Query 026955
Match_columns 230
No_of_seqs 167 out of 1126
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 04:00:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026955.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026955hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1exka_ g.54.1.1 (A:) Cysteine 99.3 1.7E-12 1.2E-16 94.2 4.5 66 144-220 5-79 (79)
2 d1nlta3 g.54.1.1 (A:139-212) M 99.1 1E-11 7.3E-16 89.3 3.5 62 150-218 2-73 (74)
3 d1exka_ g.54.1.1 (A:) Cysteine 97.8 4.7E-06 3.4E-10 59.4 2.4 43 161-219 11-64 (79)
4 d1nlta3 g.54.1.1 (A:139-212) M 97.7 3.6E-06 2.6E-10 59.5 0.5 41 162-219 3-58 (74)
5 d1m1qa_ a.138.1.3 (A:) Flavocy 96.9 3.8E-05 2.8E-09 54.8 -1.3 61 152-219 13-85 (90)
6 d1m1qa_ a.138.1.3 (A:) Flavocy 85.5 0.093 6.8E-06 36.3 0.5 37 151-206 32-83 (90)
7 d2fiya1 e.59.1.1 (A:19-308) Fd 83.5 0.16 1.1E-05 43.5 1.2 36 194-229 204-259 (290)
8 d1dl6a_ g.41.3.1 (A:) Transcri 78.5 1.1 7.8E-05 29.5 3.8 25 191-218 8-40 (58)
9 d2ey4e1 g.41.16.1 (E:4-55) Rib 57.5 1.9 0.00014 27.9 1.4 32 195-229 3-35 (52)
10 d1pfta_ g.41.3.1 (A:) Transcri 56.1 3.1 0.00022 26.3 2.2 18 194-211 5-30 (50)
11 d2apob1 g.41.16.1 (B:403-457) 55.4 2.3 0.00016 27.9 1.5 34 194-230 4-38 (55)
12 d1svdm1 d.73.1.1 (M:3-110) Rib 55.1 6 0.00044 28.9 4.0 36 49-93 2-42 (108)
13 d1p9ra_ c.37.1.11 (A:) Extrace 47.9 3.8 0.00027 35.2 2.2 8 150-157 295-302 (401)
14 d2exfa1 g.40.1.1 (A:12-53) HIV 44.7 4 0.00029 24.7 1.3 36 162-209 2-39 (42)
15 d1wiia_ g.41.3.4 (A:) Hypothet 38.2 9.9 0.00072 26.6 2.7 36 192-227 21-69 (85)
16 d1p9ra_ c.37.1.11 (A:) Extrace 37.5 5.6 0.00041 34.1 1.5 24 62-86 142-165 (401)
17 d1bxni_ d.73.1.1 (I:) Ribulose 36.8 11 0.00078 28.2 2.9 31 55-94 7-37 (129)
18 d1rbli_ d.73.1.1 (I:) Ribulose 30.4 16 0.0012 26.4 2.9 31 55-94 13-43 (109)
19 d1bwvs_ d.73.1.1 (S:) Ribulose 28.2 18 0.0013 27.3 2.9 31 55-94 7-37 (138)
20 d1wdds_ d.73.1.1 (S:) Ribulose 27.2 20 0.0014 26.5 2.9 31 56-95 15-45 (122)
21 d1rk8b_ d.232.1.1 (B:) Mago na 27.0 24 0.0018 26.6 3.5 28 19-52 53-80 (141)
22 d1gk8i_ d.73.1.1 (I:) Ribulose 26.5 21 0.0015 26.6 2.9 31 55-94 14-44 (126)
23 d1qo8a1 a.138.1.3 (A:2-102) Fl 25.6 2.8 0.0002 29.3 -2.2 61 152-216 13-86 (101)
24 d2ctda1 g.37.1.1 (A:8-60) Zinc 23.1 18 0.0013 23.0 1.7 11 204-214 26-36 (53)
25 d2cora2 g.39.1.3 (A:8-42) Pinc 21.8 15 0.0011 21.6 1.0 13 157-169 4-16 (35)
26 d2akla2 g.41.3.5 (A:3-40) Hypo 20.8 18 0.0013 21.6 1.3 16 196-211 5-26 (38)
27 d1ee8a3 g.39.1.8 (A:211-266) D 20.7 38 0.0028 21.2 3.0 8 162-169 26-33 (56)
28 d1weoa_ g.44.1.1 (A:) Cellulos 20.2 11 0.00082 26.6 0.2 53 114-169 9-66 (93)
No 1
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
Probab=99.25 E-value=1.7e-12 Score=94.25 Aligned_cols=66 Identities=23% Similarity=0.634 Sum_probs=54.0
Q ss_pred ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955 144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT 214 (230)
Q Consensus 144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt 214 (230)
+++.+....|+.|+|+|+ ..|+.|+|+|++.... | .++..++|++|+|+|++ +|++|.|+
T Consensus 5 ~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~--------g---~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 73 (79)
T d1exka_ 5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ--------G---FFAVQQTCPHCQGRGTLIKDPCNKCHGH 73 (79)
T ss_dssp SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE--------T---TEEEEEECTTTTTSSEECSSBCGGGTTS
T ss_pred EEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEec--------c---cceeeEECcccCcceeECCCCCCCCCCc
Confidence 456678889999999985 5799999999886432 2 23456799999999998 89999999
Q ss_pred eEEece
Q 026955 215 GMAMAS 220 (230)
Q Consensus 215 G~~~~~ 220 (230)
|.+.++
T Consensus 74 G~v~kt 79 (79)
T d1exka_ 74 GRVERS 79 (79)
T ss_dssp SEEECC
T ss_pred eEeecC
Confidence 998764
No 2
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.13 E-value=1e-11 Score=89.26 Aligned_cols=62 Identities=26% Similarity=0.550 Sum_probs=49.8
Q ss_pred eeeccccccccc-----ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee-----eCCCCCCeeEEe
Q 026955 150 QKRCKYCLGTGY-----LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----MCPTCLCTGMAM 218 (230)
Q Consensus 150 ~k~C~~C~GtG~-----~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv-----~C~tC~GtG~~~ 218 (230)
...|+.|+|+|+ ..|+.|+|+|++.... ..+++ .++...+|+.|.|+|++ +|+.|+|+|.+.
T Consensus 2 ~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~----~~g~~---~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~ 73 (74)
T d1nlta3 2 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTR----QMGPM---IQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVEN 73 (74)
T ss_dssp EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEE----ESSSE---EEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred ccCCcCCcccccCCCCCCCCCCCcceeeeeEEE----EecCc---EEEEEEECccCccceEEeCCCCCCCCCCCeeEeC
Confidence 468999999995 5799999999997642 23333 34566799999999986 699999999765
No 3
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
Probab=97.76 E-value=4.7e-06 Score=59.42 Aligned_cols=43 Identities=30% Similarity=0.767 Sum_probs=34.4
Q ss_pred cccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee-----------eCCCCCCeeEEec
Q 026955 161 YLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV-----------MCPTCLCTGMAMA 219 (230)
Q Consensus 161 ~~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv-----------~C~tC~GtG~~~~ 219 (230)
+..|+.|+|+|.... ....+|+.|+|+|++ +|+.|+|+|++..
T Consensus 11 ~~~C~~C~G~G~~~g----------------~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~ 64 (79)
T d1exka_ 11 LEECDVCHGSGAKPG----------------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK 64 (79)
T ss_dssp EEECGGGTTTSBCSS----------------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS
T ss_pred eccCCCCcCcccCCC----------------ccceeCCCccceeEEEEecccceeeEECcccCcceeECC
Confidence 468999999995421 124689999999976 6999999999863
No 4
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.67 E-value=3.6e-06 Score=59.54 Aligned_cols=41 Identities=27% Similarity=0.745 Sum_probs=32.4
Q ss_pred ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---------------eCCCCCCeeEEec
Q 026955 162 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---------------MCPTCLCTGMAMA 219 (230)
Q Consensus 162 ~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---------------~C~tC~GtG~~~~ 219 (230)
+.|+.|+|+|... + ...+|+.|+|+|++ +|+.|.|+|++..
T Consensus 3 v~C~~C~G~G~~~-----------~------~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~ 58 (74)
T d1nlta3 3 ILCKECEGRGGKK-----------G------AVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID 58 (74)
T ss_dssp EECTTTTTCSBST-----------T------TCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC
T ss_pred cCCcCCcccccCC-----------C------CCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeC
Confidence 5799999999532 1 13479999999964 5999999998764
No 5
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}
Probab=96.91 E-value=3.8e-05 Score=54.75 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=43.9
Q ss_pred eccccccccc---------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEec
Q 026955 152 RCKYCLGTGY---------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMA 219 (230)
Q Consensus 152 ~C~~C~GtG~---------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~ 219 (230)
.|..|+|+|. ..|..|+|+|...... ....+ ....-..|+.|.|.|+. .|.+|++.|+..+
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~--~~~h~-----~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~~~ 85 (90)
T d1m1qa_ 13 GCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAV--HKPHD-----GNLVCADCHAVHDMNVGQKPTCESCHDDGRTSA 85 (90)
T ss_dssp CGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTT--TGGGT-----TTCCGGGTCCTTTSBTTCCCCSTTTCSSCCCHH
T ss_pred CCCCcCCCCccccCCCCCCCcCcccCCCceeEeec--ccccc-----CccccccCccccCCCCcCCCccccccCCCcccc
Confidence 6999999884 3699999999764321 11111 12356789999998875 8999999997644
No 6
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}
Probab=85.51 E-value=0.093 Score=36.28 Aligned_cols=37 Identities=19% Similarity=0.558 Sum_probs=24.6
Q ss_pred eeccccccccc---------------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee
Q 026955 151 KRCKYCLGTGY---------------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV 206 (230)
Q Consensus 151 k~C~~C~GtG~---------------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv 206 (230)
..|..|+|+|. ..|..|+|.|.. ....|..|.+.|+.
T Consensus 32 ~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~-------------------~~~~C~~CH~~gr~ 83 (90)
T d1m1qa_ 32 AQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVG-------------------QKPTCESCHDDGRT 83 (90)
T ss_dssp HHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTT-------------------CCCCSTTTCSSCCC
T ss_pred CcCcccCCCceeEeeccccccCccccccCccccCCCCc-------------------CCCccccccCCCcc
Confidence 46999999884 245555554421 23579999998874
No 7
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=83.55 E-value=0.16 Score=43.48 Aligned_cols=36 Identities=28% Similarity=0.545 Sum_probs=29.2
Q ss_pred cccCCCCCcCce-------------------e-eCCCCCCeeEEeceecCCCCCCC
Q 026955 194 TERCSNCSGSGK-------------------V-MCPTCLCTGMAMASEHDPRIDPF 229 (230)
Q Consensus 194 ~~~Cp~C~G~Gk-------------------v-~C~tC~GtG~~~~~ehD~~idpf 229 (230)
+.+|+.|+-+.. + .|.+|++.=++.-.+.|+.+||+
T Consensus 204 R~~C~~Cg~~~~~~~~~~~~~~~~~~~~~~r~e~C~~C~~Y~K~~~~~~~~~~~p~ 259 (290)
T d2fiya1 204 RIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLKQFYLEFDRHADAL 259 (290)
T ss_dssp TTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEEEEETTTCTTCCHH
T ss_pred cccCCCCCCCCCcceEEEecCCCcccccceEEEEcCCcCCeEEEeecccCCccCcc
Confidence 468999976532 1 59999999988888999999986
No 8
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.50 E-value=1.1 Score=29.49 Aligned_cols=25 Identities=32% Similarity=0.880 Sum_probs=17.9
Q ss_pred CCCcccCCCCCcC--------ceeeCCCCCCeeEEe
Q 026955 191 APKTERCSNCSGS--------GKVMCPTCLCTGMAM 218 (230)
Q Consensus 191 ~~~~~~Cp~C~G~--------Gkv~C~tC~GtG~~~ 218 (230)
...+.+||.|++. |...|..| |.+.
T Consensus 8 ~~~~~~Cp~Cgs~~ii~D~~~Ge~vC~~C---G~Vl 40 (58)
T d1dl6a_ 8 ALPRVTCPNHPDAILVEDYRAGDMICPEC---GLVV 40 (58)
T ss_dssp CCSCCSBTTBSSSCCEECSSSCCEECTTT---CCEE
T ss_pred cccccCCCCCCCCCEEEECCCCcEecccC---CCEe
Confidence 3456789999876 44589999 5554
No 9
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=57.51 E-value=1.9 Score=27.92 Aligned_cols=32 Identities=28% Similarity=0.668 Sum_probs=20.6
Q ss_pred ccCCCCCcCcee-eCCCCCCeeEEeceecCCCCCCC
Q 026955 195 ERCSNCSGSGKV-MCPTCLCTGMAMASEHDPRIDPF 229 (230)
Q Consensus 195 ~~Cp~C~G~Gkv-~C~tC~GtG~~~~~ehD~~idpf 229 (230)
+.|++|+--... .||.|.+.-. +-|=+++.|=
T Consensus 3 rkC~~C~~YTL~~~CP~CG~~t~---~a~ParfSPe 35 (52)
T d2ey4e1 3 RKCPKCGRYTLKEVCPVCGEKTK---VAHPPRFSPE 35 (52)
T ss_dssp EECTTTCCEESSSBCTTTCCBCE---ESSCCCCCTT
T ss_pred ccCCcccceeccccCcCCCCccc---ccCCCCCCCC
Confidence 468888775543 7888866443 4466666653
No 10
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=56.10 E-value=3.1 Score=26.26 Aligned_cols=18 Identities=28% Similarity=1.108 Sum_probs=12.5
Q ss_pred cccCCCCCcC--------ceeeCCCC
Q 026955 194 TERCSNCSGS--------GKVMCPTC 211 (230)
Q Consensus 194 ~~~Cp~C~G~--------Gkv~C~tC 211 (230)
...||.|++. |...|..|
T Consensus 5 ~~~Cp~Cgs~~iv~D~~~Ge~vC~~C 30 (50)
T d1pfta_ 5 QKVCPACESAELIYDPERGEIVCAKC 30 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSS
T ss_pred cccCcCCCCCcEEEECCCCeEecccC
Confidence 4567777654 55688888
No 11
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=55.44 E-value=2.3 Score=27.86 Aligned_cols=34 Identities=21% Similarity=0.491 Sum_probs=23.2
Q ss_pred cccCCCCCcCcee-eCCCCCCeeEEeceecCCCCCCCC
Q 026955 194 TERCSNCSGSGKV-MCPTCLCTGMAMASEHDPRIDPFD 230 (230)
Q Consensus 194 ~~~Cp~C~G~Gkv-~C~tC~GtG~~~~~ehD~~idpf~ 230 (230)
-+.|+.|+--+.. .||.|.|. ..+-|-+++.|=|
T Consensus 4 lrkC~~C~~YTL~~~CP~CG~~---t~~a~P~rfSPeD 38 (55)
T d2apob1 4 MKKCPKCGLYTLKEICPKCGEK---TVIPKPPKFSLED 38 (55)
T ss_dssp CEECTTTCCEESSSBCSSSCSB---CBCCCCCCCCTTC
T ss_pred eeeCCcccceeccccCcCCCCc---cCccCCCCCCCCc
Confidence 3579999886543 89999664 4456777776643
No 12
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=55.07 E-value=6 Score=28.85 Aligned_cols=36 Identities=19% Similarity=0.573 Sum_probs=22.7
Q ss_pred CCCCCCc-----CCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchh
Q 026955 49 LPSFPSF-----IPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLE 93 (230)
Q Consensus 49 ~~~~~s~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~ 93 (230)
|-+|++. +.|||+||++.|.+=-.+... -| ++|.+|
T Consensus 2 ~~~~~~~~~~eTfSyLP~Ltde~I~~QV~yll~--qG-------w~~~~E 42 (108)
T d1svdm1 2 MQDYKQSLKYETFSYLPPMNAERIRAQIKYAIA--QG-------WSPGIE 42 (108)
T ss_dssp CCCCCCCCCCSTTTTSCCCCHHHHHHHHHHHHH--TT-------CEEEEE
T ss_pred cccccccccccccccCCCCCHHHHHHHHHHHHH--CC-------CEeeEe
Confidence 4455554 489999999998643332221 22 778887
No 13
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=47.92 E-value=3.8 Score=35.19 Aligned_cols=8 Identities=25% Similarity=0.704 Sum_probs=5.7
Q ss_pred eeeccccc
Q 026955 150 QKRCKYCL 157 (230)
Q Consensus 150 ~k~C~~C~ 157 (230)
.+.|+.|+
T Consensus 295 ~~lCp~Ck 302 (401)
T d1p9ra_ 295 RTLCPDCK 302 (401)
T ss_dssp EEECTTTC
T ss_pred hhhCCCcC
Confidence 46788884
No 14
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}
Probab=44.71 E-value=4 Score=24.68 Aligned_cols=36 Identities=19% Similarity=0.588 Sum_probs=20.7
Q ss_pred ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee--eCC
Q 026955 162 LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV--MCP 209 (230)
Q Consensus 162 ~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv--~C~ 209 (230)
+.|..|...|.... .|..+ ...+|..|+..|.+ .||
T Consensus 2 i~C~~Cg~~GH~~~-----~Cp~~-------~~~~C~~Cg~~GH~~~~Cp 39 (42)
T d2exfa1 2 VKCFNCGKEGHTAR-----NCRAP-------RKKGCWKCGKEGHQMKDCT 39 (42)
T ss_dssp CCCTTTCCSSSCTT-----TCSSC-------CCSSCSSSCCSSSCTTTCC
T ss_pred CccccCCCcCcCcc-----cCcCC-------CcCccccCCCCCeecccCC
Confidence 45777777776532 22111 12468888888765 454
No 15
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.16 E-value=9.9 Score=26.57 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCcccCCCCC-------------cCceeeCCCCCCeeEEeceecCCCCC
Q 026955 192 PKTERCSNCS-------------GSGKVMCPTCLCTGMAMASEHDPRID 227 (230)
Q Consensus 192 ~~~~~Cp~C~-------------G~Gkv~C~tC~GtG~~~~~ehD~~id 227 (230)
.+...||.|+ |.|.+.|..|.-.-....+..|-.||
T Consensus 21 ~t~F~CPfCnh~~sV~vk~dkk~~~g~l~C~vCg~~~~~~i~~L~epiD 69 (85)
T d1wiia_ 21 ETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVD 69 (85)
T ss_dssp SSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSCCTTH
T ss_pred CceEcCCCCCCCCeEEEEEEecCCEEEEEEecCCCeEEecccccCccHh
Confidence 3456788887 44667999995433333344454444
No 16
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=37.49 E-value=5.6 Score=34.06 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=10.6
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhcc
Q 026955 62 LSAANLKVYYATCFSLIAGVILFGG 86 (230)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~g~ 86 (230)
++++.+..+-.. ...-.|+|+|-|
T Consensus 142 ~~~~~~~~l~~l-~~~~~GliLvtG 165 (401)
T d1p9ra_ 142 MTAHNHDNFRRL-IKRPHGIILVTG 165 (401)
T ss_dssp CCHHHHHHHHHH-HTSSSEEEEEEC
T ss_pred ccHHHHHHHHHH-HhhhhceEEEEc
Confidence 445555544332 222445555444
No 17
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=36.78 E-value=11 Score=28.23 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=21.5
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhh
Q 026955 55 FIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLEL 94 (230)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~ 94 (230)
-+.|||+||++.|.+-..+... -| ++|.+|-
T Consensus 7 tfSyLP~Ltd~~I~~QV~yll~--qG-------~~i~iE~ 37 (129)
T d1bxni_ 7 TFSFLPELTDEQITKQLEYCLN--QG-------WAVGLEY 37 (129)
T ss_dssp BTTTSSCCCHHHHHHHHHHHHH--HT-------CEEEEEE
T ss_pred eeccCCCCCHHHHHHHHHHHHH--CC-------CEeeEEE
Confidence 4689999999999865444322 23 6777763
No 18
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=30.42 E-value=16 Score=26.41 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=20.8
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhh
Q 026955 55 FIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLEL 94 (230)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~ 94 (230)
-+.|||+||++.|.+=-.+..+ -| ++|.+|-
T Consensus 13 TfSyLP~Ltd~~I~~QV~yll~--qG-------w~i~iE~ 43 (109)
T d1rbli_ 13 TFSYLPPLSDRQIAAQIEYMIE--QG-------FHPLIEF 43 (109)
T ss_dssp TTTTSSCCCHHHHHHHHHHHHH--HT-------CEEEEEE
T ss_pred ccccCCCCCHHHHHHHHHHHHh--CC-------CceeEEE
Confidence 4689999999999754333322 23 7777773
No 19
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=28.16 E-value=18 Score=27.29 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=20.7
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhh
Q 026955 55 FIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLEL 94 (230)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~ 94 (230)
-+.|||+||++.|.+=-.+... -| ++|.+|-
T Consensus 7 tfSyLP~LtdeqI~~QV~yll~--qG-------w~~~iE~ 37 (138)
T d1bwvs_ 7 TFSFLPDLTDEQIKKQIDYMIS--KK-------LAIGIEY 37 (138)
T ss_dssp TTTTSCCCCHHHHHHHHHHHHH--TT-------CEEEEEE
T ss_pred eeccCCCCCHHHHHHHHHHHHc--CC-------CEeeeEe
Confidence 4689999999999754333222 12 6777764
No 20
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=27.20 E-value=20 Score=26.49 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=22.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhhh
Q 026955 56 IPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELK 95 (230)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~~ 95 (230)
+.|||+||++.|.+=-.+... =| ++|.+|..
T Consensus 15 fSyLP~ltd~qI~~QI~yll~--qG-------w~p~lEf~ 45 (122)
T d1wdds_ 15 LSYLPPLTVEDLLKQIEYLLR--SK-------WVPCLEFS 45 (122)
T ss_dssp TTTSSCCCHHHHHHHHHHHHH--TT-------CEEEEEEE
T ss_pred eccCCCCCHHHHHHHHHHHHH--CC-------CeeeEEec
Confidence 589999999999864443322 23 88999864
No 21
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=27.03 E-value=24 Score=26.58 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHhhhhhccCCCccccCCCCCCC
Q 026955 19 LHMEEVRRLRIQQRIKNAELGISKEEQDNELPSF 52 (230)
Q Consensus 19 ~~~e~v~~lr~~~~~~~~~~~~~~~~~~~~~~~~ 52 (230)
.+|+|+||+=.+--|-. ++|..|+.|+-
T Consensus 53 ~v~~EikrII~~SeI~k------edD~~WP~pdr 80 (141)
T d1rk8b_ 53 SVMEELKRIIIDSEIMQ------EDDLPWPPPDR 80 (141)
T ss_dssp HHHHHHHHHHHHHTGGG------CCCTTSCCCCS
T ss_pred HHHHHHHHHHHHHhccc------cccccCCCCCC
Confidence 58999999866544422 46677888764
No 22
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=26.48 E-value=21 Score=26.59 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=22.1
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHhhhccccccchhh
Q 026955 55 FIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLEL 94 (230)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~~~~ 94 (230)
-+.|||+||++.|..--.+... -| ++|.+|.
T Consensus 14 TfSyLPpLtdeqI~kQI~Y~i~--~G-------W~p~iEf 44 (126)
T d1gk8i_ 14 TFSYLPPLTDEQIAAQVDYIVA--NG-------WIPCLEF 44 (126)
T ss_dssp TTTTSSCCCHHHHHHHHHHHHH--TT-------CEEEEEE
T ss_pred ecccCCCCCHHHHHHHHHHHHh--cC-------CceeeEe
Confidence 3689999999999854443222 23 8899986
No 23
>d1qo8a1 a.138.1.3 (A:2-102) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella frigidimarina [TaxId: 56812]}
Probab=25.64 E-value=2.8 Score=29.29 Aligned_cols=61 Identities=15% Similarity=0.415 Sum_probs=35.6
Q ss_pred eccccccccc----------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeE
Q 026955 152 RCKYCLGTGY----------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGM 216 (230)
Q Consensus 152 ~C~~C~GtG~----------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~ 216 (230)
.|..|++.+. ..|..|+|.......... ..+.-. .-.....|..|.+..+. .|..|+-.++
T Consensus 13 ~C~~CH~~~~~~~~~~~~~~~~C~~CH~~~~~~~~~~~-~~~~h~---~~~~~~~C~~CH~~H~~~~~~C~~CH~~~~ 86 (101)
T d1qo8a1 13 SCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKL-QFDPHN---SHLGDINCTSCHKGHEEPKFYCNECHSFDI 86 (101)
T ss_dssp CGGGTSCSSCCCCTTCHHHHHHHHHHHCCHHHHCCSSS-SSCTTS---STTCSCCGGGTSCSSSCCCCGGGGTCCCCC
T ss_pred ChhhhcCCcccCccccccccchhhhccCchhhhccccc-cCCccc---ccCCCCchhhhccCCCCCCccccccccCCC
Confidence 6889987643 479999988765432110 000000 01123579999986554 6888886443
No 24
>d2ctda1 g.37.1.1 (A:8-60) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.09 E-value=18 Score=23.02 Aligned_cols=11 Identities=55% Similarity=1.232 Sum_probs=5.8
Q ss_pred ceeeCCCCCCe
Q 026955 204 GKVMCPTCLCT 214 (230)
Q Consensus 204 Gkv~C~tC~Gt 214 (230)
|.+.||+|..-
T Consensus 26 G~v~CPtC~~V 36 (53)
T d2ctda1 26 GSVSCPTCQAV 36 (53)
T ss_dssp SCEECTTTCSC
T ss_pred CcccCCccchh
Confidence 45555555543
No 25
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.77 E-value=15 Score=21.62 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=10.4
Q ss_pred cccccccCCCCcc
Q 026955 157 LGTGYLACARCSN 169 (230)
Q Consensus 157 ~GtG~~~C~~C~G 169 (230)
.|.|+..|..|++
T Consensus 4 ~glGk~vC~KCh~ 16 (35)
T d2cora2 4 RGLGKYICQKCHA 16 (35)
T ss_dssp CCCCCCBCTTTCC
T ss_pred cchhhHHHHHHHh
Confidence 4778888888886
No 26
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.82 E-value=18 Score=21.63 Aligned_cols=16 Identities=31% Similarity=1.186 Sum_probs=10.0
Q ss_pred cCCCCCcC------ceeeCCCC
Q 026955 196 RCSNCSGS------GKVMCPTC 211 (230)
Q Consensus 196 ~Cp~C~G~------Gkv~C~tC 211 (230)
.||.|++. +...||.|
T Consensus 5 ~CP~C~seytYedg~l~vCPeC 26 (38)
T d2akla2 5 PCPQCNSEYTYEDGALLVCPEC 26 (38)
T ss_dssp CCTTTCCCCCEECSSSEEETTT
T ss_pred cCCCCCCcceEcCCCEEECCcc
Confidence 57777764 22367777
No 27
>d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=20.75 E-value=38 Score=21.17 Aligned_cols=8 Identities=38% Similarity=1.153 Sum_probs=4.3
Q ss_pred ccCCCCcc
Q 026955 162 LACARCSN 169 (230)
Q Consensus 162 ~~C~~C~G 169 (230)
..|+.|+.
T Consensus 26 ~~C~~C~~ 33 (56)
T d1ee8a3 26 LPCPACGR 33 (56)
T ss_dssp SBCTTTCC
T ss_pred cccccCCc
Confidence 35666644
No 28
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.15 E-value=11 Score=26.63 Aligned_cols=53 Identities=21% Similarity=0.486 Sum_probs=27.2
Q ss_pred ccccccCCeeeeeecceehhh-hhhhhhhccceeecceeecccc----cccccccCCCCcc
Q 026955 114 MQLSQVDPIVASFSGGAVGVI-SALMIVEVNNVKQQEQKRCKYC----LGTGYLACARCSN 169 (230)
Q Consensus 114 ~qls~~d~I~asf~Gg~vGv~-s~l~vve~n~vk~~~~k~C~~C----~GtG~~~C~~C~G 169 (230)
..+..+..-+.-++|..||.- -..+++.||.+... .|..| .--|.+.|+.|+.
T Consensus 9 kp~~~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FP---vCrpCyEYErkeG~q~CpqCkt 66 (93)
T d1weoa_ 9 KPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFP---ACRPCYEYERREGTQNCPQCKT 66 (93)
T ss_dssp SCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCC---CCHHHHHHHHHTSCSSCTTTCC
T ss_pred CChhhcccchhhhcccccccCCCCCEEEEecccCCc---cchHHHHHHHhccCccCcccCC
Confidence 345555555667788887731 22244455555333 44444 1234455666654
Done!