Query 026955
Match_columns 230
No_of_seqs 167 out of 1126
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:00:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026955.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026955hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 99.4 1.7E-13 5.6E-18 105.6 5.3 85 109-220 3-96 (104)
2 1nlt_A Protein YDJ1, mitochond 99.2 6.7E-12 2.3E-16 110.2 3.1 90 108-220 12-111 (248)
3 1exk_A DNAJ protein; extended 99.1 2.6E-11 8.8E-16 88.3 4.5 65 144-219 5-78 (79)
4 1exk_A DNAJ protein; extended 97.9 4.9E-06 1.7E-10 60.1 3.2 43 161-219 11-64 (79)
5 2ctt_A DNAJ homolog subfamily 97.7 1.9E-05 6.4E-10 60.3 3.5 38 150-206 45-93 (104)
6 3lcz_A YCZA, inhibitor of trap 97.4 5.2E-05 1.8E-09 52.4 2.3 28 193-220 8-38 (53)
7 1nlt_A Protein YDJ1, mitochond 97.2 0.00012 4.1E-09 64.0 2.2 40 150-206 54-108 (248)
8 2bx9_A Anti-trap, AT, tryptoph 97.1 0.00028 9.5E-09 48.7 2.8 26 194-219 9-37 (53)
9 3lcz_A YCZA, inhibitor of trap 96.6 0.00097 3.3E-08 46.0 2.3 26 150-175 9-37 (53)
10 2bx9_A Anti-trap, AT, tryptoph 96.6 0.001 3.5E-08 45.8 2.3 26 150-175 9-37 (53)
11 2fiy_A Protein FDHE homolog; F 73.7 1 3.5E-05 40.6 1.2 23 207-229 255-277 (309)
12 3pmq_A Decaheme cytochrome C M 61.7 2.1 7.1E-05 42.6 0.7 81 144-226 185-293 (669)
13 1pft_A TFIIB, PFTFIIBN; N-term 57.3 6.1 0.00021 25.6 2.2 17 195-211 6-30 (50)
14 3pmq_A Decaheme cytochrome C M 56.1 2.3 7.9E-05 42.3 -0.1 10 150-159 211-220 (669)
15 2apo_B Ribosome biogenesis pro 55.8 4 0.00014 28.6 1.1 34 194-230 6-40 (60)
16 2aus_D NOP10, ribosome biogene 53.1 4.7 0.00016 28.3 1.1 33 195-230 6-39 (60)
17 3pih_A Uvrabc system protein A 50.5 7.3 0.00025 39.9 2.5 22 207-228 275-296 (916)
18 3nyb_B Protein AIR2; polya RNA 46.3 11 0.00038 27.5 2.3 50 150-210 5-64 (83)
19 2ygr_A Uvrabc system protein A 44.2 11 0.00039 39.0 2.8 18 207-224 302-319 (993)
20 3h3g_B Parathyroid hormone-rel 41.4 9.4 0.00032 22.2 1.0 16 9-24 3-20 (24)
21 1btq_A BAND 3 anion transport 40.3 15 0.00051 21.6 1.8 20 70-89 6-25 (26)
22 1dl6_A Transcription factor II 36.3 23 0.00079 24.0 2.5 24 193-219 10-41 (58)
23 3ts2_A Protein LIN-28 homolog 35.9 18 0.0006 28.9 2.2 39 162-211 98-138 (148)
24 2ihx_A Nucleocapsid (NC) prote 34.3 29 0.00098 23.4 2.8 46 160-212 3-50 (61)
25 1qo8_A Flavocytochrome C3 fuma 33.7 3.8 0.00013 38.4 -2.5 59 152-215 14-86 (566)
26 2a51_A Nucleocapsid protein; s 31.3 21 0.00071 21.9 1.5 32 163-206 2-33 (39)
27 2lli_A Protein AIR2; RNA surve 29.9 19 0.00065 27.3 1.3 48 152-210 24-82 (124)
28 2hf1_A Tetraacyldisaccharide-1 29.6 22 0.00077 25.1 1.6 16 196-211 10-32 (68)
29 1y0p_A Fumarate reductase flav 29.4 6 0.00021 37.0 -1.9 62 152-217 13-91 (571)
30 1oo0_A MAGO nashi protein; RNA 29.2 46 0.0016 27.1 3.6 28 19-52 56-83 (147)
31 3zxw_B Ribulose bisphosphate c 28.9 36 0.0012 26.7 2.8 31 55-94 12-42 (118)
32 2jr6_A UPF0434 protein NMA0874 28.6 23 0.00079 25.0 1.5 17 195-211 9-32 (68)
33 1vq8_Z 50S ribosomal protein L 28.2 20 0.00069 26.3 1.2 8 162-169 28-35 (83)
34 1rbl_M Ribulose 1,5 bisphospha 28.1 40 0.0014 26.0 2.9 31 56-95 14-44 (109)
35 1svd_M Ribulose bisphosphate c 27.9 40 0.0014 26.1 2.9 30 56-94 16-45 (110)
36 2pk7_A Uncharacterized protein 27.4 26 0.00088 24.8 1.6 16 196-211 10-32 (69)
37 2jny_A Uncharacterized BCR; st 26.8 27 0.00094 24.6 1.6 17 195-211 11-34 (67)
38 2r6f_A Excinuclease ABC subuni 26.6 17 0.00058 37.6 0.7 12 207-218 293-304 (972)
39 4f0h_B Ribulose bisphosphate c 26.4 43 0.0015 27.0 2.9 32 55-95 7-38 (138)
40 3m1f_V VOPL, putative uncharac 26.2 23 0.00078 21.6 0.9 6 20-25 9-14 (31)
41 1a1t_A Nucleocapsid protein; s 26.2 30 0.001 22.6 1.7 16 195-210 34-51 (55)
42 2js4_A UPF0434 protein BB2007; 25.5 30 0.001 24.5 1.6 17 195-211 9-32 (70)
43 3mqm_A Probable histone-lysine 25.2 24 0.00083 26.8 1.2 50 21-73 2-51 (126)
44 2ec7_A GAG polyprotein (PR55GA 25.1 31 0.0011 22.2 1.6 37 162-210 7-45 (49)
45 2bl6_A Nucleocapsid protein P1 24.3 28 0.00096 21.0 1.2 33 163-209 2-36 (37)
46 3u5n_A E3 ubiquitin-protein li 23.6 59 0.002 26.7 3.4 56 151-213 8-68 (207)
47 1bxn_I Rubisco, protein (ribul 23.3 54 0.0018 26.4 2.9 32 55-95 7-38 (139)
48 1wdd_S Ribulose bisphosphate c 23.3 54 0.0019 26.0 2.9 31 56-95 15-45 (128)
49 1bwv_S Rubisco, protein (ribul 23.1 54 0.0018 26.4 2.9 31 56-95 8-38 (138)
50 2kpi_A Uncharacterized protein 22.4 37 0.0013 23.0 1.5 18 194-211 10-34 (56)
51 1weo_A Cellulose synthase, cat 21.9 22 0.00077 26.9 0.4 44 123-169 18-66 (93)
52 1wii_A Hypothetical UPF0222 pr 21.4 71 0.0024 23.5 3.1 25 203-227 45-69 (85)
53 2r6f_A Excinuclease ABC subuni 21.3 41 0.0014 34.8 2.3 21 196-216 755-787 (972)
54 2bx2_L Ribonuclease E, RNAse E 21.2 28 0.00094 33.5 1.0 13 194-206 408-420 (517)
55 3gla_A Low molecular weight he 20.4 87 0.003 22.3 3.4 30 100-130 60-89 (100)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.7e-13 Score=105.58 Aligned_cols=85 Identities=22% Similarity=0.432 Sum_probs=68.1
Q ss_pred eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc------ccCCCCccccEEEeeeccccc
Q 026955 109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV 182 (230)
Q Consensus 109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~ 182 (230)
+.++++.+++.| +|+|..+ +++..+...|+.|+|+|. ..|+.|+|+|++....
T Consensus 3 ~~~~~l~vslee----~~~G~~~------------~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----- 61 (104)
T 2ctt_A 3 SGSSGMELTFNQ----AAKGVNK------------EFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----- 61 (104)
T ss_dssp CCCCCCCCCCSS----CCSSSCT------------TCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE-----
T ss_pred ceEEEEEEEHHH----HcCCCEE------------EEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe-----
Confidence 356777888888 8888855 455667889999999994 6899999999986532
Q ss_pred cCCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEece
Q 026955 183 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS 220 (230)
Q Consensus 183 ~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~ 220 (230)
| .++...+|+.|+|+|++ +|++|+|+|++.++
T Consensus 62 ---G---~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~ 96 (104)
T 2ctt_A 62 ---G---PFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQK 96 (104)
T ss_dssp ---T---TEEEEEECSSSSSSSEECSSCCSSSSSCSEECCC
T ss_pred ---C---CEEEEEECCcCCCcceECCCcCCCCCCeeEEEEE
Confidence 2 23457899999999998 89999999998643
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.18 E-value=6.7e-12 Score=110.22 Aligned_cols=90 Identities=20% Similarity=0.453 Sum_probs=68.4
Q ss_pred EeeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc-----ccCCCCccccEEEeeeccccc
Q 026955 108 QSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTV 182 (230)
Q Consensus 108 ~~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~-----~~C~~C~GSG~v~~~~~~~~~ 182 (230)
..++.+..+++.| +|+|... +++..+...|..|+|+|. ..|+.|+|+|++.... .
T Consensus 12 ~d~~~~l~vslee----~~~G~~k------------~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~----~ 71 (248)
T 1nlt_A 12 KDIKHEISASLEE----LYKGRTA------------KLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTR----Q 71 (248)
T ss_dssp CCEEEEEEECTTH----HHHCEEE------------EEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEE----E
T ss_pred CCEEEEEEecHHH----hcCCceE------------EEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEE----e
Confidence 3455566677777 7888855 566777889999999995 6899999999986543 2
Q ss_pred cCCCCCCCCCCcccCCCCCcCcee-----eCCCCCCeeEEece
Q 026955 183 NGGDQPLSAPKTERCSNCSGSGKV-----MCPTCLCTGMAMAS 220 (230)
Q Consensus 183 ~g~G~~~~~~~~~~Cp~C~G~Gkv-----~C~tC~GtG~~~~~ 220 (230)
.++ + .++.+.+|+.|+|+|++ +|++|+|+|.+...
T Consensus 72 ~g~-~--~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~~ 111 (248)
T 1nlt_A 72 MGP-M--IQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENER 111 (248)
T ss_dssp SSS-E--EEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEE
T ss_pred cCc-e--EEEEEEcCCCCCCcCEEeccCCCCcccCCCceEeee
Confidence 222 1 23467899999999964 79999999998654
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.15 E-value=2.6e-11 Score=88.33 Aligned_cols=65 Identities=22% Similarity=0.633 Sum_probs=53.1
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++......|+.|+|+|. ..|+.|+|+|++...+ | .++...+|+.|+|+|++ +|++|+|.
T Consensus 5 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--------g---~~~~~~~C~~C~G~G~~~~~~C~~C~G~ 73 (79)
T 1exk_A 5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ--------G---FFAVQQTCPHCQGRGTLIKDPCNKCHGH 73 (79)
T ss_dssp SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE--------T---TEEEEEECTTTTTSSEECSSBCGGGTTS
T ss_pred EEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc--------C---CCEEeeECcCCCCccEECCCcCCCCCCe
Confidence 455677889999999995 5899999999986422 2 13456799999999998 89999999
Q ss_pred eEEec
Q 026955 215 GMAMA 219 (230)
Q Consensus 215 G~~~~ 219 (230)
|++.+
T Consensus 74 G~~~~ 78 (79)
T 1exk_A 74 GRVER 78 (79)
T ss_dssp SEEEC
T ss_pred EEEee
Confidence 99853
No 4
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.93 E-value=4.9e-06 Score=60.13 Aligned_cols=43 Identities=30% Similarity=0.767 Sum_probs=34.4
Q ss_pred cccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee-----------eCCCCCCeeEEec
Q 026955 161 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 219 (230)
Q Consensus 161 ~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv-----------~C~tC~GtG~~~~ 219 (230)
...|+.|+|+|.... ....+|+.|+|+|++ +|++|+|+|++.+
T Consensus 11 ~~~C~~C~G~G~~~~----------------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~ 64 (79)
T 1exk_A 11 LEECDVCHGSGAKPG----------------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK 64 (79)
T ss_dssp EEECGGGTTTSBCSS----------------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS
T ss_pred ceECCCCcccccCCC----------------ccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC
Confidence 468999999996421 134689999999975 7999999999863
No 5
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=1.9e-05 Score=60.29 Aligned_cols=38 Identities=37% Similarity=1.027 Sum_probs=31.5
Q ss_pred eeeccccccccc-----------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGY-----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~-----------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|+.|+|+|. .+|+.|+|+|.+. ..+|+.|.|.|.+
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-------------------~~~C~~C~G~G~v 93 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-------------------ISPCVVCRGAGQA 93 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-------------------SSCCSSSSSCSEE
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-------------------CCcCCCCCCeeEE
Confidence 568999999995 3799999999764 2479999999986
No 6
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.45 E-value=5.2e-05 Score=52.42 Aligned_cols=28 Identities=39% Similarity=1.000 Sum_probs=23.9
Q ss_pred CcccCCCCCcCcee---eCCCCCCeeEEece
Q 026955 193 KTERCSNCSGSGKV---MCPTCLCTGMAMAS 220 (230)
Q Consensus 193 ~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~ 220 (230)
...+|++|+|+|++ +|++|+|+|.+.+.
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence 45789999999996 89999999988754
No 7
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=97.19 E-value=0.00012 Score=63.95 Aligned_cols=40 Identities=33% Similarity=0.833 Sum_probs=29.9
Q ss_pred eeeccccccccc---------------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 150 QKRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 150 ~k~C~~C~GtG~---------------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
...|+.|+|+|. .+|+.|+|+|.+.. ...+|+.|+|+|.+
T Consensus 54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~-----------------~~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID-----------------PKDRCKSCNGKKVE 108 (248)
T ss_dssp CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC-----------------TTSBCSSSTTSCEE
T ss_pred CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec-----------------cCCCCcccCCCceE
Confidence 368999999985 36888888886541 24589999999875
No 8
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.09 E-value=0.00028 Score=48.71 Aligned_cols=26 Identities=27% Similarity=0.876 Sum_probs=19.0
Q ss_pred cccCCCCCcCcee---eCCCCCCeeEEec
Q 026955 194 TERCSNCSGSGKV---MCPTCLCTGMAMA 219 (230)
Q Consensus 194 ~~~Cp~C~G~Gkv---~C~tC~GtG~~~~ 219 (230)
..+|+.|+|+|++ +|++|+|+|++..
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCCCCCccCCCCccEEE
Confidence 3567777777775 6888888887764
No 9
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.59 E-value=0.00097 Score=45.96 Aligned_cols=26 Identities=27% Similarity=0.811 Sum_probs=21.1
Q ss_pred eeeccccccccc---ccCCCCccccEEEe
Q 026955 150 QKRCKYCLGTGY---LACARCSNTGSLVL 175 (230)
Q Consensus 150 ~k~C~~C~GtG~---~~C~~C~GSG~v~~ 175 (230)
...|+.|+|+|. .+|+.|+|+|.+..
T Consensus 9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGVILT 37 (53)
T ss_dssp EEECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred eccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence 568999999987 57888888888764
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.56 E-value=0.001 Score=45.81 Aligned_cols=26 Identities=27% Similarity=0.689 Sum_probs=19.7
Q ss_pred eeeccccccccc---ccCCCCccccEEEe
Q 026955 150 QKRCKYCLGTGY---LACARCSNTGSLVL 175 (230)
Q Consensus 150 ~k~C~~C~GtG~---~~C~~C~GSG~v~~ 175 (230)
...|+.|+|+|+ .+|+.|+|+|++..
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEEC
T ss_pred cccCCCCcceeccCCCCCccCCCCccEEE
Confidence 457888888886 47888888887764
No 11
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=73.68 E-value=1 Score=40.62 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.6
Q ss_pred eCCCCCCeeEEeceecCCCCCCC
Q 026955 207 MCPTCLCTGMAMASEHDPRIDPF 229 (230)
Q Consensus 207 ~C~tC~GtG~~~~~ehD~~idpf 229 (230)
.|.+|++.=++.-.+.|+.+||+
T Consensus 255 ~C~~C~~YlK~~~~~~d~~~dp~ 277 (309)
T 2fiy_A 255 TCPSCQGYLKQFYLEFDRHADAL 277 (309)
T ss_dssp EETTTTEEEEEEETTTCTTCCHH
T ss_pred EcccccchHhhhhhccCCCCCcc
Confidence 79999998888888999999986
No 12
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=61.72 E-value=2.1 Score=42.60 Aligned_cols=81 Identities=12% Similarity=0.240 Sum_probs=46.9
Q ss_pred ceeecceeeccccccccc---------ccCCCCccccEEEeeec----cccccCCCCCCCCCCcccCCCCCcCce-----
Q 026955 144 NVKQQEQKRCKYCLGTGY---------LACARCSNTGSLVLIEP----VSTVNGGDQPLSAPKTERCSNCSGSGK----- 205 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~---------~~C~~C~GSG~v~~~~~----~~~~~g~G~~~~~~~~~~Cp~C~G~Gk----- 205 (230)
+++..+...|..|+|+|. ..|+.|+|+........ ..+..-.|. ..+....|..|+..+.
T Consensus 185 ~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~--fP~~~~~C~~CH~~~~~la~~ 262 (669)
T 3pmq_A 185 TRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTG--FPQSISNCQTCHADNPDLADR 262 (669)
T ss_dssp CCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSS--CSSCTTCCTTTSCCCTTCCSC
T ss_pred EEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccC--CCCccCcchhhcCCccccccc
Confidence 456667789999999873 58999999942211100 000000111 1133567999999875
Q ss_pred ---------eeCCCCCCeeEE-eceecCCCC
Q 026955 206 ---------VMCPTCLCTGMA-MASEHDPRI 226 (230)
Q Consensus 206 ---------v~C~tC~GtG~~-~~~ehD~~i 226 (230)
..|.+|+...-. ....|++..
T Consensus 263 ~~w~~~ps~~aC~sCH~~~~f~~g~~H~~~~ 293 (669)
T 3pmq_A 263 QNWYRVPTMEACGACHTQINFPAGQGHPAQT 293 (669)
T ss_dssp SCTTTCCCHHHHHHHCCSCBTTTTBSSCCCS
T ss_pred cccccCCchhhhhhccCCcccccccCCcccC
Confidence 269999965421 224465543
No 13
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=57.26 E-value=6.1 Score=25.64 Aligned_cols=17 Identities=29% Similarity=1.148 Sum_probs=11.5
Q ss_pred ccCCCCCc--------CceeeCCCC
Q 026955 195 ERCSNCSG--------SGKVMCPTC 211 (230)
Q Consensus 195 ~~Cp~C~G--------~Gkv~C~tC 211 (230)
..||.|++ +|.+.|+.|
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~C 30 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKC 30 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSS
T ss_pred EeCcCCCCcceEEcCCCCeEECccc
Confidence 35777766 255688888
No 14
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=56.12 E-value=2.3 Score=42.25 Aligned_cols=10 Identities=20% Similarity=0.630 Sum_probs=5.3
Q ss_pred eeeccccccc
Q 026955 150 QKRCKYCLGT 159 (230)
Q Consensus 150 ~k~C~~C~Gt 159 (230)
.+.|..|+|+
T Consensus 211 ~~tC~tCHGs 220 (669)
T 3pmq_A 211 VETCVTCHNS 220 (669)
T ss_dssp SSCSTTTSST
T ss_pred CccCCCCCCC
Confidence 3455555555
No 15
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=55.85 E-value=4 Score=28.62 Aligned_cols=34 Identities=21% Similarity=0.484 Sum_probs=23.6
Q ss_pred cccCCCCCcCce-eeCCCCCCeeEEeceecCCCCCCCC
Q 026955 194 TERCSNCSGSGK-VMCPTCLCTGMAMASEHDPRIDPFD 230 (230)
Q Consensus 194 ~~~Cp~C~G~Gk-v~C~tC~GtG~~~~~ehD~~idpf~ 230 (230)
-.+|+.|+-... ..|+.|.+ ...+-|-+|+.|=|
T Consensus 6 mr~C~~CgvYTLk~~CP~CG~---~T~~~hParfSp~D 40 (60)
T 2apo_B 6 MKKCPKCGLYTLKEICPKCGE---KTVIPKPPKFSLED 40 (60)
T ss_dssp CEECTTTCCEESSSBCSSSCS---BCBCCCCCCCCTTC
T ss_pred ceeCCCCCCEeccccCcCCCC---cCCCCCCCCCCCCc
Confidence 357999954332 27999954 46678888888854
No 16
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=53.15 E-value=4.7 Score=28.31 Aligned_cols=33 Identities=30% Similarity=0.681 Sum_probs=22.6
Q ss_pred ccCCCCCcCce-eeCCCCCCeeEEeceecCCCCCCCC
Q 026955 195 ERCSNCSGSGK-VMCPTCLCTGMAMASEHDPRIDPFD 230 (230)
Q Consensus 195 ~~Cp~C~G~Gk-v~C~tC~GtG~~~~~ehD~~idpf~ 230 (230)
.+|+.|+-... ..|+.|.+ ...+.|=+||.|=|
T Consensus 6 r~C~~Cg~YTLk~~CP~CG~---~t~~ahParfSP~D 39 (60)
T 2aus_D 6 RKCPKCGRYTLKETCPVCGE---KTKVAHPPRFSPED 39 (60)
T ss_dssp EECTTTCCEESSSBCTTTCS---BCEESSCCCCCSCC
T ss_pred eECCCCCCEEccccCcCCCC---ccCCCCCCCCCCCC
Confidence 57999954332 26999954 45677888888754
No 17
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=50.51 E-value=7.3 Score=39.87 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=13.0
Q ss_pred eCCCCCCeeEEeceecCCCCCC
Q 026955 207 MCPTCLCTGMAMASEHDPRIDP 228 (230)
Q Consensus 207 ~C~tC~GtG~~~~~ehD~~idp 228 (230)
+|++|.|.|.+..-+.|.-|||
T Consensus 275 ~C~~C~G~G~~~~~d~~~~~d~ 296 (916)
T 3pih_A 275 ACPNCHGLGFTFEVDPSLVIDE 296 (916)
T ss_dssp BCTTTTTSSEEEEECSCCC---
T ss_pred cCCeeecccceEecCHHHccCC
Confidence 5888888887765555544444
No 18
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=46.33 E-value=11 Score=27.53 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=26.5
Q ss_pred eeeccccccccc--------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee--eCCC
Q 026955 150 QKRCKYCLGTGY--------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPT 210 (230)
Q Consensus 150 ~k~C~~C~GtG~--------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv--~C~t 210 (230)
...|..|..+|. .+|-.|...|.+... +.. ......|.+|+..|.+ -|+.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~-----c~~------p~~~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKP-----KVL------PFHTIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGGTCCCCBC------------------------CCCBCSSSSCBSSCGGGCSS
T ss_pred cCCCCCCCCCCCccccCCCcccccccccCCccccc-----ccC------CCCCCeecccCCCCcCcccCCc
Confidence 347888888874 256678877765321 110 0134689999999987 6775
No 19
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=44.21 E-value=11 Score=38.97 Aligned_cols=18 Identities=22% Similarity=0.604 Sum_probs=12.3
Q ss_pred eCCCCCCeeEEeceecCC
Q 026955 207 MCPTCLCTGMAMASEHDP 224 (230)
Q Consensus 207 ~C~tC~GtG~~~~~ehD~ 224 (230)
+|++|.|.|.+..-+.|.
T Consensus 302 aCp~C~G~G~~~~~d~~~ 319 (993)
T 2ygr_A 302 ACPDCSGLGIRKEVDPEL 319 (993)
T ss_dssp BCTTTTTSCEEEEECTTS
T ss_pred CCCCCcCccceeecCHHH
Confidence 588888888876544443
No 20
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=41.45 E-value=9.4 Score=22.25 Aligned_cols=16 Identities=31% Similarity=0.661 Sum_probs=11.1
Q ss_pred HHHhhhchhhh--hHHHH
Q 026955 9 NIRSRRNKIFL--HMEEV 24 (230)
Q Consensus 9 ni~~r~~~~~~--~~e~v 24 (230)
+|+..|..||| |||||
T Consensus 3 s~Q~~rRr~wL~~ll~~v 20 (24)
T 3h3g_B 3 SIQDLRRRFFLHHLIAEI 20 (26)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 45666777777 67876
No 21
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=40.33 E-value=15 Score=21.64 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhhccccc
Q 026955 70 YYATCFSLIAGVILFGGLLA 89 (230)
Q Consensus 70 ~~~~~~~~~~~~~~~g~~~a 89 (230)
..-.|++.++-.|.||||..
T Consensus 6 ~~FlyFa~l~paIaFGgLl~ 25 (26)
T 1btq_A 6 VIFIYFAALSPAITFGXXXX 25 (26)
T ss_pred HHHHHHHHHcchhccccccC
Confidence 34456777888999999863
No 22
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=36.26 E-value=23 Score=24.00 Aligned_cols=24 Identities=29% Similarity=0.922 Sum_probs=16.1
Q ss_pred CcccCCCCCcC--------ceeeCCCCCCeeEEec
Q 026955 193 KTERCSNCSGS--------GKVMCPTCLCTGMAMA 219 (230)
Q Consensus 193 ~~~~Cp~C~G~--------Gkv~C~tC~GtG~~~~ 219 (230)
....||.|++. |.+.|..| |.+..
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC~~C---GlVl~ 41 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMICPEC---GLVVG 41 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTT---CCEEC
T ss_pred ccccCcCCCCCceeEeCCCCeEEeCCC---CCEEe
Confidence 34468888762 55689999 56654
No 23
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=35.93 E-value=18 Score=28.93 Aligned_cols=39 Identities=18% Similarity=0.467 Sum_probs=26.4
Q ss_pred ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee--eCCCC
Q 026955 162 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPTC 211 (230)
Q Consensus 162 ~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv--~C~tC 211 (230)
..|..|...|.+.. .|... .....|..|...|.+ -|+.-
T Consensus 98 ~~C~~Cg~~GH~a~-----~C~~~------~~~~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 98 DRCYNCGGLDHHAK-----ECKLP------PQPKKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCTTTCCSSCCGG-----GCCSC------CCCCCCTTTCCSSCCGGGCTTT
T ss_pred CcccEeCCccchhh-----hCCCC------CCCCcccccCCcCCEeccCcCC
Confidence 56999999888743 23211 124579999999887 58764
No 24
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=34.29 E-value=29 Score=23.39 Aligned_cols=46 Identities=24% Similarity=0.448 Sum_probs=26.2
Q ss_pred ccccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee--eCCCCC
Q 026955 160 GYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPTCL 212 (230)
Q Consensus 160 G~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv--~C~tC~ 212 (230)
....|..|...|.+.. .|..... .......|..|...|.+ .|+.=.
T Consensus 3 ~~~~C~~Cg~~GH~a~-----~C~~~~~--~~~~~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQA-----QCPKKRK--SGNSRERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp CTTBCSSSCCBTCCGG-----GCTTTTS--SSCCCSBCTTTCCBSSCGGGCCCCC
T ss_pred CCCcccccCCCCeehh-----hCcCCcC--CCCCCCeeCCCCCCCCCcCCCcCCC
Confidence 3456888888887653 1211100 00113579999998876 676543
No 25
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=33.68 E-value=3.8 Score=38.41 Aligned_cols=59 Identities=14% Similarity=0.343 Sum_probs=34.7
Q ss_pred eccccccccc----------ccCCCCccccEEEee-eccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCee
Q 026955 152 RCKYCLGTGY----------LACARCSNTGSLVLI-EPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTG 215 (230)
Q Consensus 152 ~C~~C~GtG~----------~~C~~C~GSG~v~~~-~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG 215 (230)
.|..|||.+. ..|..||+...-... ......+.. -.....|..|+..... .|..|+...
T Consensus 14 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~h~~-----~~~~~~C~~CH~~h~~~~~~c~~ch~~~ 86 (566)
T 1qo8_A 14 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKLQFDPHNS-----HLGDINCTSCHKGHEEPKFYCNECHSFD 86 (566)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSSSSCTTSS-----TTCSCCGGGTSCSSSCCCCGGGGTCCCC
T ss_pred ChhhhCCCccccccccCccCCHHhhhCcCHHHHhhccccCCcchh-----cCCCCCchhhCcCCcCcCchhhhhcCCC
Confidence 7999998864 269999986321110 000000100 0135689999986543 799999764
No 26
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=31.27 E-value=21 Score=21.94 Aligned_cols=32 Identities=22% Similarity=0.527 Sum_probs=18.4
Q ss_pred cCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 163 ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 163 ~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
.|..|...|.+.. .+..+ ....|..|+..|.+
T Consensus 2 ~C~~Cg~~GH~a~-----~C~~~-------~~~~C~~Cg~~GH~ 33 (39)
T 2a51_A 2 TCFNCGKPGHTAR-----MCRQP-------RQEGCWNCGSKEHR 33 (39)
T ss_dssp BCTTTCCBSSCTT-----TCCSC-------CCSSCTTTCCSSSC
T ss_pred eeeccCCCCcccc-----cCCCC-------CCCccccCCCCCCc
Confidence 4777777776532 12111 13468888887765
No 27
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=29.87 E-value=19 Score=27.34 Aligned_cols=48 Identities=25% Similarity=0.640 Sum_probs=28.3
Q ss_pred eccccccc-cc--------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee--eCCC
Q 026955 152 RCKYCLGT-GY--------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPT 210 (230)
Q Consensus 152 ~C~~C~Gt-G~--------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv--~C~t 210 (230)
.|..|... |. ..|..|...|.+.. .+... .....|..|...|.+ .|+.
T Consensus 24 ~C~~Cg~~~gH~~~~C~~~~~C~~Cg~~GH~~~-----~C~~~------~~~~~C~~Cg~~GH~~~~Cp~ 82 (124)
T 2lli_A 24 ICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRS-----QCPHK------WKKVQCTLCKSKKHSKERCPS 82 (124)
T ss_dssp CCTTTCCTTTCCTTTGGGSSCSSSSSCSSSSTT-----TSCCC------CCCCSSSSSCSSCCCTTTCCC
T ss_pred cCcCCCCcCCccCcccCCcccccccCCCCCccc-----cCcCc------ccCccCCCCCcCCcchhhCCC
Confidence 67777665 52 36777777776532 11111 123578888888876 5664
No 28
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=29.63 E-value=22 Score=25.06 Aligned_cols=16 Identities=25% Similarity=0.785 Sum_probs=9.7
Q ss_pred cCCCCCcC-------ceeeCCCC
Q 026955 196 RCSNCSGS-------GKVMCPTC 211 (230)
Q Consensus 196 ~Cp~C~G~-------Gkv~C~tC 211 (230)
.||.|.|. |...|+.|
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~c 32 (68)
T 2hf1_A 10 VCPLCKGPLVFDKSKDELICKGD 32 (68)
T ss_dssp BCTTTCCBCEEETTTTEEEETTT
T ss_pred ECCCCCCcCeEeCCCCEEEcCCC
Confidence 45555553 55577777
No 29
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=29.38 E-value=6 Score=37.04 Aligned_cols=62 Identities=19% Similarity=0.451 Sum_probs=35.6
Q ss_pred eccccccccc-----------ccCCCCccccEEEeeec---cccccCCCCCCCCCCcccCCCCCcCce---eeCCCCCCe
Q 026955 152 RCKYCLGTGY-----------LACARCSNTGSLVLIEP---VSTVNGGDQPLSAPKTERCSNCSGSGK---VMCPTCLCT 214 (230)
Q Consensus 152 ~C~~C~GtG~-----------~~C~~C~GSG~v~~~~~---~~~~~g~G~~~~~~~~~~Cp~C~G~Gk---v~C~tC~Gt 214 (230)
.|..||+... ..|..||.......... ....+.. .......|.+|+..-. ..|.+||..
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~~~~~~~h~~----H~~~~~~C~~CH~~h~~~~~~C~~CH~~ 88 (571)
T 1y0p_A 13 ECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHAS----HFPGEVACTSCHSAHEKSMVYCDSCHSF 88 (571)
T ss_dssp CGGGTSCTTCCCCCTTCHHHHHHHHHHHCCHHHHHTTSCCSSCCTTSC----SCCSCCCGGGTCCSSSCBCCGGGGTCCC
T ss_pred ChhhcCCCcccccccccccccchhhhhCcChhhcccccccccCCcccc----ccCCCCCccccCccccCCCccccccChh
Confidence 8999998653 47999998643211000 0000000 0112468999998643 379999976
Q ss_pred eEE
Q 026955 215 GMA 217 (230)
Q Consensus 215 G~~ 217 (230)
.+.
T Consensus 89 ~~~ 91 (571)
T 1y0p_A 89 DFN 91 (571)
T ss_dssp CCC
T ss_pred hcc
Confidence 444
No 30
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A
Probab=29.22 E-value=46 Score=27.11 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHhhhhhccCCCccccCCCCCCC
Q 026955 19 LHMEEVRRLRIQQRIKNAELGISKEEQDNELPSF 52 (230)
Q Consensus 19 ~~~e~v~~lr~~~~~~~~~~~~~~~~~~~~~~~~ 52 (230)
.+|||+||+=.+-.|- .++|..|+.|+.
T Consensus 56 ~v~~E~krII~~SeI~------kEdD~~WP~pd~ 83 (147)
T 1oo0_A 56 SVMEELKRIIIDSEIM------QEDDLPWPPPDR 83 (147)
T ss_dssp HHHHHHHHHHHHHTGG------GCCCTTSCCCCS
T ss_pred HHHHHHHHHHHHhccc------ccccccCCCCCC
Confidence 5899999997766552 246778888866
No 31
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=28.94 E-value=36 Score=26.70 Aligned_cols=31 Identities=29% Similarity=0.550 Sum_probs=20.1
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhh
Q 026955 55 FIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLEL 94 (230)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~ 94 (230)
-+.|||+||++.|.+--.+... -| ++|.+|-
T Consensus 12 TfSyLP~Lt~eqI~kQV~yll~--qG-------w~~~lE~ 42 (118)
T 3zxw_B 12 TFSYLPPLSDAQIARQIQYAID--QG-------YHPCVEF 42 (118)
T ss_dssp --CCSCCCCHHHHHHHHHHHHH--HT-------CEEEEEE
T ss_pred ccccCCCCCHHHHHHHHHHHHh--CC-------CeeEEEe
Confidence 4689999999999744333222 23 7888875
No 32
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.60 E-value=23 Score=24.99 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=10.5
Q ss_pred ccCCCCCcC-------ceeeCCCC
Q 026955 195 ERCSNCSGS-------GKVMCPTC 211 (230)
Q Consensus 195 ~~Cp~C~G~-------Gkv~C~tC 211 (230)
-.||.|.|. |...|+.|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~c 32 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQA 32 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTT
T ss_pred eECCCCCCcCeEeCCCCEEEcCCC
Confidence 356666653 55677777
No 33
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=28.21 E-value=20 Score=26.31 Aligned_cols=8 Identities=38% Similarity=1.057 Sum_probs=4.3
Q ss_pred ccCCCCcc
Q 026955 162 LACARCSN 169 (230)
Q Consensus 162 ~~C~~C~G 169 (230)
..|+.|.+
T Consensus 28 y~Cp~CG~ 35 (83)
T 1vq8_Z 28 HACPNCGE 35 (83)
T ss_dssp EECSSSCC
T ss_pred CcCCCCCC
Confidence 35666643
No 34
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=28.07 E-value=40 Score=26.01 Aligned_cols=31 Identities=26% Similarity=0.565 Sum_probs=21.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhhh
Q 026955 56 IPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELK 95 (230)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~~ 95 (230)
+.|||+||++.|..-..+... -| ++|.+|--
T Consensus 14 fSyLP~lt~eqI~kQI~Yll~--qG-------w~p~lEf~ 44 (109)
T 1rbl_M 14 FSYLPPLSDRQIAAQIEYMIE--QG-------FHPLIEFN 44 (109)
T ss_dssp TTTSSCCCHHHHHHHHHHHHH--HT-------CEEEEEEE
T ss_pred cccCCCCCHHHHHHHHHHHHH--CC-------CEEEEEec
Confidence 789999999999643333222 23 78888754
No 35
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=27.93 E-value=40 Score=26.06 Aligned_cols=30 Identities=23% Similarity=0.610 Sum_probs=20.6
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhh
Q 026955 56 IPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLEL 94 (230)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~ 94 (230)
+.|||+||++.|..-..+... -| ++|.+|-
T Consensus 16 fSyLP~lt~eqI~kQV~Yll~--qG-------w~p~iEf 45 (110)
T 1svd_M 16 FSYLPPMNAERIRAQIKYAIA--QG-------WSPGIEH 45 (110)
T ss_dssp TTTSCCCCHHHHHHHHHHHHH--TT-------CEEEEEE
T ss_pred cccCCCCCHHHHHHHHHHHHH--CC-------CeeEEEe
Confidence 789999999999643333222 23 7888875
No 36
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.39 E-value=26 Score=24.81 Aligned_cols=16 Identities=19% Similarity=0.634 Sum_probs=9.8
Q ss_pred cCCCCCcC-------ceeeCCCC
Q 026955 196 RCSNCSGS-------GKVMCPTC 211 (230)
Q Consensus 196 ~Cp~C~G~-------Gkv~C~tC 211 (230)
.||.|.|. |...|+.|
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~c 32 (69)
T 2pk7_A 10 ACPICKGPLKLSADKTELISKGA 32 (69)
T ss_dssp CCTTTCCCCEECTTSSEEEETTT
T ss_pred eCCCCCCcCeEeCCCCEEEcCCC
Confidence 46666553 45577777
No 37
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.78 E-value=27 Score=24.59 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=10.4
Q ss_pred ccCCCCCcC-------ceeeCCCC
Q 026955 195 ERCSNCSGS-------GKVMCPTC 211 (230)
Q Consensus 195 ~~Cp~C~G~-------Gkv~C~tC 211 (230)
-.||.|.|. |...|+.|
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c 34 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERL 34 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTT
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCC
Confidence 356666652 45577777
No 38
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=26.59 E-value=17 Score=37.60 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=6.9
Q ss_pred eCCCCCCeeEEe
Q 026955 207 MCPTCLCTGMAM 218 (230)
Q Consensus 207 ~C~tC~GtG~~~ 218 (230)
+|++|.|.|.+.
T Consensus 293 aCp~C~G~G~~~ 304 (972)
T 2r6f_A 293 ACPDCDGLGAKL 304 (972)
T ss_dssp BCTTTTSCCEEE
T ss_pred CCCCCcCccceE
Confidence 466666666554
No 39
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=26.45 E-value=43 Score=27.00 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=22.0
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhhh
Q 026955 55 FIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELK 95 (230)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~~ 95 (230)
-+.|||+||++.|.+=-.+... -| ++|.+|--
T Consensus 7 tfSyLP~ltd~qI~kQI~YlL~--qG-------w~~~iEf~ 38 (138)
T 4f0h_B 7 TFSFLPDLTDEQIKKQIDYMIS--KK-------LAIGIEYT 38 (138)
T ss_dssp TTTTSCCCCHHHHHHHHHHHHH--TT-------CEEEEEEE
T ss_pred ccccCCCCCHHHHHHHHHHHHh--CC-------CEEEEEeC
Confidence 4679999999999864443322 23 78888754
No 40
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=26.23 E-value=23 Score=21.60 Aligned_cols=6 Identities=50% Similarity=0.861 Sum_probs=5.2
Q ss_pred hHHHHH
Q 026955 20 HMEEVR 25 (230)
Q Consensus 20 ~~e~v~ 25 (230)
||||+|
T Consensus 9 LMEqIR 14 (31)
T 3m1f_V 9 LMEQIR 14 (31)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 899987
No 41
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=26.16 E-value=30 Score=22.60 Aligned_cols=16 Identities=25% Similarity=0.717 Sum_probs=10.6
Q ss_pred ccCCCCCcCcee--eCCC
Q 026955 195 ERCSNCSGSGKV--MCPT 210 (230)
Q Consensus 195 ~~Cp~C~G~Gkv--~C~t 210 (230)
..|..|+..|.. .|+.
T Consensus 34 ~~C~~Cg~~GH~~~~C~~ 51 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTE 51 (55)
T ss_dssp CBCTTTCCBSSCGGGCSS
T ss_pred CEeCCCCCcCCccCCCcC
Confidence 468888877765 4553
No 42
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=25.48 E-value=30 Score=24.54 Aligned_cols=17 Identities=24% Similarity=0.706 Sum_probs=10.2
Q ss_pred ccCCCCCcC-------ceeeCCCC
Q 026955 195 ERCSNCSGS-------GKVMCPTC 211 (230)
Q Consensus 195 ~~Cp~C~G~-------Gkv~C~tC 211 (230)
-.||.|.|. |...|+.|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~c 32 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNAD 32 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTT
T ss_pred eECCCCCCcCEEeCCCCEEEcCCC
Confidence 356666653 45577777
No 43
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=25.19 E-value=24 Score=26.83 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhhhccCCCccccCCCCCCCCCcCCCCCCCChhHHHHHHHH
Q 026955 21 MEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYAT 73 (230)
Q Consensus 21 ~e~v~~lr~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 73 (230)
||--|.-|+|++++..-..+.+-.++ -..+.+-||+-|.+.+.+-+||..
T Consensus 2 ~El~k~~~l~~~~~~i~~~l~~~~d~---~g~~~s~~F~~pv~~~~~pdY~~i 51 (126)
T 3mqm_A 2 MEVARAARLAQIFKEICDGIISYKDS---SRQALAAPLLNLPPKKKNADYYEK 51 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCBCT---TCCBTTGGGSSCCCGGGCTTHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCc---CCCChhHHhcCCCCcccCCCHHHH
Confidence 56677778888877653222211111 125678899999988888888874
No 44
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=25.07 E-value=31 Score=22.22 Aligned_cols=37 Identities=24% Similarity=0.695 Sum_probs=20.6
Q ss_pred ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee--eCCC
Q 026955 162 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCPT 210 (230)
Q Consensus 162 ~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv--~C~t 210 (230)
..|..|...|.+.. .|..+ ....|..|+..|.+ .|+.
T Consensus 7 ~~C~~Cg~~GH~a~-----~C~~~-------~~~~C~~Cg~~GH~~~~C~~ 45 (49)
T 2ec7_A 7 IRCWNCGKEGHSAR-----QCRAP-------RRQGCWKCGKTGHVMAKCPE 45 (49)
T ss_dssp CBCTTTCCBTCCTT-----TCCCS-------SCCSCSSSCCSSCCGGGCCS
T ss_pred CeeeecCCCCcChh-----hCcCC-------CCCeeCcCCCcCCccCCCcC
Confidence 35666776666532 12111 12468888888766 4653
No 45
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=24.31 E-value=28 Score=21.04 Aligned_cols=33 Identities=24% Similarity=0.676 Sum_probs=19.0
Q ss_pred cCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee--eCC
Q 026955 163 ACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCP 209 (230)
Q Consensus 163 ~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv--~C~ 209 (230)
.|..|...|.+.. .+. ....|..|...|.+ .|+
T Consensus 2 ~C~~Cg~~GH~~~-----~C~---------~~~~C~~Cg~~GH~a~~C~ 36 (37)
T 2bl6_A 2 TCYNCGKPGHLSS-----QCR---------APKVCFKCKQPGHFSKQCR 36 (37)
T ss_dssp CBSSSCCSSCCTT-----TSS---------CBTTCSSCCCTTGGGGTTC
T ss_pred cccccCCCCcchh-----hCc---------CcCeEccCCCcCCccCcCc
Confidence 4667777776532 111 12468888887765 454
No 46
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=23.61 E-value=59 Score=26.71 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=28.9
Q ss_pred eeccccccccc-ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee----eCCCCCC
Q 026955 151 KRCKYCLGTGY-LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV----MCPTCLC 213 (230)
Q Consensus 151 k~C~~C~GtG~-~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv----~C~tC~G 213 (230)
..|..|+..|. +-|..|.. ++-. .|..++........-.|+.|...++. .|+++..
T Consensus 8 ~~C~~C~~~g~ll~Cd~C~~-~~H~------~Cl~p~l~~~p~~~W~C~~C~~~~~~~~~~~c~~~~~ 68 (207)
T 3u5n_A 8 DWCAVCQNGGDLLCCEKCPK-VFHL------TCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNLQH 68 (207)
T ss_dssp SSBTTTCCCEEEEECSSSSC-EECT------TTSSSCCSSCCSSCCCCTTTSCSSSCSSCCSCC----
T ss_pred CCCCCCCCCCceEEcCCCCC-ccCC------ccCCCCCCCCCCCCEEeCceeCccccccccccccccc
Confidence 36888876665 57777773 3321 34332211011223469999988764 4776653
No 47
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=23.32 E-value=54 Score=26.43 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=21.4
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhhh
Q 026955 55 FIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELK 95 (230)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~~ 95 (230)
-+.|||+||++.|.+-..+... -| ++|.+|--
T Consensus 7 tfSyLP~ltdeqI~kQI~YlL~--qG-------w~p~lE~~ 38 (139)
T 1bxn_I 7 TFSFLPELTDEQITKQLEYCLN--QG-------WAVGLEYT 38 (139)
T ss_dssp BTTTSSCCCHHHHHHHHHHHHH--HT-------CEEEEEEE
T ss_pred eeccCCCCCHHHHHHHHHHHHH--CC-------CeEEEEec
Confidence 3689999999999644333222 23 78888754
No 48
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=23.31 E-value=54 Score=26.04 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=21.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhhh
Q 026955 56 IPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELK 95 (230)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~~ 95 (230)
+.|||+||++.|..-..+... -| ++|.+|--
T Consensus 15 fSyLP~lt~eqI~kQI~Yll~--qG-------w~p~lEf~ 45 (128)
T 1wdd_S 15 LSYLPPLTVEDLLKQIEYLLR--SK-------WVPCLEFS 45 (128)
T ss_dssp TTTSSCCCHHHHHHHHHHHHH--TT-------CEEEEEEE
T ss_pred cccCCCCCHHHHHHHHHHHHH--CC-------CeeeEEec
Confidence 789999999999744333222 23 78888764
No 49
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=23.12 E-value=54 Score=26.38 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=21.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhhh
Q 026955 56 IPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELK 95 (230)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~~ 95 (230)
+.|||+||++.|.+-..+... -| ++|.+|--
T Consensus 8 fSyLP~ltdeqI~kQI~Yll~--qG-------w~p~iEf~ 38 (138)
T 1bwv_S 8 FSFLPDLTDEQIKKQIDYMIS--KK-------LAIGIEYT 38 (138)
T ss_dssp TTTSCCCCHHHHHHHHHHHHH--TT-------CEEEEEEE
T ss_pred eccCCCCCHHHHHHHHHHHHH--CC-------CeeeEEec
Confidence 689999999999643333222 23 78888754
No 50
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=22.45 E-value=37 Score=22.97 Aligned_cols=18 Identities=22% Similarity=0.905 Sum_probs=13.4
Q ss_pred cccCCCCCcC-----ceeeCC--CC
Q 026955 194 TERCSNCSGS-----GKVMCP--TC 211 (230)
Q Consensus 194 ~~~Cp~C~G~-----Gkv~C~--tC 211 (230)
--.||.|+|. |...|+ .|
T Consensus 10 iL~CP~c~~~L~~~~~~L~C~~~~c 34 (56)
T 2kpi_A 10 ILACPACHAPLEERDAELICTGQDC 34 (56)
T ss_dssp SCCCSSSCSCEEEETTEEEECSSSC
T ss_pred heeCCCCCCcceecCCEEEcCCcCC
Confidence 3478888886 667888 78
No 51
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=21.92 E-value=22 Score=26.90 Aligned_cols=44 Identities=20% Similarity=0.538 Sum_probs=22.2
Q ss_pred eeeeecceehhh-hhhhhhhccceeecceeecccc----cccccccCCCCcc
Q 026955 123 VASFSGGAVGVI-SALMIVEVNNVKQQEQKRCKYC----LGTGYLACARCSN 169 (230)
Q Consensus 123 ~asf~Gg~vGv~-s~l~vve~n~vk~~~~k~C~~C----~GtG~~~C~~C~G 169 (230)
+..++|..||.- ....++.+|++... .|..| ...|.+.|+.|+.
T Consensus 18 iCqiCGD~VG~~~~Ge~FVAC~eC~FP---vCrpCyEYErkeG~q~CpqCkt 66 (93)
T 1weo_A 18 FCEICGDQIGLTVEGDLFVACNECGFP---ACRPCYEYERREGTQNCPQCKT 66 (93)
T ss_dssp BCSSSCCBCCBCSSSSBCCSCSSSCCC---CCHHHHHHHHHTSCSSCTTTCC
T ss_pred ccccccCccccCCCCCEEEeeeccCCh---hhHHHHHHHHhccCccccccCC
Confidence 456788877732 12234445555333 44444 2344455666654
No 52
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=21.42 E-value=71 Score=23.49 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=13.5
Q ss_pred CceeeCCCCCCeeEEeceecCCCCC
Q 026955 203 SGKVMCPTCLCTGMAMASEHDPRID 227 (230)
Q Consensus 203 ~Gkv~C~tC~GtG~~~~~ehD~~id 227 (230)
.|.+.|..|.-.=....+..|-.||
T Consensus 45 ~g~l~C~~Cg~~~~~~i~~L~epiD 69 (85)
T 1wii_A 45 TGVISCTVCLEEFQTPITYLSEPVD 69 (85)
T ss_dssp EEEEEESSSCCEEEEECCSSCCTTH
T ss_pred EEEEEcccCCCeEEeccCccCcchh
Confidence 3566899996544333333333333
No 53
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=21.25 E-value=41 Score=34.78 Aligned_cols=21 Identities=33% Similarity=0.907 Sum_probs=15.5
Q ss_pred cCCCCCcCcee------------eCCCCCCeeE
Q 026955 196 RCSNCSGSGKV------------MCPTCLCTGM 216 (230)
Q Consensus 196 ~Cp~C~G~Gkv------------~C~tC~GtG~ 216 (230)
+|+.|.|.|.+ .|..|+|..+
T Consensus 755 rC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~ 787 (972)
T 2r6f_A 755 RCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRY 787 (972)
T ss_dssp BCTTTTTCSEEEECCSSSCCEEEECTTTTTCCB
T ss_pred cccccccccceeeehhccccccccccccccccc
Confidence 68888888775 5888887643
No 54
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=21.17 E-value=28 Score=33.53 Aligned_cols=13 Identities=46% Similarity=1.081 Sum_probs=10.2
Q ss_pred cccCCCCCcCcee
Q 026955 194 TERCSNCSGSGKV 206 (230)
Q Consensus 194 ~~~Cp~C~G~Gkv 206 (230)
..+||+|+|+|++
T Consensus 408 ~~~Cp~C~G~G~v 420 (517)
T 2bx2_L 408 HHVCPRCSGTGTV 420 (517)
T ss_dssp CCCCSSSSSSSCC
T ss_pred cCcCCCcCCceeE
Confidence 4579999998876
No 55
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=20.39 E-value=87 Score=22.26 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=23.7
Q ss_pred CcccceeEEeeeccccccccCCeeeeeecce
Q 026955 100 GTSYADFIQSVHLPMQLSQVDPIVASFSGGA 130 (230)
Q Consensus 100 g~~~~~~~~~~~lp~qls~~d~I~asf~Gg~ 130 (230)
.++|-.|.|++.||..+ -.+.|-|.|.-|.
T Consensus 60 er~~g~f~r~~~LP~~v-d~~~i~A~~~~Gv 89 (100)
T 3gla_A 60 ERRYGSFHRRFALPDSA-DADGITAAGRNGV 89 (100)
T ss_dssp CCCCEEEEEEEECCTTB-CTTSCEEEEETTE
T ss_pred eecceEEEEEEECCCCc-ChHHeEEEEeCCE
Confidence 34566899999999985 5667889998774
Done!