-value=38 Score=26.02 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.1
Q ss_pred ccccccccccccCchhhhHHhhcccc
Q 026954 53 TAVVGPVYQKFKGVPDDLLVFLDKKV 78 (230)
Q Consensus 53 ktVVgPVY~Kf~~vP~elL~fvDrKV 78 (230)
--+++|+| +.++|-.+..|+||-.
T Consensus 90 iv~~~P~y--~~~~p~~lK~~iD~~~ 113 (201)
T 1t5b_A 90 IVIAAPMY--NFNIPTQLKNYFDLIA 113 (201)
T ss_dssp EEEECCCB--TTBCCHHHHHHHHHHC
T ss_pred EEEEeCcc--cCcCCHHHHHHHHHhe
Confidence 45789999 5699999999999853
No 6
>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding protein; HET: CIT EPE; 2.30A {Ancylostoma caninum}
Probab=17.21 E-value=42 Score=25.22 Aligned_cols=29 Identities=7% Similarity=0.157 Sum_probs=24.1
Q ss_pred cCch---hhhHHhhcccchhhhhhccccCCch
Q 026954 64 KGVP---DDLLVFLDKKVDEASRKFDEHAPPL 92 (230)
Q Consensus 64 ~~vP---~elL~fvDrKVDesv~~lD~~vPp~ 92 (230)
+++| -+=.+|+|..+|-.+.+|.++.+|-
T Consensus 47 ~~ip~a~k~C~~~v~~~~d~II~eLe~g~~P~ 78 (87)
T 3s64_A 47 GWLPYAEKECKALAKIEMGAIKTLLENGSAPE 78 (87)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred ccCCchHHHHHHHHHHhHHHHHHHHHcCCCHH
Confidence 5666 6678899999999999999998884
No 7
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=16.81 E-value=39 Score=26.34 Aligned_cols=24 Identities=25% Similarity=0.154 Sum_probs=20.2
Q ss_pred cccccccccccccCchhhhHHhhccc
Q 026954 52 VTAVVGPVYQKFKGVPDDLLVFLDKK 77 (230)
Q Consensus 52 VktVVgPVY~Kf~~vP~elL~fvDrK 77 (230)
.--+++|+| +.++|..+..|+|+-
T Consensus 55 ~ii~gsP~y--~g~~~~~lk~fld~~ 78 (188)
T 2ark_A 55 GLAVGSPTN--MGLVSWKMKRFFDDV 78 (188)
T ss_dssp EEEEEEECB--TTBCCHHHHHHHHHT
T ss_pred EEEEEeCcc--CCcCCHHHHHHHHHH
Confidence 345788999 789999999999984
No 8
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=15.56 E-value=55 Score=25.03 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhcCchhh
Q 026954 140 TNSVKAWYKLNHYALFH 156 (230)
Q Consensus 140 ~~av~aW~kLn~lPlfp 156 (230)
-..|+.||.-|.+|.|-
T Consensus 68 v~~IKeWRa~nG~pgFK 84 (94)
T 3u43_A 68 VKEIKEWRAANGKSGFK 84 (94)
T ss_dssp HHHHHHHHHHTTCCCCB
T ss_pred HHHHHHHHHHcCCccch
Confidence 35689999999999984
No 9
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=15.29 E-value=49 Score=25.06 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=19.6
Q ss_pred ccccccccccccCchhhhHHhhccc
Q 026954 53 TAVVGPVYQKFKGVPDDLLVFLDKK 77 (230)
Q Consensus 53 ktVVgPVY~Kf~~vP~elL~fvDrK 77 (230)
--+++|+| +.++|-.+..|+||-
T Consensus 75 ii~~~P~y--~~~~p~~lK~~iD~~ 97 (184)
T 1rli_A 75 LIFATPIY--WFGMSGTLKLFIDRW 97 (184)
T ss_dssp EEEEEECB--TTBCCHHHHHHHHTH
T ss_pred EEEEeCcc--ccCCcHHHHHHHHHh
Confidence 45789999 578999999999993
No 10
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=15.16 E-value=50 Score=25.30 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.1
Q ss_pred cccccccccccCchhhhHHhhccc
Q 026954 54 AVVGPVYQKFKGVPDDLLVFLDKK 77 (230)
Q Consensus 54 tVVgPVY~Kf~~vP~elL~fvDrK 77 (230)
-+++|+| +.++|..+..|+|+=
T Consensus 68 i~~tP~y--~~~~p~~lk~~lD~l 89 (174)
T 3gfs_A 68 VLLSPEY--HSGMSGALKNALDFL 89 (174)
T ss_dssp EEEEECS--SSSCCHHHHHHHHTC
T ss_pred EEEcCCc--CCCCCHHHHHHHHHh
Confidence 4679999 689999999999963
Done!