Query 026954
Match_columns 230
No_of_seqs 59 out of 61
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 03:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026954.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026954hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ik7a_ a.77.1.2 (A:) Pelle de 39.8 6.9 0.0005 25.8 1.9 14 168-181 12-25 (52)
2 d1k28d2 b.106.1.1 (D:201-376) 28.5 3.4 0.00025 33.0 -1.3 29 59-87 112-148 (176)
3 d1rlia_ c.23.5.6 (A:) Hypothet 21.1 14 0.001 26.2 1.0 36 39-76 52-92 (179)
4 d2vlqa1 a.28.2.1 (A:4-84) ImmE 19.3 19 0.0014 25.4 1.3 16 140-155 65-80 (81)
5 d1ayia_ a.28.2.1 (A:) ImmE7 pr 18.7 19 0.0014 25.5 1.3 21 136-156 65-85 (86)
6 d1gxha_ a.28.2.1 (A:) ImmE8 (I 18.4 20 0.0015 25.4 1.3 17 140-156 67-83 (85)
7 d1tqha_ c.69.1.29 (A:) Carboxy 13.3 52 0.0038 21.7 2.4 19 171-189 25-43 (242)
8 d2ccaa1 a.93.1.3 (A:26-435) Ca 12.9 46 0.0033 29.2 2.4 16 181-197 393-409 (410)
9 d1rmda1 g.37.1.1 (A:87-116) V( 12.5 37 0.0027 19.9 1.1 11 170-180 16-26 (30)
10 d1thta_ c.69.1.13 (A:) Myristo 12.5 39 0.0028 26.2 1.6 21 170-190 45-65 (302)
No 1
>d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=39.77 E-value=6.9 Score=25.80 Aligned_cols=14 Identities=36% Similarity=0.757 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHh
Q 026954 168 QWSKKYNHLVVEMT 181 (230)
Q Consensus 168 ~~seKYN~~V~~~a 181 (230)
-|.++|||+|..+-
T Consensus 12 ~Wg~q~NHTi~eLF 25 (52)
T d1ik7a_ 12 IWGGQYNHTVQTLF 25 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhCCcccccHHHHH
Confidence 58999999998763
No 2
>d1k28d2 b.106.1.1 (D:201-376) Baseplate structural protein gp27 {Bacteriophage T4 [TaxId: 10665]}
Probab=28.54 E-value=3.4 Score=32.96 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=25.5
Q ss_pred ccccccCchhhhHHhhccc--------chhhhhhccc
Q 026954 59 VYQKFKGVPDDLLVFLDKK--------VDEASRKFDE 87 (230)
Q Consensus 59 VY~Kf~~vP~elL~fvDrK--------VDesv~~lD~ 87 (230)
.|.-|.-.|-..|.|.|.| |||.+++|.|
T Consensus 112 t~GnF~LtPg~ki~F~D~KnQf~~ef~VDEVIHEiS~ 148 (176)
T d1k28d2 112 TIGNFNLTPGVKIIFNDSKNQFKTEFYVDEVIHELSN 148 (176)
T ss_dssp ESCCTTCCTTCEECEECSSCCCCSCEEEEEEEEEEES
T ss_pred EeccccccCCcEEEEechhhhhccchhHHHHHHHHhc
Confidence 4678999999999999998 9999999765
No 3
>d1rlia_ c.23.5.6 (A:) Hypothetical protein YwqN {Bacillus subtilis [TaxId: 1423]}
Probab=21.05 E-value=14 Score=26.25 Aligned_cols=36 Identities=19% Similarity=0.544 Sum_probs=23.7
Q ss_pred CCCCCcccccccccc-----cccccccccccCchhhhHHhhcc
Q 026954 39 GPLRSPVGTVESAVT-----AVVGPVYQKFKGVPDDLLVFLDK 76 (230)
Q Consensus 39 GPLkpgV~tVE~tVk-----tVVgPVY~Kf~~vP~elL~fvDr 76 (230)
.+.+..++.+-..+. -+++|+| +.++|-.+-.|+||
T Consensus 52 ~~~~d~~~~~~~~l~~AD~ii~~sP~y--~~~~~a~lK~~iDr 92 (179)
T d1rlia_ 52 RPVQDDYDSIIERILQCHILIFATPIY--WFGMSGTLKLFIDR 92 (179)
T ss_dssp -----CHHHHHHHHHTCSEEEEEEECB--TTBCCHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHhCCeEEEeeccc--CCCccHHHHHHHHH
Confidence 445555555444443 3689999 68999999999998
No 4
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=19.29 E-value=19 Score=25.36 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhcCchh
Q 026954 140 TNSVKAWYKLNHYALF 155 (230)
Q Consensus 140 ~~av~aW~kLn~lPlf 155 (230)
-..++.||.-|.+|.|
T Consensus 65 v~~IK~WRa~nG~PgF 80 (81)
T d2vlqa1 65 VNTVKQWRAANGKSGF 80 (81)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCCC
Confidence 3578999999999988
No 5
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=18.74 E-value=19 Score=25.54 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHhhcCchhh
Q 026954 136 HLLVTNSVKAWYKLNHYALFH 156 (230)
Q Consensus 136 p~ae~~av~aW~kLn~lPlfp 156 (230)
|----..|+.||.-|.+|.|-
T Consensus 65 PegI~k~IKeWRa~nG~PgFK 85 (86)
T d1ayia_ 65 PEGIVKEIKEWRAANGKPGFK 85 (86)
T ss_dssp HHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCccC
Confidence 333345799999999999983
No 6
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=18.36 E-value=20 Score=25.36 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhcCchhh
Q 026954 140 TNSVKAWYKLNHYALFH 156 (230)
Q Consensus 140 ~~av~aW~kLn~lPlfp 156 (230)
-..|+.||+-|.+|.|-
T Consensus 67 v~~IKeWRa~nG~PgFK 83 (85)
T d1gxha_ 67 IKEIKEWRAANGKSGFK 83 (85)
T ss_dssp HHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHcCCcccc
Confidence 35789999999999984
No 7
>d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]}
Probab=13.29 E-value=52 Score=21.73 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhcCceeee
Q 026954 171 KKYNHLVVEMTKKGYTVFG 189 (230)
Q Consensus 171 eKYN~~V~~~a~kgy~v~~ 189 (230)
+-|+.....++++||+|..
T Consensus 25 ~~~~~l~~~L~~~G~~v~~ 43 (242)
T d1tqha_ 25 ADVRMLGRFLESKGYTCHA 43 (242)
T ss_dssp HHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 4477889999999999975
No 8
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.90 E-value=46 Score=29.24 Aligned_cols=16 Identities=50% Similarity=0.810 Sum_probs=11.0
Q ss_pred hhcCceeeecc-cccchH
Q 026954 181 TKKGYTVFGYL-PLVPID 197 (230)
Q Consensus 181 a~kgy~v~~YL-PlVP~e 197 (230)
.+.| +.+.|| |.||-|
T Consensus 393 rDmg-p~~r~~g~~~p~e 409 (410)
T d2ccaa1 393 RDMG-PVARYLGPLVPKQ 409 (410)
T ss_dssp TTSC-SGGGCBSTTCCSC
T ss_pred ccCC-chhhccCCCCCCC
Confidence 4555 677788 888865
No 9
>d1rmda1 g.37.1.1 (A:87-116) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.53 E-value=37 Score=19.87 Aligned_cols=11 Identities=45% Similarity=0.585 Sum_probs=8.5
Q ss_pred HHHHHHHHHHH
Q 026954 170 SKKYNHLVVEM 180 (230)
Q Consensus 170 seKYN~~V~~~ 180 (230)
-|||||-|.+-
T Consensus 16 leKYnhHvSsH 26 (30)
T d1rmda1 16 LEKYNHHVSSH 26 (30)
T ss_dssp HHHHHHHHHTS
T ss_pred hhhhcchhhcc
Confidence 48999988754
No 10
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]}
Probab=12.50 E-value=39 Score=26.19 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhcCceeeec
Q 026954 170 SKKYNHLVVEMTKKGYTVFGY 190 (230)
Q Consensus 170 seKYN~~V~~~a~kgy~v~~Y 190 (230)
++.|......++++||+|..|
T Consensus 45 ~~~~~~~a~~L~~~G~~Vi~~ 65 (302)
T d1thta_ 45 MDHFAGLAEYLSTNGFHVFRY 65 (302)
T ss_dssp GGGGHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEe
Confidence 467899999999999999876
Done!