BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026955
         (230 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1K0E|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
           From Formate Grown Crystals
 pdb|1K0E|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
           From Formate Grown Crystals
 pdb|1K0G|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
           From Phosphate Grown Crystals
 pdb|1K0G|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
           From Phosphate Grown Crystals
          Length = 453

 Score = 37.7 bits (86), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCS 168
           +  LP QL   D + A+F GG++     +  +E+ + + + Q+R  +C   GYL+   C 
Sbjct: 345 TAQLPEQLHASDLLRAAFPGGSITGAPKVRAMEIID-ELEPQRRNAWCGSIGYLSF--CG 401

Query: 169 NTGSLVLIEPVSTVNG 184
           N  + + I  ++ +NG
Sbjct: 402 NMDTSITIRTLTAING 417


>pdb|4H0P|A Chain A, Crystal Structure Of Acetate Kinase From Cryptococcus
           Neoformans
 pdb|4H0P|B Chain B, Crystal Structure Of Acetate Kinase From Cryptococcus
           Neoformans
          Length = 438

 Score = 26.9 bits (58), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 71  YATCFS-LIAGVILFGGLLAPSLEL-----KLGIGGTSYADFIQSV--HLPMQLSQVDPI 122
           + T F   IA  +    L  P  EL     K G  G SYA  +QS+  HL     Q++ +
Sbjct: 158 FDTIFHRTIAPEVYTYALPPPDTELTMPLRKYGFHGLSYASIVQSLAEHLKKPSDQINVV 217

Query: 123 VASFSGGA 130
           VA    G+
Sbjct: 218 VAHLGSGS 225


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,960,828
Number of Sequences: 62578
Number of extensions: 213221
Number of successful extensions: 514
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 8
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)