BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026956
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YQ3|B Chain B, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|B Chain B, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
pdb|2FBW|B Chain B, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|O Chain O, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2H88|B Chain B, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H88|O Chain O, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H89|B Chain B, Avian Respiratory Complex Ii With Malonate Bound
pdb|2WQY|B Chain B, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|O Chain O, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 252
Score = 253 bits (646), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 118/183 (64%), Positives = 144/183 (78%), Gaps = 2/183 (1%)
Query: 41 ASANTDTKKFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRS 99
A+A + KKF IYRW+PD P KP ++ +E++L +CGPMVLDALIKIK+E+D +LTFRRS
Sbjct: 5 AAATSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRS 64
Query: 100 CREGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNFYNQYKS 158
CREGICGSCAMNI G N LAC KI P S +T I PLPHM+V+KDLV D++NFY QYKS
Sbjct: 65 CREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKS 124
Query: 159 IEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAAL 218
IEP+LK+K+ ++ QS +DR KLDG+YECILCACCSTSCPSYWW + YLGPA L
Sbjct: 125 IEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVL 184
Query: 219 LHA 221
+ A
Sbjct: 185 MQA 187
>pdb|3ABV|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|B Chain B, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
Length = 252
Score = 243 bits (620), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 114/176 (64%), Positives = 138/176 (78%), Gaps = 2/176 (1%)
Query: 48 KKFQIYRWNPD-SPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICG 106
KKF IYRW+PD + KP ++ +EI+L CGPMVLDALIKIK+EID +LTFRRSCREGICG
Sbjct: 12 KKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGICG 71
Query: 107 SCAMNIDGCNGLACLTKISPS-GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 165
SCAMNI+G N LAC +I + S I PLPHM+VIKDLV D++NFY QYKSIEP+LK+
Sbjct: 72 SCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 131
Query: 166 KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHA 221
K+ ++ QS ++R KLDG+YECILCACCSTSCPSYWW + YLGPA L+ A
Sbjct: 132 KDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQA 187
>pdb|1ZOY|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|B Chain B, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3SFD|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|B Chain B, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 252
Score = 243 bits (619), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 114/176 (64%), Positives = 138/176 (78%), Gaps = 2/176 (1%)
Query: 48 KKFQIYRWNPD-SPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICG 106
KKF IYRW+PD + KP ++ +EI+L CGPMVLDALIKIK+EID +LTFRRSCREGICG
Sbjct: 12 KKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGICG 71
Query: 107 SCAMNIDGCNGLACLTKISPS-GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 165
SCAMNI+G N LAC +I + S I PLPHM+VIKDLV D++NFY QYKSIEP+LK+
Sbjct: 72 SCAMNINGGNTLACTRRIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKK 131
Query: 166 KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHA 221
K+ ++ QS ++R KLDG+YECILCACCSTSCPSYWW + YLGPA L+ A
Sbjct: 132 KDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQA 187
>pdb|3VR8|B Chain B, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|F Chain F, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|B Chain B, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|F Chain F, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 282
Score = 237 bits (605), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 112/176 (63%), Positives = 140/176 (79%), Gaps = 2/176 (1%)
Query: 48 KKFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICG 106
K F+IYR+NP+ P +KP+L++F+++L +CG MVLDALIKIK+E+DP+LTFRRSCREGICG
Sbjct: 36 KTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICG 95
Query: 107 SCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 165
SCAMNI G N LAC+ I + S +T I PLPHMFVIKDLV DM FY QY SI+PWL++
Sbjct: 96 SCAMNIAGENTLACICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQK 155
Query: 166 KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHA 221
K + K+ QS K++ KLDG+YECILCACCS SCPSYWW ++ YLGPA L+ A
Sbjct: 156 KTKINLGEKQQYQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQA 211
>pdb|1NEK|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
pdb|1NEN|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
pdb|2ACZ|B Chain B, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
pdb|2WDQ|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDV|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDR|B Chain B, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|F Chain F, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|J Chain J, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WS3|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WU2|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU5|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
Length = 238
Score = 187 bits (474), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 94/177 (53%), Positives = 122/177 (68%), Gaps = 6/177 (3%)
Query: 49 KFQIYRWNPDSPSKPELKEFEINLKECGPM-VLDALIKIKSEIDPSLTFRRSCREGICGS 107
+F IYR+NPD P ++++ + E M +LDALI++K E DPSL+FRRSCREG+CGS
Sbjct: 4 EFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCGS 62
Query: 108 CAMNIDGCNGLACLTKISP---SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 164
+N++G NGLAC+T IS G I PLP + VI+DLVVDM FY QY+ I+P+L
Sbjct: 63 DGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLL 122
Query: 165 RKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHA 221
P P +E Q + R KLDG+YECILCACCSTSCPS+WW + ++GPA LL A
Sbjct: 123 NNGQNP-PAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAA 178
>pdb|2WP9|B Chain B, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|F Chain F, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|J Chain J, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
Length = 238
Score = 187 bits (474), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 94/177 (53%), Positives = 122/177 (68%), Gaps = 6/177 (3%)
Query: 49 KFQIYRWNPDSPSKPELKEFEINLKECGPM-VLDALIKIKSEIDPSLTFRRSCREGICGS 107
+F IYR+NPD P ++++ + E M +LDALI++K E DPSL+FRRSCREG+CGS
Sbjct: 4 EFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLK-EKDPSLSFRRSCREGVCGS 62
Query: 108 CAMNIDGCNGLACLTKISP---SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLK 164
+N++G NGLAC+T IS G I PLP + VI+DLVVDM FY QY+ I+P+L
Sbjct: 63 DGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLL 122
Query: 165 RKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHA 221
P P +E Q + R KLDG+YECILCACCSTSCPS+WW + ++GPA LL A
Sbjct: 123 NNGQNP-PAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAA 178
>pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|N Chain N, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|B Chain B, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|N Chain N, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|B Chain B, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|N Chain N, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|2B76|B Chain B, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|N Chain N, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|3CIR|B Chain B, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|N Chain N, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3P4R|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|B Chain B, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|N Chain N, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 243
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 3/174 (1%)
Query: 49 KFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSC 108
K ++ R+NP+ + P +E+ + +LDAL IK + P L++R SCR ICGSC
Sbjct: 7 KIEVVRYNPEVDTAPHSAFYEVPY-DATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSC 65
Query: 109 AMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNP 168
M ++ LAC T + + L + + +DLVVDMT+F ++I+P++ +
Sbjct: 66 GMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSR 125
Query: 169 PPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAN 222
G I Q+ AK CI C C +CP + E ++GPAA+ A+
Sbjct: 126 TADQGTNI-QTPAQMAKYHQFSGCINCGLCYAACPQFGLNPE-FIGPAAITLAH 177
>pdb|1QLB|B Chain B, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|E Chain E, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|H Chain H, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|K Chain K, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|B Chain B, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|E Chain E, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|B Chain B, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|E Chain E, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
Length = 239
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 15/176 (8%)
Query: 51 QIYRWNPDSP-SKPELKEFEINLKECGPM-VLDALIKIKSEIDPSLTFRRSCREGICGSC 108
++++++P S SKP +E++I +E M + L I+ DP L F CR GICGSC
Sbjct: 8 RVFKYDPQSAVSKPHFQEYKI--EEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSC 65
Query: 109 AMNIDGCNGLAC--LTKISPSGSASTITPLPHMFVIKDLVVDMTNFYN-QYKSIEPWL-- 163
M I+G LAC LTK G T+ PLP +IKDL VD N++N + +E W+
Sbjct: 66 GMMINGRPSLACRTLTKDFEDG-VITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHA 124
Query: 164 -KRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAAL 218
K + + + P+ ++ +LD CI C CC +C + E ++G A L
Sbjct: 125 QKEHDISKLEERIEPEVAQEVFELD---RCIECGCCIAACGTK-IMREDFVGAAGL 176
>pdb|2BS2|B Chain B, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|E Chain E, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 241
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 15/176 (8%)
Query: 51 QIYRWNPDSP-SKPELKEFEINLKECGPM-VLDALIKIKSEIDPSLTFRRSCREGICGSC 108
++++++P S SKP +E++I +E M + L I+ DP L F CR GICGSC
Sbjct: 8 RVFKYDPQSAVSKPHFQEYKI--EEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSC 65
Query: 109 AMNIDGCNGLAC--LTKISPSGSASTITPLPHMFVIKDLVVDMTNFYN-QYKSIEPWL-- 163
M I+G LAC LTK G T+ PLP +IKDL VD N++N + +E W+
Sbjct: 66 GMMINGRPSLACRTLTKDFEDG-VITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHA 124
Query: 164 -KRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAAL 218
K + + + P+ ++ +LD CI C CC +C + E ++G A L
Sbjct: 125 QKEHDISKLEERIEPEVAQEVFELD---RCIECGCCIAACGTK-IMREDFVGAAGL 176
>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
pdb|1VLB|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
Desulfovibrio Gigas At 1.28 A
pdb|3FAH|A Chain A, Glycerol Inhibited Form Of Aldehyde Oxidoreductase From
Desulfovibrio Gigas
pdb|3FC4|A Chain A, Ethylene Glycol Inhibited Form Of Aldehyde Oxidoreductase
From Desulfovibrio Gigas
pdb|3L4P|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
Length = 907
Score = 31.6 bits (70), Expect = 0.34, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 100 CREGICGSCAMNIDGCNGLACLTKISPSGSASTITPL 136
C +G CG+C++ +DG AC+TK+ + IT +
Sbjct: 40 CEQGQCGACSVILDGKVVRACVTKMKRVADGAQITTI 76
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 95 TFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPL 136
+ + C +G CG+C + +DG AC+ K+S +++T L
Sbjct: 35 SVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTL 76
>pdb|1T3Q|A Chain A, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|D Chain D, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 168
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 99 SCREGICGSCAMNIDGCNGLACLT 122
C +G+CGSC + IDG +CLT
Sbjct: 47 GCEQGVCGSCTILIDGAPMRSCLT 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,530,971
Number of Sequences: 62578
Number of extensions: 259124
Number of successful extensions: 717
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 22
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)