Query 026955
Match_columns 230
No_of_seqs 167 out of 1126
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 02:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.3 2.2E-12 4.7E-17 121.4 5.4 69 143-220 135-212 (371)
2 PLN03165 chaperone protein dna 99.2 1.2E-11 2.7E-16 99.0 2.4 73 138-220 28-101 (111)
3 PRK14282 chaperone protein Dna 99.1 5.1E-11 1.1E-15 111.3 4.4 97 109-228 127-233 (369)
4 PRK14298 chaperone protein Dna 99.1 7.7E-11 1.7E-15 110.7 4.2 78 144-228 135-222 (377)
5 TIGR02349 DnaJ_bact chaperone 99.0 1.2E-10 2.6E-15 107.9 4.0 89 109-220 118-215 (354)
6 PRK14276 chaperone protein Dna 99.0 1.4E-10 3E-15 108.9 4.2 69 144-219 140-217 (380)
7 PRK14278 chaperone protein Dna 99.0 1.4E-10 2.9E-15 109.0 4.0 78 144-228 133-220 (378)
8 PRK14296 chaperone protein Dna 99.0 1.7E-10 3.6E-15 108.2 4.6 69 144-219 143-220 (372)
9 PRK14280 chaperone protein Dna 99.0 1.9E-10 4.1E-15 107.9 4.3 70 144-220 137-215 (376)
10 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.0 2.1E-10 4.5E-15 83.2 3.6 56 153-215 1-66 (66)
11 PRK14277 chaperone protein Dna 99.0 1.8E-10 3.9E-15 108.3 4.1 96 110-228 131-236 (386)
12 PRK14286 chaperone protein Dna 99.0 1.8E-10 3.8E-15 108.0 3.6 74 144-228 144-227 (372)
13 PRK14279 chaperone protein Dna 99.0 2.1E-10 4.6E-15 108.2 4.0 74 144-228 167-250 (392)
14 PRK14281 chaperone protein Dna 99.0 2.3E-10 5E-15 108.1 4.0 97 109-228 138-243 (397)
15 PRK14297 chaperone protein Dna 99.0 4.3E-10 9.3E-15 105.5 4.8 69 144-219 142-219 (380)
16 PRK10767 chaperone protein Dna 99.0 4E-10 8.8E-15 105.2 4.3 93 109-228 117-219 (371)
17 PRK14301 chaperone protein Dna 99.0 4.2E-10 9.2E-15 105.5 3.8 93 109-228 119-221 (373)
18 PRK14293 chaperone protein Dna 99.0 3.6E-10 7.8E-15 105.8 3.3 96 110-228 119-224 (374)
19 PRK14284 chaperone protein Dna 98.9 4.3E-10 9.4E-15 105.9 3.6 74 144-228 152-235 (391)
20 PRK14288 chaperone protein Dna 98.9 5.8E-10 1.2E-14 104.5 4.3 85 109-220 115-207 (369)
21 PRK14300 chaperone protein Dna 98.9 5.2E-10 1.1E-14 104.8 3.9 85 109-220 120-213 (372)
22 PRK14287 chaperone protein Dna 98.9 6.4E-10 1.4E-14 104.2 4.5 69 144-219 132-209 (371)
23 PRK14295 chaperone protein Dna 98.9 5.7E-10 1.2E-14 105.2 4.1 73 144-227 160-242 (389)
24 PRK14285 chaperone protein Dna 98.9 6.6E-10 1.4E-14 103.9 4.0 74 144-228 140-223 (365)
25 PRK14289 chaperone protein Dna 98.9 6.4E-10 1.4E-14 104.4 3.9 89 109-220 129-226 (386)
26 PTZ00037 DnaJ_C chaperone prot 98.9 8.2E-10 1.8E-14 105.5 4.3 78 144-228 144-232 (421)
27 PRK14294 chaperone protein Dna 98.9 8.1E-10 1.7E-14 103.2 4.0 92 110-228 120-221 (366)
28 PRK14290 chaperone protein Dna 98.9 1.2E-09 2.7E-14 101.9 4.2 89 109-220 124-220 (365)
29 PRK14291 chaperone protein Dna 98.9 1.4E-09 3E-14 102.2 4.2 85 109-220 131-223 (382)
30 PRK14283 chaperone protein Dna 98.9 1.5E-09 3.2E-14 101.9 3.7 69 144-219 140-217 (378)
31 PRK14292 chaperone protein Dna 98.9 1.8E-09 3.8E-14 100.9 4.2 89 109-220 114-212 (371)
32 KOG2813 Predicted molecular ch 98.5 9.7E-08 2.1E-12 88.9 3.3 65 148-219 185-270 (406)
33 KOG0712 Molecular chaperone (D 98.4 1.3E-07 2.9E-12 88.3 3.6 70 144-219 121-200 (337)
34 COG1107 Archaea-specific RecJ- 98.3 5.4E-07 1.2E-11 89.3 3.7 70 151-220 3-83 (715)
35 KOG2813 Predicted molecular ch 98.1 1.1E-06 2.4E-11 81.9 2.0 24 2-25 14-42 (406)
36 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.8 1.8E-05 3.9E-10 57.3 3.0 39 164-218 1-54 (66)
37 COG1107 Archaea-specific RecJ- 97.7 2.9E-05 6.3E-10 77.3 3.7 44 150-211 18-86 (715)
38 COG0484 DnaJ DnaJ-class molecu 97.6 2.5E-05 5.4E-10 74.1 2.5 74 109-206 117-209 (371)
39 PRK14298 chaperone protein Dna 97.1 0.00032 7E-09 66.2 2.6 74 109-206 116-210 (377)
40 PRK14279 chaperone protein Dna 97.1 0.00037 8.1E-09 66.1 2.9 43 161-219 173-226 (392)
41 PLN03165 chaperone protein dna 97.0 0.00061 1.3E-08 54.9 3.1 47 150-206 52-98 (111)
42 PRK14285 chaperone protein Dna 97.0 0.00045 9.8E-09 64.9 2.6 74 109-206 121-211 (365)
43 PRK14280 chaperone protein Dna 96.9 0.00053 1.2E-08 64.6 2.8 74 109-206 118-212 (376)
44 PRK14286 chaperone protein Dna 96.9 0.00059 1.3E-08 64.3 2.9 74 109-206 125-215 (372)
45 PRK14300 chaperone protein Dna 96.9 0.00058 1.3E-08 64.3 2.9 38 150-206 162-210 (372)
46 PRK10767 chaperone protein Dna 96.9 0.00057 1.2E-08 64.1 2.8 38 150-206 159-207 (371)
47 PRK14296 chaperone protein Dna 96.9 0.00058 1.3E-08 64.4 2.8 74 109-206 124-218 (372)
48 PRK14278 chaperone protein Dna 96.9 0.00062 1.3E-08 64.3 2.9 74 109-206 114-208 (378)
49 PRK14284 chaperone protein Dna 96.9 0.00055 1.2E-08 64.8 2.5 74 109-206 133-223 (391)
50 PRK14301 chaperone protein Dna 96.8 0.00077 1.7E-08 63.6 2.6 42 162-219 145-197 (373)
51 PRK14282 chaperone protein Dna 96.8 0.00095 2.1E-08 62.7 3.0 42 162-219 153-209 (369)
52 TIGR02642 phage_xxxx uncharact 96.8 0.00093 2E-08 58.1 2.7 27 195-221 100-131 (186)
53 PRK14295 chaperone protein Dna 96.8 0.00099 2.1E-08 63.2 3.1 43 161-219 166-219 (389)
54 PRK14297 chaperone protein Dna 96.8 0.00089 1.9E-08 63.1 2.8 42 162-219 149-205 (380)
55 TIGR02349 DnaJ_bact chaperone 96.8 0.00092 2E-08 62.2 2.8 38 150-206 160-212 (354)
56 PRK14288 chaperone protein Dna 96.6 0.0012 2.6E-08 62.2 2.7 38 150-206 156-204 (369)
57 KOG2824 Glutaredoxin-related p 96.6 0.0019 4E-08 59.4 3.9 55 147-212 226-280 (281)
58 PTZ00037 DnaJ_C chaperone prot 96.6 0.0012 2.7E-08 63.4 2.7 76 109-206 125-220 (421)
59 PRK14289 chaperone protein Dna 96.6 0.0011 2.4E-08 62.6 2.3 38 150-206 171-223 (386)
60 PRK14287 chaperone protein Dna 96.6 0.0012 2.7E-08 62.1 2.3 42 162-219 139-195 (371)
61 PRK14290 chaperone protein Dna 96.6 0.0015 3.3E-08 61.3 2.8 38 150-206 165-217 (365)
62 PRK14277 chaperone protein Dna 96.5 0.0015 3.2E-08 61.8 2.7 38 150-206 172-224 (386)
63 PRK14294 chaperone protein Dna 96.5 0.0016 3.4E-08 61.2 2.7 38 150-206 161-209 (366)
64 PRK14281 chaperone protein Dna 96.5 0.0018 3.8E-08 61.6 2.7 38 150-206 179-231 (397)
65 PRK14291 chaperone protein Dna 96.5 0.0019 4E-08 61.1 2.8 37 150-206 173-220 (382)
66 PRK14293 chaperone protein Dna 96.4 0.002 4.4E-08 60.7 2.7 38 150-206 160-212 (374)
67 PRK14292 chaperone protein Dna 96.2 0.0029 6.3E-08 59.4 2.6 38 150-206 157-209 (371)
68 PRK14276 chaperone protein Dna 96.1 0.0046 1E-07 58.4 3.3 73 110-206 122-215 (380)
69 PRK14283 chaperone protein Dna 96.0 0.004 8.6E-08 58.8 2.6 74 109-206 121-215 (378)
70 cd03031 GRX_GRX_like Glutaredo 95.6 0.012 2.6E-07 49.2 3.3 50 149-208 98-147 (147)
71 TIGR02642 phage_xxxx uncharact 95.5 0.0079 1.7E-07 52.4 2.1 26 150-175 99-129 (186)
72 KOG0715 Molecular chaperone (D 94.5 0.014 3E-07 53.7 0.7 66 144-220 158-232 (288)
73 PRK03564 formate dehydrogenase 89.3 0.38 8.3E-06 45.0 3.6 37 193-229 225-276 (309)
74 cd03031 GRX_GRX_like Glutaredo 86.6 0.68 1.5E-05 38.7 3.1 14 161-174 99-112 (147)
75 PF04216 FdhE: Protein involve 86.5 0.27 5.8E-06 44.7 0.7 36 194-229 211-262 (290)
76 COG1198 PriA Primosomal protei 84.7 0.94 2E-05 46.9 3.7 50 147-214 432-484 (730)
77 TIGR01562 FdhE formate dehydro 84.6 0.77 1.7E-05 42.9 2.7 36 194-229 224-276 (305)
78 KOG0712 Molecular chaperone (D 84.2 0.57 1.2E-05 44.4 1.7 78 107-206 100-198 (337)
79 PF07092 DUF1356: Protein of u 83.7 0.49 1.1E-05 42.9 1.0 29 193-221 26-54 (238)
80 KOG1829 Uncharacterized conser 79.2 0.65 1.4E-05 46.9 0.2 26 148-174 499-524 (580)
81 KOG2824 Glutaredoxin-related p 79.0 1.7 3.6E-05 40.4 2.7 12 207-218 264-275 (281)
82 TIGR00595 priA primosomal prot 78.0 2 4.3E-05 42.3 3.2 52 146-214 209-262 (505)
83 TIGR00630 uvra excinuclease AB 77.5 1.7 3.8E-05 46.0 2.7 12 163-174 738-749 (924)
84 PF07092 DUF1356: Protein of u 77.2 1.1 2.3E-05 40.7 1.0 25 151-175 28-52 (238)
85 PF13719 zinc_ribbon_5: zinc-r 77.0 2 4.3E-05 27.8 1.9 13 162-174 3-15 (37)
86 TIGR00630 uvra excinuclease AB 76.5 1.5 3.3E-05 46.5 2.0 24 195-218 737-772 (924)
87 PRK14873 primosome assembly pr 73.7 3 6.5E-05 42.7 3.2 50 147-214 380-431 (665)
88 KOG3088 Secretory carrier memb 71.7 8.6 0.00019 36.1 5.4 36 43-78 96-142 (313)
89 PRK00349 uvrA excinuclease ABC 71.4 3.2 6.9E-05 44.2 2.9 12 163-174 740-751 (943)
90 KOG0715 Molecular chaperone (D 70.6 2.3 5.1E-05 39.1 1.5 43 162-220 165-218 (288)
91 PRK00349 uvrA excinuclease ABC 70.5 2.3 5E-05 45.2 1.6 24 195-218 739-774 (943)
92 PRK05580 primosome assembly pr 69.1 4.1 8.8E-05 41.6 3.0 51 147-214 378-430 (679)
93 TIGR02098 MJ0042_CXXC MJ0042 f 68.0 5.3 0.00011 25.3 2.3 12 162-173 3-14 (38)
94 PRK00635 excinuclease ABC subu 65.0 5.1 0.00011 45.6 2.9 32 163-204 1609-1640(1809)
95 COG0178 UvrA Excinuclease ATPa 64.6 5.4 0.00012 42.3 2.8 13 163-175 732-744 (935)
96 PRK14892 putative transcriptio 64.2 7.4 0.00016 30.8 2.9 36 193-228 20-65 (99)
97 COG2260 Predicted Zn-ribbon RN 62.1 5.7 0.00012 28.9 1.8 33 195-230 6-39 (59)
98 PRK00635 excinuclease ABC subu 61.2 4.3 9.4E-05 46.1 1.6 10 163-172 742-751 (1809)
99 PRK13130 H/ACA RNA-protein com 58.9 6.1 0.00013 28.3 1.5 33 195-230 6-39 (56)
100 PRK04023 DNA polymerase II lar 58.8 6.4 0.00014 42.4 2.2 46 148-213 624-671 (1121)
101 PF13901 DUF4206: Domain of un 56.0 6.6 0.00014 34.2 1.5 50 149-212 141-196 (202)
102 TIGR03655 anti_R_Lar restricti 55.6 8 0.00017 26.6 1.6 12 162-173 2-13 (53)
103 PF03589 Antiterm: Antitermina 55.5 5.1 0.00011 31.3 0.7 39 162-206 6-44 (95)
104 PRK14714 DNA polymerase II lar 55.2 9 0.0002 42.2 2.6 44 150-213 667-717 (1337)
105 COG0178 UvrA Excinuclease ATPa 50.4 9.5 0.00021 40.5 1.8 23 195-217 731-765 (935)
106 PF14353 CpXC: CpXC protein 49.7 20 0.00042 28.5 3.2 14 162-175 2-15 (128)
107 COG3058 FdhE Uncharacterized p 47.2 2.8 6E-05 39.2 -2.3 35 194-228 225-275 (308)
108 PF05129 Elf1: Transcription e 46.0 13 0.00029 28.1 1.6 26 202-227 43-68 (81)
109 PF07295 DUF1451: Protein of u 44.5 15 0.00032 30.9 1.8 10 195-204 131-140 (146)
110 PF08271 TF_Zn_Ribbon: TFIIB z 43.8 15 0.00033 24.1 1.5 9 163-171 2-10 (43)
111 PRK14559 putative protein seri 42.8 17 0.00038 37.3 2.3 18 152-169 3-23 (645)
112 PRK12380 hydrogenase nickel in 42.7 10 0.00022 30.2 0.5 9 196-204 88-96 (113)
113 PF08273 Prim_Zn_Ribbon: Zinc- 42.0 13 0.00029 24.8 0.9 13 162-174 4-16 (40)
114 PRK09710 lar restriction allev 41.3 18 0.00039 26.7 1.6 17 206-222 28-44 (64)
115 COG2816 NPY1 NTP pyrophosphohy 41.2 19 0.00041 33.5 2.1 9 220-228 137-145 (279)
116 PRK00420 hypothetical protein; 40.5 19 0.00042 29.1 1.8 20 194-213 23-48 (112)
117 CHL00130 rbcS ribulose-1,5-bis 39.3 37 0.00081 28.6 3.4 49 55-114 7-55 (138)
118 PRK00295 hypothetical protein; 38.6 80 0.0017 23.0 4.7 47 4-52 22-68 (68)
119 PF13717 zinc_ribbon_4: zinc-r 38.4 22 0.00047 22.9 1.5 12 162-173 3-14 (36)
120 PF01155 HypA: Hydrogenase exp 36.9 11 0.00025 29.8 -0.0 10 162-171 71-80 (113)
121 PRK09263 anaerobic ribonucleos 36.4 27 0.0006 36.2 2.6 29 101-131 570-606 (711)
122 PF03833 PolC_DP2: DNA polymer 36.3 12 0.00026 39.8 0.0 45 150-214 655-701 (900)
123 COG1645 Uncharacterized Zn-fin 36.2 34 0.00074 28.5 2.7 19 194-212 28-51 (131)
124 PF13453 zf-TFIIB: Transcripti 36.0 25 0.00054 22.8 1.5 9 194-202 19-27 (41)
125 PF14369 zf-RING_3: zinc-finge 35.9 27 0.0006 22.4 1.7 7 196-202 23-29 (35)
126 smart00778 Prim_Zn_Ribbon Zinc 35.8 26 0.00057 23.0 1.6 13 162-174 4-16 (37)
127 TIGR00757 RNaseEG ribonuclease 35.5 16 0.00035 35.5 0.8 14 193-206 389-402 (414)
128 TIGR00100 hypA hydrogenase nic 35.3 16 0.00034 29.2 0.5 10 195-204 87-96 (115)
129 PRK00488 pheS phenylalanyl-tRN 35.2 23 0.00049 33.8 1.7 23 150-175 260-282 (339)
130 TIGR02487 NrdD anaerobic ribon 34.9 29 0.00064 34.9 2.5 33 97-131 448-488 (579)
131 TIGR00310 ZPR1_znf ZPR1 zinc f 34.6 27 0.00059 30.5 2.0 39 163-204 2-40 (192)
132 PF07295 DUF1451: Protein of u 34.5 32 0.00069 28.9 2.3 13 207-219 132-144 (146)
133 PRK11032 hypothetical protein; 34.3 27 0.00058 29.9 1.8 9 195-203 143-151 (160)
134 PF07754 DUF1610: Domain of un 32.9 31 0.00067 20.8 1.4 7 195-201 17-23 (24)
135 PHA03029 hypothetical protein; 32.9 29 0.00063 26.7 1.6 18 5-22 40-57 (92)
136 cd02432 Nodulin-21_like_1 Nodu 31.7 9.8 0.00021 33.7 -1.3 36 56-92 153-189 (218)
137 PHA01745 hypothetical protein 31.6 33 0.00071 32.2 2.1 38 54-92 102-139 (306)
138 PRK00464 nrdR transcriptional 31.5 73 0.0016 27.0 4.0 60 163-230 2-62 (154)
139 PF07282 OrfB_Zn_ribbon: Putat 30.9 38 0.00081 23.9 1.9 20 193-212 27-53 (69)
140 PRK00736 hypothetical protein; 30.8 1.3E+02 0.0028 21.9 4.8 33 3-37 21-53 (68)
141 PRK05978 hypothetical protein; 30.4 26 0.00055 29.7 1.1 16 195-211 34-58 (148)
142 TIGR01010 BexC_CtrB_KpsE polys 30.3 1.3E+02 0.0029 27.8 5.9 14 74-87 337-350 (362)
143 PF14205 Cys_rich_KTR: Cystein 30.2 33 0.00071 24.7 1.4 13 161-173 4-16 (55)
144 TIGR00757 RNaseEG ribonuclease 29.4 24 0.00052 34.3 0.8 15 207-221 392-406 (414)
145 smart00709 Zpr1 Duplicated dom 29.1 37 0.00081 28.8 1.9 38 163-204 2-39 (160)
146 PF12760 Zn_Tnp_IS1595: Transp 28.9 54 0.0012 21.8 2.3 9 195-203 19-27 (46)
147 PRK02119 hypothetical protein; 28.5 1.5E+02 0.0032 22.0 4.7 33 3-37 25-57 (73)
148 PRK00846 hypothetical protein; 28.2 1.5E+02 0.0032 22.5 4.8 47 4-52 30-77 (77)
149 PRK14714 DNA polymerase II lar 27.4 37 0.00081 37.7 1.9 18 196-213 681-700 (1337)
150 PF08792 A2L_zn_ribbon: A2L zi 27.2 56 0.0012 20.8 2.0 13 162-174 4-16 (33)
151 PRK10884 SH3 domain-containing 26.7 65 0.0014 28.4 3.0 73 5-92 122-194 (206)
152 TIGR00595 priA primosomal prot 26.5 35 0.00077 33.6 1.5 27 140-168 214-247 (505)
153 cd03527 RuBisCO_small Ribulose 26.1 66 0.0014 25.5 2.7 32 56-96 6-37 (99)
154 PF10571 UPF0547: Uncharacteri 25.9 41 0.00089 20.3 1.2 7 196-202 2-8 (26)
155 PF11119 DUF2633: Protein of u 25.9 38 0.00083 24.6 1.2 17 72-88 10-26 (59)
156 PLN02289 ribulose-bisphosphate 25.6 55 0.0012 28.6 2.3 35 55-98 69-103 (176)
157 PF15616 TerY-C: TerY-C metal 25.5 91 0.002 25.9 3.5 19 202-220 102-120 (131)
158 PRK00398 rpoP DNA-directed RNA 25.5 57 0.0012 21.5 1.9 7 163-169 5-11 (46)
159 PF02792 Mago_nashi: Mago nash 25.4 72 0.0016 27.0 2.9 28 19-52 52-79 (143)
160 PF00098 zf-CCHC: Zinc knuckle 25.0 43 0.00093 18.4 1.0 10 197-206 3-12 (18)
161 PRK02793 phi X174 lysis protei 24.8 1.9E+02 0.0041 21.3 4.8 34 3-38 24-57 (72)
162 TIGR01206 lysW lysine biosynth 24.7 69 0.0015 22.7 2.3 20 207-227 24-43 (54)
163 KOG2041 WD40 repeat protein [G 24.4 62 0.0013 34.5 2.7 138 61-213 1010-1182(1189)
164 PRK14704 anaerobic ribonucleos 24.3 77 0.0017 32.5 3.4 72 97-170 482-581 (618)
165 PRK14873 primosome assembly pr 24.1 50 0.0011 34.0 2.1 29 139-169 383-418 (665)
166 COG4624 Iron only hydrogenase 23.6 55 0.0012 32.1 2.1 73 17-101 120-192 (411)
167 PRK04406 hypothetical protein; 23.3 2E+02 0.0044 21.4 4.7 32 4-37 28-59 (75)
168 PRK11712 ribonuclease G; Provi 23.1 37 0.0008 33.8 0.9 13 194-206 402-414 (489)
169 PF07216 LcrG: LcrG protein; 23.0 47 0.001 26.2 1.3 13 20-32 61-73 (93)
170 PRK00488 pheS phenylalanyl-tRN 22.6 38 0.00083 32.2 0.9 21 194-217 260-280 (339)
171 PRK00564 hypA hydrogenase nick 22.4 34 0.00073 27.4 0.4 8 196-203 90-97 (117)
172 PF11652 DUF3259: Protein of u 22.4 96 0.0021 24.1 2.8 41 7-49 4-51 (84)
173 PRK03824 hypA hydrogenase nick 22.2 36 0.00077 27.9 0.5 11 160-170 69-79 (135)
174 COG3064 TolA Membrane protein 21.9 45 0.00098 32.0 1.1 26 71-96 13-38 (387)
175 COG5082 AIR1 Arginine methyltr 21.8 58 0.0013 28.8 1.7 46 147-206 57-109 (190)
176 TIGR00340 zpr1_rel ZPR1-relate 21.6 62 0.0013 27.6 1.8 38 164-204 1-38 (163)
177 COG1198 PriA Primosomal protei 20.7 56 0.0012 34.2 1.7 44 139-204 435-485 (730)
178 PF05385 Adeno_E4: Mastadenovi 20.5 1.3E+02 0.0029 24.4 3.4 39 56-94 3-49 (109)
179 PTZ00368 universal minicircle 20.5 1.2E+02 0.0026 24.5 3.3 12 195-206 78-89 (148)
180 PF04102 SlyX: SlyX; InterPro 20.5 1.2E+02 0.0027 21.9 3.0 32 3-36 20-51 (69)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.2e-12 Score=121.37 Aligned_cols=69 Identities=23% Similarity=0.630 Sum_probs=57.7
Q ss_pred cceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCC
Q 026955 143 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLC 213 (230)
Q Consensus 143 n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~G 213 (230)
.+++..+...|+.|+|+|+ .+|+.|+|+|++...+. + | .++.+++|++|+|+|++ +|++|+|
T Consensus 135 ~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~--~----g---~~~~~~~C~~C~G~G~~i~~pC~~C~G 205 (371)
T COG0484 135 KEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQR--T----G---FFSFQQTCPTCNGTGKIIKDPCGKCKG 205 (371)
T ss_pred eeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEe--e----e---EEEEEEECCCCccceeECCCCCCCCCC
Confidence 3567888999999999986 69999999999976541 1 2 35678999999999998 8999999
Q ss_pred eeEEece
Q 026955 214 TGMAMAS 220 (230)
Q Consensus 214 tG~~~~~ 220 (230)
.|.+.+.
T Consensus 206 ~G~v~~~ 212 (371)
T COG0484 206 KGRVKKK 212 (371)
T ss_pred CCeEeee
Confidence 9997654
No 2
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=99.16 E-value=1.2e-11 Score=99.03 Aligned_cols=73 Identities=27% Similarity=0.673 Sum_probs=58.0
Q ss_pred hhhhccce-eecceeecccccccccccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCceeeCCCCCCeeE
Q 026955 138 MIVEVNNV-KQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGM 216 (230)
Q Consensus 138 ~vve~n~v-k~~~~k~C~~C~GtG~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv~C~tC~GtG~ 216 (230)
++-..++. +.+....|..|+|+|...|+.|+|+|++.... + + .++.+++|++|.|+|+..|++|+|+|.
T Consensus 28 ~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~------~-g---~~q~~~~C~~C~G~Gk~~C~~C~G~G~ 97 (111)
T PLN03165 28 YETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL------G-G---GEKEVSKCINCDGAGSLTCTTCQGSGI 97 (111)
T ss_pred EEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe------C-C---cEEEEEECCCCCCcceeeCCCCCCCEE
Confidence 33334443 67788999999999999999999999987432 1 1 135678999999999999999999999
Q ss_pred Eece
Q 026955 217 AMAS 220 (230)
Q Consensus 217 ~~~~ 220 (230)
..+.
T Consensus 98 ~~~~ 101 (111)
T PLN03165 98 QPRY 101 (111)
T ss_pred Eeee
Confidence 8653
No 3
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=5.1e-11 Score=111.30 Aligned_cols=97 Identities=22% Similarity=0.484 Sum_probs=71.8
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc------ccCCCCccccEEEeeeccccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 182 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~ 182 (230)
.++++..+++.| +|.|... +++..+...|..|+|+|. ..|+.|+|+|++.... .
T Consensus 127 di~~~l~~slee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----~ 186 (369)
T PRK14282 127 DIRYEIEVTLSD----LINGAEI------------PVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREER----R 186 (369)
T ss_pred CeEEEEEEEHHH----hcCCeEE------------EEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEE----E
Confidence 345555666666 6777644 566777889999999996 5899999999987542 3
Q ss_pred cCCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEece-ecCCCCCC
Q 026955 183 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 228 (230)
Q Consensus 183 ~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~-ehD~~idp 228 (230)
.++|+ ++...+|+.|+|+|++ .|++|+|.|.+... ..+..|.|
T Consensus 187 ~~~G~---~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 233 (369)
T PRK14282 187 SFFGV---FVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPA 233 (369)
T ss_pred ccCcc---eEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCC
Confidence 34563 4567899999999987 89999999988763 33444433
No 4
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=7.7e-11 Score=110.66 Aligned_cols=78 Identities=28% Similarity=0.607 Sum_probs=60.3
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
++...+...|..|+|+|. ..|+.|+|+|.+..... .+.| .++.+.+|+.|.|+|+. +|+.|+|.
T Consensus 135 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~----~~~g---~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 207 (377)
T PRK14298 135 DIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRS----TPLG---QFVTTTTCSTCHGRGQVIESPCPVCSGT 207 (377)
T ss_pred EEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEe----cCce---eEEEEEeCCCCCCCCcccCCCCCCCCCc
Confidence 566777889999999996 68999999999876431 2333 34677899999999987 89999999
Q ss_pred eEEece-ecCCCCCC
Q 026955 215 GMAMAS-EHDPRIDP 228 (230)
Q Consensus 215 G~~~~~-ehD~~idp 228 (230)
|.+... ..+..|.|
T Consensus 208 g~v~~~~~l~V~Ipp 222 (377)
T PRK14298 208 GKVRKTRKITVNVPA 222 (377)
T ss_pred cEEEEEEEEEecCCC
Confidence 998753 34444444
No 5
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.04 E-value=1.2e-10 Score=107.85 Aligned_cols=89 Identities=22% Similarity=0.499 Sum_probs=68.7
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc------ccCCCCccccEEEeeeccccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 182 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~ 182 (230)
.++++..+++.| .|.|... +++..+...|..|+|+|. ..|..|+|+|.+... ..
T Consensus 118 d~~~~l~vsLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~ 177 (354)
T TIGR02349 118 DLRYDLELTFEE----AVFGVEK------------EIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQ----QG 177 (354)
T ss_pred CeEEEEEEEHHH----HhCCeeE------------EEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEE----Ee
Confidence 455556666666 6677644 566777889999999995 589999999998754 23
Q ss_pred cCCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEece
Q 026955 183 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS 220 (230)
Q Consensus 183 ~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~ 220 (230)
.++|+ ++.+.+|++|.|+|+. +|+.|+|.|.+...
T Consensus 178 ~~~g~---~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 215 (354)
T TIGR02349 178 TPFGF---FQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKER 215 (354)
T ss_pred ccCCc---eEEEEecCCCCCcceecCCCCCCCCCCcEeccc
Confidence 45664 4457799999999997 79999999988653
No 6
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=1.4e-10 Score=108.90 Aligned_cols=69 Identities=28% Similarity=0.622 Sum_probs=56.1
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++..+...|..|+|+|. ..|+.|+|+|.+... ...++|+ ++...+|+.|.|+|++ +|+.|+|.
T Consensus 140 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~G~---~~~~~~C~~C~G~G~~~~~~C~~C~G~ 212 (380)
T PRK14276 140 EVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVD----TQTPLGM---MRRQVTCDVCHGTGKEIKEPCQTCHGT 212 (380)
T ss_pred EEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEE----EecCCce---EEEEEECCCCCCCCccccCCCCCCCCc
Confidence 566778889999999995 589999999998754 2334453 4457899999999987 89999999
Q ss_pred eEEec
Q 026955 215 GMAMA 219 (230)
Q Consensus 215 G~~~~ 219 (230)
|.+..
T Consensus 213 g~~~~ 217 (380)
T PRK14276 213 GHEKQ 217 (380)
T ss_pred eEEEE
Confidence 99754
No 7
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=1.4e-10 Score=108.96 Aligned_cols=78 Identities=26% Similarity=0.538 Sum_probs=59.3
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++..+...|..|+|+|. ..|+.|+|+|++.... ..++|+ ++..++|+.|+|+|++ +|+.|+|.
T Consensus 133 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----~~~~g~---~~~~~~C~~C~G~G~~~~~~C~~C~G~ 205 (378)
T PRK14278 133 QVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQ----RSFLGQ---VMTSRPCPTCRGVGEVIPDPCHECAGD 205 (378)
T ss_pred EEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEE----ecccee---EEEEEECCCCCccceeeCCCCCCCCCc
Confidence 566778889999999995 5899999999987543 123342 4457799999999987 89999999
Q ss_pred eEEece-ecCCCCCC
Q 026955 215 GMAMAS-EHDPRIDP 228 (230)
Q Consensus 215 G~~~~~-ehD~~idp 228 (230)
|.+.+. ..+..|.|
T Consensus 206 g~v~~~~~~~V~Ip~ 220 (378)
T PRK14278 206 GRVRARREITVKIPA 220 (378)
T ss_pred eeEecceEEEEEECC
Confidence 998653 33444443
No 8
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=1.7e-10 Score=108.21 Aligned_cols=69 Identities=25% Similarity=0.625 Sum_probs=55.4
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++..+...|..|+|+|. ..|+.|+|+|.+.... ..|+. .++...+|+.|.|+|++ +|+.|+|.
T Consensus 143 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----~~g~~---~~q~~~~C~~C~G~G~~~~~~C~~C~G~ 215 (372)
T PRK14296 143 IIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQK----NMGFF---QFQQSAKCNVCNGAGKIIKNKCKNCKGK 215 (372)
T ss_pred EEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEE----eccce---EEEEEecCCCcCCcceeecccccCCCCc
Confidence 566778889999999996 5799999999987643 22332 24567899999999997 79999999
Q ss_pred eEEec
Q 026955 215 GMAMA 219 (230)
Q Consensus 215 G~~~~ 219 (230)
|.+..
T Consensus 216 g~v~~ 220 (372)
T PRK14296 216 GKYLE 220 (372)
T ss_pred eEEEE
Confidence 98755
No 9
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=1.9e-10 Score=107.86 Aligned_cols=70 Identities=23% Similarity=0.651 Sum_probs=56.2
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++..+...|..|+|+|. ..|+.|+|+|++.... ..++|+ ++.+.+|+.|.|+|++ +|+.|+|.
T Consensus 137 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----~~~~g~---~~~~~~C~~C~G~G~~~~~~C~~C~G~ 209 (376)
T PRK14280 137 EIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQ----NTPFGR---VVNRQTCPHCNGTGQEIKEKCPTCHGK 209 (376)
T ss_pred EEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEe----ecCCce---EEEEEEcCCCCCCCceecCCCCCCCCc
Confidence 567778889999999995 5899999999987542 223443 3457799999999987 79999999
Q ss_pred eEEece
Q 026955 215 GMAMAS 220 (230)
Q Consensus 215 G~~~~~ 220 (230)
|.+...
T Consensus 210 g~v~~~ 215 (376)
T PRK14280 210 GKVRKR 215 (376)
T ss_pred eEEEEE
Confidence 998653
No 10
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.02 E-value=2.1e-10 Score=83.22 Aligned_cols=56 Identities=32% Similarity=0.806 Sum_probs=42.4
Q ss_pred ccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee----eCCCCCCee
Q 026955 153 CKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV----MCPTCLCTG 215 (230)
Q Consensus 153 C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv----~C~tC~GtG 215 (230)
|+.|+|+|. ..|+.|+|+|++.... ..+++ .++...+|+.|+|+|++ +|++|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----~~~~~---~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQ----QTPGG---VFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEE----ESSST---TEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEE----eCCCe---EEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 889999997 5999999999998643 22233 46778899999999998 599999986
No 11
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=1.8e-10 Score=108.30 Aligned_cols=96 Identities=21% Similarity=0.470 Sum_probs=68.9
Q ss_pred eeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc------ccCCCCccccEEEeeecccccc
Q 026955 110 VHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVN 183 (230)
Q Consensus 110 ~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~ 183 (230)
+++...+++.| +|.|... +++..+...|..|+|+|. ..|+.|+|+|++.... ..
T Consensus 131 i~~~l~vtLee----~~~G~~~------------~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----~~ 190 (386)
T PRK14277 131 IRYDLELTFEE----AAFGTEK------------EIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQ----NT 190 (386)
T ss_pred EEEEEEEEHHH----HhCCeEE------------EEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEE----ec
Confidence 44444555555 5666543 666778889999999995 5899999999987542 33
Q ss_pred CCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEece-ecCCCCCC
Q 026955 184 GGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 228 (230)
Q Consensus 184 g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~-ehD~~idp 228 (230)
++|. ++...+|+.|.|+|++ +|++|+|.|.+... .....|.|
T Consensus 191 ~~G~---~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 236 (386)
T PRK14277 191 PFGR---IVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPA 236 (386)
T ss_pred cCce---EEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCC
Confidence 4553 3455799999999997 79999999998553 23444443
No 12
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=1.8e-10 Score=108.02 Aligned_cols=74 Identities=24% Similarity=0.587 Sum_probs=58.4
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++..+...|..|+|+|. ..|+.|+|+|.+.... |+ ++..++|+.|.|+|++ .|++|+|.
T Consensus 144 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--------G~---~~~~~~C~~C~G~G~~~~~~C~~C~G~ 212 (372)
T PRK14286 144 KIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ--------GF---FSVATTCPTCRGKGTVISNPCKTCGGQ 212 (372)
T ss_pred EEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe--------ce---EEEEEeCCCCCceeeEecccCCCCCCC
Confidence 566778889999999996 6899999999986531 32 3567799999999987 89999999
Q ss_pred eEEece-ecCCCCCC
Q 026955 215 GMAMAS-EHDPRIDP 228 (230)
Q Consensus 215 G~~~~~-ehD~~idp 228 (230)
|.+... ..+..|.|
T Consensus 213 g~~~~~~~l~V~Ip~ 227 (372)
T PRK14286 213 GLQEKRRTINIKIPP 227 (372)
T ss_pred cEEecceEEEEEECC
Confidence 998763 44444444
No 13
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=2.1e-10 Score=108.20 Aligned_cols=74 Identities=26% Similarity=0.650 Sum_probs=57.7
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++..+...|..|+|+|. ..|+.|+|+|++.... | .++...+|+.|.|+|++ +|++|+|.
T Consensus 167 ~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--------g---~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 235 (392)
T PRK14279 167 PLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--------G---AFGFSEPCTDCRGTGSIIEDPCEECKGT 235 (392)
T ss_pred EEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe--------c---ceEEEEecCCCCceeEEeCCcCCCCCCC
Confidence 566777889999999996 5899999999987532 2 13456899999999997 89999999
Q ss_pred eEEece-ecCCCCCC
Q 026955 215 GMAMAS-EHDPRIDP 228 (230)
Q Consensus 215 G~~~~~-ehD~~idp 228 (230)
|.+... .....|.|
T Consensus 236 g~v~~~~~~~V~Ip~ 250 (392)
T PRK14279 236 GVTTRTRTINVRIPP 250 (392)
T ss_pred eEEEEeeeeEEEeCC
Confidence 998653 34444443
No 14
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=2.3e-10 Score=108.07 Aligned_cols=97 Identities=24% Similarity=0.503 Sum_probs=71.6
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc-----ccCCCCccccEEEeeecccccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVN 183 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~-----~~C~~C~GSG~v~~~~~~~~~~ 183 (230)
.+++...+++.| +|.|... +++..+...|..|+|+|. ..|+.|+|+|.+.... ..
T Consensus 138 di~~~l~vtLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~----~~ 197 (397)
T PRK14281 138 DLKIRLKLTLEE----IAKGVEK------------TLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQAS----KT 197 (397)
T ss_pred CEEEEEEeEHHH----HhCCeEE------------EEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEE----ec
Confidence 344555566666 6777644 667778889999999996 5799999999987543 22
Q ss_pred CCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEece-ecCCCCCC
Q 026955 184 GGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 228 (230)
Q Consensus 184 g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~-ehD~~idp 228 (230)
+.|. ++..++|+.|.|+|++ +|+.|+|.|.+... ..+..|.|
T Consensus 198 ~~g~---~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~ 243 (397)
T PRK14281 198 MFGQ---FVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVPA 243 (397)
T ss_pred ccce---EEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecCC
Confidence 3342 3456799999999987 89999999998764 44555544
No 15
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=4.3e-10 Score=105.50 Aligned_cols=69 Identities=29% Similarity=0.627 Sum_probs=55.6
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++..+...|..|+|+|. ..|+.|+|+|++.... ..++|. ++.+.+|+.|.|+|++ +|++|+|.
T Consensus 142 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----~~~~G~---~~~~~~C~~C~G~G~~~~~~C~~C~G~ 214 (380)
T PRK14297 142 EISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQR----NTPLGS---FVSTTTCDKCGGSGKVIEDPCNKCHGK 214 (380)
T ss_pred EEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEEE----EcCCce---eEEEEeCCCCCCCceEcCCCCCCCCCC
Confidence 566778889999999995 5899999999987542 234452 4567899999999987 89999999
Q ss_pred eEEec
Q 026955 215 GMAMA 219 (230)
Q Consensus 215 G~~~~ 219 (230)
|.+..
T Consensus 215 g~v~~ 219 (380)
T PRK14297 215 GKVRK 219 (380)
T ss_pred eEEEe
Confidence 97653
No 16
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.97 E-value=4e-10 Score=105.18 Aligned_cols=93 Identities=19% Similarity=0.501 Sum_probs=69.3
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc------ccCCCCccccEEEeeeccccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 182 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~ 182 (230)
.++++..+++.| +|.|..+ +++..+...|..|+|+|. ..|+.|+|+|.+....
T Consensus 117 di~~~l~vsLee----~~~G~~~------------~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----- 175 (371)
T PRK10767 117 DLRYNMEITLEE----AVRGVTK------------EIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ----- 175 (371)
T ss_pred CeEEEEEeehHH----hhCCeeE------------EEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee-----
Confidence 455556666666 6777644 566777889999999995 4899999999886431
Q ss_pred cCCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEec-eecCCCCCC
Q 026955 183 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA-SEHDPRIDP 228 (230)
Q Consensus 183 ~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~-~ehD~~idp 228 (230)
|+ ++...+|+.|.|+|+. .|+.|+|.|.+.. .+.+..|.|
T Consensus 176 ---g~---~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 219 (371)
T PRK10767 176 ---GF---FTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPA 219 (371)
T ss_pred ---ce---EEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCC
Confidence 32 3456799999999987 8999999999865 334445544
No 17
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=4.2e-10 Score=105.48 Aligned_cols=93 Identities=24% Similarity=0.534 Sum_probs=68.2
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc------ccCCCCccccEEEeeeccccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 182 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~ 182 (230)
.++++..+++.| +|+|..+ +++..+...|..|+|+|. ..|+.|+|+|++....
T Consensus 119 di~~~l~vtLee----~~~G~~k------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----- 177 (373)
T PRK14301 119 DLRYNLTVSFRQ----AAKGDEV------------TLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ----- 177 (373)
T ss_pred CEEEEEeccHHH----HhCCceE------------EEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe-----
Confidence 344455555555 6666644 566677889999999996 5799999999987431
Q ss_pred cCCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEece-ecCCCCCC
Q 026955 183 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 228 (230)
Q Consensus 183 ~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~-ehD~~idp 228 (230)
|+ ++...+|+.|.|+|++ .|+.|+|.|.+... .....|.|
T Consensus 178 ---G~---~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 221 (373)
T PRK14301 178 ---GF---FQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPA 221 (373)
T ss_pred ---ee---EEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCC
Confidence 22 3457899999999997 89999999998653 44444444
No 18
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=3.6e-10 Score=105.83 Aligned_cols=96 Identities=20% Similarity=0.511 Sum_probs=70.5
Q ss_pred eeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc------ccCCCCccccEEEeeecccccc
Q 026955 110 VHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVN 183 (230)
Q Consensus 110 ~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~ 183 (230)
+.++..+++.| +|.|... +++..+...|..|+|+|. ..|+.|+|+|.+.... ..
T Consensus 119 i~~~l~vsLee----~~~G~~k------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----~~ 178 (374)
T PRK14293 119 LRYDLKLDFRE----AIFGGEK------------EIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRAT----RT 178 (374)
T ss_pred eEEEEEeeHHH----HhCCceE------------EEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEE----ec
Confidence 44455566666 6777643 666777889999999996 4799999999987542 33
Q ss_pred CCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEeceec-CCCCCC
Q 026955 184 GGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMASEH-DPRIDP 228 (230)
Q Consensus 184 g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~eh-D~~idp 228 (230)
++|+ ++...+|+.|.|.|++ .|++|+|.|.+...+. +..|.|
T Consensus 179 ~~g~---~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ipp 224 (374)
T PRK14293 179 PFGS---FTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPA 224 (374)
T ss_pred Ccce---EEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCC
Confidence 4453 3456899999999998 8999999999866433 444444
No 19
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=4.3e-10 Score=105.93 Aligned_cols=74 Identities=26% Similarity=0.574 Sum_probs=57.3
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++..+...|..|+|+|. ..|+.|+|+|.+.... |+ ++...+|++|+|+|++ +|+.|+|.
T Consensus 152 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--------G~---~~~~~~C~~C~G~G~~~~~~C~~C~G~ 220 (391)
T PRK14284 152 ELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR--------GF---FSMASTCPECGGEGRVITDPCSVCRGQ 220 (391)
T ss_pred EEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe--------ce---EEEEEECCCCCCCCcccCCcCCCCCCc
Confidence 566677889999999996 5799999999987431 22 3467799999999987 89999999
Q ss_pred eEEece-ecCCCCCC
Q 026955 215 GMAMAS-EHDPRIDP 228 (230)
Q Consensus 215 G~~~~~-ehD~~idp 228 (230)
|.+... .-+..|.|
T Consensus 221 g~v~~~~~l~V~Ip~ 235 (391)
T PRK14284 221 GRIKDKRSVHVHIPA 235 (391)
T ss_pred ceecceEEEEEEECC
Confidence 998653 33444443
No 20
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=5.8e-10 Score=104.45 Aligned_cols=85 Identities=25% Similarity=0.527 Sum_probs=65.1
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc-----ccCCCCccccEEEeeecccccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVN 183 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~-----~~C~~C~GSG~v~~~~~~~~~~ 183 (230)
.+.++..+++.| +|.|... +++..+...|..|+|+|. ..|+.|+|+|.+....
T Consensus 115 di~~~l~vslee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~------ 172 (369)
T PRK14288 115 DYLQTIELSFKE----AVFGCKK------------TIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ------ 172 (369)
T ss_pred CeeEeccccHHH----HhCCeEE------------EEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe------
Confidence 445555666666 6777644 666677889999999995 5899999999986432
Q ss_pred CCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEece
Q 026955 184 GGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS 220 (230)
Q Consensus 184 g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~ 220 (230)
|. ++..++|+.|.|+|++ +|+.|+|.|.+...
T Consensus 173 --g~---~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 207 (369)
T PRK14288 173 --GF---MSFAQTCGACQGKGKIIKTPCQACKGKTYILKD 207 (369)
T ss_pred --ce---EEEEEecCCCCCCceEccccCccCCCcceEEEE
Confidence 22 3456799999999987 89999999998653
No 21
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=5.2e-10 Score=104.77 Aligned_cols=85 Identities=21% Similarity=0.552 Sum_probs=66.0
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc------ccCCCCccccEEEeeeccccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 182 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~ 182 (230)
.++++..+++.| +|.|... +++..+...|..|+|+|. ..|+.|+|+|.+....
T Consensus 120 di~~~l~~sLee----~~~G~~k------------~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~----- 178 (372)
T PRK14300 120 DLKYNLTINLEE----AFHGIEK------------NISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQ----- 178 (372)
T ss_pred CeeEEEEEEHHH----HhCCceE------------EEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEEEee-----
Confidence 455666666666 6777644 566677889999999995 5899999999987421
Q ss_pred cCCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEece
Q 026955 183 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS 220 (230)
Q Consensus 183 ~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~ 220 (230)
|+ ++...+|+.|.|+|++ +|++|+|.|.+...
T Consensus 179 ---g~---~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 213 (372)
T PRK14300 179 ---GF---FTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQ 213 (372)
T ss_pred ---ce---EEEEEeCCCCCccceEeCCCCCCCCCceEEEee
Confidence 32 3456799999999987 89999999998653
No 22
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=6.4e-10 Score=104.19 Aligned_cols=69 Identities=25% Similarity=0.618 Sum_probs=55.7
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++..+...|..|+|+|. ..|+.|+|+|++.... ..++|+ ++...+|+.|.|+|++ +|+.|.|.
T Consensus 132 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----~~~~G~---~~~~~~C~~C~G~G~~~~~~C~~C~G~ 204 (371)
T PRK14287 132 EIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQ----NTPFGR---VVNRRVCHHCEGTGKIIKQKCATCGGK 204 (371)
T ss_pred EEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEE----ecCCce---EEEEEeCCCCCCCCccccccCCCCCCe
Confidence 567778889999999995 5899999999987542 334453 3456799999999987 89999999
Q ss_pred eEEec
Q 026955 215 GMAMA 219 (230)
Q Consensus 215 G~~~~ 219 (230)
|.+..
T Consensus 205 g~v~~ 209 (371)
T PRK14287 205 GKVRK 209 (371)
T ss_pred eEEee
Confidence 98854
No 23
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=5.7e-10 Score=105.23 Aligned_cols=73 Identities=33% Similarity=0.646 Sum_probs=57.1
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++..+...|..|+|+|. ..|+.|+|+|++.... + + ++.+.+|+.|.|+|++ +|+.|.|.
T Consensus 160 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------g-~----~~~~~~C~~C~G~G~~~~~~C~~C~G~ 228 (389)
T PRK14295 160 PLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS------G-G----FSLSEPCPDCKGRGLIADDPCLVCKGS 228 (389)
T ss_pred EEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe------c-c----eEEEEecCCCcceeEEeccCCCCCCCC
Confidence 566778889999999995 5899999999987531 1 2 3467799999999997 79999999
Q ss_pred eEEece-ecCCCCC
Q 026955 215 GMAMAS-EHDPRID 227 (230)
Q Consensus 215 G~~~~~-ehD~~id 227 (230)
|.+... ..+..|.
T Consensus 229 g~~~~~~~l~V~Ip 242 (389)
T PRK14295 229 GRAKSSRTMQVRIP 242 (389)
T ss_pred ceEeeeeEEEEEeC
Confidence 988653 3344443
No 24
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=6.6e-10 Score=103.92 Aligned_cols=74 Identities=27% Similarity=0.619 Sum_probs=58.0
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++..+...|..|+|+|. ..|+.|+|+|++.. +.|+ ++.+.+|+.|.|+|++ +|++|+|.
T Consensus 140 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~--------~~G~---~~~~~~C~~C~G~G~~~~~~C~~C~G~ 208 (365)
T PRK14285 140 NINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQ--------GGGF---FRVTTTCPKCYGNGKIISNPCKSCKGK 208 (365)
T ss_pred EEEeeecccCCCCCCcccCCCCCCccCCCccCceeEEe--------cCce---eEEeeecCCCCCcccccCCCCCCCCCC
Confidence 566778889999999995 58999999998863 1243 3567899999999987 89999999
Q ss_pred eEEece-ecCCCCCC
Q 026955 215 GMAMAS-EHDPRIDP 228 (230)
Q Consensus 215 G~~~~~-ehD~~idp 228 (230)
|.+... ..+..|.|
T Consensus 209 g~v~~~~~~~V~Ip~ 223 (365)
T PRK14285 209 GSLKKKETIELKIPA 223 (365)
T ss_pred CEEeccEEEEEEECC
Confidence 988653 33444444
No 25
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=6.4e-10 Score=104.44 Aligned_cols=89 Identities=22% Similarity=0.514 Sum_probs=68.2
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc------ccCCCCccccEEEeeeccccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 182 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~ 182 (230)
.+++...+++.| +|.|... +++..+.+.|..|+|+|. ..|+.|+|+|.+.... .
T Consensus 129 di~~~l~vsLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----~ 188 (386)
T PRK14289 129 DLRVKVKLNLKE----ISTGVEK------------KFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQ----N 188 (386)
T ss_pred CeEEEEEEEHHH----hhCCeEE------------EEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEE----e
Confidence 345555566666 6777643 666777889999999996 5899999999987642 3
Q ss_pred cCCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEece
Q 026955 183 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS 220 (230)
Q Consensus 183 ~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~ 220 (230)
.+.|. ++...+|+.|.|+|++ .|+.|+|.|.+...
T Consensus 189 ~~~G~---~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 226 (386)
T PRK14289 189 TILGT---MQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGE 226 (386)
T ss_pred cccce---EEEEEecCCCCccccccCcCCCCCCCCcEEeee
Confidence 34453 3457899999999987 89999999998754
No 26
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.91 E-value=8.2e-10 Score=105.47 Aligned_cols=78 Identities=26% Similarity=0.566 Sum_probs=58.0
Q ss_pred ceeecceeeccccccccc-----ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee-----eCCCCCC
Q 026955 144 NVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----MCPTCLC 213 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~-----~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv-----~C~tC~G 213 (230)
+++..+...|..|+|+|. ..|+.|+|+|++.... ..++ + .++...+|+.|+|+|++ +|++|+|
T Consensus 144 ~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~----~~g~-~--~~q~~~~C~~C~G~G~~i~~~~~C~~C~G 216 (421)
T PTZ00037 144 KLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIR----QMGS-M--IHQTQSTCNSCNGQGKIIPESKKCKNCSG 216 (421)
T ss_pred EEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEE----eecc-e--eeEEEEeCCCCCCcceeccccccCCcCCC
Confidence 566677889999999996 5899999999865432 1222 1 24567899999999986 6999999
Q ss_pred eeEEece-ecCCCCCC
Q 026955 214 TGMAMAS-EHDPRIDP 228 (230)
Q Consensus 214 tG~~~~~-ehD~~idp 228 (230)
.|.+... .....|+|
T Consensus 217 ~g~v~~~~~l~V~Ip~ 232 (421)
T PTZ00037 217 KGVKKTRKILEVNIDK 232 (421)
T ss_pred cceeeeeeEEEEeeCC
Confidence 9998753 33444443
No 27
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=8.1e-10 Score=103.20 Aligned_cols=92 Identities=24% Similarity=0.538 Sum_probs=66.9
Q ss_pred eeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc------ccCCCCccccEEEeeecccccc
Q 026955 110 VHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVN 183 (230)
Q Consensus 110 ~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~ 183 (230)
++++..+++.| +|.|..+ +++..+...|..|+|+|. ..|+.|+|+|.+....
T Consensus 120 ~~~~l~lslee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~------ 177 (366)
T PRK14294 120 LRYDLTLPFLE----AAFGTEK------------EIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ------ 177 (366)
T ss_pred ceEEEEeeHHH----hcCCeEE------------EEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe------
Confidence 44445555555 5666544 566677889999999996 4899999999986421
Q ss_pred CCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEece-ecCCCCCC
Q 026955 184 GGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS-EHDPRIDP 228 (230)
Q Consensus 184 g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~-ehD~~idp 228 (230)
|+ ++.+.+|+.|.|+|+. .|+.|+|.|.+... ..+..|.|
T Consensus 178 --G~---~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 221 (366)
T PRK14294 178 --GF---FSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPA 221 (366)
T ss_pred --ee---EEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCC
Confidence 32 3457899999999997 89999999998653 33444443
No 28
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.89 E-value=1.2e-09 Score=101.94 Aligned_cols=89 Identities=26% Similarity=0.645 Sum_probs=66.8
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc-----ccCCCCccccEEEeeecccccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVN 183 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~-----~~C~~C~GSG~v~~~~~~~~~~ 183 (230)
.+++...+++.| +|.|..+ +++..+...|..|+|+|. ..|+.|+|+|++....
T Consensus 124 di~~~l~lsLee----~~~G~~~------------~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~------ 181 (365)
T PRK14290 124 DIYTNLDISLED----AYYGTEK------------RIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVR------ 181 (365)
T ss_pred CEEEEEEecHHH----hcCCEEE------------EEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEe------
Confidence 344555666666 6777754 667777889999999996 5899999999886532
Q ss_pred CCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEece
Q 026955 184 GGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS 220 (230)
Q Consensus 184 g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~ 220 (230)
.+|+ ..++...+|+.|.|.|++ +|+.|+|.|.+...
T Consensus 182 ~~g~-~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 220 (365)
T PRK14290 182 GQGF-FRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVN 220 (365)
T ss_pred ccCe-EEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEe
Confidence 1232 123456799999999987 89999999998763
No 29
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=1.4e-09 Score=102.22 Aligned_cols=85 Identities=22% Similarity=0.595 Sum_probs=66.2
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc------ccCCCCccccEEEeeeccccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 182 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~ 182 (230)
.++++..+++.| +|.|... +++..+...|..|+|+|. ..|+.|+|+|.+....
T Consensus 131 di~~~l~vsLee----~~~G~~~------------~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----- 189 (382)
T PRK14291 131 DIYQTVEISLEE----AYTGTTV------------SLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRG----- 189 (382)
T ss_pred CEEEEEEEEHHH----hhCCEEE------------EEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEec-----
Confidence 455566667776 7777754 666777889999999995 6899999999887531
Q ss_pred cCCCCCCCCCCcccCCCCCcCcee--eCCCCCCeeEEece
Q 026955 183 NGGDQPLSAPKTERCSNCSGSGKV--MCPTCLCTGMAMAS 220 (230)
Q Consensus 183 ~g~G~~~~~~~~~~Cp~C~G~Gkv--~C~tC~GtG~~~~~ 220 (230)
| .++...+|+.|.|+|.+ +|+.|+|.|.+...
T Consensus 190 ---g---~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~ 223 (382)
T PRK14291 190 ---G---FFRISQTCPTCGGEGVLREPCSKCNGRGLVIKK 223 (382)
T ss_pred ---c---eEEEEecCCCCCCceEEccCCCCCCCCceEEee
Confidence 2 23557899999999976 89999999988653
No 30
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=1.5e-09 Score=101.86 Aligned_cols=69 Identities=26% Similarity=0.634 Sum_probs=55.1
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++..+...|+.|+|+|. ..|+.|+|+|.+.... ..+.|+ ++...+|++|.|+|+. +|.+|+|.
T Consensus 140 ~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----~~~~g~---~~~~~~C~~C~G~G~~~~~~C~~C~G~ 212 (378)
T PRK14283 140 DIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVR----NTILGQ---MMNVTTCPDCQGEGKIVEKPCSNCHGK 212 (378)
T ss_pred EEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEE----eccCce---EEEEEECCCCCccceecCCCCCCCCCc
Confidence 566677889999999985 5799999999987542 223442 3456799999999987 89999999
Q ss_pred eEEec
Q 026955 215 GMAMA 219 (230)
Q Consensus 215 G~~~~ 219 (230)
|.+..
T Consensus 213 g~v~~ 217 (378)
T PRK14283 213 GVVRE 217 (378)
T ss_pred eeecc
Confidence 98865
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=1.8e-09 Score=100.90 Aligned_cols=89 Identities=18% Similarity=0.461 Sum_probs=67.1
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc-------ccCCCCccccEEEeeecccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-------LACARCSNTGSLVLIEPVST 181 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~-------~~C~~C~GSG~v~~~~~~~~ 181 (230)
.+++...+++.| +|+|... +++..+...|..|+|+|. ..|+.|+|+|.+....
T Consensus 114 d~~~~l~~sLee----~~~G~~~------------~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~---- 173 (371)
T PRK14292 114 DLETEARITLEQ----ARAGEEV------------EVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQA---- 173 (371)
T ss_pred CeEEEEeccHHH----HcCCeEE------------EEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEE----
Confidence 455555666666 6777654 566677889999999995 5799999999987542
Q ss_pred ccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEece
Q 026955 182 VNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS 220 (230)
Q Consensus 182 ~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~ 220 (230)
...+|+ ++...+|+.|.|.|+. .|+.|.|.|.+...
T Consensus 174 ~~~~g~---~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~ 212 (371)
T PRK14292 174 RTIFGV---VETQQPCPTCRGEGQIITDPCTVCRGRGRTLKA 212 (371)
T ss_pred eccCce---EEEeeecCCCcccceecCCCCCCCCCceEEeec
Confidence 223343 3457799999999987 89999999998653
No 32
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=9.7e-08 Score=88.93 Aligned_cols=65 Identities=31% Similarity=0.701 Sum_probs=46.8
Q ss_pred cceeecccccccccccCCCCcccc--------EEEee-------------eccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 148 QEQKRCKYCLGTGYLACARCSNTG--------SLVLI-------------EPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 148 ~~~k~C~~C~GtG~~~C~~C~GSG--------~v~~~-------------~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
.-++.|+.|+|.|...|..|+|+| .+.+. +.+..|+|.| ..+|++|+|+|+.
T Consensus 185 ~~v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G-------~~~C~tC~grG~k 257 (406)
T KOG2813|consen 185 MIVTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRG-------IKECHTCKGRGKK 257 (406)
T ss_pred HhhhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCC-------cccCCcccCCCCc
Confidence 345678888888888888888888 22211 1122344444 5689999999999
Q ss_pred eCCCCCCeeEEec
Q 026955 207 MCPTCLCTGMAMA 219 (230)
Q Consensus 207 ~C~tC~GtG~~~~ 219 (230)
+|.+|+|+|.++.
T Consensus 258 ~C~TC~gtgsll~ 270 (406)
T KOG2813|consen 258 PCTTCSGTGSLLN 270 (406)
T ss_pred ccccccCccceee
Confidence 9999999998764
No 33
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.3e-07 Score=88.30 Aligned_cols=70 Identities=23% Similarity=0.482 Sum_probs=57.1
Q ss_pred ceeecceeeccccccccc-----ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee-----eCCCCCC
Q 026955 144 NVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----MCPTCLC 213 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~-----~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv-----~C~tC~G 213 (230)
....+....|+.|+|+|. ..|..|.|+|..... ++.++|+ ..+.+.+|..|.|+|.. .|++|.|
T Consensus 121 kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~----~~~gPg~--~qs~q~~C~~C~G~G~~~~~kd~C~~C~G 194 (337)
T KOG0712|consen 121 KLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRT----RQMGPGM--VQSPQLVCDSCNGSGETISLKDRCKTCSG 194 (337)
T ss_pred ceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEE----Eeccccc--cccceeEeccCCCccccccccccCccccc
Confidence 344556779999999985 479999999998754 5667775 45677899999999997 8999999
Q ss_pred eeEEec
Q 026955 214 TGMAMA 219 (230)
Q Consensus 214 tG~~~~ 219 (230)
++.+..
T Consensus 195 ~~~v~~ 200 (337)
T KOG0712|consen 195 AKVVRE 200 (337)
T ss_pred chhhhh
Confidence 998754
No 34
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.28 E-value=5.4e-07 Score=89.30 Aligned_cols=70 Identities=31% Similarity=0.602 Sum_probs=49.2
Q ss_pred eeccccccccc-----ccCCCCccccEEEeeeccc-cccCCC-CCCCCCCcccCCCCCcCcee----eCCCCCCeeEEec
Q 026955 151 KRCKYCLGTGY-----LACARCSNTGSLVLIEPVS-TVNGGD-QPLSAPKTERCSNCSGSGKV----MCPTCLCTGMAMA 219 (230)
Q Consensus 151 k~C~~C~GtG~-----~~C~~C~GSG~v~~~~~~~-~~~g~G-~~~~~~~~~~Cp~C~G~Gkv----~C~tC~GtG~~~~ 219 (230)
+.|+.|+|+|+ ..|+.|+|+|.....++.. .....+ .-+.+....+|+.|.|+|++ +|+.|.|+|++++
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~ 82 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVLT 82 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEEe
Confidence 58999999997 4799999999984322200 000000 00113345699999999998 7999999999987
Q ss_pred e
Q 026955 220 S 220 (230)
Q Consensus 220 ~ 220 (230)
.
T Consensus 83 c 83 (715)
T COG1107 83 C 83 (715)
T ss_pred e
Confidence 4
No 35
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.1e-06 Score=81.93 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=18.1
Q ss_pred chHHHHHHHHhhhchhhhh-----HHHHH
Q 026955 2 ELQEIHDNIRSRRNKIFLH-----MEEVR 25 (230)
Q Consensus 2 ~~~e~~~ni~~r~~~~~~~-----~e~v~ 25 (230)
.||-.|.|-.|-|||.|.. .||.|
T Consensus 14 ~l~~~q~~s~sar~~~~~~~~ii~~~e~R 42 (406)
T KOG2813|consen 14 DLEKHQKFSTSARSKMQYFDDIIPFFECR 42 (406)
T ss_pred cchhhhhhcccccCcccccCcccchhhhh
Confidence 4677899999999998743 46665
No 36
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.79 E-value=1.8e-05 Score=57.31 Aligned_cols=39 Identities=41% Similarity=0.951 Sum_probs=27.8
Q ss_pred CCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---------------eCCCCCCeeEEe
Q 026955 164 CARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAM 218 (230)
Q Consensus 164 C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---------------~C~tC~GtG~~~ 218 (230)
|+.|+|+|.... ....+|+.|+|+|.+ .|+.|+|+|++.
T Consensus 1 C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 1 CPKCNGTGAKPG----------------KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -CCCTTTSB-ST----------------TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCcccCCC----------------CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence 889999996421 135699999999985 699999999997
No 37
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.69 E-value=2.9e-05 Score=77.29 Aligned_cols=44 Identities=36% Similarity=1.161 Sum_probs=34.3
Q ss_pred eeeccccccccc------------------------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCce
Q 026955 150 QKRCKYCLGTGY------------------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK 205 (230)
Q Consensus 150 ~k~C~~C~GtG~------------------------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gk 205 (230)
.+.|+.|+|+|. .+|+.|.|+|.+... .+|+.|.|+|+
T Consensus 18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~------------------~~c~~c~G~gk 79 (715)
T COG1107 18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVY------------------DTCPECGGTGK 79 (715)
T ss_pred eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEE------------------eecccCCCcee
Confidence 457999999984 389999999988753 36888888887
Q ss_pred e-eCCCC
Q 026955 206 V-MCPTC 211 (230)
Q Consensus 206 v-~C~tC 211 (230)
+ +|..|
T Consensus 80 v~~c~~c 86 (715)
T COG1107 80 VLTCDIC 86 (715)
T ss_pred EEeeccc
Confidence 6 66666
No 38
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2.5e-05 Score=74.08 Aligned_cols=74 Identities=23% Similarity=0.597 Sum_probs=50.5
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeec------ceeeccccccccc-------------ccCCCCcc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQ------EQKRCKYCLGTGY-------------LACARCSN 169 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~------~~k~C~~C~GtG~-------------~~C~~C~G 169 (230)
.+.+...|+..+ +++|.... +...-...|..|... ..+.|+.|+|+|. .+|+.|+|
T Consensus 117 Dl~~~l~isleE----a~~G~~~~-i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G 191 (371)
T COG0484 117 DLRYNLEITLEE----AVFGVKKE-IRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNG 191 (371)
T ss_pred ceEEEEEeEhhh----hccCceee-EecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCcc
Confidence 334444555555 55665432 222233456777655 7889999999994 47999999
Q ss_pred ccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 170 TGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 170 SG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
+|.+. ..+|++|+|.|.+
T Consensus 192 ~G~~i-------------------~~pC~~C~G~G~v 209 (371)
T COG0484 192 TGKII-------------------KDPCGKCKGKGRV 209 (371)
T ss_pred ceeEC-------------------CCCCCCCCCCCeE
Confidence 99875 2489999999985
No 39
>PRK14298 chaperone protein DnaJ; Provisional
Probab=97.08 E-value=0.00032 Score=66.24 Aligned_cols=74 Identities=26% Similarity=0.534 Sum_probs=50.0
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecc------eeeccccccccc---------------ccCCCC
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQE------QKRCKYCLGTGY---------------LACARC 167 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~------~k~C~~C~GtG~---------------~~C~~C 167 (230)
.++++..+++.| +|.|..+- +.....+.|..|.... ...|..|+|+|. .+|+.|
T Consensus 116 di~~~l~vslee----~~~G~~~~-i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 190 (377)
T PRK14298 116 DLRYDLYITLEE----AAFGVRKD-IDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTC 190 (377)
T ss_pred CEEEEEEEEHHH----hhCCeEEE-EEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCC
Confidence 455666667777 78887653 2222234455554433 478999999995 369999
Q ss_pred ccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 168 SNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 168 ~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
+|+|.+. ..+|+.|.|+|.+
T Consensus 191 ~G~G~~~-------------------~~~C~~C~G~g~v 210 (377)
T PRK14298 191 HGRGQVI-------------------ESPCPVCSGTGKV 210 (377)
T ss_pred CCCCccc-------------------CCCCCCCCCccEE
Confidence 9998753 2369999999975
No 40
>PRK14279 chaperone protein DnaJ; Provisional
Probab=97.06 E-value=0.00037 Score=66.10 Aligned_cols=43 Identities=28% Similarity=0.678 Sum_probs=34.6
Q ss_pred cccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee-----------eCCCCCCeeEEec
Q 026955 161 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 219 (230)
Q Consensus 161 ~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv-----------~C~tC~GtG~~~~ 219 (230)
...|+.|+|+|.... ....+|+.|+|+|.+ +|+.|.|+|++..
T Consensus 173 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~ 226 (392)
T PRK14279 173 PAPCTTCHGSGARPG----------------TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE 226 (392)
T ss_pred cccCCCCccccccCC----------------CCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC
Confidence 468999999997531 124689999999975 6999999999864
No 41
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.98 E-value=0.00061 Score=54.87 Aligned_cols=47 Identities=23% Similarity=0.642 Sum_probs=23.5
Q ss_pred eeecccccccccccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
.+.|..|+|+|...-.. + |.......+..|.|.|+ ..|+.|.|+|.+
T Consensus 52 ~~~C~~C~G~G~v~~~~--~-g~~q~~~~C~~C~G~Gk-------~~C~~C~G~G~~ 98 (111)
T PLN03165 52 AQVCRFCVGSGNVTVEL--G-GGEKEVSKCINCDGAGS-------LTCTTCQGSGIQ 98 (111)
T ss_pred CcCCCCCcCcCeEEEEe--C-CcEEEEEECCCCCCcce-------eeCCCCCCCEEE
Confidence 34777777777643221 1 11112223444554442 247777777765
No 42
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.97 E-value=0.00045 Score=64.93 Aligned_cols=74 Identities=20% Similarity=0.573 Sum_probs=48.0
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecc------eeecccccccccc-----------cCCCCcccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQE------QKRCKYCLGTGYL-----------ACARCSNTG 171 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~------~k~C~~C~GtG~~-----------~C~~C~GSG 171 (230)
.++++..+++.| +|.|...- +.....+.|..|++.. ...|..|+|+|.+ +|+.|+|+|
T Consensus 121 di~~~l~vtlee----~~~G~~~~-i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G 195 (365)
T PRK14285 121 DLTYQIEISLED----AYLGYKNN-INITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNG 195 (365)
T ss_pred CEEEEEEEEHHH----hhCCeEEE-EEeeecccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcc
Confidence 455555666666 67776542 1111233455554433 5689999999953 688888888
Q ss_pred EEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 172 SLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 172 ~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
.+. ..+|+.|.|+|.+
T Consensus 196 ~~~-------------------~~~C~~C~G~g~v 211 (365)
T PRK14285 196 KII-------------------SNPCKSCKGKGSL 211 (365)
T ss_pred ccc-------------------CCCCCCCCCCCEE
Confidence 663 2479999999964
No 43
>PRK14280 chaperone protein DnaJ; Provisional
Probab=96.94 E-value=0.00053 Score=64.61 Aligned_cols=74 Identities=26% Similarity=0.566 Sum_probs=48.9
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecc------eeeccccccccc---------------ccCCCC
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQE------QKRCKYCLGTGY---------------LACARC 167 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~------~k~C~~C~GtG~---------------~~C~~C 167 (230)
.++++..+++.| .|+|...- +.....+.|..|.... ...|..|+|+|. .+|+.|
T Consensus 118 di~~~l~vtLee----~~~G~~~~-i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 192 (376)
T PRK14280 118 DLQYTMTLTFEE----AVFGKEKE-IEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHC 192 (376)
T ss_pred CEEEEEEEEHHH----HhCCceeE-EEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCC
Confidence 345555666666 67777642 2222234455554433 568999999985 369999
Q ss_pred ccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 168 SNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 168 ~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
+|+|.+. ..+|+.|.|+|.+
T Consensus 193 ~G~G~~~-------------------~~~C~~C~G~g~v 212 (376)
T PRK14280 193 NGTGQEI-------------------KEKCPTCHGKGKV 212 (376)
T ss_pred CCCCcee-------------------cCCCCCCCCceEE
Confidence 9999764 2369999999975
No 44
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.92 E-value=0.00059 Score=64.31 Aligned_cols=74 Identities=20% Similarity=0.498 Sum_probs=50.2
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecc------eeeccccccccc-----------ccCCCCcccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQE------QKRCKYCLGTGY-----------LACARCSNTG 171 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~------~k~C~~C~GtG~-----------~~C~~C~GSG 171 (230)
.++++..+++.| +|.|...- +.....+.|..|+... ...|..|+|+|. .+|+.|+|+|
T Consensus 125 di~~~l~vtLee----~~~G~~k~-i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G 199 (372)
T PRK14286 125 DLRYNLEVSLED----AALGREYK-IEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKG 199 (372)
T ss_pred CeeEEEEEEHHH----HhCCeeEE-EEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCcee
Confidence 455566667776 78887653 2222234455554433 468999999995 3799999999
Q ss_pred EEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 172 SLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 172 ~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
.+. ..+|+.|.|+|.+
T Consensus 200 ~~~-------------------~~~C~~C~G~g~~ 215 (372)
T PRK14286 200 TVI-------------------SNPCKTCGGQGLQ 215 (372)
T ss_pred eEe-------------------cccCCCCCCCcEE
Confidence 774 2369999999875
No 45
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.92 E-value=0.00058 Score=64.28 Aligned_cols=38 Identities=32% Similarity=0.926 Sum_probs=29.7
Q ss_pred eeecccccccccc-----------cCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~~-----------~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|+.|+|+|.+ +|+.|+|+|.+. ..+|+.|.|+|.+
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 210 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-------------------KNPCKKCHGMGRY 210 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-------------------CCCCCCCCCceEE
Confidence 5689999999863 688888888664 2469999999875
No 46
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.92 E-value=0.00057 Score=64.09 Aligned_cols=38 Identities=34% Similarity=1.023 Sum_probs=29.9
Q ss_pred eeecccccccccc-----------cCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGYL-----------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~~-----------~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|..|+|+|.+ +|+.|+|+|.+. ..+|+.|.|+|.+
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 207 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-------------------KDPCKKCHGQGRV 207 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-------------------CCCCCCCCCCceE
Confidence 4589999999964 599999998763 2369999999875
No 47
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.91 E-value=0.00058 Score=64.39 Aligned_cols=74 Identities=27% Similarity=0.566 Sum_probs=46.9
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeec------ceeecccccccccc---------------cCCCC
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQ------EQKRCKYCLGTGYL---------------ACARC 167 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~------~~k~C~~C~GtG~~---------------~C~~C 167 (230)
.++++..+++.| +|.|...- +.....+.|..|... ....|..|+|+|.+ +|+.|
T Consensus 124 di~~~l~ltlee----~~~G~~~~-i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C 198 (372)
T PRK14296 124 SVSLDIYLTFKE----LLFGVDKI-IELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVC 198 (372)
T ss_pred CeEEEeeccHHH----hhCCeeEE-EEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCc
Confidence 344455555555 56665442 111112334555443 35689999999952 79999
Q ss_pred ccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 168 SNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 168 ~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
+|+|.+. ..+|+.|.|+|.+
T Consensus 199 ~G~G~~~-------------------~~~C~~C~G~g~v 218 (372)
T PRK14296 199 NGAGKII-------------------KNKCKNCKGKGKY 218 (372)
T ss_pred CCcceee-------------------cccccCCCCceEE
Confidence 9999874 2369999999864
No 48
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.90 E-value=0.00062 Score=64.28 Aligned_cols=74 Identities=23% Similarity=0.543 Sum_probs=49.5
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeec------ceeeccccccccc---------------ccCCCC
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQ------EQKRCKYCLGTGY---------------LACARC 167 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~------~~k~C~~C~GtG~---------------~~C~~C 167 (230)
.++++..+++.| +|.|...- +.....+.|..|+.. ....|..|+|+|. .+|+.|
T Consensus 114 d~~~~l~vtLee----~~~G~~~~-i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 188 (378)
T PRK14278 114 DSLLRMRLDLEE----CATGVTKQ-VTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTC 188 (378)
T ss_pred CeEEEEEEEHHH----hcCCeEEE-EEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCC
Confidence 455666677777 77887653 111122334445433 3568999999995 369999
Q ss_pred ccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 168 SNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 168 ~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
+|+|.+. ..+|+.|.|+|.+
T Consensus 189 ~G~G~~~-------------------~~~C~~C~G~g~v 208 (378)
T PRK14278 189 RGVGEVI-------------------PDPCHECAGDGRV 208 (378)
T ss_pred Cccceee-------------------CCCCCCCCCceeE
Confidence 9999764 2369999999975
No 49
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.89 E-value=0.00055 Score=64.82 Aligned_cols=74 Identities=26% Similarity=0.526 Sum_probs=49.0
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceee------cceeeccccccccc-----------ccCCCCcccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQ------QEQKRCKYCLGTGY-----------LACARCSNTG 171 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~------~~~k~C~~C~GtG~-----------~~C~~C~GSG 171 (230)
.++++..+++.| +|.|...- +.....+.|..|.. ...+.|+.|+|+|. .+|+.|+|+|
T Consensus 133 d~~~~l~vslee----~~~G~~~~-i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G 207 (391)
T PRK14284 133 SKKVHITLSFEE----AAKGVEKE-LLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEG 207 (391)
T ss_pred CeEEEEEEEHHH----HhCCeeEE-EEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCC
Confidence 345555666666 67776542 11122344555533 23578999999997 4799999999
Q ss_pred EEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 172 SLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 172 ~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
.+. ..+|+.|.|.|.+
T Consensus 208 ~~~-------------------~~~C~~C~G~g~v 223 (391)
T PRK14284 208 RVI-------------------TDPCSVCRGQGRI 223 (391)
T ss_pred ccc-------------------CCcCCCCCCccee
Confidence 763 2369999999875
No 50
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.79 E-value=0.00077 Score=63.56 Aligned_cols=42 Identities=33% Similarity=0.855 Sum_probs=33.7
Q ss_pred ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee-----------eCCCCCCeeEEec
Q 026955 162 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 219 (230)
Q Consensus 162 ~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv-----------~C~tC~GtG~~~~ 219 (230)
..|..|+|+|.... ....+|+.|.|+|.+ +|+.|.|+|+...
T Consensus 145 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~ 197 (373)
T PRK14301 145 VTCDDCGGSGAAPG----------------TSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT 197 (373)
T ss_pred ccCCCCCCcccCCC----------------CCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC
Confidence 68999999997531 123589999999964 7999999999864
No 51
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.77 E-value=0.00095 Score=62.73 Aligned_cols=42 Identities=29% Similarity=0.649 Sum_probs=33.6
Q ss_pred ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---------------eCCCCCCeeEEec
Q 026955 162 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA 219 (230)
Q Consensus 162 ~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---------------~C~tC~GtG~~~~ 219 (230)
..|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|++..
T Consensus 153 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 209 (369)
T PRK14282 153 ETCPHCGGTGVEPG----------------SGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG 209 (369)
T ss_pred ccCCCCCccCCCCC----------------CCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC
Confidence 68999999996431 124689999999964 5999999999864
No 52
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.77 E-value=0.00093 Score=58.12 Aligned_cols=27 Identities=33% Similarity=0.763 Sum_probs=13.5
Q ss_pred ccCCCCCcCcee-----eCCCCCCeeEEecee
Q 026955 195 ERCSNCSGSGKV-----MCPTCLCTGMAMASE 221 (230)
Q Consensus 195 ~~Cp~C~G~Gkv-----~C~tC~GtG~~~~~e 221 (230)
.+||+|+|+|++ +|++|+|+|++..+.
T Consensus 100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~ 131 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRPTV 131 (186)
T ss_pred CcCCCCCCeeEEecCCCCCCCCCCccEEeeeE
Confidence 345555555543 255555555554443
No 53
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.77 E-value=0.00099 Score=63.21 Aligned_cols=43 Identities=35% Similarity=0.776 Sum_probs=34.3
Q ss_pred cccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee-----------eCCCCCCeeEEec
Q 026955 161 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 219 (230)
Q Consensus 161 ~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv-----------~C~tC~GtG~~~~ 219 (230)
...|..|+|+|.... ....+|+.|.|+|.+ +|+.|.|+|++..
T Consensus 166 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 219 (389)
T PRK14295 166 QAPCPACSGTGAKNG----------------TTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD 219 (389)
T ss_pred cccCCCCcccccCCC----------------CCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec
Confidence 368999999997531 124689999999973 7999999999864
No 54
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.76 E-value=0.00089 Score=63.14 Aligned_cols=42 Identities=26% Similarity=0.773 Sum_probs=33.7
Q ss_pred ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---------------eCCCCCCeeEEec
Q 026955 162 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA 219 (230)
Q Consensus 162 ~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---------------~C~tC~GtG~~~~ 219 (230)
..|..|+|+|... + ....+|+.|.|+|.+ +|+.|.|+|++..
T Consensus 149 ~~C~~C~G~G~~~-----------~-----~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 205 (380)
T PRK14297 149 ENCETCNGTGAKP-----------G-----TSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE 205 (380)
T ss_pred ccCCCcccccccC-----------C-----CcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC
Confidence 6899999999752 1 124689999999864 6999999999864
No 55
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.76 E-value=0.00092 Score=62.22 Aligned_cols=38 Identities=42% Similarity=1.019 Sum_probs=30.1
Q ss_pred eeeccccccccc---------------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~---------------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|..|+|+|. .+|+.|+|+|.+. ..+|+.|.|+|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 212 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-------------------KEPCSTCKGKGRV 212 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-------------------CCCCCCCCCCcEe
Confidence 568999999984 3799999999764 1369999999875
No 56
>PRK14288 chaperone protein DnaJ; Provisional
Probab=96.65 E-value=0.0012 Score=62.18 Aligned_cols=38 Identities=29% Similarity=0.844 Sum_probs=30.1
Q ss_pred eeeccccccccc-----------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~-----------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|..|+|+|. .+|+.|+|+|.+. ..+|+.|.|.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 204 (369)
T PRK14288 156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-------------------KTPCQACKGKTYI 204 (369)
T ss_pred CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-------------------cccCccCCCcceE
Confidence 468999999995 3699999999764 2369999998865
No 57
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0019 Score=59.38 Aligned_cols=55 Identities=25% Similarity=0.633 Sum_probs=44.2
Q ss_pred ecceeecccccccccccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCceeeCCCCC
Q 026955 147 QQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCL 212 (230)
Q Consensus 147 ~~~~k~C~~C~GtG~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv~C~tC~ 212 (230)
......|..|.|.+.++|..|+||=.+... + . . .....+|+.|+=.|.+.|+.|.
T Consensus 226 ~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~-~--~-~-------~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 226 CEGGGVCESCGGARFLPCSNCHGSCKVHEE-E--E-D-------DGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred CCCCCcCCCcCCcceEecCCCCCceeeeee-c--c-C-------CCcEEECcccCCCCceeCCccC
Confidence 344578999999999999999999988752 1 0 1 1246799999999999999995
No 58
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.62 E-value=0.0012 Score=63.44 Aligned_cols=76 Identities=22% Similarity=0.527 Sum_probs=50.2
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecc-----eeeccccccccc---------------ccCCCCc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQE-----QKRCKYCLGTGY---------------LACARCS 168 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~-----~k~C~~C~GtG~---------------~~C~~C~ 168 (230)
.+.++..+++.+ +|+|...- +.....+.|..|++.. ...|..|+|+|. .+|+.|+
T Consensus 125 di~~~l~vtLee----~~~G~~~~-i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~ 199 (421)
T PTZ00037 125 DIVSHLKVTLEQ----IYNGAMRK-LAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCN 199 (421)
T ss_pred CEEEEeeeeHHH----HhCCCceE-EEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCC
Confidence 344555566666 67887543 2222233455554333 468999999994 3799999
Q ss_pred cccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 169 NTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 169 GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
|+|.+.. ...+|+.|+|+|.+
T Consensus 200 G~G~~i~-----------------~~~~C~~C~G~g~v 220 (421)
T PTZ00037 200 GQGKIIP-----------------ESKKCKNCSGKGVK 220 (421)
T ss_pred Ccceecc-----------------ccccCCcCCCccee
Confidence 9998753 13579999999975
No 59
>PRK14289 chaperone protein DnaJ; Provisional
Probab=96.62 E-value=0.0011 Score=62.57 Aligned_cols=38 Identities=32% Similarity=1.005 Sum_probs=29.0
Q ss_pred eeecccccccccc---------------cCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~~---------------~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|+.|+|+|.+ +|+.|+|+|++. ..+|+.|+|+|.+
T Consensus 171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 223 (386)
T PRK14289 171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-------------------KKKCKKCGGEGIV 223 (386)
T ss_pred CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-------------------CcCCCCCCCCcEE
Confidence 4679999998863 688888888663 2369999998864
No 60
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.56 E-value=0.0012 Score=62.10 Aligned_cols=42 Identities=36% Similarity=0.808 Sum_probs=33.3
Q ss_pred ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---------------eCCCCCCeeEEec
Q 026955 162 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA 219 (230)
Q Consensus 162 ~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---------------~C~tC~GtG~~~~ 219 (230)
..|..|+|+|.... ....+|+.|+|+|.+ .|+.|.|+|++..
T Consensus 139 ~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~ 195 (371)
T PRK14287 139 ETCGTCHGSGAKPG----------------TKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK 195 (371)
T ss_pred ccCCCCCCcccCCC----------------CCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc
Confidence 68999999996421 124589999999863 6999999999853
No 61
>PRK14290 chaperone protein DnaJ; Provisional
Probab=96.56 E-value=0.0015 Score=61.31 Aligned_cols=38 Identities=37% Similarity=0.940 Sum_probs=29.2
Q ss_pred eeeccccccccc---------------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~---------------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|+.|+|+|. .+|+.|+|.|++. ..+|+.|.|+|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 217 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-------------------EEKCPRCNGTGTV 217 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-------------------cCCCCCCCCceeE
Confidence 457999999884 4788888888763 2369999998874
No 62
>PRK14277 chaperone protein DnaJ; Provisional
Probab=96.54 E-value=0.0015 Score=61.83 Aligned_cols=38 Identities=37% Similarity=1.049 Sum_probs=29.7
Q ss_pred eeeccccccccc---------------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~---------------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|..|+|+|. .+|..|+|+|.+. ..+|+.|.|+|.+
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 224 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-------------------TDPCNKCGGTGRI 224 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-------------------cCCCCCCCCCcEE
Confidence 468999999985 2699999999764 1369999998875
No 63
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.53 E-value=0.0016 Score=61.20 Aligned_cols=38 Identities=34% Similarity=0.961 Sum_probs=28.9
Q ss_pred eeeccccccccc-----------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~-----------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|..|+|+|. .+|+.|+|+|.+. ..+|+.|.|+|.+
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 209 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-------------------VSPCKTCHGQGRV 209 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-------------------CcCCCCCCCceEe
Confidence 457999999985 3688888888763 2369999998864
No 64
>PRK14281 chaperone protein DnaJ; Provisional
Probab=96.47 E-value=0.0018 Score=61.62 Aligned_cols=38 Identities=37% Similarity=0.933 Sum_probs=29.8
Q ss_pred eeeccccccccc---------------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~---------------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|..|+|+|. .+|+.|+|+|.+. ..+|+.|.|+|.+
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 231 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-------------------KDRCPACYGEGIK 231 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-------------------CCCCCCCCCCccE
Confidence 457999999984 3699999999764 1369999998875
No 65
>PRK14291 chaperone protein DnaJ; Provisional
Probab=96.47 E-value=0.0019 Score=61.09 Aligned_cols=37 Identities=43% Similarity=0.964 Sum_probs=29.2
Q ss_pred eeeccccccccc-----------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~-----------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|+.|+|+|. .+|+.|+|+|.+ ..+|+.|+|.|.+
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~--------------------~~~C~~C~G~g~v 220 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL--------------------REPCSKCNGRGLV 220 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceEE--------------------ccCCCCCCCCceE
Confidence 568999999995 379999999942 1269999999864
No 66
>PRK14293 chaperone protein DnaJ; Provisional
Probab=96.42 E-value=0.002 Score=60.65 Aligned_cols=38 Identities=32% Similarity=0.880 Sum_probs=29.5
Q ss_pred eeeccccccccc---------------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~---------------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|..|+|+|. .+|..|+|+|++. ..+|+.|.|+|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 212 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-------------------EDPCDACGGQGVK 212 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-------------------ccCCCCCCCCccc
Confidence 457999999985 2699999999764 1369999998864
No 67
>PRK14292 chaperone protein DnaJ; Provisional
Probab=96.22 E-value=0.0029 Score=59.40 Aligned_cols=38 Identities=34% Similarity=0.989 Sum_probs=29.1
Q ss_pred eeecccccccccc---------------cCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGYL---------------ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~~---------------~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|..|+|+|.+ +|..|+|+|... ..+|+.|.|+|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-------------------TDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-------------------CCCCCCCCCceEE
Confidence 4679999999853 588888888753 2469999998864
No 68
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.10 E-value=0.0046 Score=58.42 Aligned_cols=73 Identities=22% Similarity=0.498 Sum_probs=41.8
Q ss_pred eeccccccccCCeeeeeecceehhhhhhhhhhccceeecc------eeecccccccccc---------------cCCCCc
Q 026955 110 VHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQE------QKRCKYCLGTGYL---------------ACARCS 168 (230)
Q Consensus 110 ~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~------~k~C~~C~GtG~~---------------~C~~C~ 168 (230)
++++..+++.| +|.|...- +.....+.|..|.+.. ...|+.|+|+|.+ +|+.|+
T Consensus 122 i~~~l~vtLee----~~~G~~~~-i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 196 (380)
T PRK14276 122 LQYRVNLDFEE----AIFGKEKE-VSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCH 196 (380)
T ss_pred EEEEEEEEHHH----hcCCeEEE-EEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCC
Confidence 44455555555 56666432 1112223344454332 4678888888853 466666
Q ss_pred cccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 169 NTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 169 GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
|+|.+. ..+|+.|.|+|.+
T Consensus 197 G~G~~~-------------------~~~C~~C~G~g~~ 215 (380)
T PRK14276 197 GTGKEI-------------------KEPCQTCHGTGHE 215 (380)
T ss_pred CCCccc-------------------cCCCCCCCCceEE
Confidence 666543 2468888888764
No 69
>PRK14283 chaperone protein DnaJ; Provisional
Probab=96.05 E-value=0.004 Score=58.76 Aligned_cols=74 Identities=28% Similarity=0.557 Sum_probs=48.4
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceee------cceeecccccccccc---------------cCCCC
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQ------QEQKRCKYCLGTGYL---------------ACARC 167 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~------~~~k~C~~C~GtG~~---------------~C~~C 167 (230)
.++++..+++.| +|.|...- +.....+.|..|.. .....|..|+|+|.+ +|..|
T Consensus 121 di~~~l~vsLed----~~~G~~~~-i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 195 (378)
T PRK14283 121 DIYTEVEITLEE----AASGVEKD-IKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDC 195 (378)
T ss_pred CeEEEeeeeHHH----HhCCcceE-EEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCC
Confidence 455666677777 77776542 22222234444543 335689999999863 58888
Q ss_pred ccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 168 SNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 168 ~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
+|+|... ..+|..|.|+|.+
T Consensus 196 ~G~G~~~-------------------~~~C~~C~G~g~v 215 (378)
T PRK14283 196 QGEGKIV-------------------EKPCSNCHGKGVV 215 (378)
T ss_pred Cccceec-------------------CCCCCCCCCceee
Confidence 8888763 2369999999875
No 70
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.56 E-value=0.012 Score=49.17 Aligned_cols=50 Identities=24% Similarity=0.601 Sum_probs=37.4
Q ss_pred ceeecccccccccccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCceeeC
Q 026955 149 EQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMC 208 (230)
Q Consensus 149 ~~k~C~~C~GtG~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv~C 208 (230)
....|..|.|.+.++|..|+||=.+...+ +.+ .....+|+.|+=.|.+.|
T Consensus 98 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~------~~~----~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 98 GGGVCEGCGGARFVPCSECNGSCKVFAEN------ATA----AGGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCCCCCCCcCeEECCCCCCcceEEecc------Ccc----cccEEECCCCCccccccC
Confidence 34579999999999999999999886432 100 113468999988888776
No 71
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.52 E-value=0.0079 Score=52.40 Aligned_cols=26 Identities=35% Similarity=0.866 Sum_probs=19.0
Q ss_pred eeecccccccccc-----cCCCCccccEEEe
Q 026955 150 QKRCKYCLGTGYL-----ACARCSNTGSLVL 175 (230)
Q Consensus 150 ~k~C~~C~GtG~~-----~C~~C~GSG~v~~ 175 (230)
...|+.|+|+|.. +|+.|+|+|++..
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 5678888888853 4888888887753
No 72
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.014 Score=53.70 Aligned_cols=66 Identities=26% Similarity=0.524 Sum_probs=48.0
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
.........|..|.|.|. ..|..|.|.|.+.... ..++ ... +|..|.|.|.+ .|..|.|.
T Consensus 158 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~f------~~~-~~~~c~~~~~~~~~~c~~~~g~ 226 (288)
T KOG0715|consen 158 RISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPK----EDPF------ILY-TCSYCLGRGLVLRDNCQACSGA 226 (288)
T ss_pred ceEEEeecccccccCcCcccccccccchhhhCcccccccc----cCCc------cee-ecccccccceeccchHHHhhcc
Confidence 344556679999999995 5899999999664311 1111 112 89999999998 59999999
Q ss_pred eEEece
Q 026955 215 GMAMAS 220 (230)
Q Consensus 215 G~~~~~ 220 (230)
|++...
T Consensus 227 ~~v~~~ 232 (288)
T KOG0715|consen 227 GQVRRA 232 (288)
T ss_pred hhhhhh
Confidence 965543
No 73
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=89.33 E-value=0.38 Score=44.99 Aligned_cols=37 Identities=32% Similarity=0.664 Sum_probs=31.0
Q ss_pred CcccCCCCCcCcee---------------eCCCCCCeeEEeceecCCCCCCC
Q 026955 193 KTERCSNCSGSGKV---------------MCPTCLCTGMAMASEHDPRIDPF 229 (230)
Q Consensus 193 ~~~~Cp~C~G~Gkv---------------~C~tC~GtG~~~~~ehD~~idpf 229 (230)
.+..|+.|+-.+++ .|.+|++.=++.-.+.|+.+||+
T Consensus 225 ~R~~C~~Cg~~~~l~y~~~~~~~~~~r~e~C~~C~~YlK~~~~~~d~~~~p~ 276 (309)
T PRK03564 225 VRVKCSNCEQSGKLHYWSLDSEQAAVKAESCGDCGTYLKILYQEKDPKVEAV 276 (309)
T ss_pred cCccCCCCCCCCceeeeeecCCCcceEeeecccccccceecccccCCCCCcc
Confidence 35689999876543 69999999999889999999997
No 74
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=86.61 E-value=0.68 Score=38.73 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=9.0
Q ss_pred cccCCCCccccEEE
Q 026955 161 YLACARCSNTGSLV 174 (230)
Q Consensus 161 ~~~C~~C~GSG~v~ 174 (230)
...|..|.|.+++.
T Consensus 99 ~~~C~~Cgg~rfv~ 112 (147)
T cd03031 99 GGVCEGCGGARFVP 112 (147)
T ss_pred CCCCCCCCCcCeEE
Confidence 34577777777664
No 75
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=86.47 E-value=0.27 Score=44.67 Aligned_cols=36 Identities=25% Similarity=0.651 Sum_probs=23.5
Q ss_pred cccCCCCCcCcee----------------eCCCCCCeeEEeceecCCCCCCC
Q 026955 194 TERCSNCSGSGKV----------------MCPTCLCTGMAMASEHDPRIDPF 229 (230)
Q Consensus 194 ~~~Cp~C~G~Gkv----------------~C~tC~GtG~~~~~ehD~~idpf 229 (230)
+..||+|+-.... .|.+|+++=++.-.+.|+.+||+
T Consensus 211 R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~YlK~vd~~~~~~~~~~ 262 (290)
T PF04216_consen 211 RIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYLKTVDREKDPELDPV 262 (290)
T ss_dssp TTS-TTT---SS-EEE--------SEEEEEETTTTEEEEEEETTT-TT--HH
T ss_pred CCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccchHHHHhhhhCcccchh
Confidence 4679999876432 79999999888888999999985
No 76
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=84.70 E-value=0.94 Score=46.91 Aligned_cols=50 Identities=28% Similarity=0.651 Sum_probs=36.8
Q ss_pred ecceeeccccccccc-ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee--eCCCCCCe
Q 026955 147 QQEQKRCKYCLGTGY-LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPTCLCT 214 (230)
Q Consensus 147 ~~~~k~C~~C~GtG~-~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv--~C~tC~Gt 214 (230)
+.....|..| |+ ..|++|..+=.... ......|+.|+-...+ .||.|.++
T Consensus 432 ys~~l~C~~C---g~v~~Cp~Cd~~lt~H~---------------~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 432 YAPLLLCRDC---GYIAECPNCDSPLTLHK---------------ATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred ccceeecccC---CCcccCCCCCcceEEec---------------CCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 4556789999 55 47999998754432 1245689999988666 79999877
No 77
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=84.59 E-value=0.77 Score=42.88 Aligned_cols=36 Identities=28% Similarity=0.586 Sum_probs=29.3
Q ss_pred cccCCCCCcCcee-----------------eCCCCCCeeEEeceecCCCCCCC
Q 026955 194 TERCSNCSGSGKV-----------------MCPTCLCTGMAMASEHDPRIDPF 229 (230)
Q Consensus 194 ~~~Cp~C~G~Gkv-----------------~C~tC~GtG~~~~~ehD~~idpf 229 (230)
+..|++|+-..++ .|.+|++.=++.-.+.|+.+||+
T Consensus 224 R~~C~~Cg~~~~l~y~~~e~~~~~~~~r~e~C~~C~~YlK~~~~~~d~~~~~~ 276 (305)
T TIGR01562 224 RVKCSHCEESKHLAYLSLEHDAEKAVLKAETCDSCQGYLKILYQEKDPHADAV 276 (305)
T ss_pred CccCCCCCCCCceeeEeecCCCCCcceEEeeccccccchhhhccccCCccCch
Confidence 5678888765321 69999999888888999999997
No 78
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=84.22 E-value=0.57 Score=44.39 Aligned_cols=78 Identities=21% Similarity=0.503 Sum_probs=46.7
Q ss_pred EEeeeccccccccCCeeeeeecceehhhhhhhhhhcccee-----ecceeeccccccccc----------------ccCC
Q 026955 107 IQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVK-----QQEQKRCKYCLGTGY----------------LACA 165 (230)
Q Consensus 107 ~~~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk-----~~~~k~C~~C~GtG~----------------~~C~ 165 (230)
.-++..+.++++.| +|.|.+.......- .-|..|+ ......|..|.|+|. ..|.
T Consensus 100 g~~~~~~~~~~Le~----~y~G~s~kl~l~~~-~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~ 174 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEE----LYMGKSKKLFLSRN-FICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCD 174 (337)
T ss_pred CCCceEEEEEEHHH----hhcCCccceecccC-ccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEec
Confidence 44566666777777 77776543111100 1122221 222346999999995 3677
Q ss_pred CCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 166 RCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 166 ~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
.|+|+|... .....|+.|.|++.+
T Consensus 175 ~C~G~G~~~-----------------~~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 175 SCNGSGETI-----------------SLKDRCKTCSGAKVV 198 (337)
T ss_pred cCCCccccc-----------------cccccCcccccchhh
Confidence 777776542 235689999999875
No 79
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=83.72 E-value=0.49 Score=42.87 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=22.9
Q ss_pred CcccCCCCCcCceeeCCCCCCeeEEecee
Q 026955 193 KTERCSNCSGSGKVMCPTCLCTGMAMASE 221 (230)
Q Consensus 193 ~~~~Cp~C~G~Gkv~C~tC~GtG~~~~~e 221 (230)
...+|-.-.|++-++||+|+|+|++.+..
T Consensus 26 ~~~py~e~~g~~~vtCPTCqGtGrIP~eq 54 (238)
T PF07092_consen 26 SSFPYVEFTGRDSVTCPTCQGTGRIPREQ 54 (238)
T ss_pred ccCccccccCCCCCcCCCCcCCccCCccc
Confidence 44577778888888999999999986543
No 80
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=79.23 E-value=0.65 Score=46.89 Aligned_cols=26 Identities=27% Similarity=0.852 Sum_probs=19.6
Q ss_pred cceeecccccccccccCCCCccccEEE
Q 026955 148 QEQKRCKYCLGTGYLACARCSNTGSLV 174 (230)
Q Consensus 148 ~~~k~C~~C~GtG~~~C~~C~GSG~v~ 174 (230)
+.++.|..|.+.|. .|..|+.+..+.
T Consensus 499 ~HV~~C~lC~~~gf-iCe~Cq~~~iiy 524 (580)
T KOG1829|consen 499 KHVKECDLCTGKGF-ICELCQHNDIIY 524 (580)
T ss_pred hhhhhchhhccCee-eeeeccCCCccc
Confidence 34567999999997 688887766554
No 81
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.99 E-value=1.7 Score=40.36 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=6.5
Q ss_pred eCCCCCCeeEEe
Q 026955 207 MCPTCLCTGMAM 218 (230)
Q Consensus 207 ~C~tC~GtG~~~ 218 (230)
+|+.|+-.|.++
T Consensus 264 rC~~CNENGLvr 275 (281)
T KOG2824|consen 264 RCLECNENGLVR 275 (281)
T ss_pred ECcccCCCCcee
Confidence 466665555543
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.98 E-value=2 Score=42.27 Aligned_cols=52 Identities=21% Similarity=0.477 Sum_probs=35.1
Q ss_pred eecceeecccccccccccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee--eCCCCCCe
Q 026955 146 KQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPTCLCT 214 (230)
Q Consensus 146 k~~~~k~C~~C~GtG~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv--~C~tC~Gt 214 (230)
-......|..|.-. ..|+.|.++=..... ...-.|+.|+-+-.. .||+|.+.
T Consensus 209 Gya~~~~C~~Cg~~--~~C~~C~~~l~~h~~---------------~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 209 GYSKNLLCRSCGYI--LCCPNCDVSLTYHKK---------------EGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred cCCCeeEhhhCcCc--cCCCCCCCceEEecC---------------CCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 34455689999333 469999886544321 135689999887665 79999764
No 83
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.51 E-value=1.7 Score=46.03 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=6.8
Q ss_pred cCCCCccccEEE
Q 026955 163 ACARCSNTGSLV 174 (230)
Q Consensus 163 ~C~~C~GSG~v~ 174 (230)
.|+.|.|.|++.
T Consensus 738 ~C~~C~G~G~~~ 749 (924)
T TIGR00630 738 RCEACQGDGVIK 749 (924)
T ss_pred CCCCCccceEEE
Confidence 366666666554
No 84
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=77.18 E-value=1.1 Score=40.69 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=20.1
Q ss_pred eecccccccccccCCCCccccEEEe
Q 026955 151 KRCKYCLGTGYLACARCSNTGSLVL 175 (230)
Q Consensus 151 k~C~~C~GtG~~~C~~C~GSG~v~~ 175 (230)
..|..-.|.+..+|+.|+|+|++..
T Consensus 28 ~py~e~~g~~~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 28 FPYVEFTGRDSVTCPTCQGTGRIPR 52 (238)
T ss_pred CccccccCCCCCcCCCCcCCccCCc
Confidence 3566667888899999999999853
No 85
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=77.01 E-value=2 Score=27.82 Aligned_cols=13 Identities=15% Similarity=0.567 Sum_probs=8.5
Q ss_pred ccCCCCccccEEE
Q 026955 162 LACARCSNTGSLV 174 (230)
Q Consensus 162 ~~C~~C~GSG~v~ 174 (230)
+.|+.|+..-.+.
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 4677777766554
No 86
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.48 E-value=1.5 Score=46.47 Aligned_cols=24 Identities=29% Similarity=0.764 Sum_probs=20.5
Q ss_pred ccCCCCCcCcee------------eCCCCCCeeEEe
Q 026955 195 ERCSNCSGSGKV------------MCPTCLCTGMAM 218 (230)
Q Consensus 195 ~~Cp~C~G~Gkv------------~C~tC~GtG~~~ 218 (230)
-+||.|.|.|.+ +|+.|+|+.+..
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~ 772 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNR 772 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeCh
Confidence 479999999986 699999987654
No 87
>PRK14873 primosome assembly protein PriA; Provisional
Probab=73.71 E-value=3 Score=42.69 Aligned_cols=50 Identities=24% Similarity=0.505 Sum_probs=33.1
Q ss_pred ecceeeccccccccc-ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCce-eeCCCCCCe
Q 026955 147 QQEQKRCKYCLGTGY-LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK-VMCPTCLCT 214 (230)
Q Consensus 147 ~~~~k~C~~C~GtG~-~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gk-v~C~tC~Gt 214 (230)
+.....|..| |+ ..|++|++.=..... ...-.|+.|+-.-. ..|++|.++
T Consensus 380 yap~l~C~~C---g~~~~C~~C~~~L~~h~~---------------~~~l~Ch~CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 380 YVPSLACARC---RTPARCRHCTGPLGLPSA---------------GGTPRCRWCGRAAPDWRCPRCGSD 431 (665)
T ss_pred CCCeeEhhhC---cCeeECCCCCCceeEecC---------------CCeeECCCCcCCCcCccCCCCcCC
Confidence 4456679999 44 579999986555321 12457999986532 279999765
No 88
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.68 E-value=8.6 Score=36.12 Aligned_cols=36 Identities=31% Similarity=0.488 Sum_probs=23.9
Q ss_pred cccCCCCCCCCCcCCCCCC-----------CChhHHHHHHHHHHHHH
Q 026955 43 EEQDNELPSFPSFIPFLPP-----------LSAANLKVYYATCFSLI 78 (230)
Q Consensus 43 ~~~~~~~~~~~s~~~~~~~-----------~~~~~~~~~~~~~~~~~ 78 (230)
..+++.-|-.||.||+.|= ==+++.|..|.+|...+
T Consensus 96 ~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~~ 142 (313)
T KOG3088|consen 96 VIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGLV 142 (313)
T ss_pred cccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHH
Confidence 4456666779999999992 22577775555555443
No 89
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=71.44 E-value=3.2 Score=44.21 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=7.5
Q ss_pred cCCCCccccEEE
Q 026955 163 ACARCSNTGSLV 174 (230)
Q Consensus 163 ~C~~C~GSG~v~ 174 (230)
.|+.|.|.|.+.
T Consensus 740 ~C~~C~G~G~~~ 751 (943)
T PRK00349 740 RCEACQGDGVIK 751 (943)
T ss_pred CCCcccccceEE
Confidence 366666666665
No 90
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=70.64 E-value=2.3 Score=39.14 Aligned_cols=43 Identities=35% Similarity=0.808 Sum_probs=33.8
Q ss_pred ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee-----------eCCCCCCeeEEece
Q 026955 162 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMAS 220 (230)
Q Consensus 162 ~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv-----------~C~tC~GtG~~~~~ 220 (230)
..|..|.|.|... | .....|..|.|.|++ +|..|+|.|.+...
T Consensus 165 ~~~~t~~~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~ 218 (288)
T KOG0715|consen 165 SDCETCFGSGAEE-----------G-----AKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRD 218 (288)
T ss_pred cccccccCcCccc-----------c-----cccccchhhhCcccccccccCCcceeecccccccceeccc
Confidence 5899999999322 1 246789999999943 49999999998754
No 91
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=70.45 E-value=2.3 Score=45.24 Aligned_cols=24 Identities=29% Similarity=0.761 Sum_probs=20.4
Q ss_pred ccCCCCCcCcee------------eCCCCCCeeEEe
Q 026955 195 ERCSNCSGSGKV------------MCPTCLCTGMAM 218 (230)
Q Consensus 195 ~~Cp~C~G~Gkv------------~C~tC~GtG~~~ 218 (230)
-+||.|.|.|.+ +|++|+|+....
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~ 774 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNR 774 (943)
T ss_pred CCCCcccccceEEEEeccCCCccccCccccCccccc
Confidence 469999999986 699999987654
No 92
>PRK05580 primosome assembly protein PriA; Validated
Probab=69.11 E-value=4.1 Score=41.56 Aligned_cols=51 Identities=24% Similarity=0.515 Sum_probs=33.3
Q ss_pred ecceeecccccccccccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee--eCCCCCCe
Q 026955 147 QQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPTCLCT 214 (230)
Q Consensus 147 ~~~~k~C~~C~GtG~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv--~C~tC~Gt 214 (230)
......|..|.-. ..|+.|.++=.... ......|+.|+-+-.. .||.|.+.
T Consensus 378 y~~~~~C~~Cg~~--~~C~~C~~~l~~h~---------------~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 378 YAPFLLCRDCGWV--AECPHCDASLTLHR---------------FQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred CCCceEhhhCcCc--cCCCCCCCceeEEC---------------CCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 3445678888332 46999998433321 1234579999887654 79999765
No 93
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=67.96 E-value=5.3 Score=25.34 Aligned_cols=12 Identities=17% Similarity=0.686 Sum_probs=7.5
Q ss_pred ccCCCCccccEE
Q 026955 162 LACARCSNTGSL 173 (230)
Q Consensus 162 ~~C~~C~GSG~v 173 (230)
..|+.|+..=.+
T Consensus 3 ~~CP~C~~~~~v 14 (38)
T TIGR02098 3 IQCPNCKTSFRV 14 (38)
T ss_pred EECCCCCCEEEe
Confidence 457777765444
No 94
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=65.04 E-value=5.1 Score=45.57 Aligned_cols=32 Identities=22% Similarity=0.485 Sum_probs=18.4
Q ss_pred cCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCc
Q 026955 163 ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSG 204 (230)
Q Consensus 163 ~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~G 204 (230)
+|+.|.|.|++...- ..+. ....+|+.|+|+.
T Consensus 1609 rC~~C~G~G~i~i~m---~fl~-------dv~~~C~~C~G~R 1640 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDR---AFYA-------LEKRPCPTCSGFR 1640 (1809)
T ss_pred CCCCCccCceEEEec---ccCC-------CcccCCCCCCCcC
Confidence 488888888775311 1111 2345777777764
No 95
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=64.63 E-value=5.4 Score=42.30 Aligned_cols=13 Identities=23% Similarity=0.818 Sum_probs=8.2
Q ss_pred cCCCCccccEEEe
Q 026955 163 ACARCSNTGSLVL 175 (230)
Q Consensus 163 ~C~~C~GSG~v~~ 175 (230)
+|..|+|.|.+..
T Consensus 732 RCe~C~GdG~ikI 744 (935)
T COG0178 732 RCEACQGDGVIKI 744 (935)
T ss_pred CCccccCCceEEE
Confidence 5666666666643
No 96
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=64.19 E-value=7.4 Score=30.81 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=22.5
Q ss_pred CcccCCCCC----------cCceeeCCCCCCeeEEeceecCCCCCC
Q 026955 193 KTERCSNCS----------GSGKVMCPTCLCTGMAMASEHDPRIDP 228 (230)
Q Consensus 193 ~~~~Cp~C~----------G~Gkv~C~tC~GtG~~~~~ehD~~idp 228 (230)
+...||+|+ |.+.+.|++|.-.--...+..|-.||=
T Consensus 20 t~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~y~~~~V~~l~epIDV 65 (99)
T PRK14892 20 KIFECPRCGKVSISVKIKKNIAIITCGNCGLYTEFEVPSVYDEVDV 65 (99)
T ss_pred cEeECCCCCCeEeeeecCCCcceEECCCCCCccCEECCccccchhh
Confidence 345677776 345668999965444455666666663
No 97
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=62.09 E-value=5.7 Score=28.89 Aligned_cols=33 Identities=30% Similarity=0.681 Sum_probs=22.6
Q ss_pred ccCCCCCcCcee-eCCCCCCeeEEeceecCCCCCCCC
Q 026955 195 ERCSNCSGSGKV-MCPTCLCTGMAMASEHDPRIDPFD 230 (230)
Q Consensus 195 ~~Cp~C~G~Gkv-~C~tC~GtG~~~~~ehD~~idpf~ 230 (230)
..|+.|+--... +|+.|.| ....-|-||++|=|
T Consensus 6 rkC~~cg~YTLke~Cp~CG~---~t~~~~PprFSPeD 39 (59)
T COG2260 6 RKCPKCGRYTLKEKCPVCGG---DTKVPHPPRFSPED 39 (59)
T ss_pred hcCcCCCceeecccCCCCCC---ccccCCCCCCCccc
Confidence 468888765444 8999955 34456788887744
No 98
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=61.24 E-value=4.3 Score=46.08 Aligned_cols=10 Identities=20% Similarity=0.600 Sum_probs=4.7
Q ss_pred cCCCCccccE
Q 026955 163 ACARCSNTGS 172 (230)
Q Consensus 163 ~C~~C~GSG~ 172 (230)
.|+.|+|+.+
T Consensus 742 ~c~~C~GkRy 751 (1809)
T PRK00635 742 PCPSCLGKRF 751 (1809)
T ss_pred ECCccCCccc
Confidence 4455554444
No 99
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=58.89 E-value=6.1 Score=28.30 Aligned_cols=33 Identities=30% Similarity=0.715 Sum_probs=24.4
Q ss_pred ccCCCCCcCcee-eCCCCCCeeEEeceecCCCCCCCC
Q 026955 195 ERCSNCSGSGKV-MCPTCLCTGMAMASEHDPRIDPFD 230 (230)
Q Consensus 195 ~~Cp~C~G~Gkv-~C~tC~GtG~~~~~ehD~~idpf~ 230 (230)
.+|+.|+-.... .|+.|.+ ...+-|-+|+.|=|
T Consensus 6 r~C~~CgvYTLk~~CP~CG~---~t~~~~P~rfSp~D 39 (56)
T PRK13130 6 RKCPKCGVYTLKEICPVCGG---KTKNPHPPRFSPED 39 (56)
T ss_pred eECCCCCCEEccccCcCCCC---CCCCCCCCCCCCCC
Confidence 579999876543 7999954 46678888888854
No 100
>PRK04023 DNA polymerase II large subunit; Validated
Probab=58.83 E-value=6.4 Score=42.44 Aligned_cols=46 Identities=24% Similarity=0.533 Sum_probs=29.6
Q ss_pred cceeeccccccc-ccccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCce-eeCCCCCC
Q 026955 148 QEQKRCKYCLGT-GYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK-VMCPTCLC 213 (230)
Q Consensus 148 ~~~k~C~~C~Gt-G~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gk-v~C~tC~G 213 (230)
.....|+.|.-. -+..|+.|+.. + . ....||.|.-... -.|++|.-
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~---T--e---------------~i~fCP~CG~~~~~y~CPKCG~ 671 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTH---T--E---------------PVYRCPRCGIEVEEDECEKCGR 671 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCC---C--C---------------cceeCccccCcCCCCcCCCCCC
Confidence 345689999444 45789999876 1 1 1236888865443 37999954
No 101
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=56.05 E-value=6.6 Score=34.20 Aligned_cols=50 Identities=26% Similarity=0.734 Sum_probs=34.8
Q ss_pred ceeecccccccccccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCce------eeCCCCC
Q 026955 149 EQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK------VMCPTCL 212 (230)
Q Consensus 149 ~~k~C~~C~GtG~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gk------v~C~tC~ 212 (230)
.+..|..|.+.|. .|..|+.+..+. |. ......+|+.|+.-=. ..||.|.
T Consensus 141 HV~~C~lC~~kGf-iCe~C~~~~~If---PF----------~~~~~~~C~~C~~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 141 HVYSCELCQQKGF-ICEICNSDDIIF---PF----------QIDTTVRCPKCKSVFHKSCFRKKSCPKCA 196 (202)
T ss_pred HHHHhHHHHhCCC-CCccCCCCCCCC---CC----------CCCCeeeCCcCccccchhhcCCCCCCCcH
Confidence 4559999999996 899999886553 11 1235678998887422 3688874
No 102
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=55.60 E-value=8 Score=26.62 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=9.6
Q ss_pred ccCCCCccccEE
Q 026955 162 LACARCSNTGSL 173 (230)
Q Consensus 162 ~~C~~C~GSG~v 173 (230)
++|+.|.|....
T Consensus 2 kPCPfCGg~~~~ 13 (53)
T TIGR03655 2 KPCPFCGGADVY 13 (53)
T ss_pred CCCCCCCCccee
Confidence 579999988873
No 103
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=55.50 E-value=5.1 Score=31.26 Aligned_cols=39 Identities=23% Similarity=0.546 Sum_probs=23.5
Q ss_pred ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 162 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 162 ~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
..|..|+|.|.+..... +....|. .-...|++|+|.|..
T Consensus 6 ~~c~~c~g~g~al~~~~--s~~~~G~----pvfk~c~rcgg~G~s 44 (95)
T PF03589_consen 6 DSCRRCAGDGAALDMKQ--SKAQFGV----PVFKDCERCGGRGYS 44 (95)
T ss_pred CCcCccCCcceeccHHH--hHhccCC----chhhhhhhhcCCCCC
Confidence 46888888886653221 2223353 234678888888753
No 104
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=55.23 E-value=9 Score=42.22 Aligned_cols=44 Identities=27% Similarity=0.727 Sum_probs=28.4
Q ss_pred eeecccccccc-cccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcC------ceeeCCCCCC
Q 026955 150 QKRCKYCLGTG-YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGS------GKVMCPTCLC 213 (230)
Q Consensus 150 ~k~C~~C~GtG-~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~------Gkv~C~tC~G 213 (230)
...|+.|.... ...|+.|...=.. ...||+|+.. +...|+.|.-
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~--------------------vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEP--------------------VYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCC--------------------ceeCccCCCccCCCccccccCCCCCC
Confidence 57899996643 3689988775211 1268888773 2337888854
No 105
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=50.43 E-value=9.5 Score=40.54 Aligned_cols=23 Identities=30% Similarity=0.824 Sum_probs=15.7
Q ss_pred ccCCCCCcCcee------------eCCCCCCeeEE
Q 026955 195 ERCSNCSGSGKV------------MCPTCLCTGMA 217 (230)
Q Consensus 195 ~~Cp~C~G~Gkv------------~C~tC~GtG~~ 217 (230)
-+|..|+|.|.+ +|..|+|+-+.
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn 765 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN 765 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence 367777777764 57777776543
No 106
>PF14353 CpXC: CpXC protein
Probab=49.71 E-value=20 Score=28.49 Aligned_cols=14 Identities=14% Similarity=0.612 Sum_probs=11.0
Q ss_pred ccCCCCccccEEEe
Q 026955 162 LACARCSNTGSLVL 175 (230)
Q Consensus 162 ~~C~~C~GSG~v~~ 175 (230)
++|+.|+..+....
T Consensus 2 itCP~C~~~~~~~v 15 (128)
T PF14353_consen 2 ITCPHCGHEFEFEV 15 (128)
T ss_pred cCCCCCCCeeEEEE
Confidence 57899988888754
No 107
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=47.20 E-value=2.8 Score=39.18 Aligned_cols=35 Identities=31% Similarity=0.671 Sum_probs=30.4
Q ss_pred cccCCCCCcCcee----------------eCCCCCCeeEEeceecCCCCCC
Q 026955 194 TERCSNCSGSGKV----------------MCPTCLCTGMAMASEHDPRIDP 228 (230)
Q Consensus 194 ~~~Cp~C~G~Gkv----------------~C~tC~GtG~~~~~ehD~~idp 228 (230)
+.+|.+|+.+++. +|++|++.=++.-.|.||-.||
T Consensus 225 R~KC~nC~~t~~l~y~sl~s~E~A~vkAEtC~~C~sYlKilyqekdp~vea 275 (308)
T COG3058 225 RVKCSNCEQSKKLHYWSLESSELAAVKAETCGDCNSYLKILYQEKDPKVEA 275 (308)
T ss_pred HHHhccccccCCccceeccchhhhHhhhhcCCcHHHHHHHHHHhcCCcccc
Confidence 4579999998774 7999999999999999999887
No 108
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=46.01 E-value=13 Score=28.13 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=11.8
Q ss_pred cCceeeCCCCCCeeEEeceecCCCCC
Q 026955 202 GSGKVMCPTCLCTGMAMASEHDPRID 227 (230)
Q Consensus 202 G~Gkv~C~tC~GtG~~~~~ehD~~id 227 (230)
|.|.+.|..|.-.=.......|-.||
T Consensus 43 ~~~~~~C~~Cg~~~~~~i~~L~epiD 68 (81)
T PF05129_consen 43 GIGILSCRVCGESFQTKINPLSEPID 68 (81)
T ss_dssp TEEEEEESSS--EEEEE--SS--TTH
T ss_pred CEEEEEecCCCCeEEEccCccCcccc
Confidence 55777999994433333333343333
No 109
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=44.45 E-value=15 Score=30.89 Aligned_cols=10 Identities=20% Similarity=0.750 Sum_probs=6.2
Q ss_pred ccCCCCCcCc
Q 026955 195 ERCSNCSGSG 204 (230)
Q Consensus 195 ~~Cp~C~G~G 204 (230)
.+||.|++..
T Consensus 131 ~~Cp~C~~~~ 140 (146)
T PF07295_consen 131 PPCPKCGHTE 140 (146)
T ss_pred CCCCCCCCCe
Confidence 4677777653
No 110
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=43.83 E-value=15 Score=24.07 Aligned_cols=9 Identities=22% Similarity=0.881 Sum_probs=4.9
Q ss_pred cCCCCcccc
Q 026955 163 ACARCSNTG 171 (230)
Q Consensus 163 ~C~~C~GSG 171 (230)
.|+.|+.+-
T Consensus 2 ~Cp~Cg~~~ 10 (43)
T PF08271_consen 2 KCPNCGSKE 10 (43)
T ss_dssp SBTTTSSSE
T ss_pred CCcCCcCCc
Confidence 356665544
No 111
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=42.81 E-value=17 Score=37.27 Aligned_cols=18 Identities=22% Similarity=0.610 Sum_probs=11.3
Q ss_pred ecccccc---cccccCCCCcc
Q 026955 152 RCKYCLG---TGYLACARCSN 169 (230)
Q Consensus 152 ~C~~C~G---tG~~~C~~C~G 169 (230)
.|+.|+. .|.+-|+.|+.
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~ 23 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGT 23 (645)
T ss_pred cCCCCCCcCCCCCccccccCC
Confidence 5777743 35567777743
No 112
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=42.69 E-value=10 Score=30.24 Aligned_cols=9 Identities=33% Similarity=1.173 Sum_probs=5.5
Q ss_pred cCCCCCcCc
Q 026955 196 RCSNCSGSG 204 (230)
Q Consensus 196 ~Cp~C~G~G 204 (230)
.||+|++..
T Consensus 88 ~CP~Cgs~~ 96 (113)
T PRK12380 88 QCPHCHGER 96 (113)
T ss_pred cCcCCCCCC
Confidence 477777643
No 113
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=42.00 E-value=13 Score=24.77 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=7.2
Q ss_pred ccCCCCccccEEE
Q 026955 162 LACARCSNTGSLV 174 (230)
Q Consensus 162 ~~C~~C~GSG~v~ 174 (230)
.+|+.|.|+..-.
T Consensus 4 ~pCP~CGG~DrFr 16 (40)
T PF08273_consen 4 GPCPICGGKDRFR 16 (40)
T ss_dssp E--TTTT-TTTEE
T ss_pred CCCCCCcCccccc
Confidence 4788888877655
No 114
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=41.25 E-value=18 Score=26.69 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=11.4
Q ss_pred eeCCCCCCeeEEeceec
Q 026955 206 VMCPTCLCTGMAMASEH 222 (230)
Q Consensus 206 v~C~tC~GtG~~~~~eh 222 (230)
+.|..|...|-...+|+
T Consensus 28 v~C~~CgA~~~~~~te~ 44 (64)
T PRK09710 28 AKCNGCESRTGYGGSEK 44 (64)
T ss_pred EEcCCCCcCcccccCHH
Confidence 46777877776666554
No 115
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=41.24 E-value=19 Score=33.53 Aligned_cols=9 Identities=78% Similarity=1.239 Sum_probs=6.2
Q ss_pred eecCCCCCC
Q 026955 220 SEHDPRIDP 228 (230)
Q Consensus 220 ~ehD~~idp 228 (230)
.+|=|||||
T Consensus 137 ~~~fPR~dP 145 (279)
T COG2816 137 HEHFPRIDP 145 (279)
T ss_pred CccCCCCCC
Confidence 466677777
No 116
>PRK00420 hypothetical protein; Validated
Probab=40.54 E-value=19 Score=29.11 Aligned_cols=20 Identities=30% Similarity=0.740 Sum_probs=13.6
Q ss_pred cccCCCCCc------CceeeCCCCCC
Q 026955 194 TERCSNCSG------SGKVMCPTCLC 213 (230)
Q Consensus 194 ~~~Cp~C~G------~Gkv~C~tC~G 213 (230)
...||.|+. .|+..||+|.-
T Consensus 23 ~~~CP~Cg~pLf~lk~g~~~Cp~Cg~ 48 (112)
T PRK00420 23 SKHCPVCGLPLFELKDGEVVCPVHGK 48 (112)
T ss_pred cCCCCCCCCcceecCCCceECCCCCC
Confidence 357888875 36667888843
No 117
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=39.29 E-value=37 Score=28.55 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=32.0
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhhhhcCCCcccceeEEeeeccc
Q 026955 55 FIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPM 114 (230)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~~lg~~g~~~~~~~~~~~lp~ 114 (230)
-+.|||+||++.|..--.+... -| |+|.+|-.-- +.++..|--.-.||+
T Consensus 7 TfSyLPpLTdeqI~kQI~Y~i~--~G-------W~p~iEft~~--~~~~~~YW~MWkLPM 55 (138)
T CHL00130 7 TFSFLPDLTDQQIEKQIQYAIS--KG-------WALNVEWTDD--PHPRNSYWELWGLPL 55 (138)
T ss_pred eeccCCCCCHHHHHHHHHHHHh--cC-------CeEEEEecCC--CCcCccEEeeeCCcc
Confidence 3679999999999854433222 23 8999987643 344445566666765
No 118
>PRK00295 hypothetical protein; Provisional
Probab=38.59 E-value=80 Score=23.03 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhchhhhhHHHHHHHHHHHhhhhhccCCCccccCCCCCCC
Q 026955 4 QEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSF 52 (230)
Q Consensus 4 ~e~~~ni~~r~~~~~~~~e~v~~lr~~~~~~~~~~~~~~~~~~~~~~~~ 52 (230)
+++.+=|..-...|-.|-.+++.|+ .||++.+.+.....++..+|-|
T Consensus 22 e~Ln~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~~~~~~~~~e~~PPHY 68 (68)
T PRK00295 22 QALNDVLVEQQRVIERLQLQMAALI--KRQEEMVGQFGSFEEEAPPPHY 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCCCCCcCCC
Confidence 4455555555566767777788874 3455443333333334444443
No 119
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=38.37 E-value=22 Score=22.89 Aligned_cols=12 Identities=17% Similarity=0.722 Sum_probs=7.2
Q ss_pred ccCCCCccccEE
Q 026955 162 LACARCSNTGSL 173 (230)
Q Consensus 162 ~~C~~C~GSG~v 173 (230)
+.|+.|+..=.+
T Consensus 3 i~Cp~C~~~y~i 14 (36)
T PF13717_consen 3 ITCPNCQAKYEI 14 (36)
T ss_pred EECCCCCCEEeC
Confidence 457777665544
No 120
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=36.91 E-value=11 Score=29.80 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=4.6
Q ss_pred ccCCCCcccc
Q 026955 162 LACARCSNTG 171 (230)
Q Consensus 162 ~~C~~C~GSG 171 (230)
..|..|+-..
T Consensus 71 ~~C~~Cg~~~ 80 (113)
T PF01155_consen 71 ARCRDCGHEF 80 (113)
T ss_dssp EEETTTS-EE
T ss_pred EECCCCCCEE
Confidence 3555555443
No 121
>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=36.42 E-value=27 Score=36.18 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=18.8
Q ss_pred cccceeEEeeeccccc--------cccCCeeeeeeccee
Q 026955 101 TSYADFIQSVHLPMQL--------SQVDPIVASFSGGAV 131 (230)
Q Consensus 101 ~~~~~~~~~~~lp~ql--------s~~d~I~asf~Gg~v 131 (230)
..|+ +-|+|||... ..-++....+.||.+
T Consensus 570 ~~YY--TNS~h~pv~~~i~~~eki~~e~~~~~~~~GG~I 606 (711)
T PRK09263 570 KGYY--TNSFHYDVRKKVNPFEKLDFEKPYPPLASGGFI 606 (711)
T ss_pred CCcc--CCCEecCCCCCCCHHHHHHhhcccccccCCeEE
Confidence 3455 8999999853 222333567888876
No 122
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=36.30 E-value=12 Score=39.78 Aligned_cols=45 Identities=24% Similarity=0.609 Sum_probs=0.0
Q ss_pred eeecccccccc-cccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCce-eeCCCCCCe
Q 026955 150 QKRCKYCLGTG-YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGK-VMCPTCLCT 214 (230)
Q Consensus 150 ~k~C~~C~GtG-~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gk-v~C~tC~Gt 214 (230)
...|+.|.-.+ +..|+.|++.=.. .-.||.|.-.-. -.|++|.-.
T Consensus 655 ~r~Cp~Cg~~t~~~~Cp~CG~~T~~--------------------~~~Cp~C~~~~~~~~C~~C~~~ 701 (900)
T PF03833_consen 655 RRRCPKCGKETFYNRCPECGSHTEP--------------------VYVCPDCGIEVEEDECPKCGRE 701 (900)
T ss_dssp -------------------------------------------------------------------
T ss_pred cccCcccCCcchhhcCcccCCcccc--------------------ceeccccccccCcccccccccc
Confidence 45788884444 4688888653221 236888877533 278888544
No 123
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=36.22 E-value=34 Score=28.53 Aligned_cols=19 Identities=37% Similarity=1.146 Sum_probs=15.1
Q ss_pred cccCCCCCc-----CceeeCCCCC
Q 026955 194 TERCSNCSG-----SGKVMCPTCL 212 (230)
Q Consensus 194 ~~~Cp~C~G-----~Gkv~C~tC~ 212 (230)
...||.|+- .|.+.||.|.
T Consensus 28 ~~hCp~Cg~PLF~KdG~v~CPvC~ 51 (131)
T COG1645 28 AKHCPKCGTPLFRKDGEVFCPVCG 51 (131)
T ss_pred HhhCcccCCcceeeCCeEECCCCC
Confidence 457999976 4889999994
No 124
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=36.02 E-value=25 Score=22.84 Aligned_cols=9 Identities=33% Similarity=1.162 Sum_probs=5.9
Q ss_pred cccCCCCCc
Q 026955 194 TERCSNCSG 202 (230)
Q Consensus 194 ~~~Cp~C~G 202 (230)
...|++|+|
T Consensus 19 id~C~~C~G 27 (41)
T PF13453_consen 19 IDVCPSCGG 27 (41)
T ss_pred EEECCCCCe
Confidence 356777776
No 125
>PF14369 zf-RING_3: zinc-finger
Probab=35.92 E-value=27 Score=22.40 Aligned_cols=7 Identities=43% Similarity=1.402 Sum_probs=4.7
Q ss_pred cCCCCCc
Q 026955 196 RCSNCSG 202 (230)
Q Consensus 196 ~Cp~C~G 202 (230)
.||.|+|
T Consensus 23 ~CP~C~~ 29 (35)
T PF14369_consen 23 ACPRCHG 29 (35)
T ss_pred CCcCCCC
Confidence 4777765
No 126
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=35.76 E-value=26 Score=22.99 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=8.2
Q ss_pred ccCCCCccccEEE
Q 026955 162 LACARCSNTGSLV 174 (230)
Q Consensus 162 ~~C~~C~GSG~v~ 174 (230)
.+|+.|.|+..-.
T Consensus 4 ~pCP~CGG~DrFr 16 (37)
T smart00778 4 GPCPNCGGSDRFR 16 (37)
T ss_pred cCCCCCCCccccc
Confidence 4677777766543
No 127
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=35.54 E-value=16 Score=35.45 Aligned_cols=14 Identities=43% Similarity=0.892 Sum_probs=8.8
Q ss_pred CcccCCCCCcCcee
Q 026955 193 KTERCSNCSGSGKV 206 (230)
Q Consensus 193 ~~~~Cp~C~G~Gkv 206 (230)
...+||+|+|+|++
T Consensus 389 ~~~~Cp~C~G~G~v 402 (414)
T TIGR00757 389 LGTVCPHCSGTGIV 402 (414)
T ss_pred hcCCCCCCcCeeEE
Confidence 34567777777665
No 128
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=35.30 E-value=16 Score=29.20 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=6.4
Q ss_pred ccCCCCCcCc
Q 026955 195 ERCSNCSGSG 204 (230)
Q Consensus 195 ~~Cp~C~G~G 204 (230)
..||+|++..
T Consensus 87 ~~CP~Cgs~~ 96 (115)
T TIGR00100 87 YRCPKCHGIM 96 (115)
T ss_pred ccCcCCcCCC
Confidence 4577777654
No 129
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=35.17 E-value=23 Score=33.77 Aligned_cols=23 Identities=39% Similarity=0.827 Sum_probs=19.2
Q ss_pred eeecccccccccccCCCCccccEEEe
Q 026955 150 QKRCKYCLGTGYLACARCSNTGSLVL 175 (230)
Q Consensus 150 ~k~C~~C~GtG~~~C~~C~GSG~v~~ 175 (230)
...|..|.|.| |..|.++||+..
T Consensus 260 dv~~~~~~g~g---c~~ck~~~WiEi 282 (339)
T PRK00488 260 DVSCFKCGGKG---CRVCKGTGWLEI 282 (339)
T ss_pred EEEEeccCCCc---ccccCCCCceEE
Confidence 45699999876 999999999864
No 130
>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase. This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer.
Probab=34.91 E-value=29 Score=34.94 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=20.2
Q ss_pred cCCCcccceeEEeeecccccc--------ccCCeeeeeeccee
Q 026955 97 GIGGTSYADFIQSVHLPMQLS--------QVDPIVASFSGGAV 131 (230)
Q Consensus 97 g~~g~~~~~~~~~~~lp~qls--------~~d~I~asf~Gg~v 131 (230)
|+.+..|+ +-|+|+|.... .-++....+.||.+
T Consensus 448 gv~d~~yY--TNS~hipv~~~~~~~eki~~e~~f~~~~~GG~i 488 (579)
T TIGR02487 448 GVTDKPYY--TNSFHVPVYEDVNLGEKIDIEAPFHPLTNGGHI 488 (579)
T ss_pred CCCCCCcC--CCCEeeCCCCCCCHHHHHHhhcchhcccCCceE
Confidence 34444455 78999887422 22244567888875
No 131
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=34.58 E-value=27 Score=30.52 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=22.1
Q ss_pred cCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCc
Q 026955 163 ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSG 204 (230)
Q Consensus 163 ~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~G 204 (230)
.|+.|++.|...... ...-+.+....-....|++|+=+-
T Consensus 2 ~Cp~C~~~~~~~~~~---~~~IP~F~evii~sf~C~~CGyr~ 40 (192)
T TIGR00310 2 DCPSCGGECETVMKT---VNDIPYFGEVLETSTICEHCGYRS 40 (192)
T ss_pred cCCCCCCCCEEEEEE---EcCCCCcceEEEEEEECCCCCCcc
Confidence 699999888875321 110111111233456899998763
No 132
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=34.48 E-value=32 Score=28.91 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=10.9
Q ss_pred eCCCCCCeeEEec
Q 026955 207 MCPTCLCTGMAMA 219 (230)
Q Consensus 207 ~C~tC~GtG~~~~ 219 (230)
+||.|+++.+.+.
T Consensus 132 ~Cp~C~~~~F~R~ 144 (146)
T PF07295_consen 132 PCPKCGHTEFTRQ 144 (146)
T ss_pred CCCCCCCCeeeeC
Confidence 8999999887764
No 133
>PRK11032 hypothetical protein; Provisional
Probab=34.29 E-value=27 Score=29.93 Aligned_cols=9 Identities=22% Similarity=0.778 Sum_probs=4.8
Q ss_pred ccCCCCCcC
Q 026955 195 ERCSNCSGS 203 (230)
Q Consensus 195 ~~Cp~C~G~ 203 (230)
.+||.|++.
T Consensus 143 ~pCp~C~~~ 151 (160)
T PRK11032 143 PLCPKCGHD 151 (160)
T ss_pred CCCCCCCCC
Confidence 355555554
No 134
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=32.87 E-value=31 Score=20.76 Aligned_cols=7 Identities=43% Similarity=1.085 Sum_probs=3.9
Q ss_pred ccCCCCC
Q 026955 195 ERCSNCS 201 (230)
Q Consensus 195 ~~Cp~C~ 201 (230)
-+||+|+
T Consensus 17 f~CPnCG 23 (24)
T PF07754_consen 17 FPCPNCG 23 (24)
T ss_pred EeCCCCC
Confidence 3566663
No 135
>PHA03029 hypothetical protein; Provisional
Probab=32.86 E-value=29 Score=26.74 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=14.1
Q ss_pred HHHHHHHhhhchhhhhHH
Q 026955 5 EIHDNIRSRRNKIFLHME 22 (230)
Q Consensus 5 e~~~ni~~r~~~~~~~~e 22 (230)
.|.|||+|||.-....|.
T Consensus 40 ai~qnirsrrkg~ywfln 57 (92)
T PHA03029 40 AIDQNIRSRRKGLYWFLN 57 (92)
T ss_pred HHHHHHHHHhhhHHHHHH
Confidence 578999999987766554
No 136
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=31.67 E-value=9.8 Score=33.67 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=23.1
Q ss_pred CCCCCC-CChhHHHHHHHHHHHHHHHHhhhccccccch
Q 026955 56 IPFLPP-LSAANLKVYYATCFSLIAGVILFGGLLAPSL 92 (230)
Q Consensus 56 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~ 92 (230)
||.||- +.+... .++.++++....+.+||.+.+-+.
T Consensus 153 iPllpy~~~~~~~-~~~~s~~~~~~aL~~~G~~~a~~~ 189 (218)
T cd02432 153 LPLLAILLAPAAW-KVPVTIIATLLALALTGYVSARLG 189 (218)
T ss_pred HHHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 365553 333333 366777778888888998877553
No 137
>PHA01745 hypothetical protein
Probab=31.59 E-value=33 Score=32.20 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=26.3
Q ss_pred CcCCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccch
Q 026955 54 SFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSL 92 (230)
Q Consensus 54 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~ 92 (230)
++||-+-.-....+..+..+|.- .+=.|.|||+|+|++
T Consensus 102 ~vIPViH~Y~~e~l~~~ldfysq-y~d~iAfGG~Vp~s~ 139 (306)
T PHA01745 102 RIIPVIHLYPVREVDEAIDFYSQ-YTDYIAFGGIVASSK 139 (306)
T ss_pred ceeeEEeecCHHHHHHHHHHHHh-hhhhhhccccccHHh
Confidence 56777666667777655554444 344889999999984
No 138
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=31.50 E-value=73 Score=26.99 Aligned_cols=60 Identities=15% Similarity=0.290 Sum_probs=32.0
Q ss_pred cCCCCcccc-EEEeeeccccccCCCCCCCCCCcccCCCCCcCceeeCCCCCCeeEEeceecCCCCCCCC
Q 026955 163 ACARCSNTG-SLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD 230 (230)
Q Consensus 163 ~C~~C~GSG-~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv~C~tC~GtG~~~~~ehD~~idpf~ 230 (230)
.||.|...- .+... ....+|.. ......|+.|+.+=...= += ..-++...++|=++.||+
T Consensus 2 ~cp~c~~~~~~~~~s----~~~~~~~~--~~~~~~c~~c~~~f~~~e-~~-~~~~i~VIKRDG~~v~Fd 62 (154)
T PRK00464 2 RCPFCGHPDTRVIDS----RPAEDGNA--IRRRRECLACGKRFTTFE-RV-ELVPLLVIKKDGRREPFD 62 (154)
T ss_pred cCCCCCCCCCEeEec----cccCCCCc--eeeeeeccccCCcceEeE-ec-cCcccEEEecCCcCCCcC
Confidence 588887766 33321 23334431 222367999988632100 00 001345678888888886
No 139
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=30.89 E-value=38 Score=23.89 Aligned_cols=20 Identities=30% Similarity=0.893 Sum_probs=14.7
Q ss_pred CcccCCCCCcCcee-------eCCCCC
Q 026955 193 KTERCSNCSGSGKV-------MCPTCL 212 (230)
Q Consensus 193 ~~~~Cp~C~G~Gkv-------~C~tC~ 212 (230)
+.++||.|+...+. .|+.|.
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg 53 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCG 53 (69)
T ss_pred CccCccCcccccccccccceEEcCCCC
Confidence 56789999876443 788884
No 140
>PRK00736 hypothetical protein; Provisional
Probab=30.81 E-value=1.3e+02 Score=21.90 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=21.0
Q ss_pred hHHHHHHHHhhhchhhhhHHHHHHHHHHHhhhhhc
Q 026955 3 LQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 37 (230)
Q Consensus 3 ~~e~~~ni~~r~~~~~~~~e~v~~lr~~~~~~~~~ 37 (230)
++++.+=|..-...|=.|.++++.|+= ||++.+
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L~~--rl~~~~ 53 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDALTE--RFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence 355556666666677778888888854 444443
No 141
>PRK05978 hypothetical protein; Provisional
Probab=30.38 E-value=26 Score=29.68 Aligned_cols=16 Identities=44% Similarity=1.265 Sum_probs=10.2
Q ss_pred ccCCCCCcCcee---------eCCCC
Q 026955 195 ERCSNCSGSGKV---------MCPTC 211 (230)
Q Consensus 195 ~~Cp~C~G~Gkv---------~C~tC 211 (230)
.+||+|+- |+. .|++|
T Consensus 34 grCP~CG~-G~LF~g~Lkv~~~C~~C 58 (148)
T PRK05978 34 GRCPACGE-GKLFRAFLKPVDHCAAC 58 (148)
T ss_pred CcCCCCCC-CcccccccccCCCcccc
Confidence 46777754 443 57777
No 142
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=30.32 E-value=1.3e+02 Score=27.79 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=6.5
Q ss_pred HHHHHHHHhhhccc
Q 026955 74 CFSLIAGVILFGGL 87 (230)
Q Consensus 74 ~~~~~~~~~~~g~~ 87 (230)
-.++++|++++|++
T Consensus 337 ~~~~~~gl~l~~~~ 350 (362)
T TIGR01010 337 LATFVILLILYGVL 350 (362)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555443
No 143
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=30.20 E-value=33 Score=24.66 Aligned_cols=13 Identities=31% Similarity=0.861 Sum_probs=7.1
Q ss_pred cccCCCCccccEE
Q 026955 161 YLACARCSNTGSL 173 (230)
Q Consensus 161 ~~~C~~C~GSG~v 173 (230)
++.|+.|++.-++
T Consensus 4 Wi~CP~CgnKTR~ 16 (55)
T PF14205_consen 4 WILCPICGNKTRL 16 (55)
T ss_pred EEECCCCCCccce
Confidence 4556666655444
No 144
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=29.44 E-value=24 Score=34.26 Aligned_cols=15 Identities=47% Similarity=0.988 Sum_probs=12.9
Q ss_pred eCCCCCCeeEEecee
Q 026955 207 MCPTCLCTGMAMASE 221 (230)
Q Consensus 207 ~C~tC~GtG~~~~~e 221 (230)
.||+|+|+|.+...+
T Consensus 392 ~Cp~C~G~G~v~s~~ 406 (414)
T TIGR00757 392 VCPHCSGTGIVKTSE 406 (414)
T ss_pred CCCCCcCeeEEccHH
Confidence 799999999998654
No 145
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=29.14 E-value=37 Score=28.80 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=20.2
Q ss_pred cCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCc
Q 026955 163 ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSG 204 (230)
Q Consensus 163 ~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~G 204 (230)
.|+.|+..|...... .+-+-++...-....|++|+=+-
T Consensus 2 ~Cp~C~~~~~~~~~~----~~IP~F~evii~sf~C~~CGyk~ 39 (160)
T smart00709 2 DCPSCGGNGTTRMLL----TSIPYFREVIIMSFECEHCGYRN 39 (160)
T ss_pred cCCCCCCCCEEEEEE----ecCCCcceEEEEEEECCCCCCcc
Confidence 588888888753211 11111111223456799998763
No 146
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=28.93 E-value=54 Score=21.78 Aligned_cols=9 Identities=22% Similarity=0.778 Sum_probs=5.2
Q ss_pred ccCCCCCcC
Q 026955 195 ERCSNCSGS 203 (230)
Q Consensus 195 ~~Cp~C~G~ 203 (230)
..||+|+..
T Consensus 19 ~~CP~Cg~~ 27 (46)
T PF12760_consen 19 FVCPHCGST 27 (46)
T ss_pred CCCCCCCCe
Confidence 346666654
No 147
>PRK02119 hypothetical protein; Provisional
Probab=28.47 E-value=1.5e+02 Score=21.99 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhhchhhhhHHHHHHHHHHHhhhhhc
Q 026955 3 LQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 37 (230)
Q Consensus 3 ~~e~~~ni~~r~~~~~~~~e~v~~lr~~~~~~~~~ 37 (230)
++++.+=|..-+..|=.|-.++|.|+ +||+..+
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~--~rl~~~~ 57 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMA--NKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc
Confidence 34555556666666777777788884 3555543
No 148
>PRK00846 hypothetical protein; Provisional
Probab=28.16 E-value=1.5e+02 Score=22.53 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=26.4
Q ss_pred HHHHHHHHhhhchhhhhHHHHHHHHHHHhhhhhcc-CCCccccCCCCCCC
Q 026955 4 QEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL-GISKEEQDNELPSF 52 (230)
Q Consensus 4 ~e~~~ni~~r~~~~~~~~e~v~~lr~~~~~~~~~~-~~~~~~~~~~~~~~ 52 (230)
+++.+-|..-...|=.|-+.+++|+- |||..+. ...+..++.++|-|
T Consensus 30 e~LN~~v~~qq~~I~~L~~ql~~L~~--rL~~~~~s~~~~~~dE~PPPHY 77 (77)
T PRK00846 30 TELSEALADARLTGARNAELIRHLLE--DLGKVRSTLFADPADEPPPPHY 77 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccccCCCCCCCCCcCCC
Confidence 44555555555566666677787764 6777653 23334444455544
No 149
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=27.42 E-value=37 Score=37.69 Aligned_cols=18 Identities=33% Similarity=1.049 Sum_probs=14.6
Q ss_pred cCCCCCcCce--eeCCCCCC
Q 026955 196 RCSNCSGSGK--VMCPTCLC 213 (230)
Q Consensus 196 ~Cp~C~G~Gk--v~C~tC~G 213 (230)
.||.|+..-. ..|++|..
T Consensus 681 fCP~CGs~te~vy~CPsCGa 700 (1337)
T PRK14714 681 RCPDCGTHTEPVYVCPDCGA 700 (1337)
T ss_pred cCcccCCcCCCceeCccCCC
Confidence 7999999753 37999965
No 150
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=27.16 E-value=56 Score=20.77 Aligned_cols=13 Identities=23% Similarity=0.769 Sum_probs=7.9
Q ss_pred ccCCCCccccEEE
Q 026955 162 LACARCSNTGSLV 174 (230)
Q Consensus 162 ~~C~~C~GSG~v~ 174 (230)
..|..|++.|.+.
T Consensus 4 ~~C~~C~~~~i~~ 16 (33)
T PF08792_consen 4 KKCSKCGGNGIVN 16 (33)
T ss_pred eEcCCCCCCeEEE
Confidence 3566677777553
No 151
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.68 E-value=65 Score=28.44 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=41.2
Q ss_pred HHHHHHHhhhchhhhhHHHHHHHHHHHhhhhhccCCCccccCCCCCCCCCcCCCCCCCChhHHHHHHHHHHHHHHHHhhh
Q 026955 5 EIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILF 84 (230)
Q Consensus 5 e~~~ni~~r~~~~~~~~e~v~~lr~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (230)
|+++-+.++.+.|-=|-+|-++|+=|......+.. .-+.+++- . .+++...|-+|++.|+++=++
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~--~l~~~~~~-----~--------~~~~~~~wf~~Gg~v~~~Gll 186 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD--AANLQLDD-----K--------QRTIIMQWFMYGGGVAGIGLL 186 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-----H--------HHHHHHHHHHHchHHHHHHHH
Confidence 34444444445555588888888766544333221 10111111 1 455565666677778887777
Q ss_pred ccccccch
Q 026955 85 GGLLAPSL 92 (230)
Q Consensus 85 g~~~ap~~ 92 (230)
=|||-|-|
T Consensus 187 lGlilp~l 194 (206)
T PRK10884 187 LGLLLPHL 194 (206)
T ss_pred HHHHhccc
Confidence 88888876
No 152
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.54 E-value=35 Score=33.64 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=16.2
Q ss_pred hhccceeecceeecccccc-------cccccCCCCc
Q 026955 140 VEVNNVKQQEQKRCKYCLG-------TGYLACARCS 168 (230)
Q Consensus 140 ve~n~vk~~~~k~C~~C~G-------tG~~~C~~C~ 168 (230)
+-|.+|. ....|++|.+ .+...|..|+
T Consensus 214 ~~C~~Cg--~~~~C~~C~~~l~~h~~~~~l~Ch~Cg 247 (505)
T TIGR00595 214 LLCRSCG--YILCCPNCDVSLTYHKKEGKLRCHYCG 247 (505)
T ss_pred eEhhhCc--CccCCCCCCCceEEecCCCeEEcCCCc
Confidence 3455553 3457888874 3346777775
No 153
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=26.09 E-value=66 Score=25.46 Aligned_cols=32 Identities=31% Similarity=0.546 Sum_probs=21.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhhhh
Q 026955 56 IPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKL 96 (230)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~~l 96 (230)
+.|||+||++.|.+--.+... -| ++|.+|---
T Consensus 6 ~sylp~lt~~~i~~QI~yll~--qG-------~~~~lE~ad 37 (99)
T cd03527 6 FSYLPPLTDEQIAKQIDYIIS--NG-------WAPCLEFTE 37 (99)
T ss_pred cccCCCCCHHHHHHHHHHHHh--CC-------CEEEEEccc
Confidence 579999999999854333222 22 778887543
No 154
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=25.95 E-value=41 Score=20.33 Aligned_cols=7 Identities=29% Similarity=1.189 Sum_probs=3.4
Q ss_pred cCCCCCc
Q 026955 196 RCSNCSG 202 (230)
Q Consensus 196 ~Cp~C~G 202 (230)
+||.|+.
T Consensus 2 ~CP~C~~ 8 (26)
T PF10571_consen 2 TCPECGA 8 (26)
T ss_pred cCCCCcC
Confidence 3555544
No 155
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=25.86 E-value=38 Score=24.65 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhhcccc
Q 026955 72 ATCFSLIAGVILFGGLL 88 (230)
Q Consensus 72 ~~~~~~~~~~~~~g~~~ 88 (230)
+-+.++|+.||+||=|+
T Consensus 10 triVLLISfiIlfgRl~ 26 (59)
T PF11119_consen 10 TRIVLLISFIILFGRLI 26 (59)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45778899999999654
No 156
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=25.56 E-value=55 Score=28.59 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=24.3
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhhhhcC
Q 026955 55 FIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGI 98 (230)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~~lg~ 98 (230)
-+.|||+||++.|..--.+.. --| |+|-||-..--
T Consensus 69 TfSYLPpLtdeqI~kQVeYli-------~~G--W~pclEf~~~~ 103 (176)
T PLN02289 69 TLSYLPDLTDEELAKEVDYLL-------RNK--WVPCLEFELEH 103 (176)
T ss_pred eeecCCCCCHHHHHHHHHHHH-------hCC--CeeeeeeccCC
Confidence 357999999999985433321 122 89999987654
No 157
>PF15616 TerY-C: TerY-C metal binding domain
Probab=25.53 E-value=91 Score=25.94 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=10.6
Q ss_pred cCceeeCCCCCCeeEEece
Q 026955 202 GSGKVMCPTCLCTGMAMAS 220 (230)
Q Consensus 202 G~Gkv~C~tC~GtG~~~~~ 220 (230)
|.+.++||-|.-+|.....
T Consensus 102 g~~~~~CPwCg~~g~~~~~ 120 (131)
T PF15616_consen 102 GEGEVTCPWCGNEGSFGAG 120 (131)
T ss_pred CCCCEECCCCCCeeeeccc
Confidence 3445666666666655443
No 158
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=25.46 E-value=57 Score=21.55 Aligned_cols=7 Identities=57% Similarity=1.445 Sum_probs=3.5
Q ss_pred cCCCCcc
Q 026955 163 ACARCSN 169 (230)
Q Consensus 163 ~C~~C~G 169 (230)
.|+.|+.
T Consensus 5 ~C~~CG~ 11 (46)
T PRK00398 5 KCARCGR 11 (46)
T ss_pred ECCCCCC
Confidence 4555544
No 159
>PF02792 Mago_nashi: Mago nashi protein; InterPro: IPR004023 This family was originally identified in drosophila and called mago nashi, it is a strict maternal effect, grandchildless-like, gene []. The human homologue has been shown to interact with an RNA binding protein, ribonucleoprotein rbm8 (Q9Y5S9 from SWISSPROT) []. An RNAi knockout of the Caenorhabditis elegans homologue causes masculinization of the germ line (Mog phenotype) hermaphrodites, suggesting it is involved in hermaphrodite germ-line sex determination [] but the protein is also found in hermaphrodites and other organisms without a sexual differentiation.; GO: 0005634 nucleus; PDB: 2XB2_Y 2J0S_C 3EX7_A 2J0Q_F 1P27_C 2HYI_A 2X1G_B 1HL6_B 1RK8_B 1OO0_A ....
Probab=25.36 E-value=72 Score=27.05 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHhhhhhccCCCccccCCCCCCC
Q 026955 19 LHMEEVRRLRIQQRIKNAELGISKEEQDNELPSF 52 (230)
Q Consensus 19 ~~~e~v~~lr~~~~~~~~~~~~~~~~~~~~~~~~ 52 (230)
.+|+|+||+=.++.|- .++|..|+.|+.
T Consensus 52 ~vl~E~krII~~SeI~------kEdD~~WP~pd~ 79 (143)
T PF02792_consen 52 AVLEELKRIIEDSEIM------KEDDSKWPEPDR 79 (143)
T ss_dssp HHHHHHHHHHHHHTGG------G--STTS--SBT
T ss_pred HHHHHHHHHHHHhhcc------ccccccCCCCCC
Confidence 5899999987666552 256778888876
No 160
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=24.98 E-value=43 Score=18.44 Aligned_cols=10 Identities=40% Similarity=1.142 Sum_probs=4.7
Q ss_pred CCCCCcCcee
Q 026955 197 CSNCSGSGKV 206 (230)
Q Consensus 197 Cp~C~G~Gkv 206 (230)
|.+|+..|.+
T Consensus 3 C~~C~~~GH~ 12 (18)
T PF00098_consen 3 CFNCGEPGHI 12 (18)
T ss_dssp CTTTSCSSSC
T ss_pred CcCCCCcCcc
Confidence 4445444443
No 161
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.85 E-value=1.9e+02 Score=21.30 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=21.9
Q ss_pred hHHHHHHHHhhhchhhhhHHHHHHHHHHHhhhhhcc
Q 026955 3 LQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAEL 38 (230)
Q Consensus 3 ~~e~~~ni~~r~~~~~~~~e~v~~lr~~~~~~~~~~ 38 (230)
++++.+=|..-+..|--|-.++|.|+- ||++.+.
T Consensus 24 Ie~Ln~~v~~Qq~~I~~L~~~l~~L~~--rl~~~~~ 57 (72)
T PRK02793 24 IEELNVTVTAHEMEMAKLRDHLRLLTE--KLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhcc
Confidence 345556666666777778888888843 5555443
No 162
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=24.74 E-value=69 Score=22.65 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=10.3
Q ss_pred eCCCCCCeeEEeceecCCCCC
Q 026955 207 MCPTCLCTGMAMASEHDPRID 227 (230)
Q Consensus 207 ~C~tC~GtG~~~~~ehD~~id 227 (230)
.|+.|. .-....+...++++
T Consensus 24 ~Cp~CG-aeleVv~~~p~~L~ 43 (54)
T TIGR01206 24 ICDECG-AELEVVSLDPLRLE 43 (54)
T ss_pred eCCCCC-CEEEEEeCCCCEEE
Confidence 788884 44444444334443
No 163
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=24.40 E-value=62 Score=34.53 Aligned_cols=138 Identities=20% Similarity=0.335 Sum_probs=76.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhccccccchhhhhcCCCcccceeEEeeeccccccccCCeeeeeecceehhhhhhh-h
Q 026955 61 PLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALM-I 139 (230)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~~lg~~g~~~~~~~~~~~lp~qls~~d~I~asf~Gg~vGv~s~l~-v 139 (230)
++++.|.+-.=++-|.+.|-==+|-|-|--.|--- +-=.-|+||+-+.++-.-|++. +-.--+||.-|..+ -
T Consensus 1010 ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Ta--l~L~DYEd~lpP~eiySllALa-----aca~raFGtCSKAfmk 1082 (1189)
T KOG2041|consen 1010 RILENTWRGAEAYHFMILAQRQLFEGRVKDALQTA--LILSDYEDFLPPAEIYSLLALA-----ACAVRAFGTCSKAFMK 1082 (1189)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHH--hhhccHhhcCCHHHHHHHHHHH-----HhhhhhhhhhHHHHHH
Confidence 35566777555666666666556666655444221 2224599999887776655554 23334444311111 1
Q ss_pred hhc----------------------c--ceeecceeecccccccc---cccCCCCccccEEEeeeccccccCCCCCCCCC
Q 026955 140 VEV----------------------N--NVKQQEQKRCKYCLGTG---YLACARCSNTGSLVLIEPVSTVNGGDQPLSAP 192 (230)
Q Consensus 140 ve~----------------------n--~vk~~~~k~C~~C~GtG---~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~ 192 (230)
+|. | .-.......|..|.+.= ...|+.|++.=- .|.++|++....
T Consensus 1083 Le~~e~l~~a~kq~ye~La~~iFsk~~p~d~~~~~vdc~~cg~~i~~~~~~c~ec~~kfP--------~CiasG~pIt~~ 1154 (1189)
T KOG2041|consen 1083 LEAFEELDDAEKQEYENLAFRIFSKNPPVDPNSAKVDCSVCGAKIDPYDLQCSECQTKFP--------VCIASGRPITDN 1154 (1189)
T ss_pred HHhhhhCCHHHHHHHHHHHHHHhccCCCCCCCccceeeeecCCcCCccCCCChhhcCcCc--------eeeccCCccccc
Confidence 110 0 11234467899998743 378999988432 455566654433
Q ss_pred CcccCCCCCcCce---e----eCCCCCC
Q 026955 193 KTERCSNCSGSGK---V----MCPTCLC 213 (230)
Q Consensus 193 ~~~~Cp~C~G~Gk---v----~C~tC~G 213 (230)
.---||.|.-... + .||-|+.
T Consensus 1155 ~fWlC~~CkH~a~~~EIs~y~~CPLCHs 1182 (1189)
T KOG2041|consen 1155 IFWLCPRCKHRAHQHEISKYNCCPLCHS 1182 (1189)
T ss_pred eEEEccccccccccccccccccCccccC
Confidence 3345888876432 2 6999974
No 164
>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=24.32 E-value=77 Score=32.46 Aligned_cols=72 Identities=25% Similarity=0.561 Sum_probs=0.0
Q ss_pred cCCCcccceeEEeeeccc--------cccccCCeeeeeeccee-------------hhhhhhhhhhccc-----eeecce
Q 026955 97 GIGGTSYADFIQSVHLPM--------QLSQVDPIVASFSGGAV-------------GVISALMIVEVNN-----VKQQEQ 150 (230)
Q Consensus 97 g~~g~~~~~~~~~~~lp~--------qls~~d~I~asf~Gg~v-------------Gv~s~l~vve~n~-----vk~~~~ 150 (230)
|.....|+ +-|+|+|. .+...++....+.||.+ .++..+.-.-.+. --....
T Consensus 482 gv~d~~YY--TNS~hipV~~~~~~~eki~~e~~fh~~~~GG~I~hv~l~~~~~~n~~Al~~lvk~~~~~~i~Y~sin~~~ 559 (618)
T PRK14704 482 GITNHNYY--TNSFHIPVYYNIQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAEHGVGYGSINHPV 559 (618)
T ss_pred CCCCCCcc--cCceeccCCCCCCHHHHHHhhcccccccCCeEEEEEEECCccCCCHHHHHHHHHHHHhcCCceEEeCCCC
Q ss_pred eecccccccccc--cCCCCccc
Q 026955 151 KRCKYCLGTGYL--ACARCSNT 170 (230)
Q Consensus 151 k~C~~C~GtG~~--~C~~C~GS 170 (230)
..|..|.-+|.. .||.|+..
T Consensus 560 ~~C~~CGy~g~~~~~CP~CG~~ 581 (618)
T PRK14704 560 DRCKCCSYHGVIGNECPSCGNE 581 (618)
T ss_pred eecCCCCCCCCcCccCcCCCCC
No 165
>PRK14873 primosome assembly protein PriA; Provisional
Probab=24.13 E-value=50 Score=34.03 Aligned_cols=29 Identities=24% Similarity=0.677 Sum_probs=17.7
Q ss_pred hhhccceeecceeeccccccc-------ccccCCCCcc
Q 026955 139 IVEVNNVKQQEQKRCKYCLGT-------GYLACARCSN 169 (230)
Q Consensus 139 vve~n~vk~~~~k~C~~C~Gt-------G~~~C~~C~G 169 (230)
++-|.+|. ....|++|.+. +...|..|+-
T Consensus 383 ~l~C~~Cg--~~~~C~~C~~~L~~h~~~~~l~Ch~CG~ 418 (665)
T PRK14873 383 SLACARCR--TPARCRHCTGPLGLPSAGGTPRCRWCGR 418 (665)
T ss_pred eeEhhhCc--CeeECCCCCCceeEecCCCeeECCCCcC
Confidence 34455553 35689999763 3456777753
No 166
>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only]
Probab=23.65 E-value=55 Score=32.06 Aligned_cols=73 Identities=23% Similarity=0.297 Sum_probs=53.3
Q ss_pred hhhhHHHHHHHHHHHhhhhhccCCCccccCCCCCCCCCcCCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhhhh
Q 026955 17 IFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKL 96 (230)
Q Consensus 17 ~~~~~e~v~~lr~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~~l 96 (230)
..++|||.+.. +.|+|+ ..++|-+.|.=|.+=.+.++|..++-......-+=-.++|-+|-=..--||
T Consensus 120 d~vi~eea~Ef--~~r~~~----------n~~lP~~tscCPgwV~~~Ekt~P~Ll~~LS~vkSPQq~~g~~iK~~~~~~~ 187 (411)
T COG4624 120 DMVIMEEAAEF--LERVKK----------NDDLPLFTSCCPGWVNYAEKTYPNLLPNLSSVKSPQQALGSLIKTYYAEKL 187 (411)
T ss_pred chHHHHHHHHH--HHHHhc----------CCCCceeeccChHHHHHHHHhhHHHHhhccccCCHHHHHHHHHHHHhhhhc
Confidence 34789999998 778776 267898999999888888888888777666666666666666555554555
Q ss_pred cCCCc
Q 026955 97 GIGGT 101 (230)
Q Consensus 97 g~~g~ 101 (230)
|..-.
T Consensus 188 ~~~~e 192 (411)
T COG4624 188 GIAPE 192 (411)
T ss_pred CCCcc
Confidence 55443
No 167
>PRK04406 hypothetical protein; Provisional
Probab=23.31 E-value=2e+02 Score=21.40 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhchhhhhHHHHHHHHHHHhhhhhc
Q 026955 4 QEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE 37 (230)
Q Consensus 4 ~e~~~ni~~r~~~~~~~~e~v~~lr~~~~~~~~~ 37 (230)
+++.+=|..-...|-.|-.++|.|+ +||++.+
T Consensus 28 e~LN~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~ 59 (75)
T PRK04406 28 EELNDALSQQQLLITKMQDQMKYVV--GKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc
Confidence 4455555555566666777788773 4566654
No 168
>PRK11712 ribonuclease G; Provisional
Probab=23.12 E-value=37 Score=33.80 Aligned_cols=13 Identities=38% Similarity=1.007 Sum_probs=0.0
Q ss_pred cccCCCCCcCcee
Q 026955 194 TERCSNCSGSGKV 206 (230)
Q Consensus 194 ~~~Cp~C~G~Gkv 206 (230)
..+||.|+|+|++
T Consensus 402 ~~~Cp~C~G~G~v 414 (489)
T PRK11712 402 CGECPTCHGRGTV 414 (489)
T ss_pred cCCCCCCCCCCCc
No 169
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=23.05 E-value=47 Score=26.22 Aligned_cols=13 Identities=46% Similarity=0.578 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHh
Q 026955 20 HMEEVRRLRIQQR 32 (230)
Q Consensus 20 ~~e~v~~lr~~~~ 32 (230)
|++||+|.|-||=
T Consensus 61 LL~Ei~Rrr~~qp 73 (93)
T PF07216_consen 61 LLEEIQRRRQQQP 73 (93)
T ss_pred HHHHHHHHHHcCC
Confidence 7899999997764
No 170
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=22.61 E-value=38 Score=32.22 Aligned_cols=21 Identities=38% Similarity=0.912 Sum_probs=17.2
Q ss_pred cccCCCCCcCceeeCCCCCCeeEE
Q 026955 194 TERCSNCSGSGKVMCPTCLCTGMA 217 (230)
Q Consensus 194 ~~~Cp~C~G~Gkv~C~tC~GtG~~ 217 (230)
...|+.|+|.| |+.|+++|.+
T Consensus 260 dv~~~~~~g~g---c~~ck~~~Wi 280 (339)
T PRK00488 260 DVSCFKCGGKG---CRVCKGTGWL 280 (339)
T ss_pred EEEEeccCCCc---ccccCCCCce
Confidence 35799999876 9999998865
No 171
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.41 E-value=34 Score=27.38 Aligned_cols=8 Identities=25% Similarity=0.929 Sum_probs=5.3
Q ss_pred cCCCCCcC
Q 026955 196 RCSNCSGS 203 (230)
Q Consensus 196 ~Cp~C~G~ 203 (230)
+||+|++.
T Consensus 90 ~CP~Cgs~ 97 (117)
T PRK00564 90 VCEKCHSK 97 (117)
T ss_pred cCcCCCCC
Confidence 47777765
No 172
>PF11652 DUF3259: Protein of unknown function (DUF3259); InterPro: IPR024280 This entry describes a eukaryotic protein family of unknown function designated FAM167.
Probab=22.36 E-value=96 Score=24.07 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=26.7
Q ss_pred HHHHHhhhchhhhhHHHHHHHHHHHh-------hhhhccCCCccccCCCC
Q 026955 7 HDNIRSRRNKIFLHMEEVRRLRIQQR-------IKNAELGISKEEQDNEL 49 (230)
Q Consensus 7 ~~ni~~r~~~~~~~~e~v~~lr~~~~-------~~~~~~~~~~~~~~~~~ 49 (230)
||+--+| +..-|=+|+-+|||||- |..+..+++++||.+++
T Consensus 4 qD~qLAr--qLmrlR~~i~~lkveq~C~~H~~mLdda~~elEe~~elsdL 51 (84)
T PF11652_consen 4 QDQQLAR--QLMRLRSEIHRLKVEQTCHEHREMLDDATYELEEEDELSDL 51 (84)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhh
Confidence 3444444 34445688999999984 55566677666666666
No 173
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.21 E-value=36 Score=27.92 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=7.6
Q ss_pred ccccCCCCccc
Q 026955 160 GYLACARCSNT 170 (230)
Q Consensus 160 G~~~C~~C~GS 170 (230)
....|..|+-.
T Consensus 69 ~~~~C~~CG~~ 79 (135)
T PRK03824 69 AVLKCRNCGNE 79 (135)
T ss_pred eEEECCCCCCE
Confidence 34689999843
No 174
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=21.90 E-value=45 Score=32.00 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhccccccchhhhh
Q 026955 71 YATCFSLIAGVILFGGLLAPSLELKL 96 (230)
Q Consensus 71 ~~~~~~~~~~~~~~g~~~ap~~~~~l 96 (230)
-.+..++|-+||+|+-|||-+|.-..
T Consensus 13 ~AiiiS~vLH~iLfalLIwgS~~~~~ 38 (387)
T COG3064 13 RAIIISAVLHIILFALLIWGSLDETI 38 (387)
T ss_pred hHHhHHHHHHHHHHHHHHHhhhhhcc
Confidence 34556778899999999998885443
No 175
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.75 E-value=58 Score=28.78 Aligned_cols=46 Identities=30% Similarity=0.668 Sum_probs=26.6
Q ss_pred ecceeeccccccccc--ccCC-----CCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 147 QQEQKRCKYCLGTGY--LACA-----RCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 147 ~~~~k~C~~C~GtG~--~~C~-----~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
......|..|...|. .-|+ .|+=.|.... .| .....|..|+-.|.+
T Consensus 57 ~~~~~~C~nCg~~GH~~~DCP~~iC~~C~~~~H~s~-----~C---------~~~~~C~~Cg~~GH~ 109 (190)
T COG5082 57 REENPVCFNCGQNGHLRRDCPHSICYNCSWDGHRSN-----HC---------PKPKKCYNCGETGHL 109 (190)
T ss_pred cccccccchhcccCcccccCChhHhhhcCCCCcccc-----cC---------CcccccccccccCcc
Confidence 344568999987775 3455 7754554432 11 122567777776654
No 176
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=21.62 E-value=62 Score=27.65 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=19.2
Q ss_pred CCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCc
Q 026955 164 CARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSG 204 (230)
Q Consensus 164 C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~G 204 (230)
|+.|++.+...... ..+-+-+....-....|++|+=+-
T Consensus 1 CP~Cg~~~~~~~~~---~~~IP~F~evii~sf~C~~CGyr~ 38 (163)
T TIGR00340 1 CPVCGSRTLKAVTY---DYDIPYFGKIMLSTYICEKCGYRS 38 (163)
T ss_pred CCCCCCcceEeeeE---eccCCCcceEEEEEEECCCCCCch
Confidence 88888875543211 111111111223456899998653
No 177
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=20.72 E-value=56 Score=34.20 Aligned_cols=44 Identities=20% Similarity=0.525 Sum_probs=27.6
Q ss_pred hhhccceeecceeecccccc-------cccccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCc
Q 026955 139 IVEVNNVKQQEQKRCKYCLG-------TGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSG 204 (230)
Q Consensus 139 vve~n~vk~~~~k~C~~C~G-------tG~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~G 204 (230)
++-|++|. ....|+.|.. ++...|-.|+-... ....||+|++.-
T Consensus 435 ~l~C~~Cg--~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~--------------------~p~~Cp~Cgs~~ 485 (730)
T COG1198 435 LLLCRDCG--YIAECPNCDSPLTLHKATGQLRCHYCGYQEP--------------------IPQSCPECGSEH 485 (730)
T ss_pred eeecccCC--CcccCCCCCcceEEecCCCeeEeCCCCCCCC--------------------CCCCCCCCCCCe
Confidence 45566653 3568888866 34567777765421 235789998873
No 178
>PF05385 Adeno_E4: Mastadenovirus early E4 13 kDa protein; InterPro: IPR008680 This family consists of Homo sapiens and simian mastadenovirus early E4 13 kDa proteins. Human adenovirus 9 (HAdV-9) is unique in eliciting exclusively estrogen-dependent mammary tumours in Rattus spp. and in not requiring viral E1 region transforming genes for tumorigenicity. E4 codes for an oncoprotein essential for tumourigenesis by Ad9 [].
Probab=20.54 E-value=1.3e+02 Score=24.38 Aligned_cols=39 Identities=31% Similarity=0.524 Sum_probs=30.9
Q ss_pred CCCCC--CCChhH------HHHHHHHHHHHHHHHhhhccccccchhh
Q 026955 56 IPFLP--PLSAAN------LKVYYATCFSLIAGVILFGGLLAPSLEL 94 (230)
Q Consensus 56 ~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~g~~~ap~~~~ 94 (230)
+|-|| |++.+. |...|+++.=++.+|...|-.|.|-.|-
T Consensus 3 LP~LPpPPv~rd~~~Ci~WLglA~at~~Dv~r~ir~~g~~ispeAe~ 49 (109)
T PF05385_consen 3 LPSLPPPPVCRDQSACIAWLGLAYATVVDVIRAIRRDGVFISPEAER 49 (109)
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHcCeeECHHHHH
Confidence 56665 475544 5688999999999999999999998754
No 179
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=20.52 E-value=1.2e+02 Score=24.52 Aligned_cols=12 Identities=33% Similarity=1.007 Sum_probs=7.9
Q ss_pred ccCCCCCcCcee
Q 026955 195 ERCSNCSGSGKV 206 (230)
Q Consensus 195 ~~Cp~C~G~Gkv 206 (230)
..|..|...|..
T Consensus 78 ~~C~~Cg~~GH~ 89 (148)
T PTZ00368 78 RSCYNCGQTGHI 89 (148)
T ss_pred cccCcCCCCCcc
Confidence 457777777654
No 180
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.51 E-value=1.2e+02 Score=21.89 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=20.6
Q ss_pred hHHHHHHHHhhhchhhhhHHHHHHHHHHHhhhhh
Q 026955 3 LQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNA 36 (230)
Q Consensus 3 ~~e~~~ni~~r~~~~~~~~e~v~~lr~~~~~~~~ 36 (230)
++++.+-+..-..+|=-|=++++.|+- ||++.
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~--rl~~~ 51 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRE--RLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--T----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Confidence 466777777777778888888888764 44443
Done!