Query 026956
Match_columns 230
No_of_seqs 170 out of 1884
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 02:59:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00129 succinate dehydrogena 100.0 8.8E-64 1.9E-68 450.2 19.1 224 1-228 1-225 (276)
2 COG0479 FrdB Succinate dehydro 100.0 9.7E-63 2.1E-67 434.0 16.0 178 46-228 1-179 (234)
3 PRK13552 frdB fumarate reducta 100.0 3.3E-61 7.2E-66 425.3 17.0 183 44-228 1-186 (239)
4 PRK12575 succinate dehydrogena 100.0 1.9E-59 4E-64 413.7 16.8 181 45-228 2-182 (235)
5 PRK08640 sdhB succinate dehydr 100.0 2.7E-59 5.8E-64 415.5 16.3 180 45-228 3-189 (249)
6 PRK12386 fumarate reductase ir 100.0 2.4E-56 5.2E-61 397.4 16.4 177 45-228 2-183 (251)
7 PRK12385 fumarate reductase ir 100.0 7.8E-56 1.7E-60 392.1 15.6 180 46-228 5-184 (244)
8 PRK12577 succinate dehydrogena 100.0 2.4E-53 5.1E-58 390.0 17.4 178 46-228 1-189 (329)
9 KOG3049 Succinate dehydrogenas 100.0 3.7E-54 8.1E-59 374.5 10.6 194 35-228 34-230 (288)
10 PRK12576 succinate dehydrogena 100.0 4.4E-53 9.6E-58 381.0 17.2 183 42-228 3-189 (279)
11 PRK05950 sdhB succinate dehydr 100.0 2.2E-52 4.8E-57 366.1 15.6 177 49-228 1-179 (232)
12 PRK07570 succinate dehydrogena 100.0 2.4E-51 5.2E-56 365.0 13.8 169 47-221 2-185 (250)
13 TIGR00384 dhsB succinate dehyd 100.0 1E-50 2.2E-55 352.9 14.8 174 52-228 1-175 (220)
14 PF13085 Fer2_3: 2Fe-2S iron-s 100.0 9.6E-42 2.1E-46 270.4 11.2 105 49-154 1-110 (110)
15 PRK06259 succinate dehydrogena 100.0 7.3E-39 1.6E-43 305.1 16.0 167 46-227 2-168 (486)
16 TIGR03193 4hydroxCoAred 4-hydr 99.6 1.4E-15 3.1E-20 126.5 3.8 68 66-138 9-78 (148)
17 PRK11433 aldehyde oxidoreducta 99.5 1E-14 2.3E-19 127.9 5.8 84 66-154 59-147 (217)
18 PRK09908 xanthine dehydrogenas 99.5 1.1E-14 2.3E-19 122.5 4.5 67 66-138 16-84 (159)
19 COG2080 CoxS Aerobic-type carb 99.5 1.1E-14 2.4E-19 121.8 3.4 86 66-156 11-102 (156)
20 TIGR03198 pucE xanthine dehydr 99.4 6.1E-14 1.3E-18 117.1 2.8 68 66-138 11-80 (151)
21 PRK09800 putative hypoxanthine 99.1 1.7E-11 3.7E-16 126.7 2.6 83 66-154 10-98 (956)
22 TIGR03313 Se_sel_red_Mo probab 99.1 1.8E-11 4E-16 126.4 2.6 84 66-155 6-95 (951)
23 TIGR02963 xanthine_xdhA xanthi 99.1 2.3E-11 4.9E-16 117.2 3.1 68 66-138 8-87 (467)
24 PRK08493 NADH dehydrogenase su 99.1 3.1E-11 6.8E-16 123.0 3.9 56 70-127 11-67 (819)
25 TIGR03311 Se_dep_Molyb_1 selen 99.1 3.9E-11 8.5E-16 122.7 2.8 81 69-154 9-93 (848)
26 COG3383 Uncharacterized anaero 98.9 3.4E-10 7.4E-15 113.5 0.8 56 70-127 15-71 (978)
27 PLN00192 aldehyde oxidase 98.9 7.2E-10 1.6E-14 118.2 3.0 81 66-151 13-110 (1344)
28 PRK07569 bidirectional hydroge 98.9 1.1E-09 2.4E-14 96.4 2.6 56 70-127 13-71 (234)
29 TIGR02969 mam_aldehyde_ox alde 98.8 1E-09 2.2E-14 117.0 2.3 80 70-154 15-110 (1330)
30 PTZ00305 NADH:ubiquinone oxido 98.8 2.1E-09 4.5E-14 98.2 3.1 59 66-127 76-137 (297)
31 COG1034 NuoG NADH dehydrogenas 98.7 6.9E-09 1.5E-13 104.2 3.5 57 69-127 10-69 (693)
32 cd00207 fer2 2Fe-2S iron-sulfu 98.7 2.5E-08 5.3E-13 73.0 5.0 57 68-134 10-84 (84)
33 PRK07860 NADH dehydrogenase su 98.7 1.8E-08 3.8E-13 102.6 4.3 58 66-127 12-72 (797)
34 TIGR01973 NuoG NADH-quinone ox 98.6 1.1E-08 2.4E-13 100.7 2.3 57 69-127 7-67 (603)
35 PF13510 Fer2_4: 2Fe-2S iron-s 98.6 7.8E-08 1.7E-12 72.3 5.4 62 66-134 11-78 (82)
36 PRK09129 NADH dehydrogenase su 98.6 1.9E-08 4.1E-13 101.7 2.4 58 66-127 9-69 (776)
37 PLN02906 xanthine dehydrogenas 98.5 2E-08 4.3E-13 107.2 1.1 57 77-138 2-70 (1319)
38 PRK09130 NADH dehydrogenase su 98.5 4.3E-08 9.2E-13 98.6 2.3 56 70-127 11-70 (687)
39 PF00111 Fer2: 2Fe-2S iron-sul 98.5 3.8E-07 8.1E-12 66.4 5.9 42 66-113 6-48 (78)
40 PRK08166 NADH dehydrogenase su 98.3 2.6E-07 5.5E-12 94.5 1.8 56 70-135 11-79 (847)
41 PRK12814 putative NADPH-depend 98.3 2E-06 4.3E-11 85.8 7.8 62 67-135 12-76 (652)
42 TIGR02008 fdx_plant ferredoxin 98.2 2.8E-06 6.1E-11 65.4 5.9 59 69-137 16-92 (97)
43 PRK10713 2Fe-2S ferredoxin Yfa 98.2 3E-06 6.5E-11 63.7 5.3 34 76-115 19-53 (84)
44 TIGR02007 fdx_isc ferredoxin, 98.1 7.4E-06 1.6E-10 64.6 6.8 72 48-136 4-100 (110)
45 CHL00134 petF ferredoxin; Vali 98.1 5E-06 1.1E-10 64.4 5.7 59 68-136 17-93 (99)
46 TIGR02160 PA_CoA_Oxy5 phenylac 98.0 1.2E-05 2.6E-10 73.8 7.5 40 70-116 277-317 (352)
47 COG4630 XdhA Xanthine dehydrog 98.0 3.7E-06 8E-11 79.7 3.5 77 71-154 22-109 (493)
48 PLN02593 adrenodoxin-like ferr 97.9 3.3E-05 7.2E-10 61.8 7.1 61 67-134 12-99 (117)
49 KOG0430 Xanthine dehydrogenase 97.9 1.3E-05 2.9E-10 83.9 5.7 68 66-138 10-89 (1257)
50 PRK11274 glcF glycolate oxidas 97.9 1.2E-05 2.6E-10 75.3 4.1 56 173-228 6-61 (407)
51 PRK10684 HCP oxidoreductase, N 97.8 3.9E-05 8.5E-10 70.2 6.7 42 66-116 258-300 (332)
52 PLN03136 Ferredoxin; Provision 97.8 3.8E-05 8.3E-10 64.1 5.6 56 70-135 68-141 (148)
53 PTZ00038 ferredoxin; Provision 97.8 4.1E-05 8.9E-10 66.5 5.8 57 70-136 109-183 (191)
54 PRK05713 hypothetical protein; 97.7 5.9E-05 1.3E-09 68.5 5.5 58 68-135 9-84 (312)
55 COG0633 Fdx Ferredoxin [Energy 97.6 9.4E-05 2E-09 57.7 5.2 33 76-114 22-55 (102)
56 PTZ00490 Ferredoxin superfamil 97.6 0.0003 6.5E-09 58.5 7.5 76 45-134 33-134 (143)
57 PRK07609 CDP-6-deoxy-delta-3,4 97.6 0.0001 2.3E-09 67.3 5.1 49 70-125 14-82 (339)
58 PRK11872 antC anthranilate dio 97.5 0.00015 3.3E-09 66.7 5.5 50 69-125 16-85 (340)
59 TIGR01941 nqrF NADH:ubiquinone 97.3 0.00037 8E-09 65.8 5.3 58 68-135 42-120 (405)
60 PRK05464 Na(+)-translocating N 97.1 0.00066 1.4E-08 64.1 5.5 51 69-126 47-118 (409)
61 TIGR00273 iron-sulfur cluster- 96.7 0.0011 2.4E-08 63.8 2.6 37 184-220 287-328 (432)
62 PRK12775 putative trifunctiona 96.3 0.0034 7.3E-08 66.1 4.1 46 77-122 190-239 (1006)
63 PRK12778 putative bifunctional 96.3 0.0044 9.5E-08 62.9 4.4 30 93-122 210-239 (752)
64 PF12797 Fer4_2: 4Fe-4S bindin 96.0 0.0016 3.4E-08 38.0 -0.3 17 188-204 6-22 (22)
65 KOG2282 NADH-ubiquinone oxidor 95.5 0.015 3.2E-07 57.6 4.2 59 67-127 39-100 (708)
66 PF12837 Fer4_6: 4Fe-4S bindin 95.4 0.0051 1.1E-07 36.4 0.3 17 188-204 5-21 (24)
67 PF12800 Fer4_4: 4Fe-4S bindin 95.3 0.0039 8.4E-08 34.0 -0.3 15 190-204 2-16 (17)
68 PF13183 Fer4_8: 4Fe-4S diclus 95.2 0.0034 7.4E-08 42.8 -0.8 18 189-206 2-19 (57)
69 PF12798 Fer4_3: 4Fe-4S bindin 95.2 0.005 1.1E-07 32.7 -0.1 14 192-205 1-14 (15)
70 PRK00054 dihydroorotate dehydr 95.0 0.009 1.9E-07 52.4 1.0 25 97-121 214-238 (250)
71 PF00037 Fer4: 4Fe-4S binding 94.7 0.0069 1.5E-07 35.5 -0.4 17 189-205 5-21 (24)
72 PF13534 Fer4_17: 4Fe-4S diclu 94.7 0.017 3.6E-07 40.0 1.3 31 191-224 1-31 (61)
73 cd06192 DHOD_e_trans_like FAD/ 94.3 0.029 6.3E-07 48.7 2.3 30 93-122 209-238 (243)
74 TIGR01372 soxA sarcosine oxida 94.1 0.091 2E-06 55.3 6.0 65 71-140 23-98 (985)
75 COG1139 Uncharacterized conser 93.8 0.026 5.5E-07 54.7 1.1 35 185-219 303-342 (459)
76 PRK05802 hypothetical protein; 93.2 0.053 1.2E-06 50.0 2.2 33 93-125 285-318 (320)
77 PF13187 Fer4_9: 4Fe-4S diclus 92.7 0.041 8.9E-07 37.1 0.6 18 188-205 36-53 (55)
78 PF13237 Fer4_10: 4Fe-4S diclu 92.7 0.029 6.3E-07 37.7 -0.2 15 189-203 38-52 (52)
79 PF13237 Fer4_10: 4Fe-4S diclu 92.7 0.037 8.1E-07 37.1 0.3 18 187-204 4-21 (52)
80 COG1150 HdrC Heterodisulfide r 92.0 0.15 3.2E-06 44.7 3.2 36 188-226 37-72 (195)
81 PF13187 Fer4_9: 4Fe-4S diclus 91.9 0.051 1.1E-06 36.7 0.1 16 191-206 1-16 (55)
82 cd06219 DHOD_e_trans_like1 FAD 91.7 0.11 2.3E-06 45.6 2.1 27 95-121 211-237 (248)
83 cd06218 DHOD_e_trans FAD/NAD b 91.2 0.13 2.8E-06 45.1 2.0 24 98-121 214-240 (246)
84 PF13746 Fer4_18: 4Fe-4S diclu 90.7 0.066 1.4E-06 38.9 -0.2 19 187-205 47-65 (69)
85 PRK08345 cytochrome-c3 hydroge 90.6 0.099 2.1E-06 47.1 0.7 30 92-121 243-272 (289)
86 COG3894 Uncharacterized metal- 90.4 0.25 5.4E-06 49.1 3.4 45 75-125 16-79 (614)
87 PF10418 DHODB_Fe-S_bind: Iron 90.4 0.23 4.9E-06 32.8 2.1 25 97-121 3-29 (40)
88 PRK08364 sulfur carrier protei 89.9 1.7 3.7E-05 31.4 6.6 54 66-136 14-67 (70)
89 PF12838 Fer4_7: 4Fe-4S diclus 89.7 0.086 1.9E-06 35.5 -0.3 16 191-206 1-16 (52)
90 COG1145 NapF Ferredoxin [Energ 89.6 0.089 1.9E-06 38.8 -0.3 17 189-205 28-44 (99)
91 PF14697 Fer4_21: 4Fe-4S diclu 89.4 0.092 2E-06 37.1 -0.4 16 189-204 5-20 (59)
92 PLN00071 photosystem I subunit 89.3 0.1 2.2E-06 38.2 -0.2 28 190-217 46-73 (81)
93 PF13534 Fer4_17: 4Fe-4S diclu 88.9 0.1 2.3E-06 35.9 -0.3 19 187-205 41-59 (61)
94 PF12838 Fer4_7: 4Fe-4S diclus 88.4 0.17 3.7E-06 34.0 0.5 17 189-205 35-51 (52)
95 PRK06222 ferredoxin-NADP(+) re 88.4 0.31 6.8E-06 43.7 2.3 29 93-121 210-238 (281)
96 PF14697 Fer4_21: 4Fe-4S diclu 88.4 0.15 3.3E-06 35.9 0.2 16 189-204 38-53 (59)
97 cd06220 DHOD_e_trans_like2 FAD 87.9 0.3 6.5E-06 42.2 1.8 22 98-121 201-222 (233)
98 COG1143 NuoI Formate hydrogenl 87.8 0.15 3.3E-06 43.7 -0.2 20 188-207 93-112 (172)
99 COG4656 RnfC Predicted NADH:ub 87.3 0.33 7.2E-06 48.1 1.9 25 182-206 396-420 (529)
100 KOG3256 NADH:ubiquinone oxidor 86.7 0.16 3.4E-06 43.9 -0.6 20 187-206 147-166 (212)
101 PF13183 Fer4_8: 4Fe-4S diclus 86.6 0.23 5E-06 33.6 0.2 15 190-204 41-55 (57)
102 PF13459 Fer4_15: 4Fe-4S singl 86.3 0.27 5.8E-06 34.8 0.4 17 189-205 5-21 (65)
103 COG2871 NqrF Na+-transporting 85.8 1.3 2.9E-05 41.6 4.8 63 46-125 35-118 (410)
104 COG1146 Ferredoxin [Energy pro 85.8 0.23 5E-06 35.4 -0.1 17 189-205 40-56 (68)
105 TIGR02936 fdxN_nitrog ferredox 85.3 0.29 6.4E-06 36.3 0.3 19 187-205 18-36 (91)
106 CHL00065 psaC photosystem I su 84.6 0.18 3.8E-06 37.1 -1.2 27 190-216 46-72 (81)
107 TIGR03048 PS_I_psaC photosyste 84.2 0.24 5.2E-06 36.3 -0.6 28 190-217 45-72 (80)
108 PF13484 Fer4_16: 4Fe-4S doubl 84.0 0.28 6E-06 34.4 -0.3 18 191-208 1-18 (67)
109 PRK02651 photosystem I subunit 83.2 0.2 4.4E-06 36.5 -1.3 28 190-217 46-73 (81)
110 TIGR00403 ndhI NADH-plastoquin 82.5 0.4 8.8E-06 41.0 0.0 18 188-205 60-77 (183)
111 PRK02651 photosystem I subunit 81.9 0.36 7.8E-06 35.2 -0.5 18 188-205 7-24 (81)
112 PF13370 Fer4_13: 4Fe-4S singl 81.8 0.4 8.8E-06 33.5 -0.2 17 189-205 3-19 (58)
113 CHL00014 ndhI NADH dehydrogena 81.3 0.45 9.7E-06 40.0 -0.2 17 189-205 58-74 (167)
114 CHL00065 psaC photosystem I su 81.1 0.37 8E-06 35.4 -0.6 17 189-205 8-24 (81)
115 PRK09626 oorD 2-oxoglutarate-a 80.9 0.45 9.7E-06 36.7 -0.3 19 188-206 14-32 (103)
116 PRK10194 ferredoxin-type prote 80.9 0.45 9.6E-06 39.6 -0.3 20 187-206 31-50 (163)
117 TIGR00403 ndhI NADH-plastoquin 80.0 0.53 1.1E-05 40.3 -0.1 17 189-205 101-117 (183)
118 TIGR02936 fdxN_nitrog ferredox 80.0 0.48 1E-05 35.1 -0.4 17 189-205 69-85 (91)
119 PRK08222 hydrogenase 4 subunit 79.6 0.67 1.4E-05 39.6 0.4 19 188-206 36-54 (181)
120 PRK05352 Na(+)-translocating N 79.3 1.1 2.5E-05 43.6 1.9 29 189-224 373-401 (448)
121 TIGR03048 PS_I_psaC photosyste 78.9 0.54 1.2E-05 34.4 -0.4 18 188-205 6-23 (80)
122 PRK08318 dihydropyrimidine deh 78.2 0.27 5.8E-06 46.7 -2.7 66 138-204 289-356 (420)
123 PRK05888 NADH dehydrogenase su 78.2 0.56 1.2E-05 39.1 -0.5 17 189-205 57-73 (164)
124 PRK05035 electron transport co 78.1 0.78 1.7E-05 47.1 0.4 19 187-205 406-424 (695)
125 TIGR01945 rnfC electron transp 77.6 0.61 1.3E-05 44.9 -0.5 19 187-205 360-378 (435)
126 TIGR00384 dhsB succinate dehyd 77.5 0.67 1.5E-05 40.4 -0.2 19 187-205 191-209 (220)
127 PRK08348 NADH-plastoquinone ox 77.5 0.67 1.5E-05 36.6 -0.2 20 187-206 39-58 (120)
128 PLN00071 photosystem I subunit 77.4 0.62 1.4E-05 34.0 -0.4 17 189-205 8-24 (81)
129 TIGR02911 sulfite_red_B sulfit 77.2 0.91 2E-05 40.3 0.5 19 93-111 222-240 (261)
130 COG1142 HycB Fe-S-cluster-cont 76.7 0.92 2E-05 38.7 0.4 20 187-206 79-98 (165)
131 TIGR01971 NuoI NADH-quinone ox 76.6 0.75 1.6E-05 36.0 -0.2 17 189-205 42-58 (122)
132 PRK08221 anaerobic sulfite red 76.6 0.91 2E-05 40.3 0.3 19 93-111 224-242 (263)
133 PRK13669 hypothetical protein; 76.6 2.4 5.2E-05 32.1 2.6 29 90-119 25-58 (78)
134 PRK05352 Na(+)-translocating N 76.4 1.5 3.3E-05 42.7 1.8 30 187-226 410-441 (448)
135 TIGR01936 nqrA NADH:ubiquinone 76.1 1.6 3.4E-05 42.6 1.9 28 189-223 372-399 (447)
136 PRK07570 succinate dehydrogena 76.0 0.82 1.8E-05 41.2 -0.1 19 187-205 209-227 (250)
137 CHL00014 ndhI NADH dehydrogena 75.9 0.76 1.7E-05 38.6 -0.3 16 190-205 99-114 (167)
138 TIGR02494 PFLE_PFLC glycyl-rad 75.3 0.88 1.9E-05 40.7 -0.1 19 188-206 46-64 (295)
139 PRK14028 pyruvate ferredoxin o 75.0 0.9 2E-05 41.5 -0.1 19 188-206 245-263 (312)
140 PRK09625 porD pyruvate flavodo 74.7 0.9 1.9E-05 37.0 -0.2 16 190-205 89-104 (133)
141 TIGR00397 mauM_napG MauM/NapG 74.3 0.58 1.2E-05 41.0 -1.5 18 189-206 52-69 (213)
142 PRK13984 putative oxidoreducta 74.3 1.6 3.4E-05 43.2 1.3 21 185-205 180-200 (604)
143 PRK12814 putative NADPH-depend 74.2 0.8 1.7E-05 46.1 -0.7 22 187-208 613-634 (652)
144 COG1141 Fer Ferredoxin [Energy 74.1 1.3 2.9E-05 32.5 0.6 17 189-205 7-23 (68)
145 PRK09477 napH quinol dehydroge 73.9 1 2.2E-05 40.5 -0.0 17 189-205 241-257 (271)
146 TIGR01971 NuoI NADH-quinone ox 73.8 0.9 2E-05 35.5 -0.4 18 189-206 81-98 (122)
147 PRK15055 anaerobic sulfite red 73.8 1.2 2.6E-05 42.0 0.4 17 188-204 224-240 (344)
148 PRK05035 electron transport co 73.8 1.1 2.4E-05 45.9 0.2 18 188-205 368-385 (695)
149 PF13484 Fer4_16: 4Fe-4S doubl 73.8 1.2 2.7E-05 31.0 0.4 17 188-204 50-66 (67)
150 PRK09625 porD pyruvate flavodo 73.7 1.2 2.6E-05 36.2 0.3 18 188-205 57-74 (133)
151 cd06221 sulfite_reductase_like 73.7 1.6 3.4E-05 38.4 1.1 24 94-121 223-246 (253)
152 PRK12385 fumarate reductase ir 73.6 1.2 2.6E-05 39.8 0.3 19 187-205 200-218 (244)
153 COG3383 Uncharacterized anaero 73.5 0.95 2.1E-05 47.1 -0.4 29 188-216 190-218 (978)
154 COG1146 Ferredoxin [Energy pro 73.5 1.2 2.5E-05 31.7 0.2 18 189-206 7-24 (68)
155 PRK06273 ferredoxin; Provision 73.4 1.1 2.5E-05 37.9 0.1 19 188-206 47-65 (165)
156 TIGR01683 thiS thiamine biosyn 73.1 11 0.00024 26.4 5.1 49 72-136 10-61 (64)
157 cd01916 ACS_1 Acetyl-CoA synth 73.1 1.5 3.3E-05 45.2 1.0 22 184-205 359-380 (731)
158 COG1145 NapF Ferredoxin [Energ 73.0 1.2 2.6E-05 32.6 0.2 18 189-206 62-79 (99)
159 TIGR03290 CoB_CoM_SS_C CoB--Co 72.9 0.97 2.1E-05 36.8 -0.4 17 189-205 45-61 (144)
160 COG1143 NuoI Formate hydrogenl 72.9 1.2 2.6E-05 38.1 0.2 17 190-206 55-71 (172)
161 PRK06991 ferredoxin; Provision 72.8 1.4 3E-05 40.3 0.5 18 188-205 113-130 (270)
162 PRK12387 formate hydrogenlyase 72.6 1.3 2.8E-05 37.4 0.3 18 188-205 36-53 (180)
163 PRK00941 acetyl-CoA decarbonyl 72.4 1.1 2.4E-05 46.6 -0.2 22 184-205 398-419 (781)
164 PRK08348 NADH-plastoquinone ox 72.3 1.2 2.7E-05 35.0 0.1 17 190-206 73-89 (120)
165 PRK09624 porD pyuvate ferredox 72.2 1.2 2.6E-05 34.7 0.0 16 190-205 81-96 (105)
166 PRK05888 NADH dehydrogenase su 71.9 1.1 2.4E-05 37.3 -0.3 17 189-205 96-112 (164)
167 PF14157 YmzC: YmzC-like prote 71.8 2.3 4.9E-05 31.0 1.3 14 49-62 40-53 (63)
168 TIGR02179 PorD_KorD 2-oxoacid: 71.7 1.1 2.4E-05 32.2 -0.3 18 189-206 24-41 (78)
169 PF07293 DUF1450: Protein of u 71.5 3.7 8E-05 31.0 2.5 28 91-119 26-58 (78)
170 PRK06273 ferredoxin; Provision 71.4 1.1 2.4E-05 37.9 -0.4 18 189-206 90-107 (165)
171 PRK15449 ferredoxin-like prote 71.1 1 2.2E-05 35.1 -0.6 18 188-205 59-76 (95)
172 PRK15055 anaerobic sulfite red 71.0 1.7 3.6E-05 41.1 0.6 18 188-205 305-322 (344)
173 PRK01777 hypothetical protein; 70.7 37 0.00081 26.2 8.0 70 47-133 3-73 (95)
174 PRK09326 F420H2 dehydrogenase 70.5 1.7 3.6E-05 40.4 0.5 18 189-206 52-69 (341)
175 PRK09476 napG quinol dehydroge 70.5 0.97 2.1E-05 40.7 -1.0 18 189-206 58-75 (254)
176 KOG3309 Ferredoxin [Energy pro 70.1 26 0.00056 29.9 7.4 64 50-126 44-133 (159)
177 PF02597 ThiS: ThiS family; I 70.0 13 0.00029 26.1 5.1 41 69-119 15-55 (77)
178 PRK05950 sdhB succinate dehydr 69.8 1.3 2.9E-05 38.9 -0.2 18 188-205 196-213 (232)
179 TIGR00314 cdhA CO dehydrogenas 69.8 1.7 3.8E-05 45.1 0.5 24 182-205 391-414 (784)
180 TIGR02494 PFLE_PFLC glycyl-rad 69.1 1.8 3.9E-05 38.7 0.4 18 189-206 81-98 (295)
181 PRK06437 hypothetical protein; 69.0 14 0.00031 26.4 5.1 35 66-118 13-47 (67)
182 PRK09624 porD pyuvate ferredox 68.6 1.9 4.2E-05 33.6 0.4 18 188-205 49-66 (105)
183 TIGR02176 pyruv_ox_red pyruvat 68.4 1.6 3.5E-05 47.2 -0.1 31 188-219 681-711 (1165)
184 COG1453 Predicted oxidoreducta 68.2 1.7 3.7E-05 41.7 0.1 18 189-206 350-367 (391)
185 TIGR02163 napH_ ferredoxin-typ 68.1 1.6 3.5E-05 39.0 -0.1 17 189-205 233-249 (255)
186 TIGR01936 nqrA NADH:ubiquinone 68.1 2.6 5.6E-05 41.1 1.3 31 187-227 409-441 (447)
187 cd00565 ThiS ThiaminS ubiquiti 67.8 15 0.00033 25.7 5.0 53 66-136 7-62 (65)
188 TIGR00397 mauM_napG MauM/NapG 67.5 1.7 3.7E-05 38.1 -0.1 17 189-205 174-190 (213)
189 PRK08640 sdhB succinate dehydr 67.5 2.3 4.9E-05 38.2 0.7 18 188-205 207-224 (249)
190 PRK08493 NADH dehydrogenase su 67.1 2.3 4.9E-05 44.5 0.7 23 190-212 204-226 (819)
191 COG4656 RnfC Predicted NADH:ub 66.5 2 4.3E-05 42.8 0.2 15 191-205 366-380 (529)
192 PRK09623 vorD 2-ketoisovalerat 66.4 1.8 3.9E-05 33.6 -0.2 19 187-205 48-66 (105)
193 PRK08222 hydrogenase 4 subunit 66.4 1.7 3.7E-05 37.1 -0.3 16 190-205 73-88 (181)
194 PRK06991 ferredoxin; Provision 66.2 1.6 3.6E-05 39.8 -0.4 18 189-206 84-101 (270)
195 TIGR01945 rnfC electron transp 65.8 1.8 3.8E-05 41.7 -0.3 18 188-205 400-417 (435)
196 PLN02799 Molybdopterin synthas 65.7 8.5 0.00018 28.1 3.4 60 67-136 20-79 (82)
197 PRK12575 succinate dehydrogena 65.7 3.1 6.7E-05 37.1 1.2 18 188-205 199-216 (235)
198 PRK12576 succinate dehydrogena 65.4 1.8 3.9E-05 39.5 -0.3 18 188-205 204-221 (279)
199 PRK09476 napG quinol dehydroge 65.2 2.6 5.6E-05 38.0 0.6 17 189-205 183-199 (254)
200 PRK12387 formate hydrogenlyase 65.2 2 4.3E-05 36.4 -0.1 17 189-205 72-88 (180)
201 PRK09623 vorD 2-ketoisovalerat 65.1 2.2 4.8E-05 33.1 0.1 16 190-205 81-96 (105)
202 PRK05113 electron transport co 65.1 1.8 3.9E-05 37.3 -0.4 18 188-205 112-129 (191)
203 TIGR02910 sulfite_red_A sulfit 65.0 2.5 5.3E-05 39.9 0.4 17 189-205 219-235 (334)
204 PRK08318 dihydropyrimidine deh 63.1 2.8 6E-05 39.8 0.4 17 188-204 375-391 (420)
205 cd00754 MoaD Ubiquitin domain 62.8 19 0.00042 25.5 4.8 57 68-136 18-77 (80)
206 PRK09626 oorD 2-oxoglutarate-a 62.8 2.1 4.6E-05 32.9 -0.3 17 190-206 53-69 (103)
207 TIGR02912 sulfite_red_C sulfit 62.7 2 4.4E-05 39.4 -0.6 18 188-205 199-216 (314)
208 PRK15033 tricarballylate utili 62.4 5.3 0.00011 38.5 2.2 17 188-204 65-81 (389)
209 PRK12577 succinate dehydrogena 62.3 3.8 8.3E-05 38.1 1.2 17 189-205 208-224 (329)
210 COG1144 Pyruvate:ferredoxin ox 62.3 1.1 2.3E-05 34.9 -2.1 18 187-204 63-80 (91)
211 TIGR02912 sulfite_red_C sulfit 62.2 2.1 4.6E-05 39.2 -0.5 17 188-204 167-183 (314)
212 TIGR02060 aprB adenosine phosp 62.1 2.7 5.9E-05 34.4 0.2 16 190-205 45-60 (132)
213 PRK09477 napH quinol dehydroge 61.9 2.7 5.8E-05 37.9 0.1 18 188-205 206-223 (271)
214 PF13247 Fer4_11: 4Fe-4S diclu 61.9 1.8 4E-05 33.6 -0.9 18 189-206 39-56 (98)
215 TIGR00273 iron-sulfur cluster- 61.1 2.8 6E-05 40.7 0.0 17 189-205 342-358 (432)
216 PRK09853 putative selenate red 60.8 2.8 6.1E-05 44.9 0.0 18 189-206 925-942 (1019)
217 TIGR03287 methan_mark_16 putat 60.8 3.3 7.1E-05 39.9 0.5 19 187-205 327-345 (391)
218 TIGR02910 sulfite_red_A sulfit 60.7 2.7 5.9E-05 39.6 -0.1 18 188-205 299-316 (334)
219 PRK11274 glcF glycolate oxidas 60.7 2.8 6E-05 39.3 -0.0 17 189-205 72-88 (407)
220 TIGR02484 CitB CitB domain pro 60.3 11 0.00025 36.1 4.0 42 179-224 39-82 (372)
221 PRK11168 glpC sn-glycerol-3-ph 60.2 2.7 5.9E-05 39.1 -0.2 18 188-205 52-69 (396)
222 PRK08764 ferredoxin; Provision 60.1 2.9 6.3E-05 33.9 -0.0 16 190-205 85-100 (135)
223 TIGR00402 napF ferredoxin-type 59.8 2.6 5.6E-05 32.4 -0.3 18 190-207 66-83 (101)
224 TIGR02066 dsrB sulfite reducta 59.5 2.9 6.3E-05 39.3 -0.1 20 187-206 211-230 (341)
225 COG0348 NapH Polyferredoxin [E 59.5 3.1 6.8E-05 39.5 0.1 16 191-206 246-261 (386)
226 TIGR02179 PorD_KorD 2-oxoacid: 59.5 2.6 5.7E-05 30.3 -0.3 16 190-205 55-70 (78)
227 PRK10194 ferredoxin-type prote 59.3 3.1 6.8E-05 34.5 0.1 18 189-206 137-154 (163)
228 TIGR02745 ccoG_rdxA_fixG cytoc 59.2 3.6 7.9E-05 40.0 0.5 16 190-205 255-270 (434)
229 TIGR00402 napF ferredoxin-type 58.7 3.3 7.1E-05 31.8 0.1 17 189-205 33-49 (101)
230 PRK05113 electron transport co 58.3 3 6.5E-05 35.9 -0.2 17 189-205 143-159 (191)
231 TIGR01944 rnfB electron transp 58.2 2.7 5.8E-05 35.2 -0.6 18 188-205 111-128 (165)
232 TIGR03478 DMSO_red_II_bet DMSO 57.9 3.9 8.4E-05 38.4 0.4 18 188-205 160-177 (321)
233 TIGR02163 napH_ ferredoxin-typ 57.9 3 6.6E-05 37.3 -0.3 17 189-205 200-216 (255)
234 TIGR02700 flavo_MJ0208 archaeo 57.8 4 8.6E-05 36.0 0.5 17 189-205 147-163 (234)
235 TIGR02176 pyruv_ox_red pyruvat 57.3 3.3 7.2E-05 44.9 -0.2 17 189-205 738-754 (1165)
236 COG1139 Uncharacterized conser 57.1 3.9 8.5E-05 40.0 0.3 19 187-205 355-373 (459)
237 PRK13984 putative oxidoreducta 57.1 3.8 8.2E-05 40.6 0.2 19 187-205 42-60 (604)
238 TIGR01944 rnfB electron transp 57.0 3.4 7.5E-05 34.5 -0.1 17 189-205 142-158 (165)
239 PRK12386 fumarate reductase ir 56.8 3.3 7.1E-05 37.4 -0.2 19 187-205 197-215 (251)
240 PRK13409 putative ATPase RIL; 56.8 3.7 8.1E-05 41.1 0.1 17 190-206 49-65 (590)
241 PRK06259 succinate dehydrogena 56.7 3.2 6.8E-05 40.1 -0.4 19 187-205 182-200 (486)
242 PRK05659 sulfur carrier protei 56.5 31 0.00068 23.9 4.8 41 72-128 12-55 (66)
243 TIGR03149 cyt_nit_nrfC cytochr 56.4 3.7 8.1E-05 36.1 0.0 18 188-205 44-61 (225)
244 COG4231 Indolepyruvate ferredo 56.3 4.2 9.2E-05 41.4 0.4 21 187-207 605-625 (640)
245 PRK12779 putative bifunctional 56.2 6.4 0.00014 41.8 1.7 48 93-156 876-927 (944)
246 COG1245 Predicted ATPase, RNas 56.1 4.1 8.9E-05 40.6 0.3 17 190-206 50-66 (591)
247 PRK08053 sulfur carrier protei 55.6 42 0.00092 23.6 5.4 54 66-137 8-64 (66)
248 PRK14028 pyruvate ferredoxin o 55.0 3.6 7.8E-05 37.6 -0.3 17 189-205 288-304 (312)
249 TIGR02512 Fe_only_hydrog hydro 54.6 3.9 8.4E-05 38.5 -0.2 18 189-206 49-66 (374)
250 COG1149 MinD superfamily P-loo 54.5 5 0.00011 37.1 0.5 18 189-206 68-85 (284)
251 TIGR02700 flavo_MJ0208 archaeo 54.4 5 0.00011 35.4 0.5 18 189-206 176-193 (234)
252 COG0437 HybA Fe-S-cluster-cont 54.0 3.7 8.1E-05 36.2 -0.3 17 189-205 99-115 (203)
253 COG1148 HdrA Heterodisulfide r 53.4 4.1 9E-05 40.8 -0.2 19 186-205 221-239 (622)
254 TIGR02745 ccoG_rdxA_fixG cytoc 52.7 4.3 9.2E-05 39.5 -0.2 17 189-205 230-246 (434)
255 TIGR03379 glycerol3P_GlpC glyc 52.0 4.4 9.5E-05 37.9 -0.3 18 188-205 50-67 (397)
256 PRK07569 bidirectional hydroge 51.7 4.1 8.9E-05 35.8 -0.5 19 189-207 189-207 (234)
257 PRK08764 ferredoxin; Provision 51.4 5.1 0.00011 32.5 0.1 17 189-205 114-130 (135)
258 TIGR01660 narH nitrate reducta 50.8 5.7 0.00012 39.3 0.3 18 188-205 212-229 (492)
259 COG2221 DsrA Dissimilatory sul 50.4 5.9 0.00013 37.2 0.4 19 187-205 198-216 (317)
260 PRK14993 tetrathionate reducta 50.1 5.4 0.00012 35.7 0.0 21 186-206 47-67 (244)
261 COG0247 GlpC Fe-S oxidoreducta 50.1 7.5 0.00016 35.7 1.0 22 185-206 53-74 (388)
262 PRK10882 hydrogenase 2 protein 49.6 4.5 9.7E-05 38.0 -0.6 24 183-206 38-61 (328)
263 TIGR03149 cyt_nit_nrfC cytochr 49.3 6.5 0.00014 34.6 0.4 17 189-205 124-140 (225)
264 TIGR03336 IOR_alpha indolepyru 49.3 5.7 0.00012 39.7 0.1 14 191-204 579-592 (595)
265 PRK13552 frdB fumarate reducta 49.2 5 0.00011 35.8 -0.3 19 187-205 203-221 (239)
266 TIGR01682 moaD molybdopterin c 49.1 42 0.00092 24.2 4.7 58 70-136 20-77 (80)
267 COG2104 ThiS Sulfur transfer p 48.8 50 0.0011 24.0 5.0 32 71-118 13-44 (68)
268 TIGR01582 FDH-beta formate deh 48.7 7.2 0.00016 35.8 0.6 17 189-205 123-139 (283)
269 PRK09898 hypothetical protein; 48.5 5.6 0.00012 34.4 -0.1 17 189-205 153-169 (208)
270 PRK13795 hypothetical protein; 48.0 6.6 0.00014 39.8 0.3 14 76-89 383-396 (636)
271 PRK09898 hypothetical protein; 47.9 6 0.00013 34.2 -0.0 17 189-205 180-196 (208)
272 PLN00129 succinate dehydrogena 47.6 5.7 0.00012 36.5 -0.2 18 188-205 242-259 (276)
273 TIGR00314 cdhA CO dehydrogenas 47.3 8.3 0.00018 40.3 0.9 17 189-205 436-452 (784)
274 TIGR02951 DMSO_dmsB DMSO reduc 46.7 8.1 0.00017 31.8 0.6 17 189-205 94-110 (161)
275 TIGR03294 FrhG coenzyme F420 h 46.4 7.4 0.00016 34.4 0.3 19 187-205 171-189 (228)
276 PRK15033 tricarballylate utili 46.4 13 0.00028 35.9 1.9 28 179-206 22-49 (389)
277 PRK10882 hydrogenase 2 protein 46.1 7.6 0.00016 36.4 0.4 18 188-205 141-158 (328)
278 TIGR02060 aprB adenosine phosp 45.5 6.9 0.00015 32.0 -0.0 18 188-205 6-28 (132)
279 PRK14993 tetrathionate reducta 44.9 8.6 0.00019 34.4 0.5 17 189-205 129-145 (244)
280 TIGR03294 FrhG coenzyme F420 h 42.6 8.8 0.00019 33.9 0.2 19 188-206 201-219 (228)
281 cd01916 ACS_1 Acetyl-CoA synth 42.3 11 0.00024 39.1 0.9 17 189-205 402-418 (731)
282 TIGR00276 iron-sulfur cluster 42.2 12 0.00025 34.4 0.9 19 190-208 159-177 (282)
283 PRK10330 formate dehydrogenase 41.4 10 0.00022 31.9 0.4 18 189-206 86-103 (181)
284 COG2768 Uncharacterized Fe-S c 41.1 9.8 0.00021 36.0 0.2 18 190-207 193-210 (354)
285 TIGR03224 benzo_boxA benzoyl-C 40.2 8.7 0.00019 36.7 -0.2 17 190-206 39-55 (411)
286 PRK00941 acetyl-CoA decarbonyl 39.9 11 0.00025 39.3 0.5 17 189-205 441-457 (781)
287 cd01764 Urm1 Urm1-like ubuitin 39.8 88 0.0019 23.9 5.4 64 69-135 22-89 (94)
288 PRK12771 putative glutamate sy 39.7 8.9 0.00019 37.7 -0.2 16 189-204 540-555 (564)
289 cd07030 RNAP_D D subunit of Ar 39.3 11 0.00025 33.5 0.4 17 188-204 197-213 (259)
290 TIGR03315 Se_ygfK putative sel 39.3 11 0.00023 40.6 0.3 16 191-206 922-937 (1012)
291 PRK07118 ferredoxin; Validated 38.6 9.4 0.0002 34.9 -0.3 17 190-206 139-155 (280)
292 PRK13795 hypothetical protein; 37.9 9.9 0.00022 38.5 -0.2 18 188-205 579-596 (636)
293 COG1148 HdrA Heterodisulfide r 37.7 15 0.00032 37.0 0.9 20 188-207 585-604 (622)
294 TIGR02486 RDH reductive dehalo 36.9 12 0.00026 34.8 0.1 18 190-207 205-222 (314)
295 COG0493 GltD NADPH-dependent g 36.8 24 0.00052 34.5 2.2 23 184-206 17-40 (457)
296 COG2768 Uncharacterized Fe-S c 36.1 13 0.00029 35.1 0.3 32 188-219 219-251 (354)
297 PRK07118 ferredoxin; Validated 35.4 14 0.00029 33.8 0.2 18 188-205 166-183 (280)
298 PRK06567 putative bifunctional 34.3 18 0.00038 39.1 0.9 46 77-122 944-999 (1028)
299 KOG3256 NADH:ubiquinone oxidor 34.2 16 0.00034 31.8 0.4 18 188-205 109-126 (212)
300 PRK05863 sulfur carrier protei 33.7 92 0.002 21.9 4.3 44 67-128 9-54 (65)
301 smart00797 AHS2 Allophanate hy 33.2 30 0.00066 31.7 2.2 46 92-137 38-84 (280)
302 PRK12809 putative oxidoreducta 32.0 28 0.0006 35.1 1.8 23 184-206 202-227 (639)
303 PRK06944 sulfur carrier protei 31.8 1.5E+02 0.0033 20.2 5.1 29 72-117 12-40 (65)
304 TIGR00276 iron-sulfur cluster 31.7 19 0.00041 32.9 0.6 18 189-206 207-225 (282)
305 PRK13030 2-oxoacid ferredoxin 31.7 19 0.00042 39.3 0.7 23 183-205 655-678 (1159)
306 PRK09193 indolepyruvate ferred 31.6 19 0.00041 39.3 0.6 23 183-205 669-692 (1165)
307 TIGR00724 urea_amlyse_rel biot 31.0 27 0.00058 32.7 1.4 46 92-137 60-107 (314)
308 PRK07860 NADH dehydrogenase su 31.0 19 0.00042 37.3 0.6 22 191-212 191-212 (797)
309 cd07030 RNAP_D D subunit of Ar 30.9 17 0.00037 32.4 0.1 18 189-206 168-185 (259)
310 TIGR01318 gltD_gamma_fam gluta 30.8 11 0.00025 36.2 -1.1 29 176-206 28-58 (467)
311 PRK12809 putative oxidoreducta 30.4 19 0.00041 36.2 0.4 18 188-205 83-100 (639)
312 PF08882 Acetone_carb_G: Aceto 30.0 38 0.00082 27.3 1.9 22 136-157 90-111 (112)
313 PRK09129 NADH dehydrogenase su 29.9 21 0.00046 36.7 0.6 22 191-212 185-206 (776)
314 TIGR01973 NuoG NADH-quinone ox 29.5 21 0.00046 35.5 0.6 22 191-212 183-204 (603)
315 PRK11749 dihydropyrimidine deh 29.4 13 0.00029 35.4 -0.9 24 183-206 33-58 (457)
316 PRK12769 putative oxidoreducta 29.3 18 0.00039 36.3 0.0 17 189-205 84-100 (654)
317 KOG0063 RNAse L inhibitor, ABC 29.0 19 0.00041 35.9 0.1 17 190-206 50-66 (592)
318 PRK13029 2-oxoacid ferredoxin 27.8 24 0.00053 38.6 0.6 23 183-205 683-706 (1186)
319 PRK00783 DNA-directed RNA poly 27.4 20 0.00044 32.0 -0.0 17 189-205 168-184 (263)
320 TIGR01687 moaD_arch MoaD famil 27.3 2.2E+02 0.0048 20.6 5.6 66 68-137 18-86 (88)
321 COG1152 CdhA CO dehydrogenase/ 27.1 31 0.00068 35.4 1.2 21 185-205 395-415 (772)
322 PRK09130 NADH dehydrogenase su 26.6 27 0.00057 35.8 0.6 22 191-212 186-207 (687)
323 TIGR02064 dsrA sulfite reducta 26.5 23 0.00049 34.2 0.1 18 188-205 270-287 (402)
324 PRK12771 putative glutamate sy 26.5 21 0.00046 35.1 -0.1 21 186-206 500-526 (564)
325 KOG4060 Uncharacterized conser 26.2 47 0.001 28.4 2.0 49 6-54 2-61 (176)
326 TIGR02951 DMSO_dmsB DMSO reduc 25.8 21 0.00046 29.3 -0.2 18 189-206 121-147 (161)
327 PRK08166 NADH dehydrogenase su 25.7 29 0.00063 36.1 0.7 22 191-212 190-211 (847)
328 PRK06488 sulfur carrier protei 24.6 2.3E+02 0.0051 19.5 5.1 47 76-137 14-63 (65)
329 TIGR01582 FDH-beta formate deh 24.3 13 0.00028 34.1 -1.9 23 184-206 23-45 (283)
330 PRK12769 putative oxidoreducta 23.7 34 0.00074 34.4 0.8 23 184-206 219-244 (654)
331 COG1152 CdhA CO dehydrogenase/ 23.5 35 0.00077 35.0 0.8 17 188-204 436-452 (772)
332 PRK00783 DNA-directed RNA poly 23.4 28 0.0006 31.1 0.1 17 188-204 197-213 (263)
333 PRK12810 gltD glutamate syntha 23.1 45 0.00098 32.0 1.5 23 184-206 38-62 (471)
334 PF14451 Ub-Mut7C: Mut7-C ubiq 22.7 2.2E+02 0.0048 21.3 4.8 56 65-137 22-77 (81)
335 COG1984 DUR1 Allophanate hydro 22.5 62 0.0013 30.5 2.2 46 92-137 59-105 (314)
336 PF14691 Fer4_20: Dihydroprymi 22.0 34 0.00073 27.1 0.3 22 185-206 17-40 (111)
337 PRK05528 methionine sulfoxide 21.7 2.4E+02 0.0052 23.8 5.4 56 56-111 38-93 (156)
338 PRK10330 formate dehydrogenase 21.6 30 0.00065 29.0 -0.1 29 189-220 128-162 (181)
339 cd01818 TIAM1_RBD Ubiquitin do 21.5 97 0.0021 23.5 2.6 25 67-92 11-37 (77)
340 TIGR03287 methan_mark_16 putat 20.8 34 0.00073 33.1 0.1 20 187-206 299-320 (391)
341 PRK12831 putative oxidoreducta 20.6 45 0.00098 32.1 0.9 23 184-206 34-58 (464)
342 COG2878 Predicted NADH:ubiquin 20.4 34 0.00074 30.1 0.0 20 187-206 112-131 (198)
343 TIGR03336 IOR_alpha indolepyru 20.0 36 0.00077 34.1 0.1 19 188-206 548-568 (595)
344 TIGR03478 DMSO_red_II_bet DMSO 20.0 39 0.00085 31.9 0.3 18 188-205 187-213 (321)
No 1
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=100.00 E-value=8.8e-64 Score=450.19 Aligned_cols=224 Identities=67% Similarity=1.154 Sum_probs=192.7
Q ss_pred ChhhhHHhhhhccccccccchhhhhhhhhhhhhhhccCCccCCCCceEEEEEEeeCCCCCCCCceEEEEEeecCCChhHH
Q 026956 1 MATGLIRRAISSSAAVAQPARLLTARFHASEAEAQKVEPKASANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVL 80 (230)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvL 80 (230)
||.||+||....-|..-.||.-..| +..| ..++..+.+++.++++|+|+||||+++.+||||+|+|++.++++|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tVL 76 (276)
T PLN00129 1 MAAGLLRRLAGAKAGLLAPAAAASA---AASA-ETKASSKGSKPSNLKEFQIYRWNPDNPGKPHLQSYKVDLNDCGPMVL 76 (276)
T ss_pred Cchhhhhhhhcccccccccchhhhh---hhcc-cccccCCCCCCCceEEEEEEeeCCCCCCCceeEEEEeCCCCCCchHH
Confidence 8999999987666655555532221 1111 13445566677789999999999999889999999999874379999
Q ss_pred HHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeeccccccccCCC-CceEEeeCCCCcceeeeeechhhHHHHhhhc
Q 026956 81 DALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSG-SASTITPLPHMFVIKDLVVDMTNFYNQYKSI 159 (230)
Q Consensus 81 daL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~~~~-~~itIEPL~~~pvirDLvVD~~~f~~k~k~v 159 (230)
|+|++|++++||+|+||++||+|+||||+|+|||+|+|||.|++.+.+ ++||||||++||||||||||++.||++|+++
T Consensus 77 d~L~~Ik~~~D~sLsfr~sCr~giCGsCam~ING~p~LAC~t~v~~~~~~~i~iePl~~fpVirDLvVD~~~f~~klk~v 156 (276)
T PLN00129 77 DVLIKIKNEQDPSLTFRRSCREGICGSCAMNIDGKNTLACLTKIDRDESGPTTITPLPHMFVIKDLVVDMTNFYQQYKSI 156 (276)
T ss_pred HHHHHHHHcCCCCeEEeccCCCCCCCCCeeEECCcccccccccHhhcCCCcEEEEECCCCCeeeecccccHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998754 6899999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCHHHHHHHhcHHHhhhhchhhhcccCcccCCCCCcCHHHHHHHHHhcccc
Q 026956 160 EPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANSIGLSN 228 (230)
Q Consensus 160 kp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~CI~CG~C~saCP~~~~~~~~FlGPaal~~a~R~~~~~ 228 (230)
+||++++..+.....+.+|+|+++++++.+..||+||+|+++||+++.++++|+||++++++|||+.|+
T Consensus 157 ~p~l~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~CG~C~saCPv~~~~~~~flGP~~l~~a~R~~~D~ 225 (276)
T PLN00129 157 EPWLKTKKPPEDGQKEHLQSKEDRAKLDGMYECILCACCSTSCPSYWWNPEKFLGPAALLHAYRWISDS 225 (276)
T ss_pred cccccCCCCCCCCccccCCCHHHHHHHhhhhhCccccccccccCCCcccCcccccHHHHHHHHHhcCCc
Confidence 999997654432234799999999999999999999999999999977767799999999999998874
No 2
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=100.00 E-value=9.7e-63 Score=434.00 Aligned_cols=178 Identities=53% Similarity=0.974 Sum_probs=166.8
Q ss_pred ceEEEEEEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecccccccc
Q 026956 46 DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS 125 (230)
Q Consensus 46 ~~v~lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~ 125 (230)
++++|+|+||||+.+ +|||++|+|++++ ++||||+|.+||+++||+|+||++||+||||||+|+|||+|+|||+|++.
T Consensus 1 ~~~~~~i~R~~p~~~-~p~~~~yev~~~~-~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~prLAC~t~~~ 78 (234)
T COG0479 1 MTLKFKIYRYNPDDD-KPYWQTYEVPYDE-GMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGKPRLACKTLMK 78 (234)
T ss_pred CcEEEEEEEECCCCC-CcceEEEEecCCC-CCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEECCccccchhchhh
Confidence 368999999999988 9999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred CCCC-ceEEeeCCCCcceeeeeechhhHHHHhhhcccccccCCCCCCCCCCCCCCHHHHHHHhcHHHhhhhchhhhcccC
Q 026956 126 PSGS-ASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPS 204 (230)
Q Consensus 126 ~~~~-~itIEPL~~~pvirDLvVD~~~f~~k~k~vkp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~CI~CG~C~saCP~ 204 (230)
+..+ +||||||++||||||||||++.||++|++++||++.+.++. +++ .+|+||+++++++++.||+||+|+++||+
T Consensus 79 ~~~~~~i~iePL~~fpVIkDLVVD~~~f~~~~~~ikp~~~~~~~~~-~~~-~~q~pe~~~~~~~~~~CI~Cg~C~s~CP~ 156 (234)
T COG0479 79 DLEEGVITIEPLPNFPVIRDLVVDMEEFYEKLRKIKPYLIRDDEPD-PGE-RLQSPEEREKLDELSECILCGCCTAACPS 156 (234)
T ss_pred hccCCceEEEECCCCCceeeeeeccHHHHHhhhccccceecCCcCC-Ccc-ccCCHHHHHHHHhhhhccccchhhhhCCc
Confidence 7433 79999999999999999999999999999999999964443 333 99999999999999999999999999999
Q ss_pred cccCCCCCcCHHHHHHHHHhcccc
Q 026956 205 YWWTSEAYLGPAALLHANSIGLSN 228 (230)
Q Consensus 205 ~~~~~~~FlGPaal~~a~R~~~~~ 228 (230)
++++ ++|+||++|++||||++|+
T Consensus 157 ~~~~-~~f~GPa~l~~a~R~~~D~ 179 (234)
T COG0479 157 IWWN-PDFLGPAALRQAYRFLADS 179 (234)
T ss_pred cccc-cCCcCHHHHHHHHHHhcCC
Confidence 9987 5899999999999999997
No 3
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=3.3e-61 Score=425.34 Aligned_cols=183 Identities=31% Similarity=0.592 Sum_probs=167.2
Q ss_pred CCceEEEEEEeeCCC-CCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeeccccc
Q 026956 44 NTDTKKFQIYRWNPD-SPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLT 122 (230)
Q Consensus 44 ~~~~v~lkI~Rfdp~-~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t 122 (230)
++++++|+|+||||+ .+++|||++|+|++++ ++||||+|++|++++||+|+||+|||+|+||||+|+|||+|+|||.|
T Consensus 1 ~~~~~~~~i~R~~p~~~~~~~~~~~y~v~~~~-~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~ING~~~LAC~t 79 (239)
T PRK13552 1 MGRTLTFNIFRYNPQDPGSKPHMVTYQLEETP-GMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVINGRPTLACRT 79 (239)
T ss_pred CCceEEEEEEeeCCCCCCCCcceEEEEecCCC-CCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEECCeEhhhhhc
Confidence 467899999999994 5778999999999987 99999999999999999999999999999999999999999999999
Q ss_pred cccCCC-CceEEeeCCCCcceeeeeechhhHHHHh-hhcccccccCCCCCCCCCCCCCCHHHHHHHhcHHHhhhhchhhh
Q 026956 123 KISPSG-SASTITPLPHMFVIKDLVVDMTNFYNQY-KSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCST 200 (230)
Q Consensus 123 ~v~~~~-~~itIEPL~~~pvirDLvVD~~~f~~k~-k~vkp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~CI~CG~C~s 200 (230)
++.+.+ ++|+||||++||||||||||++.||+++ ++++||++++....++..+.+|+|+++++++.+++||+||+|++
T Consensus 80 ~v~~~~~~~i~iePl~~fpVirDLvVD~~~~~~~~~~~v~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~s 159 (239)
T PRK13552 80 LTSDYPDGVITLMPLPVFKLIGDLSVNTGKWFREMSERVESWIHTDKEFDIHRLEERMEPEEADEIYELDRCIECGCCVA 159 (239)
T ss_pred cHhhcCCCcEEEEECCCCCcceeCccccHHHHHHHHHhhcCccccCCCCCCcccccCCCHHHHHHhhchhhccccchhHh
Confidence 998743 4799999999999999999999999999 89999998754332122468999999999999999999999999
Q ss_pred cccCcccCCCCCcCHHHHHHHHHhcccc
Q 026956 201 SCPSYWWTSEAYLGPAALLHANSIGLSN 228 (230)
Q Consensus 201 aCP~~~~~~~~FlGPaal~~a~R~~~~~ 228 (230)
+||+++.+ ++|+||++++++|||.+|+
T Consensus 160 aCP~~~~~-~~f~GP~~~~~a~r~~~d~ 186 (239)
T PRK13552 160 ACGTKQMR-EDFVGAVGLNRIARFELDP 186 (239)
T ss_pred hCCCCccC-CCccChHHHHHHHHHhhCC
Confidence 99999866 6899999999999999886
No 4
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=1.9e-59 Score=413.69 Aligned_cols=181 Identities=49% Similarity=0.988 Sum_probs=167.7
Q ss_pred CceEEEEEEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeeccccccc
Q 026956 45 TDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKI 124 (230)
Q Consensus 45 ~~~v~lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v 124 (230)
..+++|+|+||||+++.+|||++|+|++.+.++||||+|++|+ ++||+|+||+|||+|+||||+|+|||+|+|||+|++
T Consensus 2 ~~~~~~~i~R~~~~~~~~~~~~~y~v~~~~~~~tvld~L~~ik-~~d~~l~fr~sCr~giCGsCa~~iNG~~~LaC~t~~ 80 (235)
T PRK12575 2 ADTRILHIYRYDPDDDAAPRMQRYEIAPRAEDRMLLDVLGRVK-AQDETLSYRRSCREGICGSDAMNINGRNGLACLTNM 80 (235)
T ss_pred CceEEEEEEeeCCCCCCCceeEEEEecCCCCCCcHHHHHHHHH-hcCCCeeeeccCCCCCCCCCeeEECCeEcchhhCcH
Confidence 4689999999999999999999999998753689999999999 789999999999999999999999999999999999
Q ss_pred cCCCCceEEeeCCCCcceeeeeechhhHHHHhhhcccccccCCCCCCCCCCCCCCHHHHHHHhcHHHhhhhchhhhcccC
Q 026956 125 SPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPS 204 (230)
Q Consensus 125 ~~~~~~itIEPL~~~pvirDLvVD~~~f~~k~k~vkp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~CI~CG~C~saCP~ 204 (230)
.+.++.|+||||++||||||||||+++||++|++++||++++... +..+.+|+|+++++++.+..||+||+|+++||+
T Consensus 81 ~~~~~~i~iePl~~~pvikDLvvD~~~~~~~~~~~~p~l~~~~~~--~~~~~~~~p~~~~~~~~~~~CI~CG~C~s~CP~ 158 (235)
T PRK12575 81 QALPREIVLRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLINDTVP--PERERLQTPQEREQLDGLYECILCACCSTACPS 158 (235)
T ss_pred hHcCCCEEEeECCCCCccccceecCHHHHHHHHhccCccccCCCC--ccccccCCHHHHHHHHhhhhCcccccccccccC
Confidence 876567999999999999999999999999999999999877543 245789999999999999999999999999999
Q ss_pred cccCCCCCcCHHHHHHHHHhcccc
Q 026956 205 YWWTSEAYLGPAALLHANSIGLSN 228 (230)
Q Consensus 205 ~~~~~~~FlGPaal~~a~R~~~~~ 228 (230)
++.++++|+||++++++|||+.|+
T Consensus 159 ~~~~~~~f~GP~~~~~a~r~~~D~ 182 (235)
T PRK12575 159 YWWNPDKFVGPAGLLQAYRFIADS 182 (235)
T ss_pred ccccCCCcCCHHHHHHHHHHHhCC
Confidence 987666799999999999999886
No 5
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=2.7e-59 Score=415.53 Aligned_cols=180 Identities=25% Similarity=0.511 Sum_probs=165.9
Q ss_pred CceEEEEEEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhhc-------cCCCcccccCcCCCccCcceEEeCCeee
Q 026956 45 TDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSE-------IDPSLTFRRSCREGICGSCAMNIDGCNG 117 (230)
Q Consensus 45 ~~~v~lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~-------~d~~l~fr~gCr~GiCGsCaV~ING~~~ 117 (230)
+++++|+|+|||| .+.+||||+|+|++++ ++||||+|++|+++ +|++|+||+|||+|+||||+|+|||+|+
T Consensus 3 ~~~~~~~i~R~~~-~~~~~~~q~y~v~~~~-~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING~p~ 80 (249)
T PRK08640 3 EKTVRLIIKRQDG-PDSKPYWEEFEIPYRP-NMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVINGKPR 80 (249)
T ss_pred CcEEEEEEEeeCC-CCCCceeEEEEecCCC-CCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECCccc
Confidence 4689999999999 6778999999999987 99999999999974 5778999999999999999999999999
Q ss_pred ccccccccCCCCceEEeeCCCCcceeeeeechhhHHHHhhhcccccccCCCCCCCCCCCCCCHHHHHHHhcHHHhhhhch
Q 026956 118 LACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCAC 197 (230)
Q Consensus 118 LAC~t~v~~~~~~itIEPL~~~pvirDLvVD~~~f~~k~k~vkp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~CI~CG~ 197 (230)
|||+|++.+.+++||||||++||||||||||+++||++|++++||++++.... ++++..|+|+++++++.++.||+||+
T Consensus 81 LAC~t~v~~~~~~i~iePl~~fpVikDLvVD~~~~~~~~~~~~p~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~CI~CG~ 159 (249)
T PRK08640 81 QACTALIDQLEQPIRLEPMSTFPVVRDLQVDRSRMFDNLKRVKAWIPIDGTYD-LGPGPRMPEEKRQWAYELSKCMTCGC 159 (249)
T ss_pred hhhhChHHHcCCcEEEEECCCCCccccCcEEChHHHHHHHhhCCccccCCCCC-CCcccCCCHHHHHHHhhhhhccCcCc
Confidence 99999998766789999999999999999999999999999999999876532 34567899999999999999999999
Q ss_pred hhhcccCcccCCCCCcCHHHHHHHHHhcccc
Q 026956 198 CSTSCPSYWWTSEAYLGPAALLHANSIGLSN 228 (230)
Q Consensus 198 C~saCP~~~~~~~~FlGPaal~~a~R~~~~~ 228 (230)
|+++||++..+ ++|+||++++++|||.+|+
T Consensus 160 C~saCP~~~~~-~~f~GP~~l~ka~r~~~d~ 189 (249)
T PRK08640 160 CLEACPNVNEK-SDFIGPAAISQVRLFNAHP 189 (249)
T ss_pred ccccCCCCccC-CCccChHHHHHHHHHhcCc
Confidence 99999999866 6899999999999999886
No 6
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=2.4e-56 Score=397.39 Aligned_cols=177 Identities=28% Similarity=0.579 Sum_probs=162.2
Q ss_pred CceEEEEEEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeeccccccc
Q 026956 45 TDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKI 124 (230)
Q Consensus 45 ~~~v~lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v 124 (230)
+-+++|+|+||||+. +|||+|+|++++ ++||||+|++|++++||+|+||+||++|+||||+|+|||+|+|||+|++
T Consensus 2 ~~~~~~~I~R~~~~~---~~~q~y~v~~~~-~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~InG~p~laC~t~~ 77 (251)
T PRK12386 2 GYTAKFRVWRGDASG---GELQDYTVEVNE-GEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEINGRPRLMCMTRM 77 (251)
T ss_pred CcEEEEEEEcCCCCC---CceEEEEEeCCC-CCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEECccEeccHHhHH
Confidence 457999999999763 599999999987 9999999999999999999999999999999999999999999999999
Q ss_pred cC--CCCceEEeeCCCCcceeeeeechhhHHHHhhhcccccccCCCCCCCCCCCCCCHHHHHHHhcHHHhhhhchhhhcc
Q 026956 125 SP--SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSC 202 (230)
Q Consensus 125 ~~--~~~~itIEPL~~~pvirDLvVD~~~f~~k~k~vkp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~CI~CG~C~saC 202 (230)
.+ +++++|||||++||||||||||++.||++|++++||+.++... + .+.+|+|+++++++.+++||+||+|+|+|
T Consensus 78 ~~~~~~~~itiepl~~fpVikDLvVD~~~~~~~l~~i~~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~CI~CG~C~s~C 154 (251)
T PRK12386 78 STFDEDETVTVTPMRTFPVIRDLVTDVSFNYEKAREIPSFTPPKDLQ--P-GEYRMQQVDVERSQEFRKCIECFLCQNVC 154 (251)
T ss_pred HHhCCCCeEEEccCCCCCccccceEEcHHHHHHHHhcCCcccCCCCC--c-cccCCCHHHHHHHhchhhcccCCcccCcC
Confidence 74 4478999999999999999999999999999999999865443 1 46889999999999999999999999999
Q ss_pred cCcccC---CCCCcCHHHHHHHHHhcccc
Q 026956 203 PSYWWT---SEAYLGPAALLHANSIGLSN 228 (230)
Q Consensus 203 P~~~~~---~~~FlGPaal~~a~R~~~~~ 228 (230)
|+++.+ +++|+||++++++|||++|+
T Consensus 155 Pv~~~~~~~~~~f~GP~~~~~a~r~~~D~ 183 (251)
T PRK12386 155 HVVRDHEENKPAFAGPRFLMRIAELEMHP 183 (251)
T ss_pred CcccccCCCcccccCHHHHHHHHHhhcCc
Confidence 999764 35799999999999999984
No 7
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=7.8e-56 Score=392.06 Aligned_cols=180 Identities=31% Similarity=0.614 Sum_probs=167.5
Q ss_pred ceEEEEEEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecccccccc
Q 026956 46 DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS 125 (230)
Q Consensus 46 ~~v~lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~ 125 (230)
++++|+||||||+++..|||++|+|++++ ++|||++|++|++++|++|+||.||++|+||+|+|+|||+++|||.|++.
T Consensus 5 ~~v~~~i~R~~~~~~~~~~~~~~~v~~~~-~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~InG~~~laC~t~~~ 83 (244)
T PRK12385 5 KNLKIEVLRYNPEVDTEPHSQTYEVPYDE-TTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLR 83 (244)
T ss_pred cEEEEEEEeeCCCCCCCceeEEEEeeCCC-CCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceECccChhhHhhHHH
Confidence 47999999999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEeeCCCCcceeeeeechhhHHHHhhhcccccccCCCCCCCCCCCCCCHHHHHHHhcHHHhhhhchhhhcccCc
Q 026956 126 PSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSY 205 (230)
Q Consensus 126 ~~~~~itIEPL~~~pvirDLvVD~~~f~~k~k~vkp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~CI~CG~C~saCP~~ 205 (230)
+.++.++||||++|||||||+||+++||+||++++||+.++.... ++.+.+|+|++++++..+..||+||+|+++||++
T Consensus 84 ~~~~~~~iePl~~fpvikDLvvD~~~~~~k~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP~~ 162 (244)
T PRK12385 84 DYTGGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNDRTP-DDGPNKQTPAQMAKYHQFSGCINCGLCYAACPQF 162 (244)
T ss_pred HcCCCeEEeeCCCCCeeeeCeeecHHHHHHHHHhcCeeeCCCCCC-CcccccCCHHHHHHHHHHHhcCcCccccCcCcCc
Confidence 866679999999999999999999999999999999998765433 3346789999999999999999999999999999
Q ss_pred ccCCCCCcCHHHHHHHHHhcccc
Q 026956 206 WWTSEAYLGPAALLHANSIGLSN 228 (230)
Q Consensus 206 ~~~~~~FlGPaal~~a~R~~~~~ 228 (230)
+.+ ++|+||++|+++|||..|+
T Consensus 163 ~~~-~~y~GP~~l~~a~r~~~d~ 184 (244)
T PRK12385 163 GLN-PEFIGPAAITLAHRYNLDS 184 (244)
T ss_pred ccC-CCCCCHHHHHHHHHHhhcC
Confidence 866 6899999999999998764
No 8
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=2.4e-53 Score=389.99 Aligned_cols=178 Identities=37% Similarity=0.680 Sum_probs=164.6
Q ss_pred ceEEEEEEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecccccccc
Q 026956 46 DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS 125 (230)
Q Consensus 46 ~~v~lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~ 125 (230)
++|+|+|+||||+. +|||++|+|++++ ++||||+|++|+.++||+|+|+.+|++|+||+|+|+|||+++|||.|.+.
T Consensus 1 ~~i~~~i~R~~~~~--~p~~~~~~v~~~~-~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~ 77 (329)
T PRK12577 1 MEVLFKILRQKQNS--APYVQTYTLEVEP-GNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVG 77 (329)
T ss_pred CeEEEEEEeeCCCC--CCeEEEEEEECCC-CChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchh
Confidence 36899999999974 7999999999987 99999999999999999999999999999999999999999999999997
Q ss_pred CC-----------CCceEEeeCCCCcceeeeeechhhHHHHhhhcccccccCCCCCCCCCCCCCCHHHHHHHhcHHHhhh
Q 026956 126 PS-----------GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECIL 194 (230)
Q Consensus 126 ~~-----------~~~itIEPL~~~pvirDLvVD~~~f~~k~k~vkp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~CI~ 194 (230)
++ +++||||||++||||||||||+++||++|++++||+.++.... ++++.+|+|+++++++.+..||+
T Consensus 78 ~~~~~~~~~~~~~~~~i~iePl~~~pvikDLvVD~~~~~~k~~~v~p~~~~~~~~~-~~~e~~~~p~~~~~~~~~~~Ci~ 156 (329)
T PRK12577 78 SELARLSDSNSGAIPEITIAPLGNMPVIKDLVVDMSSFWQNLEAVDPYVSTAARQV-PEREFLQTPEERSKLDQTGNCIL 156 (329)
T ss_pred hhhccccccccCCCCeEEEEECCCCCccccceeccHHHHHHHHhccCccccCCCCC-CcccccCCHHHHHHHHHhhhCcc
Confidence 41 3689999999999999999999999999999999999876533 45679999999999999999999
Q ss_pred hchhhhcccCcccCCCCCcCHHHHHHHHHhcccc
Q 026956 195 CACCSTSCPSYWWTSEAYLGPAALLHANSIGLSN 228 (230)
Q Consensus 195 CG~C~saCP~~~~~~~~FlGPaal~~a~R~~~~~ 228 (230)
||+|+++||++..+ ++|+||++++++||++.|+
T Consensus 157 CG~C~s~CP~~~~~-~~f~GP~~~~~a~r~~~d~ 189 (329)
T PRK12577 157 CGACYSECNAREVN-PEFVGPHALAKAQRMVADS 189 (329)
T ss_pred cCcccccCCCCCcC-cCcCCHHHHHHHHHHhhCC
Confidence 99999999999876 6899999999999999875
No 9
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=100.00 E-value=3.7e-54 Score=374.47 Aligned_cols=194 Identities=65% Similarity=1.226 Sum_probs=177.9
Q ss_pred hccCCccCCCCceEEEEEEeeCCCCCC-CCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeC
Q 026956 35 QKVEPKASANTDTKKFQIYRWNPDSPS-KPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID 113 (230)
Q Consensus 35 ~~~~~~~~~~~~~v~lkI~Rfdp~~d~-~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~IN 113 (230)
+.+++++...++.-||.|+||||+... +|+.|+|+|+.++.|..|||+|..||+++||+|+||.|||+||||||+|.||
T Consensus 34 ~~a~~~~~~~~rlKtFeIYRwnPd~pg~kP~~Q~y~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~ 113 (288)
T KOG3049|consen 34 TEAQTAAATGPRLKTFEIYRWNPDNPGDKPHLQTYEVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIN 113 (288)
T ss_pred cccccccccCCccceEEEEecCCCCCCCCccceeeeecHHhcchHHHHHHHHhhcccCCceehhhhhhccccccceeccC
Confidence 344555555667779999999997655 9999999999987788999999999999999999999999999999999999
Q ss_pred CeeeccccccccC-CCCceEEeeCCCCcceeeeeechhhHHHHhhhcccccccCCCCCCC-CCCCCCCHHHHHHHhcHHH
Q 026956 114 GCNGLACLTKISP-SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMP-GKEIPQSKKDRAKLDGMYE 191 (230)
Q Consensus 114 G~~~LAC~t~v~~-~~~~itIEPL~~~pvirDLvVD~~~f~~k~k~vkp~l~~~~~~~~~-~~e~~~~pe~~~~~~~~~~ 191 (230)
|.+.|||...++. .++..+|-||+++-|+||||+|++.|+++|++++|||..++..... ++++.|+-+|+++++.+.+
T Consensus 114 G~NtLACi~kId~n~sK~~kIyPLPHmfvvkDLVpDm~~FY~QYksIqPwlqrk~~~~~~g~~q~lQS~~dR~kLDGlYE 193 (288)
T KOG3049|consen 114 GTNTLACICKIDQNESKSTKIYPLPHMFVVKDLVPDMTNFYAQYKSIEPWLQRKNPAKEPGKKQYLQSVEDRAKLDGLYE 193 (288)
T ss_pred CCceeEEEEeeccCCcccceeecCcceeeehhhcccHHHHHHHHhcccHHhhcCCcccCccHHHHHHhHHHHHhhccHHH
Confidence 9999999999985 5778999999999999999999999999999999999988765422 4689999999999999999
Q ss_pred hhhhchhhhcccCcccCCCCCcCHHHHHHHHHhcccc
Q 026956 192 CILCACCSTSCPSYWWTSEAYLGPAALLHANSIGLSN 228 (230)
Q Consensus 192 CI~CG~C~saCP~~~~~~~~FlGPaal~~a~R~~~~~ 228 (230)
||+|.||..+||.+|||.+.|+||++|.+|||+++|.
T Consensus 194 CILCACCsTSCPSYWWN~ekYLGPAvLmqAyRWiiDS 230 (288)
T KOG3049|consen 194 CILCACCSTSCPSYWWNSEKYLGPAVLMQAYRWIIDS 230 (288)
T ss_pred HHHHHHhcCCCcccccCcccccCHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999984
No 10
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=4.4e-53 Score=380.98 Aligned_cols=183 Identities=31% Similarity=0.547 Sum_probs=167.7
Q ss_pred CCCCceEEEEEEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecccc
Q 026956 42 SANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL 121 (230)
Q Consensus 42 ~~~~~~v~lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~ 121 (230)
-.+.++++|+||||||+. .|||++|+|++++ ++||||+|++|++++||+|+|+++|++|+||+|+|+|||+++|||.
T Consensus 3 ~~~~~~~~~~i~R~~~~~--~~~~~~~~v~~~~-~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING~~~laC~ 79 (279)
T PRK12576 3 QSPEKEVIFKVKRYDPEK--GSWWQEYKVKVDR-FTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGEPRLACK 79 (279)
T ss_pred CCCCcEEEEEEEecCCCC--CCeEEEEEEecCC-CCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECCcEecccc
Confidence 456789999999999985 4999999999987 9999999999998889999999999999999999999999999999
Q ss_pred ccccC----CCCceEEeeCCCCcceeeeeechhhHHHHhhhcccccccCCCCCCCCCCCCCCHHHHHHHhcHHHhhhhch
Q 026956 122 TKISP----SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCAC 197 (230)
Q Consensus 122 t~v~~----~~~~itIEPL~~~pvirDLvVD~~~f~~k~k~vkp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~CI~CG~ 197 (230)
|++.+ +++++|||||++||||||||||+++||+||++++||+.++.+...+..+..|+|+++++++++..||+||+
T Consensus 80 t~v~~~~~~~~~~~tiePl~~~~vikDLvvD~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~CI~CG~ 159 (279)
T PRK12576 80 TLVLDVAKKYNSVITIEPMDYFKVVKDLIVDFDEFYERMFKVKPRLYRAKEVLEGKAEHRLKPEDQKELWKFAQCIWCGL 159 (279)
T ss_pred CcHHHhhcCCCCcEEEEECCCCceeecceechHHHHHHHHhccceeccCccCCCCccccccCHHHHHHhhcchhCcccCc
Confidence 99974 46789999999999999999999999999999999999775433223478999999999999999999999
Q ss_pred hhhcccCcccCCCCCcCHHHHHHHHHhcccc
Q 026956 198 CSTSCPSYWWTSEAYLGPAALLHANSIGLSN 228 (230)
Q Consensus 198 C~saCP~~~~~~~~FlGPaal~~a~R~~~~~ 228 (230)
|+++||++..+ ++|+||++++++|||+.|+
T Consensus 160 C~~~CP~~~~~-~~flgP~~l~~a~r~~~d~ 189 (279)
T PRK12576 160 CVSACPVVAID-PEFLGPAAHAKGYRFLADP 189 (279)
T ss_pred ccccCCCcccc-CCcCCHHHHHHHHHHhcCc
Confidence 99999999866 6899999999999998885
No 11
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=2.2e-52 Score=366.11 Aligned_cols=177 Identities=62% Similarity=1.143 Sum_probs=164.1
Q ss_pred EEEEEeeCCCCCCCCceEEEEEeec-CCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeeccccccccCC
Q 026956 49 KFQIYRWNPDSPSKPELKEFEINLK-ECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPS 127 (230)
Q Consensus 49 ~lkI~Rfdp~~d~~~~~~~y~v~v~-~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~~~ 127 (230)
||+||||||+.|++|||+.|+|+++ + ++||||+|++++++++|+|+|+.||++|+||+|+|+|||+++|||.|++.+.
T Consensus 1 ~~~v~r~~~~~~~~~~~~~~~v~~~~~-~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~~laC~t~~~~~ 79 (232)
T PRK05950 1 TFKIYRYNPDVDANPRMQTYEVDVDEC-GPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLACITPISDL 79 (232)
T ss_pred CeEEEecCCCCCCCceeEEEEeCCCCC-CCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcCccchhChHhHc
Confidence 5899999999999999999999998 7 9999999999998899999999999999999999999999999999999874
Q ss_pred -CCceEEeeCCCCcceeeeeechhhHHHHhhhcccccccCCCCCCCCCCCCCCHHHHHHHhcHHHhhhhchhhhcccCcc
Q 026956 128 -GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYW 206 (230)
Q Consensus 128 -~~~itIEPL~~~pvirDLvVD~~~f~~k~k~vkp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~CI~CG~C~saCP~~~ 206 (230)
++++|||||++||||||||||+++||+|+++++||+.++... +..+..|+|++++++..+..||+||.|+++||++.
T Consensus 80 ~~~~~tiepl~~~~vikDLvvD~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~ 157 (232)
T PRK05950 80 KKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLINDTPP--PARERLQSPEDREKLDGLYECILCACCSTSCPSFW 157 (232)
T ss_pred CCCeEEEEECCCCCeeeeceeehHHHHHHHHhccCeecCCCCC--CchhccCCHHHHHHHHhHHhccccccccccCCccc
Confidence 789999999999999999999999999999999999876543 23467899999999999999999999999999997
Q ss_pred cCCCCCcCHHHHHHHHHhcccc
Q 026956 207 WTSEAYLGPAALLHANSIGLSN 228 (230)
Q Consensus 207 ~~~~~FlGPaal~~a~R~~~~~ 228 (230)
.+++.|+||++++++||++.|.
T Consensus 158 ~~~~~~~gp~~l~~~~r~~~d~ 179 (232)
T PRK05950 158 WNPDKFLGPAALLQAYRFIADS 179 (232)
T ss_pred cCCCCCCCHHHHHHHHHHhhCC
Confidence 6655699999999999997764
No 12
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=100.00 E-value=2.4e-51 Score=365.03 Aligned_cols=169 Identities=25% Similarity=0.501 Sum_probs=148.7
Q ss_pred eEEEEEEeeCCCCCCCCceEEEEEe-ecCCChhHHHHHHHhhhcc----CCCcccccCcCCCccCcceEEeCCee-----
Q 026956 47 TKKFQIYRWNPDSPSKPELKEFEIN-LKECGPMVLDALIKIKSEI----DPSLTFRRSCREGICGSCAMNIDGCN----- 116 (230)
Q Consensus 47 ~v~lkI~Rfdp~~d~~~~~~~y~v~-v~~~~~TvLdaL~~i~~~~----d~~l~fr~gCr~GiCGsCaV~ING~~----- 116 (230)
+++|+|+|||+ .+.+||||+|+|+ +++ ++||||+|.+|++++ +++|+||+|||+|+||||+|+|||+|
T Consensus 2 ~~~~~i~R~~~-~~~~~~~q~y~v~~~~~-~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~ING~p~~~~~ 79 (250)
T PRK07570 2 KLTLKIWRQKG-PDDKGKFETYEVDDISP-DMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVINGRPHGPDR 79 (250)
T ss_pred eEEEEEEecCC-CCCCceeEEEEecCCCC-CCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEECCccCCCCc
Confidence 68999999996 4668999999999 777 999999999998765 34699999999999999999999999
Q ss_pred -eccccccccC--CCCceEEeeCC--CCcceeeeeechhhHHHHhhhcccccccCCCCCCCCCCCCCCHHHHHHHhcHHH
Q 026956 117 -GLACLTKISP--SGSASTITPLP--HMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYE 191 (230)
Q Consensus 117 -~LAC~t~v~~--~~~~itIEPL~--~~pvirDLvVD~~~f~~k~k~vkp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~ 191 (230)
+|||+|++.+ ++++||||||+ +||||||||||++.| +++++++||+.++....+++.+.+|+|+++++++.++.
T Consensus 80 ~~LAC~t~~~~~~~~~~i~iePl~~~~fpvikDLvVD~~~~-~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (250)
T PRK07570 80 GTTTCQLHMRSFKDGDTITIEPWRAAAFPVIKDLVVDRSAL-DRIIQAGGYVSVNTGGAPDANAIPVPKEDADRAFDAAA 158 (250)
T ss_pred ccchhhhhhhhcCCCCeEEEEECCCCCCCeeeeceeecHHH-HHHHhcCCeEecCCCCCCCccccCCCHHHHHhhhCccc
Confidence 9999999974 34689999998 999999999999996 99999999999765333233578999999999999999
Q ss_pred hhhhchhhhcccCcccCCCCCcCHHHHHHH
Q 026956 192 CILCACCSTSCPSYWWTSEAYLGPAALLHA 221 (230)
Q Consensus 192 CI~CG~C~saCP~~~~~~~~FlGPaal~~a 221 (230)
||+||+|+++||+++ . ++|+||++ +++
T Consensus 159 CI~CG~C~saCP~~~-~-~~f~Gp~~-~~~ 185 (250)
T PRK07570 159 CIGCGACVAACPNGS-A-MLFTGAKV-SHL 185 (250)
T ss_pred cCCCcccccccCCcc-c-ccccchhh-hhh
Confidence 999999999999997 3 57999876 444
No 13
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=100.00 E-value=1e-50 Score=352.87 Aligned_cols=174 Identities=51% Similarity=0.955 Sum_probs=161.0
Q ss_pred EEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeeccccccccC-CCCc
Q 026956 52 IYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP-SGSA 130 (230)
Q Consensus 52 I~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~~-~~~~ 130 (230)
||||||+.+++|||++|+|++++ ++|||++|++|+++++|+|+|+.+|++|+||+|+|+|||+++|||.|++.+ |.++
T Consensus 1 i~R~~~~~~~~~~~~~~~v~~~~-~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~~ 79 (220)
T TIGR00384 1 VLRFNPDVDEKPHLQSYEVPADE-GMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQPV 79 (220)
T ss_pred CcCcCCCCCCCceeEEEEEeCCC-CCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCCCc
Confidence 79999999999999999999987 999999999999889999999999999999999999999999999999998 6557
Q ss_pred eEEeeCCCCcceeeeeechhhHHHHhhhcccccccCCCCCCCCCCCCCCHHHHHHHhcHHHhhhhchhhhcccCcccCCC
Q 026956 131 STITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSE 210 (230)
Q Consensus 131 itIEPL~~~pvirDLvVD~~~f~~k~k~vkp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~CI~CG~C~saCP~~~~~~~ 210 (230)
+|||||++||+||||+||++.||+||++++||+.++.... ++.+.+|+|++++++..+..||.||+|+++||++..+ +
T Consensus 80 ~~iepl~~~pvikDLvvD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~~-~ 157 (220)
T TIGR00384 80 MKIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLIRKSQPE-PEGEFLQTPEQREKLDQLSGCILCGCCYSSCPAFWWN-P 157 (220)
T ss_pred EEEeeCCCCceeeeeeechHHHHHHHHhcCCeecCCCCCC-ccccccCCHHHHHHHhhhhhccccccccccCCCCccC-C
Confidence 9999999999999999999999999999999998765433 2346789999999999999999999999999999765 5
Q ss_pred CCcCHHHHHHHHHhcccc
Q 026956 211 AYLGPAALLHANSIGLSN 228 (230)
Q Consensus 211 ~FlGPaal~~a~R~~~~~ 228 (230)
+|+||.+++++||+..|.
T Consensus 158 ~~~gp~~~~~~~r~~~d~ 175 (220)
T TIGR00384 158 EFLGPAALTAAYRFLIDS 175 (220)
T ss_pred CCcCHHHHHHHHHHhcCC
Confidence 799999999999998774
No 14
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=100.00 E-value=9.6e-42 Score=270.40 Aligned_cols=105 Identities=50% Similarity=0.888 Sum_probs=91.1
Q ss_pred EEEEEeeCCCCCC-CCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeeccccccccCC
Q 026956 49 KFQIYRWNPDSPS-KPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPS 127 (230)
Q Consensus 49 ~lkI~Rfdp~~d~-~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~~~ 127 (230)
||+|+||||+.+. ++||++|+|++++ ++||||+|.+|++++||+|+||+|||+|+||+|+|+|||+++|||.|++.+.
T Consensus 1 t~~I~R~~~~~~~~~~~~~~y~v~~~~-~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC~t~v~~~ 79 (110)
T PF13085_consen 1 TLRIFRFDPESDEGEPYYQEYEVPVEP-GMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLACKTQVDDL 79 (110)
T ss_dssp EEEEEE--TTSTTSS-EEEEEEEEGGS-TSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGGGSBGGGC
T ss_pred CEEEEEcCCCCCCCCCeEEEEEecCCC-CCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecceeeEchhc
Confidence 6999999997755 8999999999997 9999999999999999999999999999999999999999999999999864
Q ss_pred C----CceEEeeCCCCcceeeeeechhhHHH
Q 026956 128 G----SASTITPLPHMFVIKDLVVDMTNFYN 154 (230)
Q Consensus 128 ~----~~itIEPL~~~pvirDLvVD~~~f~~ 154 (230)
. +.|+||||++|||||||+||++.||+
T Consensus 80 ~~~~~~~i~IePL~~fpVirDLvVD~~~f~e 110 (110)
T PF13085_consen 80 IEKFGNVITIEPLPNFPVIRDLVVDMSPFFE 110 (110)
T ss_dssp TTSETBEEEEEESTTSBEEETTEEETHHHHH
T ss_pred cCCCcceEEEEECCCCCcceeCceeChHHcC
Confidence 3 36999999999999999999999996
No 15
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=7.3e-39 Score=305.08 Aligned_cols=167 Identities=35% Similarity=0.675 Sum_probs=156.7
Q ss_pred ceEEEEEEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecccccccc
Q 026956 46 DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS 125 (230)
Q Consensus 46 ~~v~lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~ 125 (230)
+++||+||||||+.+ .|||++|+|++++ ++||||+|++++.+++|+|.|+++|+.|+||+|+|.|||+++|||++.+.
T Consensus 2 ~~~~~~i~r~~~~~~-~~~~~~~~v~~~~-~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~~ 79 (486)
T PRK06259 2 KMITITVKRFDPEKD-EPHFESYEVPVKE-GMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTINGEPVLACKTEVE 79 (486)
T ss_pred ceEEEEEEecCCCCC-CceeEEEEEeCCC-CChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEECCeEecccccCCC
Confidence 378999999999998 8999999999987 99999999999977899999999999999999999999999999999998
Q ss_pred CCCCceEEeeCCCCcceeeeeechhhHHHHhhhcccccccCCCCCCCCCCCCCCHHHHHHHhcHHHhhhhchhhhcccCc
Q 026956 126 PSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSY 205 (230)
Q Consensus 126 ~~~~~itIEPL~~~pvirDLvVD~~~f~~k~k~vkp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~CI~CG~C~saCP~~ 205 (230)
++ ++|||+. +|+++|||+|++.|+++++++++|+.++. +.+|+|++++++..+..||.||.|.++||++
T Consensus 80 ~~---~~i~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~ 148 (486)
T PRK06259 80 DG---MIIEPLD-FPVIKDLIVDREPYYKKLKSLRNYLQRKN-------EKITYPEDIEDIKKLRGCIECLSCVSTCPAR 148 (486)
T ss_pred CC---CEEEecC-CcchhccccccHHHHHHHHhhcCCCCCCc-------cCCCCHHHHHHHhCchhcccCccccccCCCC
Confidence 75 9999999 99999999999999999999999998653 3578999999999999999999999999999
Q ss_pred ccCCCCCcCHHHHHHHHHhccc
Q 026956 206 WWTSEAYLGPAALLHANSIGLS 227 (230)
Q Consensus 206 ~~~~~~FlGPaal~~a~R~~~~ 227 (230)
.. ++|+||.++.+++|+.+|
T Consensus 149 ~~--~~~~gp~~~~~~~~~~~~ 168 (486)
T PRK06259 149 KV--SDYPGPTFMRQLARFAFD 168 (486)
T ss_pred cc--ccCcCHHHHHHHHHHhhC
Confidence 75 579999999999999876
No 16
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=99.57 E-value=1.4e-15 Score=126.45 Aligned_cols=68 Identities=24% Similarity=0.419 Sum_probs=59.0
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecccccccc--CCCCceEEeeCCC
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH 138 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~--~~~~~itIEPL~~ 138 (230)
+.+++++++ +++|||+||+-. ++ .++|.||++|.||+|+|+|||++++||.+++. +|.+++|||+|..
T Consensus 9 ~~~~~~~~~-~~~Ll~~LR~~l-gl---tg~K~gC~~G~CGACtVlvdg~~v~SCl~~~~~~~G~~V~TiEgl~~ 78 (148)
T TIGR03193 9 RWREDAVAD-NMLLVDYLRDTV-GL---TGTKQGCDGGECGACTVLVDGRPRLACSTLAHRVAGRKVETVEGLAT 78 (148)
T ss_pred EEEEeecCC-CCcHHHHHHHhc-CC---CCCCCCCCCCCCCCCEEEECCeEeeccHhhHhhcCCCcEEEeCCCCC
Confidence 345677777 899999999854 44 47999999999999999999999999999997 5778999999975
No 17
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=99.52 E-value=1e-14 Score=127.89 Aligned_cols=84 Identities=24% Similarity=0.402 Sum_probs=66.9
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecccccccc--CCCCceEEeeCCCC---c
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPHM---F 140 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~--~~~~~itIEPL~~~---p 140 (230)
+.+++++++ ++||||+||+-. ++. +.+.||++|.||+|+|+|||++++||.+++. +|.+++|||+|... .
T Consensus 59 ~~~~~~v~~-~~tLLd~LR~~l-~lt---GtK~GC~~G~CGACTVlVdG~~v~SCl~la~~~~G~~ItTiEGL~~~~~lh 133 (217)
T PRK11433 59 KTEQLEVDT-RTTLLDALREHL-HLT---GTKKGCDHGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLGSPDNLH 133 (217)
T ss_pred EEEEEecCC-CCcHHHHHHHhc-CCC---CCCCCCCCCCcCceEEEECCEEeeeeeeehhhcCCCEEEEeCCcCCCCCCC
Confidence 456777777 899999999854 333 7899999999999999999999999999994 67789999999753 3
Q ss_pred ceeeeeechhhHHH
Q 026956 141 VIKDLVVDMTNFYN 154 (230)
Q Consensus 141 virDLvVD~~~f~~ 154 (230)
.++..+++...|..
T Consensus 134 pvQ~Af~~~~a~QC 147 (217)
T PRK11433 134 PMQAAFVKHDGFQC 147 (217)
T ss_pred HHHHHHHHcCCCcC
Confidence 45555555555444
No 18
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=99.51 E-value=1.1e-14 Score=122.51 Aligned_cols=67 Identities=19% Similarity=0.390 Sum_probs=58.8
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecccccccc--CCCCceEEeeCCC
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH 138 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~--~~~~~itIEPL~~ 138 (230)
+.+++++++ +++|||+||+. ++. +.|.||++|.||+|+|+|||+++.||.+++. +|.+++|||+|..
T Consensus 16 ~~~~~~~~~-~~~Ll~~LR~~--glt---gtK~GC~~G~CGACtVlvdg~~v~SCl~~a~~~~G~~V~TiEGl~~ 84 (159)
T PRK09908 16 MPFQLHAAP-GTPLSELLREQ--GLL---SVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAK 84 (159)
T ss_pred EEEEEecCC-CCcHHHHHHHc--CCC---CCCCCcCCCCCCCcEEEECCcEeehhHhhHHHhCCCEEEeecCCCC
Confidence 456777777 89999999973 455 7999999999999999999999999999997 5778999999975
No 19
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=99.49 E-value=1.1e-14 Score=121.81 Aligned_cols=86 Identities=22% Similarity=0.432 Sum_probs=69.2
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecccccccc--CCCCceEEeeCCCC----
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPHM---- 139 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~--~~~~~itIEPL~~~---- 139 (230)
+.++++++| +++|||+||+-. ++. +.+.||++|.||+|+|.|||+++.||.+++. +|.++.|||+|.+.
T Consensus 11 ~~~~~~~~p-~~~Ll~~LRd~l-~lt---gtk~GC~~g~CGACtVlvDG~~v~SCl~~a~~~~G~~ItTiEGl~~~~~~l 85 (156)
T COG2080 11 EPVELDVDP-RTPLLDVLRDEL-GLT---GTKKGCGHGQCGACTVLVDGEAVNSCLTLAVQAEGAEITTIEGLAKKDGGL 85 (156)
T ss_pred eEEEEEeCC-CChHHHHHHHhc-CCC---CcCCCCCCccCCceEEEECCeEehHHHHHHHHhCCCeEEEeecccCCCCCc
Confidence 567888888 999999999765 444 6999999999999999999999999999997 67889999999843
Q ss_pred cceeeeeechhhHHHHh
Q 026956 140 FVIKDLVVDMTNFYNQY 156 (230)
Q Consensus 140 pvirDLvVD~~~f~~k~ 156 (230)
..++..+++.+.|+..|
T Consensus 86 ~~vQ~Af~e~~~~QCGy 102 (156)
T COG2080 86 HPVQQAFLEHDAFQCGY 102 (156)
T ss_pred CHHHHHHHHcCCCcCCC
Confidence 33444555555555443
No 20
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=99.42 E-value=6.1e-14 Score=117.05 Aligned_cols=68 Identities=28% Similarity=0.422 Sum_probs=58.8
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecccccccc--CCCCceEEeeCCC
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH 138 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~--~~~~~itIEPL~~ 138 (230)
+.+++++++ +++|+++||+.. ++. +.+.||++|.||+|+|+|||+++.||.+++. +|.+++|||+|..
T Consensus 11 ~~~~~~~~~-~~~Ll~~LR~~~-~lt---gtK~gC~~G~CGACtVlvdG~~v~SCl~~~~~~~G~~v~TiEgl~~ 80 (151)
T TIGR03198 11 QAWEVAAVP-TTRLSDLLRKEL-QLT---GTKVSCGIGRCGACSVLIDGKLANACLTMAYQADGHEITTIEGIAE 80 (151)
T ss_pred EEEEeecCC-CcHHHHHHHhcc-CCC---CCCCCCCCCcCCccEEEECCcEEechHHHHHHhcCCEEEecCCcCC
Confidence 456677776 899999999854 344 7999999999999999999999999999996 5788999999963
No 21
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=99.13 E-value=1.7e-11 Score=126.69 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=65.7
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccC-cCCCccCcceEEeCCeeecccccccc--CCCCceEEeeCCCC---
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRS-CREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPHM--- 139 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~g-Cr~GiCGsCaV~ING~~~LAC~t~v~--~~~~~itIEPL~~~--- 139 (230)
+.+++++++ +++|||+||+ . ++. +.|.| |.+|.||+|+|+|||+++.||.+++. +|.+++|||+|...
T Consensus 10 ~~~~~~~~~-~~~l~~~LR~-~-~~~---~~k~g~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~ 83 (956)
T PRK09800 10 APQELTVNP-GENVQKLLFN-M-GMH---SVRNSDDGFGFAGSDAIIFNGNIVNASLLIAAQLEKADIRTAESLGKWNEL 83 (956)
T ss_pred EEEEEecCC-CCCHHHHHHH-C-CCC---ccccCCCCcccCCCCEEEECCeEEeHHHHHHHHcCCCEEEecCCcCCCCCC
Confidence 456777777 8999999999 4 455 68997 89999999999999999999999997 57789999999743
Q ss_pred cceeeeeechhhHHH
Q 026956 140 FVIKDLVVDMTNFYN 154 (230)
Q Consensus 140 pvirDLvVD~~~f~~ 154 (230)
..++..++|...++.
T Consensus 84 ~~~q~af~~~~~~QC 98 (956)
T PRK09800 84 SLVQQAMVDVGVVQS 98 (956)
T ss_pred CHHHHHHHHcCCCcC
Confidence 334444555555444
No 22
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=99.13 E-value=1.8e-11 Score=126.44 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=67.0
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCccccc-CcCCCccCcceEEeCCeeecccccccc--CCCCceEEeeCCC---C
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRR-SCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH---M 139 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~-gCr~GiCGsCaV~ING~~~LAC~t~v~--~~~~~itIEPL~~---~ 139 (230)
+.+++++++ +++||++||+. ++. +.+. +|.+|.||+|+|+|||+++.||.+++. +|.++.|||+|.. +
T Consensus 6 ~~~~~~~~~-~~~l~~~LR~~--~l~---~~k~~~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tiegl~~~~~~ 79 (951)
T TIGR03313 6 APQTLECKL-GENVQTLLFNM--GMH---SVRNSDDGFGFAGSDAILFNGVLKNASLLIAAQLEGAEVRTAESLGQWNQL 79 (951)
T ss_pred EEEEEecCC-CCCHHHHHHHC--CCC---CCcCCCCCcccCCCCEEEECCeEeeHHHHHHHHcCCCEEEecCcCCCCCCC
Confidence 456777777 89999999994 444 6888 799999999999999999999999997 5788999999974 3
Q ss_pred cceeeeeechhhHHHH
Q 026956 140 FVIKDLVVDMTNFYNQ 155 (230)
Q Consensus 140 pvirDLvVD~~~f~~k 155 (230)
..++..++|...+...
T Consensus 80 ~~~q~af~~~~a~QCG 95 (951)
T TIGR03313 80 SLVQQAMVDVGVVQSG 95 (951)
T ss_pred CHHHHHHHHcCCCcCC
Confidence 4455555566655553
No 23
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=99.13 E-value=2.3e-11 Score=117.20 Aligned_cols=68 Identities=22% Similarity=0.460 Sum_probs=59.0
Q ss_pred EEEEE-eecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEe----CC-----eeecccccccc--CCCCceEE
Q 026956 66 KEFEI-NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI----DG-----CNGLACLTKIS--PSGSASTI 133 (230)
Q Consensus 66 ~~y~v-~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~I----NG-----~~~LAC~t~v~--~~~~~itI 133 (230)
+.+++ ++++ ++||||+||+-. ++. +.|.||++|.||+|+|+| || +++.||.+++. +|.+++||
T Consensus 8 ~~~~~~~~~~-~~~ll~~lR~~~-~l~---g~k~gC~~G~CGaCtv~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 82 (467)
T TIGR02963 8 ETVTLSDVDP-TRTLLDYLREDA-GLT---GTKEGCAEGDCGACTVVVGELVDGGKLRYRSVNACIQFLPSLDGKAVVTV 82 (467)
T ss_pred EEEEeecCCC-CCCHHHHHHHhc-CCC---CCCcccCCCCCCceEEEEEecCCCCcccceEEehhhhhHHhcCCCEEEec
Confidence 45667 5777 899999999854 455 799999999999999999 99 99999999997 57789999
Q ss_pred eeCCC
Q 026956 134 TPLPH 138 (230)
Q Consensus 134 EPL~~ 138 (230)
|+|.+
T Consensus 83 Egl~~ 87 (467)
T TIGR02963 83 EDLRQ 87 (467)
T ss_pred CCCCC
Confidence 99974
No 24
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=99.12 E-value=3.1e-11 Score=122.99 Aligned_cols=56 Identities=21% Similarity=0.416 Sum_probs=49.9
Q ss_pred EeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEeCCeeeccccccccCC
Q 026956 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDGCNGLACLTKISPS 127 (230)
Q Consensus 70 v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~ING~~~LAC~t~v~~~ 127 (230)
|++.+ |+|||++++..+ -..|+|+|+.+|. .|.|+.|.|.|||++++||.|++.+|
T Consensus 11 v~~~~-G~til~aa~~~g-i~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~dG 67 (819)
T PRK08493 11 CEAQE-GEYILNVARRNG-IFIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKAKEG 67 (819)
T ss_pred EEeCC-CCHHHHHHHHcC-CccccccccCCCCCCccccceEEEECCEEeccccCCCCCC
Confidence 34446 899999999986 5689999999998 69999999999999999999999986
No 25
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=99.09 E-value=3.9e-11 Score=122.72 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=63.2
Q ss_pred EEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecccccccc--CCCCceEEeeCCCC--cceee
Q 026956 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPHM--FVIKD 144 (230)
Q Consensus 69 ~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~--~~~~~itIEPL~~~--pvirD 144 (230)
++++++ +++||++||+-. ++. +.|.||.+|.||+|+|+|||+++.||.+++. +|.+++|||+|... ..++.
T Consensus 9 ~~~~~~-~~~l~~~lr~~~-~~~---~~k~gc~~g~cgactv~~dg~~~~sc~~~~~~~~g~~i~T~egl~~~~~~~~q~ 83 (848)
T TIGR03311 9 EVDVNE-EKKLLEFLREDL-RLT---GVKNGCGEGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEGLTEREKDVYAW 83 (848)
T ss_pred EeeCCC-CCcHHHHHHHhc-CCC---cCCCCCCCCCCCCcEEEECCeEEehhhhhHHhcCCCEEEecCCCCCCCCCHHHH
Confidence 355566 899999999854 344 7999999999999999999999999999997 57889999999752 23444
Q ss_pred eeechhhHHH
Q 026956 145 LVVDMTNFYN 154 (230)
Q Consensus 145 LvVD~~~f~~ 154 (230)
.++|...+..
T Consensus 84 a~~~~~~~qc 93 (848)
T TIGR03311 84 AFAKAGAVQC 93 (848)
T ss_pred HHHHcCCCcC
Confidence 4445444444
No 26
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=98.89 E-value=3.4e-10 Score=113.52 Aligned_cols=56 Identities=27% Similarity=0.449 Sum_probs=49.0
Q ss_pred EeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEeCCeeeccccccccCC
Q 026956 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDGCNGLACLTKISPS 127 (230)
Q Consensus 70 v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~ING~~~LAC~t~v~~~ 127 (230)
+++++ |+|||++|+... -..|.|.|..+-. .+.|-.|.|.|||+.+.||.|.+.+|
T Consensus 15 ~~v~~-G~tiL~a~~~~g-I~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dG 71 (978)
T COG3383 15 IEVEE-GTTILRAANRNG-IEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDG 71 (978)
T ss_pred EecCC-ChHHHHHHHhcC-CcccceeccCCCCcccccceEEEEecCceeccccccccCC
Confidence 34446 999999999976 5678999999877 79999999999999999999999986
No 27
>PLN00192 aldehyde oxidase
Probab=98.88 E-value=7.2e-10 Score=118.16 Aligned_cols=81 Identities=21% Similarity=0.411 Sum_probs=64.0
Q ss_pred EEEEE-eecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEe----------CCeeecccccccc--CCCCceE
Q 026956 66 KEFEI-NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI----------DGCNGLACLTKIS--PSGSAST 132 (230)
Q Consensus 66 ~~y~v-~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~I----------NG~~~LAC~t~v~--~~~~~it 132 (230)
+.+++ ++++ ++|||+.||+.. ++. +.|.||++|.||+|+|+| ||+++.||.+++. +|..++|
T Consensus 13 ~~~~~~~~~p-~~~Ll~~LR~~~-~lt---gtK~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T 87 (1344)
T PLN00192 13 ERFELSSVDP-STTLLEFLRTQT-PFK---SVKLGCGEGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVNGCSITT 87 (1344)
T ss_pred EEEEeccCCC-CCcHHHHHHHhh-CCC---CcCCCCCCCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhCCCEEEe
Confidence 45667 4677 899999999854 455 799999999999999999 7999999999997 5778999
Q ss_pred EeeCCC----Ccceeeeeechhh
Q 026956 133 ITPLPH----MFVIKDLVVDMTN 151 (230)
Q Consensus 133 IEPL~~----~pvirDLvVD~~~ 151 (230)
||+|.+ +..++.-++|...
T Consensus 88 vEgl~~~~~~lhpvq~a~~~~~~ 110 (1344)
T PLN00192 88 SEGLGNSKDGFHPIHKRFAGFHA 110 (1344)
T ss_pred ecCcCCCCCCCCHHHHHHHHcCC
Confidence 999974 2334444444444
No 28
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.85 E-value=1.1e-09 Score=96.41 Aligned_cols=56 Identities=27% Similarity=0.475 Sum_probs=42.1
Q ss_pred EeecCCChhHHHHHHHhhhccCCCcccccC-cCCCccCcceEEeCCee--eccccccccCC
Q 026956 70 INLKECGPMVLDALIKIKSEIDPSLTFRRS-CREGICGSCAMNIDGCN--GLACLTKISPS 127 (230)
Q Consensus 70 v~v~~~~~TvLdaL~~i~~~~d~~l~fr~g-Cr~GiCGsCaV~ING~~--~LAC~t~v~~~ 127 (230)
+++.+ |.|||++++..+ ...|++.+..+ |..|.||.|.|.|||+. +.||.|++.+|
T Consensus 13 ~~~~~-g~til~a~~~~g-i~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~G 71 (234)
T PRK07569 13 VSARE-GETLLEAAREAG-IPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEG 71 (234)
T ss_pred EEeCC-CCHHHHHHHHcC-CCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCC
Confidence 34446 899999999876 33444444332 44999999999999964 57999999986
No 29
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=98.84 E-value=1e-09 Score=116.95 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=62.7
Q ss_pred EeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeC----------Ceeecccccccc--CCCCceEEeeCC
Q 026956 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID----------GCNGLACLTKIS--PSGSASTITPLP 137 (230)
Q Consensus 70 v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~IN----------G~~~LAC~t~v~--~~~~~itIEPL~ 137 (230)
+++++ ++||||+||+-. ++. +.|.||.+|.||+|+|+|| |+++.||.+++. +|.+++|||+|.
T Consensus 15 ~~~~~-~~~ll~~LR~~~-~l~---gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~v~TvEgl~ 89 (1330)
T TIGR02969 15 KNVDP-ETMLLPYLRKKL-RLT---GTKYGCGGGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYGAAVTTVEGIG 89 (1330)
T ss_pred ccCCC-CCcHHHHHHhhc-CCC---CCCCCcCCCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCCCEEEecCCcC
Confidence 45666 899999999854 445 7999999999999999998 699999999997 578899999997
Q ss_pred C----CcceeeeeechhhHHH
Q 026956 138 H----MFVIKDLVVDMTNFYN 154 (230)
Q Consensus 138 ~----~pvirDLvVD~~~f~~ 154 (230)
+ +..++..++|...+..
T Consensus 90 ~~~~~l~pvq~a~~~~~~~QC 110 (1330)
T TIGR02969 90 STRTRLHPVQERIAKCHGTQC 110 (1330)
T ss_pred CCCCCCCHHHHHHHHcCCCcC
Confidence 4 2334444555554333
No 30
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=98.82 E-value=2.1e-09 Score=98.24 Aligned_cols=59 Identities=22% Similarity=0.387 Sum_probs=49.8
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEeCCe--eeccccccccCC
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDGC--NGLACLTKISPS 127 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~ING~--~~LAC~t~v~~~ 127 (230)
++++|. ++ ++|||++.+..+ -..|+|.|..+.. .|.|+.|.|.|+|+ .+.||.|++.+|
T Consensus 76 k~VeV~-~~-G~TILeAAr~~G-I~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eG 137 (297)
T PTZ00305 76 RPVEII-PQ-EENLLEVLEREG-IRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPG 137 (297)
T ss_pred EEEEec-CC-CChHHHHHHHcC-CCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCC
Confidence 344441 35 899999999987 6789999999887 89999999999996 678999999986
No 31
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.72 E-value=6.9e-09 Score=104.23 Aligned_cols=57 Identities=25% Similarity=0.444 Sum_probs=50.9
Q ss_pred EEeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEeCC--eeeccccccccCC
Q 026956 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG--CNGLACLTKISPS 127 (230)
Q Consensus 69 ~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~ING--~~~LAC~t~v~~~ 127 (230)
++++++ +.|||+|.+..+ -..|.|+|+..|. .|-|..|.|.|+| |++-||.|++.+|
T Consensus 10 ei~v~~-g~tvLqAa~~aG-i~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dG 69 (693)
T COG1034 10 EIEVPE-GETVLQAAREAG-IDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDG 69 (693)
T ss_pred EEecCC-CcHHHHHHHHcC-CCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCC
Confidence 345556 899999999998 6789999999999 7999999999999 9999999999875
No 32
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=98.69 E-value=2.5e-08 Score=72.96 Aligned_cols=57 Identities=33% Similarity=0.660 Sum_probs=45.2
Q ss_pred EEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeC------------------CeeeccccccccCCCC
Q 026956 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID------------------GCNGLACLTKISPSGS 129 (230)
Q Consensus 68 y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~IN------------------G~~~LAC~t~v~~~~~ 129 (230)
.++++++ +.|||++|+..+ +.++++|+.|.||+|.|+|+ +..+|||++.+..+
T Consensus 10 ~~~~~~~-g~~ll~al~~~g------~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~~-- 80 (84)
T cd00207 10 VEVEVPE-GETLLDAAREAG------IDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDG-- 80 (84)
T ss_pred EEEEECC-CCcHHHHHHHcC------CCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCCC--
Confidence 4456666 899999999954 34789999999999999996 56889999998532
Q ss_pred ceEEe
Q 026956 130 ASTIT 134 (230)
Q Consensus 130 ~itIE 134 (230)
++|+
T Consensus 81 -i~v~ 84 (84)
T cd00207 81 -LVIE 84 (84)
T ss_pred -cEEC
Confidence 5553
No 33
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.65 E-value=1.8e-08 Score=102.63 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=47.7
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEeCCee--eccccccccCC
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDGCN--GLACLTKISPS 127 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~ING~~--~LAC~t~v~~~ 127 (230)
+++++ .+ |+|||++++... ...|+|.|..... .|.|+-|.|.|||.+ +.||.|++.+|
T Consensus 12 ~~~~~--~~-g~til~aa~~~g-i~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~g 72 (797)
T PRK07860 12 VEVSV--PK-GTLVIRAAELLG-IQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDG 72 (797)
T ss_pred EEEEe--CC-CChHHHHHHHcC-CCCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCC
Confidence 44555 46 899999999986 5678899887644 899999999999975 56999999986
No 34
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.64 E-value=1.1e-08 Score=100.70 Aligned_cols=57 Identities=19% Similarity=0.422 Sum_probs=47.5
Q ss_pred EEeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEeCCe---eeccccccccCC
Q 026956 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDGC---NGLACLTKISPS 127 (230)
Q Consensus 69 ~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~ING~---~~LAC~t~v~~~ 127 (230)
+|++.+ ++|||++++..+ -..|+|.++.... .|.|..|.|.|+|+ .+.||.|++.+|
T Consensus 7 ~~~~~~-g~~il~a~~~~g-i~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~g 67 (603)
T TIGR01973 7 ELEVPK-GTTVLQACLSAG-IEIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDG 67 (603)
T ss_pred EEEeCC-CCHHHHHHHHcC-CCccccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCC
Confidence 445556 899999999976 4567888877665 79999999999996 689999999986
No 35
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.60 E-value=7.8e-08 Score=72.26 Aligned_cols=62 Identities=27% Similarity=0.489 Sum_probs=42.6
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccc-----cCcCCCccCcceEEeCCee-eccccccccCCCCceEEe
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFR-----RSCREGICGSCAMNIDGCN-GLACLTKISPSGSASTIT 134 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr-----~gCr~GiCGsCaV~ING~~-~LAC~t~v~~~~~~itIE 134 (230)
++|+++ + |.|||+||...+ -..|.+.+. .-|..|.|+.|.|.|||++ +.||.|++.+| |.|+
T Consensus 11 ~~v~~~--~-G~til~al~~~g-i~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~G---M~V~ 78 (82)
T PF13510_consen 11 KPVEVP--P-GETILEALLAAG-IDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDG---MVVE 78 (82)
T ss_dssp EEEEEE--E-T-BHHHHHHHTT---B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TT---EEEE
T ss_pred EEEEEc--C-CCHHHHHHHHCC-CeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCC---cEEE
Confidence 456565 5 889999999987 445566664 3488999999999999999 99999999987 5554
No 36
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.59 E-value=1.9e-08 Score=101.67 Aligned_cols=58 Identities=24% Similarity=0.448 Sum_probs=47.6
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEeCCee--eccccccccCC
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDGCN--GLACLTKISPS 127 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~ING~~--~LAC~t~v~~~ 127 (230)
+++++ .+ |+|||++++..+ -..|+|.+..+-. .|.|..|.|.|||.+ +.||.|++.+|
T Consensus 9 ~~~~~--~~-g~~il~a~~~~g-~~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~~g 69 (776)
T PRK09129 9 KKVEV--PE-GSMVIEAADKAG-IYIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVTDG 69 (776)
T ss_pred EEEEe--CC-CCHHHHHHHHcC-CCCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCCCC
Confidence 44555 45 899999999987 5578888877655 789999999999965 67999999986
No 37
>PLN02906 xanthine dehydrogenase
Probab=98.54 E-value=2e-08 Score=107.15 Aligned_cols=57 Identities=23% Similarity=0.438 Sum_probs=50.8
Q ss_pred hhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeC------C----eeecccccccc--CCCCceEEeeCCC
Q 026956 77 PMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID------G----CNGLACLTKIS--PSGSASTITPLPH 138 (230)
Q Consensus 77 ~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~IN------G----~~~LAC~t~v~--~~~~~itIEPL~~ 138 (230)
+|||+.||+ . ++. +.|.||.+|.||+|+|+|| | +++.||.+++. +|..++|||+|.+
T Consensus 2 ~~ll~~LR~-~-~l~---g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~ 70 (1319)
T PLN02906 2 QTLLEYLRD-L-GLT---GTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGN 70 (1319)
T ss_pred CcHHHHHHh-C-CCC---CCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCC
Confidence 689999998 4 555 7999999999999999999 5 79999999997 5778999999974
No 38
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.50 E-value=4.3e-08 Score=98.56 Aligned_cols=56 Identities=18% Similarity=0.376 Sum_probs=48.4
Q ss_pred EeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEeCCe---eeccccccccCC
Q 026956 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDGC---NGLACLTKISPS 127 (230)
Q Consensus 70 v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~ING~---~~LAC~t~v~~~ 127 (230)
|++++ |+|||+|.+..+ -..|+|.|+..-. .|.|+.|.|.|+|. ++.||.|++.+|
T Consensus 11 v~v~~-g~til~a~~~~g-i~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~g 70 (687)
T PRK09130 11 IEVPD-GYTLLQACEAAG-AEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEG 70 (687)
T ss_pred EEeCC-CCHHHHHHHHcC-CCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCC
Confidence 44556 999999999987 6689999998776 79999999999986 788999999986
No 39
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=98.47 E-value=3.8e-07 Score=66.38 Aligned_cols=42 Identities=29% Similarity=0.574 Sum_probs=33.3
Q ss_pred EEEEEeecCCChh-HHHHHHHhhhccCCCcccccCcCCCccCcceEEeC
Q 026956 66 KEFEINLKECGPM-VLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID 113 (230)
Q Consensus 66 ~~y~v~v~~~~~T-vLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~IN 113 (230)
+.+++++.+ +.| ||++|++.. + +...++|+.|.||+|.|+|.
T Consensus 6 ~~~~~~~~~-~~~~ll~~~~~~~-g----i~i~~~C~~g~Cg~C~v~v~ 48 (78)
T PF00111_consen 6 KGVTVEVPP-GETLLLDALERAG-G----IGIPYSCGGGGCGTCRVRVL 48 (78)
T ss_dssp EEEEEEEET-TSBBHHHHHHHTT-T----TTSTTSSSSSSSSTTEEEEE
T ss_pred eEEEEEeCC-CccHHHHHHHHcC-C----CCcccCCCCCccCCcEEEEe
Confidence 356667666 777 999999862 1 46889999999999999865
No 40
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.29 E-value=2.6e-07 Score=94.53 Aligned_cols=56 Identities=20% Similarity=0.354 Sum_probs=41.3
Q ss_pred EeecCCChhHHHHHHHhhhccCCCcccccCcC------CCccCcceEEe-----CC--eeeccccccccCCCCceEEee
Q 026956 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCR------EGICGSCAMNI-----DG--CNGLACLTKISPSGSASTITP 135 (230)
Q Consensus 70 v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr------~GiCGsCaV~I-----NG--~~~LAC~t~v~~~~~~itIEP 135 (230)
+++.+ ++|||++++..+ -. .-+.|. .|.|+.|.|.| +| +.++||.|.+.++ |.|+.
T Consensus 11 ~~~~~-g~til~a~~~~g-i~-----ip~~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~~aC~~~v~~g---m~v~t 79 (847)
T PRK08166 11 YEVNG-ADNLLEACLSLG-ID-----IPYFCWHPALGSVGACRQCAVKQYQNPEDTRGRLVMSCMTPATDG---TFISI 79 (847)
T ss_pred EEeCC-CCHHHHHHHHcC-CC-----CCccccCCCCCCCCccCCCeEEEeecCccCCCCcccCcCCCCCCC---CEEEe
Confidence 33345 899999999876 22 335566 69999999998 23 5789999999875 44443
No 41
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.27 E-value=2e-06 Score=85.83 Aligned_cols=62 Identities=27% Similarity=0.395 Sum_probs=48.3
Q ss_pred EEEEeecCCChhHHHHHHHhhhccCCCccccc-CcCCCccCcceEEeCCee--eccccccccCCCCceEEee
Q 026956 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRR-SCREGICGSCAMNIDGCN--GLACLTKISPSGSASTITP 135 (230)
Q Consensus 67 ~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~-gCr~GiCGsCaV~ING~~--~LAC~t~v~~~~~~itIEP 135 (230)
+|++ .+ ++|||++|+..+ ...|++.+.. -|..|.|+.|.|.|||.+ ++||.|.+.+| |.|+-
T Consensus 12 ~~~~--~~-g~ti~~a~~~~g-~~ip~~c~~~~~~~~g~C~~C~V~v~g~~~~~~aC~t~~~~G---m~v~t 76 (652)
T PRK12814 12 SVTA--AP-GTSILEAAASAG-ITIPTLCFHQELEATGSCWMCIVEIKGKNRFVPACSTAVSEG---MVIET 76 (652)
T ss_pred EEEe--CC-cCcHHHHHHHcC-CccccccCCCCCCCccccceeEEEECCCcceecCcCCCCCCC---CEEEe
Confidence 4444 45 899999999986 4566666653 366899999999999965 78999999986 55554
No 42
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=98.22 E-value=2.8e-06 Score=65.42 Aligned_cols=59 Identities=27% Similarity=0.522 Sum_probs=43.2
Q ss_pred EEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEe-CCe-----------------eeccccccccCCCCc
Q 026956 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGSA 130 (230)
Q Consensus 69 ~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~I-NG~-----------------~~LAC~t~v~~~~~~ 130 (230)
.+++.+ +.||||+|...+ +...++|+.|.||+|.++| +|. .+|+|.+.+.. .
T Consensus 16 ~~~~~~-g~tLLda~~~~G------i~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~~~~---d 85 (97)
T TIGR02008 16 TIECPD-DQYILDAAEEAG------IDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAYPTS---D 85 (97)
T ss_pred EEEECC-CCcHHHHHHHcC------CCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCEECC---C
Confidence 344446 889999999875 4578899999999999975 442 35888876653 3
Q ss_pred eEEeeCC
Q 026956 131 STITPLP 137 (230)
Q Consensus 131 itIEPL~ 137 (230)
++|+...
T Consensus 86 i~v~~~~ 92 (97)
T TIGR02008 86 CTIETHK 92 (97)
T ss_pred eEEEecc
Confidence 6777654
No 43
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=98.19 E-value=3e-06 Score=63.71 Aligned_cols=34 Identities=38% Similarity=0.761 Sum_probs=29.2
Q ss_pred ChhHHHHHHHhhhccCCCcccccCcCCCccCcceEE-eCCe
Q 026956 76 GPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMN-IDGC 115 (230)
Q Consensus 76 ~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~-ING~ 115 (230)
+.||||+|+..+ +...++||.|.||+|.++ +.|.
T Consensus 19 ~~tlL~a~~~~g------i~~p~~Cr~G~Cg~C~~~~~sG~ 53 (84)
T PRK10713 19 HPSLLAALESHN------VAVEYQCREGYCGSCRTRLVAGQ 53 (84)
T ss_pred CCcHHHHHHHcC------CCCCCCCCCeECCCCEeEEEeCe
Confidence 489999999975 568899999999999997 4664
No 44
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=98.14 E-value=7.4e-06 Score=64.57 Aligned_cols=72 Identities=15% Similarity=0.351 Sum_probs=48.7
Q ss_pred EEEEEEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEe-CCe----------
Q 026956 48 KKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNI-DGC---------- 115 (230)
Q Consensus 48 v~lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~I-NG~---------- 115 (230)
+.+...+|+|.. ..+++.+ +.|||++|+..+ +.+.++|+ .|.||+|.|.| +|.
T Consensus 4 ~~~~~~~~~p~~--------~~~~~~~-g~tLL~a~~~~g------i~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e 68 (110)
T TIGR02007 4 VFLPHEDLCPEG--------AVVEAKP-GETILDVALDNG------IEIEHACEKSCACTTCHCIVREGFDSLEEASEQE 68 (110)
T ss_pred EEEeCcccCCCC--------eEEEECC-CChHHHHHHHcC------CCccccCCCCceeCCCEEEEeeccccCCCCCHHH
Confidence 444555566542 3345556 899999999875 34678999 69999999987 441
Q ss_pred -------------eeccccccccCCCCceEEeeC
Q 026956 116 -------------NGLACLTKISPSGSASTITPL 136 (230)
Q Consensus 116 -------------~~LAC~t~v~~~~~~itIEPL 136 (230)
.+|||++.+.. +.++|+-.
T Consensus 69 ~~~L~~~~~~~~~~RLaCq~~~~~--~dl~v~~~ 100 (110)
T TIGR02007 69 EDMLDKAWGLEPDSRLSCQAVVAD--EDLVVEIP 100 (110)
T ss_pred HHHHhhccCCCCCcEEeeeEEEcC--CCEEEEEC
Confidence 46888887752 23666653
No 45
>CHL00134 petF ferredoxin; Validated
Probab=98.13 E-value=5e-06 Score=64.44 Aligned_cols=59 Identities=27% Similarity=0.502 Sum_probs=43.2
Q ss_pred EEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEe-CCe-----------------eeccccccccCCCC
Q 026956 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGS 129 (230)
Q Consensus 68 y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~I-NG~-----------------~~LAC~t~v~~~~~ 129 (230)
+.+++.+ +.||||+|...+ +...++|+.|.||+|.++| .|. .+|+|.+.+..
T Consensus 17 ~~~~~~~-~~tLL~a~~~~G------i~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~~--- 86 (99)
T CHL00134 17 VTIDCPD-DVYILDAAEEQG------IDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTCVAYPTS--- 86 (99)
T ss_pred EEEEECC-CCcHHHHHHHcC------CCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEeeCEECC---
Confidence 4455556 889999999975 5688999999999999976 442 34777776652
Q ss_pred ceEEeeC
Q 026956 130 ASTITPL 136 (230)
Q Consensus 130 ~itIEPL 136 (230)
.++|+..
T Consensus 87 d~~i~~~ 93 (99)
T CHL00134 87 DCTILTH 93 (99)
T ss_pred CeEEEec
Confidence 3666643
No 46
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=98.05 E-value=1.2e-05 Score=73.76 Aligned_cols=40 Identities=28% Similarity=0.667 Sum_probs=31.7
Q ss_pred EeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEE-eCCee
Q 026956 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMN-IDGCN 116 (230)
Q Consensus 70 v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~-ING~~ 116 (230)
+++++ +.|||++|...+ +...++|+.|+||+|.++ +.|..
T Consensus 277 ~~~~~-~~slL~~~~~~g------i~~~~~C~~G~Cg~C~~~~~~G~v 317 (352)
T TIGR02160 277 SSLSR-DESVLDAALRAR------PDLPFACKGGVCGTCRAKVLEGKV 317 (352)
T ss_pred EecCC-CCcHHHHHHHcC------CCCcCCCCCccCCCCEEEEecccc
Confidence 34445 789999999875 457899999999999997 56644
No 47
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=98.02 E-value=3.7e-06 Score=79.72 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=57.5
Q ss_pred eecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeC----C-----eeecccccccc--CCCCceEEeeCCCC
Q 026956 71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID----G-----CNGLACLTKIS--PSGSASTITPLPHM 139 (230)
Q Consensus 71 ~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~IN----G-----~~~LAC~t~v~--~~~~~itIEPL~~~ 139 (230)
++.+ ..||||-||.-+ .+. +.+.||-+|.||+|+|+|. | +.|.||...+. +|..++|||.|++.
T Consensus 22 ~v~P-~~TlLd~LR~d~-~lt---GtKEGCAEGDCGACTVlVgrl~~g~~l~yeSVNACirfl~sL~G~hvvTvE~L~~~ 96 (493)
T COG4630 22 DVPP-TTTLLDYLRLDR-RLT---GTKEGCAEGDCGACTVLVGRLVDGGSLRYESVNACIRFLGSLDGTHVVTVEHLRGQ 96 (493)
T ss_pred cCCc-chHHHHHHHHhc-ccc---cccccccCCCcCceEEEEEeecCCCceeeeehhHHHHHHhhcCCceEEEehhhcCC
Confidence 3445 889999999765 455 6999999999999999753 3 57899999997 56789999999853
Q ss_pred cceeeeeechhhHHH
Q 026956 140 FVIKDLVVDMTNFYN 154 (230)
Q Consensus 140 pvirDLvVD~~~f~~ 154 (230)
. .+|..-+.++.+
T Consensus 97 ~--g~LHpVQqamvd 109 (493)
T COG4630 97 D--GTLHPVQQAMVD 109 (493)
T ss_pred C--CCcCHHHHHHHh
Confidence 2 234444444333
No 48
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=97.94 E-value=3.3e-05 Score=61.79 Aligned_cols=61 Identities=18% Similarity=0.378 Sum_probs=43.7
Q ss_pred EEEEeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEe-CC-------------------------eeecc
Q 026956 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNI-DG-------------------------CNGLA 119 (230)
Q Consensus 67 ~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~I-NG-------------------------~~~LA 119 (230)
..++++.. |.|||++++..+ +.+..+|+ .|.||+|.|.| ++ ..+||
T Consensus 12 ~~~v~~~~-G~tLl~a~~~~g------i~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~sRLa 84 (117)
T PLN02593 12 ERTVKAPV-GMSLLEAAHEND------IELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTETSRLG 84 (117)
T ss_pred EEEEEECC-CCcHHHHHHHcC------CCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCCeEec
Confidence 35566666 899999999975 23556899 59999999999 31 24599
Q ss_pred ccccccCCCCceEEe
Q 026956 120 CLTKISPSGSASTIT 134 (230)
Q Consensus 120 C~t~v~~~~~~itIE 134 (230)
|++.+.+.-+.++|+
T Consensus 85 CQ~~v~~~~~~~~v~ 99 (117)
T PLN02593 85 CQVIAKPELDGMRLA 99 (117)
T ss_pred ceeEeecCCCCEEEE
Confidence 999887432335554
No 49
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=97.92 E-value=1.3e-05 Score=83.90 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=55.3
Q ss_pred EEEEEe-ecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCC---------eeecccccccc--CCCCceEE
Q 026956 66 KEFEIN-LKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDG---------CNGLACLTKIS--PSGSASTI 133 (230)
Q Consensus 66 ~~y~v~-v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING---------~~~LAC~t~v~--~~~~~itI 133 (230)
+.|+++ +++ ++||+..||+-. .+. +.+.||++|-||+|+|+|-. ..+.||.|++- .+-.++|+
T Consensus 10 ~~~~~~~vdP-~~TL~~fLR~k~-~lt---gtKlgC~EGGCGaCtv~ls~~dp~~~~~~~avNsCLt~l~s~~g~~VtT~ 84 (1257)
T KOG0430|consen 10 KRVEVELLPP-DLTLNTFLREKL-GLT---GTKLGCGEGGCGACTVVLSKYDPELKVRHWAVNSCLTLLNSVHGLEVTTS 84 (1257)
T ss_pred EEeeEecCCc-chhHHHHHHHhc-CCc---ceeeccCCCCccceEEEEeccCCCceeEEeehhhhhhhcccccceEEEee
Confidence 344444 445 899999999865 555 69999999999999998876 47799999997 35679999
Q ss_pred eeCCC
Q 026956 134 TPLPH 138 (230)
Q Consensus 134 EPL~~ 138 (230)
|+|.+
T Consensus 85 EGlGn 89 (1257)
T KOG0430|consen 85 EGLGN 89 (1257)
T ss_pred ecccc
Confidence 99987
No 50
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=97.87 E-value=1.2e-05 Score=75.29 Aligned_cols=56 Identities=18% Similarity=0.404 Sum_probs=47.9
Q ss_pred CCCCCCCHHHHHHHhcHHHhhhhchhhhcccCcccCCCCCcCHHHHHHHHHhcccc
Q 026956 173 GKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANSIGLSN 228 (230)
Q Consensus 173 ~~e~~~~pe~~~~~~~~~~CI~CG~C~saCP~~~~~~~~FlGPaal~~a~R~~~~~ 228 (230)
..+..|++++.+..+.+..||.||.|..+||++...+..+.||...+..+|.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~ 61 (407)
T PRK11274 6 ADFIRDTPEGEEAEAILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEG 61 (407)
T ss_pred cccccCChhhhHhHHHHHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhcc
Confidence 34568889888888889999999999999999987767799999988888877665
No 51
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=97.83 E-value=3.9e-05 Score=70.16 Aligned_cols=42 Identities=33% Similarity=0.695 Sum_probs=32.7
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEe-CCee
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGCN 116 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~I-NG~~ 116 (230)
++++++ + +.|||++|+..+ +...++|+.|+||+|.++| .|..
T Consensus 258 ~~~~~~--~-~~~lL~~~~~~g------i~~~~~C~~G~Cg~C~~~~~~G~v 300 (332)
T PRK10684 258 REFYAP--V-GTTLLEALESNK------VPVVAACRAGVCGCCKTKVVSGEY 300 (332)
T ss_pred EEEEeC--C-CChHHHHHHHcC------CCccCCCCCcCCCCCEEEEecCcc
Confidence 455554 5 789999998875 4588999999999999974 5543
No 52
>PLN03136 Ferredoxin; Provisional
Probab=97.80 E-value=3.8e-05 Score=64.15 Aligned_cols=56 Identities=30% Similarity=0.536 Sum_probs=40.9
Q ss_pred EeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEe-CCe-----------------eeccccccccCCCCce
Q 026956 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGSAS 131 (230)
Q Consensus 70 v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~I-NG~-----------------~~LAC~t~v~~~~~~i 131 (230)
+++.+ +.+|||+++..+ +...++|+.|.||+|.++| .|. .+|+|...... .+
T Consensus 68 ~~~~~-g~tILdAa~~~G------i~lp~sCr~G~CGtC~~~l~~G~V~~~~~~~L~~~e~~~G~~LaC~a~p~s---D~ 137 (148)
T PLN03136 68 VECEE-DVYVLDAAEEAG------IDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTS---DV 137 (148)
T ss_pred EEeCC-CCcHHHHHHHcC------CCCCcCCCCccCCCCEEEEecCcCccCcccCCCHHHhcCCEEEEeEeEECC---Cc
Confidence 44445 789999999975 4578999999999999986 442 34777776653 25
Q ss_pred EEee
Q 026956 132 TITP 135 (230)
Q Consensus 132 tIEP 135 (230)
+|+-
T Consensus 138 ~Ie~ 141 (148)
T PLN03136 138 VIET 141 (148)
T ss_pred EEec
Confidence 6654
No 53
>PTZ00038 ferredoxin; Provisional
Probab=97.79 E-value=4.1e-05 Score=66.49 Aligned_cols=57 Identities=30% Similarity=0.504 Sum_probs=42.2
Q ss_pred EeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEe-CCe-----------------eeccccccccCCCCce
Q 026956 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGSAS 131 (230)
Q Consensus 70 v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~I-NG~-----------------~~LAC~t~v~~~~~~i 131 (230)
+++++ +.||||++++.+ +...++|+.|.||+|.++| .|. .+|+|.+.+.. .+
T Consensus 109 ~~v~~-geTILdAae~aG------I~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCqa~p~s---Di 178 (191)
T PTZ00038 109 IECDE-DEYILDAAERQG------VELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCYPKS---DC 178 (191)
T ss_pred EEeCC-CCcHHHHHHHcC------CCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEEEeeCEECC---Ce
Confidence 34445 789999999976 4578999999999999985 442 35888887763 26
Q ss_pred EEeeC
Q 026956 132 TITPL 136 (230)
Q Consensus 132 tIEPL 136 (230)
+|+-.
T Consensus 179 ~Ie~p 183 (191)
T PTZ00038 179 TIETH 183 (191)
T ss_pred EEecC
Confidence 66654
No 54
>PRK05713 hypothetical protein; Provisional
Probab=97.69 E-value=5.9e-05 Score=68.51 Aligned_cols=58 Identities=26% Similarity=0.443 Sum_probs=44.1
Q ss_pred EEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEe-CCe-----------------eeccccccccCCCC
Q 026956 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGS 129 (230)
Q Consensus 68 y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~I-NG~-----------------~~LAC~t~v~~~~~ 129 (230)
.++++.+ +.||||++...+ +...++|+.|.||+|.+.| .|. .+|+|.+.+..
T Consensus 9 ~~~~~~~-g~tlL~a~~~~g------i~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~--- 78 (312)
T PRK05713 9 RRWSVPA-GSNLLDALNAAG------VAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVG--- 78 (312)
T ss_pred eEEEECC-CCcHHHHHHHcC------CCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECC---
Confidence 3455556 889999999865 4467899999999999986 442 36999999873
Q ss_pred ceEEee
Q 026956 130 ASTITP 135 (230)
Q Consensus 130 ~itIEP 135 (230)
.++|+.
T Consensus 79 d~~i~~ 84 (312)
T PRK05713 79 DLRVEV 84 (312)
T ss_pred ceEEEe
Confidence 266664
No 55
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=97.64 E-value=9.4e-05 Score=57.72 Aligned_cols=33 Identities=30% Similarity=0.822 Sum_probs=28.0
Q ss_pred ChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEe-CC
Q 026956 76 GPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG 114 (230)
Q Consensus 76 ~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~I-NG 114 (230)
+.|||+++...+ +-..++||.|.||+|.|+| +|
T Consensus 22 g~tiLe~a~~~g------i~i~~~C~~g~C~TC~v~v~~G 55 (102)
T COG0633 22 GETLLEAAERNG------IPIEYACRGGACGTCRVKVLEG 55 (102)
T ss_pred CcHHHHHHHHCC------CcceecCCCCccCccEEEEecC
Confidence 789999999875 3377999999999999975 55
No 56
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=97.57 E-value=0.0003 Score=58.53 Aligned_cols=76 Identities=16% Similarity=0.393 Sum_probs=51.5
Q ss_pred CceEEEEEEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEeCC---------
Q 026956 45 TDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG--------- 114 (230)
Q Consensus 45 ~~~v~lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~ING--------- 114 (230)
..+|+|.|...| . ..++|++.+ |.|||++|+... . +.....|+ .|.||.|.|.|..
T Consensus 33 ~g~v~I~~~~~d--G------~~~~v~~~~-G~sLLeal~~~~-~----i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~ 98 (143)
T PTZ00490 33 PGKVKVCVKKRD--G------THCDVEVPV-GMSLMHALRDVA-K----LDVEGTCNGCMQCATCHVYLSAASFKKLGGP 98 (143)
T ss_pred CCcEEEEEEcCC--C------CEEEEEECC-CccHHHHHHHcC-C----CCccccCCCCCEeCCCEEEECCCccccCCCC
Confidence 346777776433 1 235677777 999999999843 1 23556688 8999999999843
Q ss_pred ----------------eeeccccccccCCCCceEEe
Q 026956 115 ----------------CNGLACLTKISPSGSASTIT 134 (230)
Q Consensus 115 ----------------~~~LAC~t~v~~~~~~itIE 134 (230)
..+|||+..+.+.-+.++|+
T Consensus 99 ~~~E~~~L~~~~~~~~gsRLaCQi~v~~~ldgl~V~ 134 (143)
T PTZ00490 99 SEEEEDVLAKALDVKETSRLACQVDLTPEMDGLEVE 134 (143)
T ss_pred ChHHHHHhhccccCCCCcEEeeeEEEecCCCCEEEE
Confidence 13599999997532334554
No 57
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=97.56 E-value=0.0001 Score=67.26 Aligned_cols=49 Identities=27% Similarity=0.619 Sum_probs=38.6
Q ss_pred EeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEe-CCe-------------------eecccccccc
Q 026956 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-------------------NGLACLTKIS 125 (230)
Q Consensus 70 v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~I-NG~-------------------~~LAC~t~v~ 125 (230)
+++++ +.||||+|+..+ +...++|+.|.||+|.++| .|. .+|+|.+.+.
T Consensus 14 ~~~~~-g~tlL~a~~~~g------i~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~ 82 (339)
T PRK07609 14 FTAEP-DETILDAALRQG------IHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAKPL 82 (339)
T ss_pred EEeCC-CCcHHHHHHHcC------CCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCEEC
Confidence 34445 889999999875 4588999999999999974 442 3599988886
No 58
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=97.50 E-value=0.00015 Score=66.74 Aligned_cols=50 Identities=30% Similarity=0.671 Sum_probs=39.1
Q ss_pred EEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEe-CCe-------------------eecccccccc
Q 026956 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-------------------NGLACLTKIS 125 (230)
Q Consensus 69 ~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~I-NG~-------------------~~LAC~t~v~ 125 (230)
.+++.+ +.||||+|++.+ +...++|+.|.||+|.++| .|. .+|+|.+.+.
T Consensus 16 ~~~~~~-g~tlL~a~~~~g------~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~ 85 (340)
T PRK11872 16 FFPVGK-DELLLDAALRNG------INLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQTRVK 85 (340)
T ss_pred EEEeCC-CCcHHHHHHHcC------CCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeCEEC
Confidence 344456 889999999875 5678999999999999975 443 3499988775
No 59
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=97.28 E-value=0.00037 Score=65.76 Aligned_cols=58 Identities=24% Similarity=0.531 Sum_probs=42.5
Q ss_pred EEEeecCCChhHHHHHHHhhhccCCCcccccCcCC-CccCcceEEe-CCe-------------------eeccccccccC
Q 026956 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE-GICGSCAMNI-DGC-------------------NGLACLTKISP 126 (230)
Q Consensus 68 y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~-GiCGsCaV~I-NG~-------------------~~LAC~t~v~~ 126 (230)
.++++.+ +.|||++++..+ +...++|+. |.||+|.|+| .|. .+|||++.+..
T Consensus 42 ~~~~~~~-g~tlL~a~~~~g------i~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rLaCq~~~~~ 114 (405)
T TIGR01941 42 KSITVPA-GGKLLNTLASNG------IFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRLSCQVKVKQ 114 (405)
T ss_pred eEEEECC-CChHHHHHHHcC------CCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEEEeeCEECC
Confidence 3445556 899999999875 346678995 8999999986 442 27999998864
Q ss_pred CCCceEEee
Q 026956 127 SGSASTITP 135 (230)
Q Consensus 127 ~~~~itIEP 135 (230)
+ ++||-
T Consensus 115 d---~~i~~ 120 (405)
T TIGR01941 115 D---MSIEI 120 (405)
T ss_pred C---EEEEE
Confidence 3 55553
No 60
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=97.14 E-value=0.00066 Score=64.15 Aligned_cols=51 Identities=27% Similarity=0.610 Sum_probs=39.2
Q ss_pred EEeecCCChhHHHHHHHhhhccCCCcccccCcCC-CccCcceEEe-CCe-------------------eeccccccccC
Q 026956 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE-GICGSCAMNI-DGC-------------------NGLACLTKISP 126 (230)
Q Consensus 69 ~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~-GiCGsCaV~I-NG~-------------------~~LAC~t~v~~ 126 (230)
++++.+ +.|||++|+..+ +...++|+. |.||+|.|+| .|. .+|||++.+..
T Consensus 47 ~~~~~~-g~tLL~a~~~~g------i~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq~~~~~ 118 (409)
T PRK05464 47 TITVPA-GGKLLGALASNG------IFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQVKVKQ 118 (409)
T ss_pred EEEECC-CchHHHHHHHcC------CCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEeeCEECC
Confidence 345556 899999999875 346678995 9999999986 552 36899988763
No 61
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=96.65 E-value=0.0011 Score=63.85 Aligned_cols=37 Identities=27% Similarity=0.760 Sum_probs=29.6
Q ss_pred HHHhcHHHhhhhchhhhcccCcccCC-----CCCcCHHHHHH
Q 026956 184 AKLDGMYECILCACCSTSCPSYWWTS-----EAYLGPAALLH 220 (230)
Q Consensus 184 ~~~~~~~~CI~CG~C~saCP~~~~~~-----~~FlGPaal~~ 220 (230)
+.+.....||.||.|+.+||++...+ ..|.||.....
T Consensus 287 ~~~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~ 328 (432)
T TIGR00273 287 TEFREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVW 328 (432)
T ss_pred hhhhhHhhCCCCCCccccCcchhccCccccccccCChHHHHH
Confidence 34788999999999999999996432 35899997654
No 62
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.33 E-value=0.0034 Score=66.14 Aligned_cols=46 Identities=24% Similarity=0.463 Sum_probs=32.8
Q ss_pred hhHHHHHHHhhhccCC----CcccccCcCCCccCcceEEeCCeeeccccc
Q 026956 77 PMVLDALIKIKSEIDP----SLTFRRSCREGICGSCAMNIDGCNGLACLT 122 (230)
Q Consensus 77 ~TvLdaL~~i~~~~d~----~l~fr~gCr~GiCGsCaV~ING~~~LAC~t 122 (230)
..+++++..+.....- ++.-+..|+.|+||+|.|.++|...++|..
T Consensus 190 ~~Mm~av~~~~~~~gi~~~vSle~~M~cG~G~Cg~C~v~~~~~~~~~C~D 239 (1006)
T PRK12775 190 LPMMNACVETTRPFGVKTMVSLNAIMVDGTGMCGSCRVTVGGEVKFACVD 239 (1006)
T ss_pred HHHHHHHHHHHHHCCCcEEECChhheeCccceeCCCEeeeCCceEEEeCC
Confidence 3456655554322221 466677899999999999999988888864
No 63
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.28 E-value=0.0044 Score=62.91 Aligned_cols=30 Identities=30% Similarity=0.672 Sum_probs=24.4
Q ss_pred CcccccCcCCCccCcceEEeCCeeeccccc
Q 026956 93 SLTFRRSCREGICGSCAMNIDGCNGLACLT 122 (230)
Q Consensus 93 ~l~fr~gCr~GiCGsCaV~ING~~~LAC~t 122 (230)
||.-+..|+.|+||+|.|...|...+.|..
T Consensus 210 Sle~~M~CG~G~C~~C~v~~~~~~~~~C~d 239 (752)
T PRK12778 210 SLNTIMVDGTGMCGACRVTVGGKTKFACVD 239 (752)
T ss_pred eCcccccCcccccCcceeEeCCCeEEEECC
Confidence 455677899999999999988866678854
No 64
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.96 E-value=0.0016 Score=38.04 Aligned_cols=17 Identities=35% Similarity=1.079 Sum_probs=15.2
Q ss_pred cHHHhhhhchhhhcccC
Q 026956 188 GMYECILCACCSTSCPS 204 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~ 204 (230)
+...||.|++|..+||+
T Consensus 6 D~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 6 DLERCIGCGACEVACPV 22 (22)
T ss_pred ccccccCchhHHHhhCc
Confidence 46799999999999985
No 65
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=95.50 E-value=0.015 Score=57.58 Aligned_cols=59 Identities=19% Similarity=0.353 Sum_probs=47.0
Q ss_pred EEEEeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEeCC--eeeccccccccCC
Q 026956 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG--CNGLACLTKISPS 127 (230)
Q Consensus 67 ~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~ING--~~~LAC~t~v~~~ 127 (230)
.+.|.+++ |+|||.+-..++ -..|-|.|+.--- .|.|-.|.|.|.- +|+-||.+++-.|
T Consensus 39 ~~~v~v~p-g~tvlqac~~~g-v~iprfcyh~rlsvagncrmclvevekspkpva~campvm~g 100 (708)
T KOG2282|consen 39 DQSVMVEP-GTTVLQACAKVG-VDIPRFCYHERLSVAGNCRMCLVEVEKSPKPVAACAMPVMKG 100 (708)
T ss_pred CeeEeeCC-CcHHHHHHHHhC-CCcchhhhhhhhhhccceeEEEEEeccCCCcchhhcccccCC
Confidence 35677777 999999999997 4567788876332 6788889998876 7999999999765
No 66
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.37 E-value=0.0051 Score=36.36 Aligned_cols=17 Identities=35% Similarity=0.874 Sum_probs=15.0
Q ss_pred cHHHhhhhchhhhcccC
Q 026956 188 GMYECILCACCSTSCPS 204 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~ 204 (230)
+...|+.||.|+.+||.
T Consensus 5 d~~~C~~Cg~C~~~Cp~ 21 (24)
T PF12837_consen 5 DPDKCIGCGDCVRVCPE 21 (24)
T ss_pred ChhhCcChhHHHHhcch
Confidence 35689999999999996
No 67
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=95.33 E-value=0.0039 Score=34.01 Aligned_cols=15 Identities=40% Similarity=1.132 Sum_probs=13.6
Q ss_pred HHhhhhchhhhcccC
Q 026956 190 YECILCACCSTSCPS 204 (230)
Q Consensus 190 ~~CI~CG~C~saCP~ 204 (230)
..||.|+.|+.+||+
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 479999999999996
No 68
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=95.25 E-value=0.0034 Score=42.76 Aligned_cols=18 Identities=39% Similarity=1.215 Sum_probs=13.1
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
+..||.||.|+++||++.
T Consensus 2 ~~~Ci~Cg~C~~~CP~~~ 19 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPVYR 19 (57)
T ss_dssp HHC--S-SHHHHCSHHHH
T ss_pred HHHccCccChHHHChhhh
Confidence 578999999999999764
No 69
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.21 E-value=0.005 Score=32.68 Aligned_cols=14 Identities=36% Similarity=1.070 Sum_probs=12.7
Q ss_pred hhhhchhhhcccCc
Q 026956 192 CILCACCSTSCPSY 205 (230)
Q Consensus 192 CI~CG~C~saCP~~ 205 (230)
|+.||.|+.+||+-
T Consensus 1 C~~C~~C~~~Cp~~ 14 (15)
T PF12798_consen 1 CTGCGACVEVCPTG 14 (15)
T ss_pred CCCchHHHHHhcCC
Confidence 88999999999973
No 70
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=95.04 E-value=0.009 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.725 Sum_probs=22.7
Q ss_pred ccCcCCCccCcceEEeCCeeecccc
Q 026956 97 RRSCREGICGSCAMNIDGCNGLACL 121 (230)
Q Consensus 97 r~gCr~GiCGsCaV~ING~~~LAC~ 121 (230)
...|+.|+||+|++.++|.++++|.
T Consensus 214 ~m~cg~G~C~~C~~~~~~~~~~~C~ 238 (250)
T PRK00054 214 RMKCGIGACGACVCDTETGGKRVCK 238 (250)
T ss_pred cccCcCcccCcCCcccCCCCEEEeC
Confidence 4589999999999999999889995
No 71
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=94.70 E-value=0.0069 Score=35.53 Aligned_cols=17 Identities=35% Similarity=0.821 Sum_probs=14.2
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|+.+||.-
T Consensus 5 ~~~C~~Cg~C~~~CP~~ 21 (24)
T PF00037_consen 5 PDKCIGCGRCVEACPFD 21 (24)
T ss_dssp TTTSSS-THHHHHSTTS
T ss_pred hHHCCCcchhhhhcccc
Confidence 46899999999999975
No 72
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=94.65 E-value=0.017 Score=40.02 Aligned_cols=31 Identities=32% Similarity=0.708 Sum_probs=21.4
Q ss_pred HhhhhchhhhcccCcccCCCCCcCHHHHHHHHHh
Q 026956 191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANSI 224 (230)
Q Consensus 191 ~CI~CG~C~saCP~~~~~~~~FlGPaal~~a~R~ 224 (230)
.|+.||.|+.+||++...+ .+ |..+.+++++
T Consensus 1 ~C~~Cg~C~~~CP~~~~~~-~~--~~~~~~~~~~ 31 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIATP-DE--PRSPMRAIYL 31 (61)
T ss_dssp T----STTGGGSHHHHHCT-TT--HHHHHHHHHH
T ss_pred CCCCCCcCcccCCCccccC-cc--HHHHHHHHHH
Confidence 4999999999999997653 23 8888888776
No 73
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=94.28 E-value=0.029 Score=48.71 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=25.8
Q ss_pred CcccccCcCCCccCcceEEeCCeeeccccc
Q 026956 93 SLTFRRSCREGICGSCAMNIDGCNGLACLT 122 (230)
Q Consensus 93 ~l~fr~gCr~GiCGsCaV~ING~~~LAC~t 122 (230)
++.-+..|+.|+||+|.+..+|..++.|..
T Consensus 209 s~~~~m~Cg~G~C~~C~~~~~~~~~~~C~~ 238 (243)
T cd06192 209 SNNSPMCCGIGICGACTIETKHGVKRLCKD 238 (243)
T ss_pred ECCccccCccccccceEEEeCCCeEEEeCC
Confidence 455667899999999999999988899964
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.10 E-value=0.091 Score=55.30 Aligned_cols=65 Identities=11% Similarity=-0.013 Sum_probs=47.4
Q ss_pred eecCCChhHHHHHHHhhhccCCCccccc------CcCCCccCcceEEeCCe-----eeccccccccCCCCceEEeeCCCC
Q 026956 71 NLKECGPMVLDALIKIKSEIDPSLTFRR------SCREGICGSCAMNIDGC-----NGLACLTKISPSGSASTITPLPHM 139 (230)
Q Consensus 71 ~v~~~~~TvLdaL~~i~~~~d~~l~fr~------gCr~GiCGsCaV~ING~-----~~LAC~t~v~~~~~~itIEPL~~~ 139 (230)
+..+ |.||.-||.......- .-+|++ -|..|.|-.|-|.|||. ++.||.|.+.+| ++|+.....
T Consensus 23 ~~~~-g~t~a~al~a~g~~~~-~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~~~~~~ac~~~~~~g---m~~~~~~~~ 97 (985)
T TIGR01372 23 SGFA-GDTLASALLANGVHLV-GRSFKYHRPRGILTAGVEEPNALVTVGSGAQREPNTRATTQELYDG---LVATSQNRW 97 (985)
T ss_pred ecCC-CCHHHHHHHhCCCeee-cccCCCCCCCcccccCccCCCeEEEECCCcCCCCCccceeEEcccC---CEEecccCC
Confidence 3335 8999999998552221 124433 39888899999999973 578999999987 788877655
Q ss_pred c
Q 026956 140 F 140 (230)
Q Consensus 140 p 140 (230)
|
T Consensus 98 ~ 98 (985)
T TIGR01372 98 P 98 (985)
T ss_pred C
Confidence 3
No 75
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=93.77 E-value=0.026 Score=54.71 Aligned_cols=35 Identities=29% Similarity=0.790 Sum_probs=27.2
Q ss_pred HHhcHHHhhhhchhhhcccCcccC-----CCCCcCHHHHH
Q 026956 185 KLDGMYECILCACCSTSCPSYWWT-----SEAYLGPAALL 219 (230)
Q Consensus 185 ~~~~~~~CI~CG~C~saCP~~~~~-----~~~FlGPaal~ 219 (230)
.+...-.||.||+|+-.||+|... .+-|.||..-.
T Consensus 303 ~~re~L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v 342 (459)
T COG1139 303 EFREALRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVV 342 (459)
T ss_pred HHHHHHHhhcchHhhhcChhhhhccCeecccccCCcccce
Confidence 456677999999999999999542 25688887644
No 76
>PRK05802 hypothetical protein; Provisional
Probab=93.24 E-value=0.053 Score=50.03 Aligned_cols=33 Identities=30% Similarity=0.696 Sum_probs=28.2
Q ss_pred CcccccCcCCCccCcceEEeCCe-eecccccccc
Q 026956 93 SLTFRRSCREGICGSCAMNIDGC-NGLACLTKIS 125 (230)
Q Consensus 93 ~l~fr~gCr~GiCGsCaV~ING~-~~LAC~t~v~ 125 (230)
++.-+..|+.|+||+|+|..+|. ..+.|+++++
T Consensus 285 Sle~~M~CG~G~Cg~C~v~~~g~~~~r~Ck~q~~ 318 (320)
T PRK05802 285 SNNAKMCCGEGICGACTVRYGGHKVKRLCKVQVD 318 (320)
T ss_pred eCCCeeeCcCccCCeeEEEECCEEEEEEeeeecC
Confidence 46668899999999999999885 3688999875
No 77
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=92.74 E-value=0.041 Score=37.13 Aligned_cols=18 Identities=33% Similarity=0.927 Sum_probs=14.1
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
....|+.||.|+.+||.-
T Consensus 36 ~~~~C~~Cg~C~~~CP~~ 53 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTG 53 (55)
T ss_dssp TGGG--TTCHHHHHSTTT
T ss_pred CCCccccHhHHHHHcchh
Confidence 467999999999999974
No 78
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=92.73 E-value=0.029 Score=37.69 Aligned_cols=15 Identities=40% Similarity=1.052 Sum_probs=10.4
Q ss_pred HHHhhhhchhhhccc
Q 026956 189 MYECILCACCSTSCP 203 (230)
Q Consensus 189 ~~~CI~CG~C~saCP 203 (230)
..+||.||.|+++||
T Consensus 38 ~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 38 PERCIGCGACVEVCP 52 (52)
T ss_dssp TTT--TTSHHHHH-T
T ss_pred cccccccChhhhhCc
Confidence 458999999999998
No 79
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=92.73 E-value=0.037 Score=37.13 Aligned_cols=18 Identities=33% Similarity=0.804 Sum_probs=8.2
Q ss_pred hcHHHhhhhchhhhcccC
Q 026956 187 DGMYECILCACCSTSCPS 204 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~ 204 (230)
.+...||.||.|+.+||.
T Consensus 4 id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 4 IDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp --TT------TTGGG-TT
T ss_pred cCcccCcCCcChHHHccc
Confidence 346689999999999999
No 80
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=92.03 E-value=0.15 Score=44.66 Aligned_cols=36 Identities=28% Similarity=0.692 Sum_probs=27.0
Q ss_pred cHHHhhhhchhhhcccCcccCCCCCcCHHHHHHHHHhcc
Q 026956 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANSIGL 226 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~~~~~~~FlGPaal~~a~R~~~ 226 (230)
.+..|++||.|.++||+... .+ .+|--|.+-.|+..
T Consensus 37 ~l~~C~QCG~CT~sCPs~r~--t~-y~pR~ii~~~~~g~ 72 (195)
T COG1150 37 YLEGCYQCGTCTGSCPSGRF--TD-YSPRKIIRKARLGL 72 (195)
T ss_pred hHhHhhccCcccCCCCCccc--CC-CCHHHHHHHHHccc
Confidence 35679999999999999875 33 46777777666543
No 81
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=91.86 E-value=0.051 Score=36.67 Aligned_cols=16 Identities=38% Similarity=0.939 Sum_probs=12.0
Q ss_pred HhhhhchhhhcccCcc
Q 026956 191 ECILCACCSTSCPSYW 206 (230)
Q Consensus 191 ~CI~CG~C~saCP~~~ 206 (230)
.||.||.|+.+||...
T Consensus 1 kCi~Cg~C~~~CP~~~ 16 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGV 16 (55)
T ss_dssp C--TTTHHHHHSTTT-
T ss_pred CCCCcchHHHHCCccC
Confidence 4999999999999874
No 82
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=91.74 E-value=0.11 Score=45.59 Aligned_cols=27 Identities=26% Similarity=0.648 Sum_probs=22.0
Q ss_pred ccccCcCCCccCcceEEeCCeeecccc
Q 026956 95 TFRRSCREGICGSCAMNIDGCNGLACL 121 (230)
Q Consensus 95 ~fr~gCr~GiCGsCaV~ING~~~LAC~ 121 (230)
.-+..|+.|+||+|+|...|...+.|.
T Consensus 211 e~~m~Cg~G~C~~C~~~~~~~~~~~C~ 237 (248)
T cd06219 211 NPIMVDGTGMCGACRVTVGGETKFACV 237 (248)
T ss_pred cccccCccceeeeEEEEeCCCEEEEeC
Confidence 345689999999999998885567775
No 83
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=91.18 E-value=0.13 Score=45.10 Aligned_cols=24 Identities=25% Similarity=0.609 Sum_probs=21.9
Q ss_pred cCcCCCccCcceEEeC---Ceeecccc
Q 026956 98 RSCREGICGSCAMNID---GCNGLACL 121 (230)
Q Consensus 98 ~gCr~GiCGsCaV~IN---G~~~LAC~ 121 (230)
.-|.+|+||+|.+... |.+.++|.
T Consensus 214 ~~~~~g~c~~c~~~~~~~~~~~~~~c~ 240 (246)
T cd06218 214 MACGIGACLGCVVKTKDDEGGYKRVCK 240 (246)
T ss_pred ccCccceecccEEEeecCCCccEEEeC
Confidence 3699999999999987 99999996
No 84
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=90.68 E-value=0.066 Score=38.90 Aligned_cols=19 Identities=32% Similarity=0.807 Sum_probs=16.6
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
.....|+.||.|+.+||+.
T Consensus 47 ~~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 47 YGEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred cCCccCCCcChHhhhcCCC
Confidence 3567999999999999985
No 85
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=90.55 E-value=0.099 Score=47.13 Aligned_cols=30 Identities=27% Similarity=0.563 Sum_probs=24.5
Q ss_pred CCcccccCcCCCccCcceEEeCCeeecccc
Q 026956 92 PSLTFRRSCREGICGSCAMNIDGCNGLACL 121 (230)
Q Consensus 92 ~~l~fr~gCr~GiCGsCaV~ING~~~LAC~ 121 (230)
-+|.++..|+.|.||+|.|..+|-..++|.
T Consensus 243 ~~l~~~m~cg~g~c~~c~~~~~~~~~~~c~ 272 (289)
T PRK08345 243 VTLERRMRCGIGKCGHCIVGTSTSIKYVCK 272 (289)
T ss_pred EEehhcccccCcccCCCccCCCCcceEEeC
Confidence 357788899999999999998874456774
No 86
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=90.45 E-value=0.25 Score=49.08 Aligned_cols=45 Identities=31% Similarity=0.715 Sum_probs=36.8
Q ss_pred CChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEe-CC-----------------eeecccccccc
Q 026956 75 CGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNI-DG-----------------CNGLACLTKIS 125 (230)
Q Consensus 75 ~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~I-NG-----------------~~~LAC~t~v~ 125 (230)
+++|+||+-|++. ...|.-|+ -|.||-|-|.| +| ..+|||++++.
T Consensus 16 ~g~~il~aar~~g------v~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~v~ 79 (614)
T COG3894 16 EGTTILDAARRLG------VYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQVL 79 (614)
T ss_pred CCchHHHHHHhhC------ceEeeecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehhhc
Confidence 3899999999997 35677898 69999999975 33 25699999997
No 87
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=90.37 E-value=0.23 Score=32.81 Aligned_cols=25 Identities=28% Similarity=0.744 Sum_probs=18.3
Q ss_pred ccCcCCCccCcceEEeCCe--eecccc
Q 026956 97 RRSCREGICGSCAMNIDGC--NGLACL 121 (230)
Q Consensus 97 r~gCr~GiCGsCaV~ING~--~~LAC~ 121 (230)
+..|+.|+||+|.+...+. ..+.|.
T Consensus 3 ~M~CG~G~C~~C~v~~~~~~~~~~vC~ 29 (40)
T PF10418_consen 3 RMACGVGACGGCVVPVKDGDGYKRVCK 29 (40)
T ss_dssp --SSSSSSS-TTEEECSSTTSEEETTT
T ss_pred cccCCCcEeCCcEeeeecCCcCEEEeC
Confidence 4579999999999998865 667774
No 88
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=89.85 E-value=1.7 Score=31.35 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=34.2
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeeccccccccCCCCceEEeeC
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPL 136 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~~~~~~itIEPL 136 (230)
.+.++++++ ++||.++|..+. +++ -.++|.+||+.+.. .+.+.++..+-.|.|.
T Consensus 14 ~~~~~~~~~-~~tv~~ll~~l~--~~~-------------~~v~v~vNg~iv~~-~~~l~~gD~Veii~~V 67 (70)
T PRK08364 14 IEKEIEWRK-GMKVADILRAVG--FNT-------------ESAIAKVNGKVALE-DDPVKDGDYVEVIPVV 67 (70)
T ss_pred cceEEEcCC-CCcHHHHHHHcC--CCC-------------ccEEEEECCEECCC-CcCcCCCCEEEEEccc
Confidence 345566666 799999999874 221 23799999999864 4445554333334443
No 89
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=89.65 E-value=0.086 Score=35.47 Aligned_cols=16 Identities=38% Similarity=1.026 Sum_probs=9.8
Q ss_pred HhhhhchhhhcccCcc
Q 026956 191 ECILCACCSTSCPSYW 206 (230)
Q Consensus 191 ~CI~CG~C~saCP~~~ 206 (230)
.||.||.|+.+||...
T Consensus 1 ~C~~C~~C~~~CP~~~ 16 (52)
T PF12838_consen 1 KCIGCGACVEACPTGA 16 (52)
T ss_dssp C-SS--HHHHH-TTHH
T ss_pred CCCCcCchHHhcCccc
Confidence 4899999999999763
No 90
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=89.64 E-value=0.089 Score=38.80 Aligned_cols=17 Identities=35% Similarity=0.893 Sum_probs=14.9
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.||.|+++||..
T Consensus 28 ~~~Ci~Cg~C~~~CP~~ 44 (99)
T COG1145 28 AEKCIGCGLCVKVCPTG 44 (99)
T ss_pred ccccCCCCCchhhCCHH
Confidence 34599999999999996
No 91
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=89.35 E-value=0.092 Score=37.06 Aligned_cols=16 Identities=38% Similarity=0.993 Sum_probs=10.0
Q ss_pred HHHhhhhchhhhcccC
Q 026956 189 MYECILCACCSTSCPS 204 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~ 204 (230)
...||.||.|+.+||.
T Consensus 5 ~~~Ci~Cg~C~~~Cp~ 20 (59)
T PF14697_consen 5 EDKCIGCGKCVRACPD 20 (59)
T ss_dssp TTT----SCCCHHCCC
T ss_pred cccccChhhHHhHcCc
Confidence 4589999999999995
No 92
>PLN00071 photosystem I subunit VII; Provisional
Probab=89.27 E-value=0.1 Score=38.23 Aligned_cols=28 Identities=29% Similarity=0.869 Sum_probs=22.8
Q ss_pred HHhhhhchhhhcccCcccCCCCCcCHHH
Q 026956 190 YECILCACCSTSCPSYWWTSEAYLGPAA 217 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~~~~~~FlGPaa 217 (230)
..|+.||.|..+||.-...-..|.||..
T Consensus 46 ~~C~~Cg~C~~~CP~~Ai~~~~~~~~~~ 73 (81)
T PLN00071 46 EDCVGCKRCESACPTDFLSVRVYLGHET 73 (81)
T ss_pred CcCcChhhHHhhcCCccceEeeeecchh
Confidence 4799999999999987555567888865
No 93
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=88.91 E-value=0.1 Score=35.92 Aligned_cols=19 Identities=32% Similarity=0.782 Sum_probs=11.5
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
.....|+.||.|.++||.-
T Consensus 41 ~~~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 41 HAASLCIGCGLCESVCPQG 59 (61)
T ss_dssp TTTTT--S--HHHHH-TT-
T ss_pred cccccCcCcCcCcccccCC
Confidence 5678999999999999973
No 94
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=88.44 E-value=0.17 Score=33.99 Aligned_cols=17 Identities=29% Similarity=0.804 Sum_probs=11.1
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|+.+||+-
T Consensus 35 ~~~C~~C~~C~~~CP~~ 51 (52)
T PF12838_consen 35 PDKCTGCGACVEVCPTG 51 (52)
T ss_dssp GGG----SHHHHHTTTS
T ss_pred chhCcCcChhhhhCcCc
Confidence 56899999999999973
No 95
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=88.43 E-value=0.31 Score=43.73 Aligned_cols=29 Identities=31% Similarity=0.675 Sum_probs=24.2
Q ss_pred CcccccCcCCCccCcceEEeCCeeecccc
Q 026956 93 SLTFRRSCREGICGSCAMNIDGCNGLACL 121 (230)
Q Consensus 93 ~l~fr~gCr~GiCGsCaV~ING~~~LAC~ 121 (230)
+|.-+..|+.|.||+|+|...|...+.|.
T Consensus 210 sle~~M~CG~G~C~~C~v~~~~~~~~~C~ 238 (281)
T PRK06222 210 SLNPIMVDGTGMCGACRVTVGGETKFACV 238 (281)
T ss_pred ECcccccCcccccceeEEEECCCEEEEeC
Confidence 57777899999999999998885567775
No 96
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=88.36 E-value=0.15 Score=35.92 Aligned_cols=16 Identities=38% Similarity=0.943 Sum_probs=11.1
Q ss_pred HHHhhhhchhhhcccC
Q 026956 189 MYECILCACCSTSCPS 204 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~ 204 (230)
...|+.||.|+.+||+
T Consensus 38 ~~~C~GCg~C~~~CPv 53 (59)
T PF14697_consen 38 PDKCIGCGLCVKVCPV 53 (59)
T ss_dssp -TT--S-SCCCCCSSS
T ss_pred cccCcCcCcccccCCC
Confidence 3589999999999997
No 97
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=87.94 E-value=0.3 Score=42.22 Aligned_cols=22 Identities=41% Similarity=0.961 Sum_probs=18.5
Q ss_pred cCcCCCccCcceEEeCCeeecccc
Q 026956 98 RSCREGICGSCAMNIDGCNGLACL 121 (230)
Q Consensus 98 ~gCr~GiCGsCaV~ING~~~LAC~ 121 (230)
..|+.|+||+|.|..+|+ ++|.
T Consensus 201 ~~cg~g~C~~C~v~~~~~--~~c~ 222 (233)
T cd06220 201 MKCGIGICGSCCIDPTGL--RVCR 222 (233)
T ss_pred ccCcCCCcCccEeccCCe--EEeC
Confidence 379999999999999984 5664
No 98
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=87.76 E-value=0.15 Score=43.66 Aligned_cols=20 Identities=30% Similarity=0.821 Sum_probs=17.5
Q ss_pred cHHHhhhhchhhhcccCccc
Q 026956 188 GMYECILCACCSTSCPSYWW 207 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~~~ 207 (230)
++..||-||.|+.+||+...
T Consensus 93 n~grCIfCg~C~e~CPt~Al 112 (172)
T COG1143 93 NLGRCIFCGLCVEVCPTGAL 112 (172)
T ss_pred ccccccccCchhhhCchhhh
Confidence 47799999999999999753
No 99
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=87.35 E-value=0.33 Score=48.10 Aligned_cols=25 Identities=32% Similarity=0.837 Sum_probs=20.3
Q ss_pred HHHHHhcHHHhhhhchhhhcccCcc
Q 026956 182 DRAKLDGMYECILCACCSTSCPSYW 206 (230)
Q Consensus 182 ~~~~~~~~~~CI~CG~C~saCP~~~ 206 (230)
+......+.+||+||.|..+||+.-
T Consensus 396 ~e~~~~~l~dCIECg~Ca~vCPs~i 420 (529)
T COG4656 396 DEEEEHNLLDCIECGACAYVCPSNI 420 (529)
T ss_pred hHHHHHHhhhhhhhCcchhcCCCCC
Confidence 3345567889999999999999973
No 100
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=86.73 E-value=0.16 Score=43.92 Aligned_cols=20 Identities=35% Similarity=0.850 Sum_probs=17.5
Q ss_pred hcHHHhhhhchhhhcccCcc
Q 026956 187 DGMYECILCACCSTSCPSYW 206 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~~ 206 (230)
.++..||-||-|+.+||+-.
T Consensus 147 IDmtkCIyCG~CqEaCPvda 166 (212)
T KOG3256|consen 147 IDMTKCIYCGFCQEACPVDA 166 (212)
T ss_pred ccceeeeeecchhhhCCccc
Confidence 35889999999999999964
No 101
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=86.59 E-value=0.23 Score=33.57 Aligned_cols=15 Identities=40% Similarity=1.267 Sum_probs=8.5
Q ss_pred HHhhhhchhhhcccC
Q 026956 190 YECILCACCSTSCPS 204 (230)
Q Consensus 190 ~~CI~CG~C~saCP~ 204 (230)
..|+.||.|..+||+
T Consensus 41 ~~C~~C~~C~~~CP~ 55 (57)
T PF13183_consen 41 WSCTTCGACSEVCPV 55 (57)
T ss_dssp GG-----HHHHH-TT
T ss_pred cCCcCcCCccCcCcc
Confidence 899999999999997
No 102
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=86.30 E-value=0.27 Score=34.83 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=14.9
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.||.|+..||.+
T Consensus 5 ~~~C~gcg~C~~~aP~v 21 (65)
T PF13459_consen 5 RDRCIGCGLCVELAPEV 21 (65)
T ss_pred cccCcCccHHHhhCCcc
Confidence 45899999999999965
No 103
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=85.84 E-value=1.3 Score=41.60 Aligned_cols=63 Identities=24% Similarity=0.528 Sum_probs=43.3
Q ss_pred ceEEEEEEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEeC--C--------
Q 026956 46 DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID--G-------- 114 (230)
Q Consensus 46 ~~v~lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~IN--G-------- 114 (230)
-.+|++|.- ||+ .+.+++ . |.+||.+|..-+ +-....|+ .|.||-|-|+|- |
T Consensus 35 gd~ti~IN~-d~e-------~~~t~~--a-G~kLL~~L~~~g------ifi~SaCGGggsC~QCkv~v~~ggge~LpTe~ 97 (410)
T COG2871 35 GDITIKING-DPE-------KTKTVP--A-GGKLLGALASSG------IFISSACGGGGSCGQCKVRVKKGGGEILPTEL 97 (410)
T ss_pred CceEEEeCC-Chh-------hceecC--C-chhHHHHHHhCC------cccccCCCCCccccccEEEEecCCCccCcchh
Confidence 446777754 333 334454 5 789999998754 23445688 689999999863 2
Q ss_pred ----------eeecccccccc
Q 026956 115 ----------CNGLACLTKIS 125 (230)
Q Consensus 115 ----------~~~LAC~t~v~ 125 (230)
--+|||++.+.
T Consensus 98 sh~skrea~eG~RLsCQ~~Vk 118 (410)
T COG2871 98 SHISKREAKEGWRLSCQVNVK 118 (410)
T ss_pred hhhhhhhhhccceEEEEeccc
Confidence 14699999997
No 104
>COG1146 Ferredoxin [Energy production and conversion]
Probab=85.77 E-value=0.23 Score=35.41 Aligned_cols=17 Identities=41% Similarity=0.903 Sum_probs=15.5
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.||.|..+||+.
T Consensus 40 ~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 40 PEECIDCGLCELACPVG 56 (68)
T ss_pred cccCccchhhhhhCCcc
Confidence 45899999999999997
No 105
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=85.29 E-value=0.29 Score=36.29 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=16.2
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
.+...||.||.|+.+||.-
T Consensus 18 i~~~~Ci~C~~Cv~~CP~~ 36 (91)
T TIGR02936 18 IDQEKCIGCGRCYKVCGRD 36 (91)
T ss_pred ECHhHCCCcchHHHHcChh
Confidence 3567899999999999954
No 106
>CHL00065 psaC photosystem I subunit VII
Probab=84.64 E-value=0.18 Score=37.11 Aligned_cols=27 Identities=30% Similarity=0.893 Sum_probs=20.7
Q ss_pred HHhhhhchhhhcccCcccCCCCCcCHH
Q 026956 190 YECILCACCSTSCPSYWWTSEAYLGPA 216 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~~~~~~FlGPa 216 (230)
..|+.||.|..+||.-...-..|.|+.
T Consensus 46 ~~C~~C~~C~~~CP~~Ai~~~~~~~~~ 72 (81)
T CHL00065 46 EDCVGCKRCESACPTDFLSVRVYLGHE 72 (81)
T ss_pred CcCCChhhhhhhcCccccEEEEEecce
Confidence 369999999999998654435677764
No 107
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=84.17 E-value=0.24 Score=36.32 Aligned_cols=28 Identities=29% Similarity=0.885 Sum_probs=22.3
Q ss_pred HHhhhhchhhhcccCcccCCCCCcCHHH
Q 026956 190 YECILCACCSTSCPSYWWTSEAYLGPAA 217 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~~~~~~FlGPaa 217 (230)
..|+.||.|..+||.-...-..|.||..
T Consensus 45 ~~C~~Cg~C~~~CP~~ai~~~~~~~~~~ 72 (80)
T TIGR03048 45 EDCVGCKRCESACPTDFLSVRVYLGAET 72 (80)
T ss_pred CcCcChhHHHHhcCcccCEEEEecCchh
Confidence 4799999999999986544467888764
No 108
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=83.98 E-value=0.28 Score=34.41 Aligned_cols=18 Identities=33% Similarity=0.848 Sum_probs=15.3
Q ss_pred HhhhhchhhhcccCcccC
Q 026956 191 ECILCACCSTSCPSYWWT 208 (230)
Q Consensus 191 ~CI~CG~C~saCP~~~~~ 208 (230)
.|+.||.|+.+||.-...
T Consensus 1 ~C~~C~~C~~~CP~~AI~ 18 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAIS 18 (67)
T ss_pred CCcchhHHHHhCcHhhcc
Confidence 399999999999997543
No 109
>PRK02651 photosystem I subunit VII; Provisional
Probab=83.24 E-value=0.2 Score=36.50 Aligned_cols=28 Identities=32% Similarity=0.888 Sum_probs=22.1
Q ss_pred HHhhhhchhhhcccCcccCCCCCcCHHH
Q 026956 190 YECILCACCSTSCPSYWWTSEAYLGPAA 217 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~~~~~~FlGPaa 217 (230)
..|+.||.|..+||.-...-..|+||+.
T Consensus 46 ~~C~~Cg~C~~~CP~~ai~~~~~~~~~~ 73 (81)
T PRK02651 46 EDCVGCKRCETACPTDFLSIRVYLGAET 73 (81)
T ss_pred CcCCChhhhhhhcCCCceEEEEEeccce
Confidence 4799999999999986443356888875
No 110
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=82.54 E-value=0.4 Score=41.03 Aligned_cols=18 Identities=33% Similarity=0.929 Sum_probs=16.0
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...||.||.|+.+||..
T Consensus 60 ~~~kCi~Cg~C~~aCP~~ 77 (183)
T TIGR00403 60 EFDKCIACEVCVRVCPIN 77 (183)
T ss_pred CcccCcCcCChhhhCCCC
Confidence 456899999999999986
No 111
>PRK02651 photosystem I subunit VII; Provisional
Probab=81.94 E-value=0.36 Score=35.19 Aligned_cols=18 Identities=33% Similarity=0.719 Sum_probs=15.6
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
....||.||.|+.+||..
T Consensus 7 ~~~~Ci~C~~C~~~CP~~ 24 (81)
T PRK02651 7 IYDTCIGCTQCVRACPLD 24 (81)
T ss_pred ccccCCCcchHHHHCCcc
Confidence 357999999999999964
No 112
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=81.84 E-value=0.4 Score=33.50 Aligned_cols=17 Identities=29% Similarity=0.675 Sum_probs=11.2
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.||.|+..+|.+
T Consensus 3 ~~~Ci~Cg~C~~~aP~v 19 (58)
T PF13370_consen 3 RDKCIGCGLCVEIAPDV 19 (58)
T ss_dssp TTT--S-SHHHHH-TTT
T ss_pred hhhCcCCChHHHhCcHh
Confidence 35899999999999987
No 113
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=81.27 E-value=0.45 Score=39.98 Aligned_cols=17 Identities=35% Similarity=0.972 Sum_probs=15.3
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.||.|+.+||..
T Consensus 58 ~~~Ci~Cg~C~~aCP~~ 74 (167)
T CHL00014 58 FDKCIACEVCVRVCPID 74 (167)
T ss_pred cccCCCcCcHHHhCCCC
Confidence 56899999999999975
No 114
>CHL00065 psaC photosystem I subunit VII
Probab=81.14 E-value=0.37 Score=35.39 Aligned_cols=17 Identities=35% Similarity=0.919 Sum_probs=14.9
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.||.|+.+||.-
T Consensus 8 ~~~Ci~Cg~C~~~CP~~ 24 (81)
T CHL00065 8 YDTCIGCTQCVRACPTD 24 (81)
T ss_pred cccCCChhHHHHHCCcc
Confidence 45899999999999954
No 115
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=80.90 E-value=0.45 Score=36.69 Aligned_cols=19 Identities=26% Similarity=0.693 Sum_probs=16.1
Q ss_pred cHHHhhhhchhhhcccCcc
Q 026956 188 GMYECILCACCSTSCPSYW 206 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~~ 206 (230)
+...||.||.|+.+||...
T Consensus 14 d~~~Ci~C~~Cv~aCP~~a 32 (103)
T PRK09626 14 DESRCKACDICVSVCPAGV 32 (103)
T ss_pred CcccccCCcchhhhcChhh
Confidence 4568999999999999853
No 116
>PRK10194 ferredoxin-type protein; Provisional
Probab=80.87 E-value=0.45 Score=39.56 Aligned_cols=20 Identities=20% Similarity=0.615 Sum_probs=16.1
Q ss_pred hcHHHhhhhchhhhcccCcc
Q 026956 187 DGMYECILCACCSTSCPSYW 206 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~~ 206 (230)
+....||.||.|+.+||.-.
T Consensus 31 ~~~~~C~~Cg~C~~aCp~~~ 50 (163)
T PRK10194 31 HFLTHCTRCDACINACENNI 50 (163)
T ss_pred HHhhhCcChhHHHHHcChhh
Confidence 34678999999999999753
No 117
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=79.98 E-value=0.53 Score=40.30 Aligned_cols=17 Identities=35% Similarity=1.001 Sum_probs=14.9
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.||.|+.+||..
T Consensus 101 ~~~Ci~Cg~Cv~aCP~~ 117 (183)
T TIGR00403 101 FGVCIFCGNCVEYCPTN 117 (183)
T ss_pred cccccCcCchhhhcCCC
Confidence 45799999999999975
No 118
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=79.96 E-value=0.48 Score=35.14 Aligned_cols=17 Identities=35% Similarity=0.913 Sum_probs=15.1
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|+.+||.-
T Consensus 69 ~~~C~~Cg~C~~~CP~~ 85 (91)
T TIGR02936 69 PGNCIGCGACARVCPKK 85 (91)
T ss_pred CccCcChhhhhhhCCHh
Confidence 46899999999999974
No 119
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=79.56 E-value=0.67 Score=39.57 Aligned_cols=19 Identities=32% Similarity=0.868 Sum_probs=16.6
Q ss_pred cHHHhhhhchhhhcccCcc
Q 026956 188 GMYECILCACCSTSCPSYW 206 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~~ 206 (230)
+...||.||.|+.+||...
T Consensus 36 d~~~Ci~Cg~Cv~aCP~~A 54 (181)
T PRK08222 36 MPSQCIACGACTCACPANA 54 (181)
T ss_pred ChhhCcchhHHHHhCCccc
Confidence 4679999999999999864
No 120
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=79.30 E-value=1.1 Score=43.56 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=23.4
Q ss_pred HHHhhhhchhhhcccCcccCCCCCcCHHHHHHHHHh
Q 026956 189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANSI 224 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~~~~~~FlGPaal~~a~R~ 224 (230)
...||.||.|..+||+. +=|..|.++++.
T Consensus 373 ~~~CI~Cg~C~~vCP~~-------L~P~~l~ra~~~ 401 (448)
T PRK05352 373 ERAMVPIGNYERVMPLD-------ILPTQLLRALIV 401 (448)
T ss_pred CcceeecCcHhhcCCCC-------CCHHHHHHHHHc
Confidence 46899999999999993 457788877664
No 121
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=78.94 E-value=0.54 Score=34.42 Aligned_cols=18 Identities=33% Similarity=0.785 Sum_probs=15.6
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
....||.||.|+.+||+.
T Consensus 6 ~~~~Ci~C~~Cv~~CP~~ 23 (80)
T TIGR03048 6 IYDTCIGCTQCVRACPTD 23 (80)
T ss_pred cCCcCcCcchHHHHCCcc
Confidence 456899999999999964
No 122
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=78.21 E-value=0.27 Score=46.69 Aligned_cols=66 Identities=14% Similarity=0.298 Sum_probs=32.0
Q ss_pred CCcceeeeeechhhHHHHh--hhcccccccCCCCCCCCCCCCCCHHHHHHHhcHHHhhhhchhhhcccC
Q 026956 138 HMFVIKDLVVDMTNFYNQY--KSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPS 204 (230)
Q Consensus 138 ~~pvirDLvVD~~~f~~k~--k~vkp~l~~~~~~~~~~~e~~~~pe~~~~~~~~~~CI~CG~C~saCP~ 204 (230)
+..++++++.+.+.++++. .++.-++-.......+.....+... .....+...|+.||.|..+||.
T Consensus 289 gp~ii~~I~~~L~~~l~~~g~~si~e~iG~~~~~~~~~~~l~~~~~-~~~~~~~~~C~~C~~C~~~Cp~ 356 (420)
T PRK08318 289 GFRIVEDMISGLSHYMDEKGFASLEDMVGLAVPNVTDWEDLDLNYI-VYARIDQDKCIGCGRCYIACED 356 (420)
T ss_pred CchhHHHHHHHHHHHHHHcCcchHHHHhcccccCcCChhhcccccc-eEEEECHHHCCCCCcccccCCC
Confidence 5677888888888887766 3444333211100000000000000 0111344577777777777774
No 123
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=78.18 E-value=0.56 Score=39.08 Aligned_cols=17 Identities=35% Similarity=0.948 Sum_probs=15.0
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.||.|..+||..
T Consensus 57 ~~~Ci~C~~C~~~CP~~ 73 (164)
T PRK05888 57 EERCIACKLCAAICPAD 73 (164)
T ss_pred CccCCcccChHHHcCcc
Confidence 45899999999999965
No 124
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=78.14 E-value=0.78 Score=47.06 Aligned_cols=19 Identities=37% Similarity=1.104 Sum_probs=16.4
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
.+..+||.||+|..+||.-
T Consensus 406 ~~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 406 YNLFDCIECGACAYVCPSN 424 (695)
T ss_pred cChhhccccCcccccCCCC
Confidence 3567899999999999986
No 125
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=77.63 E-value=0.61 Score=44.92 Aligned_cols=19 Identities=32% Similarity=0.747 Sum_probs=16.8
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
.....||.||.|+++||+.
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~ 378 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMN 378 (435)
T ss_pred ccCCcCcCccchhhhCccc
Confidence 4568999999999999985
No 126
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=77.52 E-value=0.67 Score=40.39 Aligned_cols=19 Identities=37% Similarity=1.074 Sum_probs=16.6
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
...+.|+.||.|..+||.-
T Consensus 191 ~~~~~C~~Cg~C~~~CP~~ 209 (220)
T TIGR00384 191 NGVWRCTTCMNCSEVCPKG 209 (220)
T ss_pred CCCccCccccccccccCCC
Confidence 3578999999999999984
No 127
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=77.52 E-value=0.67 Score=36.57 Aligned_cols=20 Identities=30% Similarity=0.718 Sum_probs=16.7
Q ss_pred hcHHHhhhhchhhhcccCcc
Q 026956 187 DGMYECILCACCSTSCPSYW 206 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~~ 206 (230)
.+...||.||.|..+||...
T Consensus 39 i~~~~Ci~C~~C~~~CP~~a 58 (120)
T PRK08348 39 YDVDKCVGCRMCVTVCPAGV 58 (120)
T ss_pred ECcccCcCcccHHHHCCccc
Confidence 44579999999999999753
No 128
>PLN00071 photosystem I subunit VII; Provisional
Probab=77.40 E-value=0.62 Score=34.02 Aligned_cols=17 Identities=35% Similarity=0.919 Sum_probs=14.8
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|+.+||.-
T Consensus 8 ~~~C~~C~~C~~~CP~~ 24 (81)
T PLN00071 8 YDTCIGCTQCVRACPTD 24 (81)
T ss_pred CCcCcChhHHHHHCCcc
Confidence 45899999999999954
No 129
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=77.18 E-value=0.91 Score=40.30 Aligned_cols=19 Identities=32% Similarity=0.821 Sum_probs=16.3
Q ss_pred CcccccCcCCCccCcceEE
Q 026956 93 SLTFRRSCREGICGSCAMN 111 (230)
Q Consensus 93 ~l~fr~gCr~GiCGsCaV~ 111 (230)
++..+-.|+.|+||+|.|-
T Consensus 222 ~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 222 SYERKMCCGVGKCGHCKID 240 (261)
T ss_pred EeccceeccCcCCCCcccC
Confidence 4667778999999999887
No 130
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=76.65 E-value=0.92 Score=38.74 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=16.8
Q ss_pred hcHHHhhhhchhhhcccCcc
Q 026956 187 DGMYECILCACCSTSCPSYW 206 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~~ 206 (230)
.+...||.||.|+-+||...
T Consensus 79 V~~ekCiGC~~C~~aCPfGa 98 (165)
T COG1142 79 VDEEKCIGCKLCVVACPFGA 98 (165)
T ss_pred EchhhccCcchhhhcCCcce
Confidence 34669999999999999764
No 131
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=76.60 E-value=0.75 Score=36.00 Aligned_cols=17 Identities=35% Similarity=0.937 Sum_probs=15.1
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.||.|+.+||..
T Consensus 42 ~~~Ci~C~~C~~~CP~~ 58 (122)
T TIGR01971 42 EEKCIGCTLCAAVCPAD 58 (122)
T ss_pred cCcCcCcchhhhhcCHh
Confidence 47899999999999954
No 132
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=76.57 E-value=0.91 Score=40.35 Aligned_cols=19 Identities=32% Similarity=0.821 Sum_probs=16.3
Q ss_pred CcccccCcCCCccCcceEE
Q 026956 93 SLTFRRSCREGICGSCAMN 111 (230)
Q Consensus 93 ~l~fr~gCr~GiCGsCaV~ 111 (230)
++..+-.|+.|+||+|++.
T Consensus 224 ~~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 224 SYERKMCCGVGKCGHCKID 242 (263)
T ss_pred EecceeEccCcccCCcccC
Confidence 4667778999999999987
No 133
>PRK13669 hypothetical protein; Provisional
Probab=76.56 E-value=2.4 Score=32.07 Aligned_cols=29 Identities=31% Similarity=0.647 Sum_probs=23.5
Q ss_pred cCCCcc-cccCcCCCccCcceE----EeCCeeecc
Q 026956 90 IDPSLT-FRRSCREGICGSCAM----NIDGCNGLA 119 (230)
Q Consensus 90 ~d~~l~-fr~gCr~GiCGsCaV----~ING~~~LA 119 (230)
.||.+. .++||. +.||.|.. .|||+++-|
T Consensus 25 ~dP~~dVie~gCl-s~CG~C~~~~FAlVng~~V~a 58 (78)
T PRK13669 25 KDPNLDVLEYGCL-GYCGICSEGLFALVNGEVVEG 58 (78)
T ss_pred hCCCceEEEcchh-hhCcCcccCceEEECCeEeec
Confidence 478888 778996 68999987 699998754
No 134
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=76.42 E-value=1.5 Score=42.71 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=23.6
Q ss_pred hcHHHhhh--hchhhhcccCcccCCCCCcCHHHHHHHHHhcc
Q 026956 187 DGMYECIL--CACCSTSCPSYWWTSEAYLGPAALLHANSIGL 226 (230)
Q Consensus 187 ~~~~~CI~--CG~C~saCP~~~~~~~~FlGPaal~~a~R~~~ 226 (230)
....+||. ||+|..+||..- -|++.+|+..
T Consensus 410 ~~~~~C~EedCG~CsyVCPski----------pL~q~iR~~k 441 (448)
T PRK05352 410 LGALELDEEDLALCTFVCPGKY----------EYGPILRDGL 441 (448)
T ss_pred cCchhcCccccCCCccCCCCCc----------hHHHHHHHHH
Confidence 67889999 999999999973 3566666543
No 135
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=76.13 E-value=1.6 Score=42.60 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=21.7
Q ss_pred HHHhhhhchhhhcccCcccCCCCCcCHHHHHHHHH
Q 026956 189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANS 223 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~~~~~~FlGPaal~~a~R 223 (230)
...||.||.|..+||+. +=|..|.++++
T Consensus 372 ~~aCI~CG~C~~vCPm~-------L~P~~L~~a~~ 399 (447)
T TIGR01936 372 ERAMIPIGIYERVMPLD-------IPPTLLLKALI 399 (447)
T ss_pred ccceeECChHhhcCCCC-------CCHHHHHHHHH
Confidence 45699999999999995 33777776654
No 136
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=76.02 E-value=0.82 Score=41.19 Aligned_cols=19 Identities=26% Similarity=0.688 Sum_probs=16.4
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
..++.|+.||.|..+||.-
T Consensus 209 ~gv~~C~~Cg~Cs~VCPk~ 227 (250)
T PRK07570 209 EGFGNCTNTGECEAVCPKG 227 (250)
T ss_pred cCcccCcccCccccccCCC
Confidence 3467899999999999984
No 137
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=75.93 E-value=0.76 Score=38.57 Aligned_cols=16 Identities=38% Similarity=1.030 Sum_probs=14.5
Q ss_pred HHhhhhchhhhcccCc
Q 026956 190 YECILCACCSTSCPSY 205 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~ 205 (230)
..|+.||.|..+||.-
T Consensus 99 ~~C~~Cg~C~~~CP~~ 114 (167)
T CHL00014 99 GVCIFCGNCVEYCPTN 114 (167)
T ss_pred CcCcCccchHhhcCcC
Confidence 4699999999999985
No 138
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=75.30 E-value=0.88 Score=40.71 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=15.8
Q ss_pred cHHHhhhhchhhhcccCcc
Q 026956 188 GMYECILCACCSTSCPSYW 206 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~~ 206 (230)
+...||.||.|+.+||.-.
T Consensus 46 ~~~~C~~C~~C~~~Cp~~a 64 (295)
T TIGR02494 46 KENRCLGCGKCVEVCPAGT 64 (295)
T ss_pred ccccCCCCchhhhhCcccc
Confidence 4568999999999999753
No 139
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=74.99 E-value=0.9 Score=41.49 Aligned_cols=19 Identities=32% Similarity=0.749 Sum_probs=16.7
Q ss_pred cHHHhhhhchhhhcccCcc
Q 026956 188 GMYECILCACCSTSCPSYW 206 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~~ 206 (230)
+...||.|+.|+.+||...
T Consensus 245 d~~~Ci~C~~C~~~CP~~a 263 (312)
T PRK14028 245 DHSKCIMCRKCWLYCPDDA 263 (312)
T ss_pred CcccCcCcccccccCChhh
Confidence 5679999999999999764
No 140
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=74.68 E-value=0.9 Score=36.95 Aligned_cols=16 Identities=31% Similarity=0.918 Sum_probs=14.4
Q ss_pred HHhhhhchhhhcccCc
Q 026956 190 YECILCACCSTSCPSY 205 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~ 205 (230)
..|+.||.|+.+||.-
T Consensus 89 ~~C~~Cg~Cv~vCP~~ 104 (133)
T PRK09625 89 SHCKGCGVCVEVCPTN 104 (133)
T ss_pred CcCcChhHHHHHCCcC
Confidence 3699999999999985
No 141
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=74.26 E-value=0.58 Score=41.01 Aligned_cols=18 Identities=28% Similarity=0.881 Sum_probs=15.9
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
+..||.||.|+.+||.-.
T Consensus 52 ~~~Ci~Cg~Cv~aCP~~a 69 (213)
T TIGR00397 52 LAACVRCGLCVEACPYDI 69 (213)
T ss_pred cccccchhHHHHhCCccc
Confidence 479999999999999753
No 142
>PRK13984 putative oxidoreductase; Provisional
Probab=74.26 E-value=1.6 Score=43.22 Aligned_cols=21 Identities=24% Similarity=0.876 Sum_probs=17.6
Q ss_pred HHhcHHHhhhhchhhhcccCc
Q 026956 185 KLDGMYECILCACCSTSCPSY 205 (230)
Q Consensus 185 ~~~~~~~CI~CG~C~saCP~~ 205 (230)
.....+.|+.||.|..+||..
T Consensus 180 ~~~~~~~C~~Cg~C~~~CP~~ 200 (604)
T PRK13984 180 AMQEAARCVECGICTDTCPAH 200 (604)
T ss_pred HHHhhhhhcCCCcccccCCCC
Confidence 345568899999999999985
No 143
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=74.24 E-value=0.8 Score=46.13 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=18.9
Q ss_pred hcHHHhhhhchhhhcccCcccC
Q 026956 187 DGMYECILCACCSTSCPSYWWT 208 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~~~~ 208 (230)
.+...||+||.|+.+|..+..+
T Consensus 613 ~D~~kCI~CgrCv~~C~ev~~~ 634 (652)
T PRK12814 613 FEREKCVDCGICVRTLEEYGAE 634 (652)
T ss_pred eccccccCchHHHHHHHHhccc
Confidence 4688999999999999888654
No 144
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=74.09 E-value=1.3 Score=32.52 Aligned_cols=17 Identities=29% Similarity=0.696 Sum_probs=15.0
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
-..||.||.|..+||.+
T Consensus 7 rd~Cigcg~C~~~aPdv 23 (68)
T COG1141 7 RDTCIGCGACLAVAPDV 23 (68)
T ss_pred hhhccccchhhhcCCcc
Confidence 35899999999999876
No 145
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=73.87 E-value=1 Score=40.54 Aligned_cols=17 Identities=29% Similarity=0.771 Sum_probs=14.9
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
..+|+.||.|..+||.-
T Consensus 241 ~~~C~~Cg~Cv~~CP~~ 257 (271)
T PRK09477 241 SGDCITCGRCIDVCSED 257 (271)
T ss_pred cccCcChhHHHhhcCcc
Confidence 35799999999999974
No 146
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=73.85 E-value=0.9 Score=35.55 Aligned_cols=18 Identities=33% Similarity=0.979 Sum_probs=15.4
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...|+.||.|+.+||.-.
T Consensus 81 ~~~C~~Cg~Cv~~CP~~a 98 (122)
T TIGR01971 81 FGRCIFCGLCEEACPTDA 98 (122)
T ss_pred cccCCCCCchhhhCCCcc
Confidence 457999999999999854
No 147
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=73.80 E-value=1.2 Score=42.04 Aligned_cols=17 Identities=35% Similarity=0.889 Sum_probs=15.4
Q ss_pred cHHHhhhhchhhhcccC
Q 026956 188 GMYECILCACCSTSCPS 204 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~ 204 (230)
....||.||.|..+||+
T Consensus 224 ~~~rCi~Cg~C~~~CPt 240 (344)
T PRK15055 224 YDSRCIACGRCNFVCPT 240 (344)
T ss_pred HHhhCccCccccccCCc
Confidence 35699999999999999
No 148
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=73.79 E-value=1.1 Score=45.92 Aligned_cols=18 Identities=33% Similarity=0.962 Sum_probs=16.2
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
....||.||.|+.+||+.
T Consensus 368 ~e~~CI~CG~Cv~aCP~~ 385 (695)
T PRK05035 368 PEQPCIRCGACADACPAS 385 (695)
T ss_pred chhhcCCcccHHHHCCcc
Confidence 457999999999999985
No 149
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=73.76 E-value=1.2 Score=31.05 Aligned_cols=17 Identities=29% Similarity=1.007 Sum_probs=14.1
Q ss_pred cHHHhhhhchhhhcccC
Q 026956 188 GMYECILCACCSTSCPS 204 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~ 204 (230)
....++.||.|+++||.
T Consensus 50 ~~~~~~~C~~C~~vCP~ 66 (67)
T PF13484_consen 50 SYWDCYGCGICQKVCPF 66 (67)
T ss_pred cCCCccccchhhccCCC
Confidence 34566899999999996
No 150
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=73.75 E-value=1.2 Score=36.24 Aligned_cols=18 Identities=33% Similarity=0.674 Sum_probs=15.7
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...||.||.|+.+||..
T Consensus 57 d~~~Ci~C~~C~~~CP~~ 74 (133)
T PRK09625 57 NNEICINCFNCWVYCPDA 74 (133)
T ss_pred ehhHCcChhhHHHhCCHh
Confidence 457999999999999954
No 151
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=73.75 E-value=1.6 Score=38.41 Aligned_cols=24 Identities=33% Similarity=0.785 Sum_probs=18.5
Q ss_pred cccccCcCCCccCcceEEeCCeeecccc
Q 026956 94 LTFRRSCREGICGSCAMNIDGCNGLACL 121 (230)
Q Consensus 94 l~fr~gCr~GiCGsCaV~ING~~~LAC~ 121 (230)
+.-+-.|+.|+||+|.|. +.++|.
T Consensus 223 ~~~~~~~~~g~c~~c~~~----~~~~~~ 246 (253)
T cd06221 223 LERRMKCGVGKCGHCQIG----PKYVCK 246 (253)
T ss_pred hhhccccCCccccCcccC----CeeEEC
Confidence 555667999999999998 355553
No 152
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=73.57 E-value=1.2 Score=39.83 Aligned_cols=19 Identities=32% Similarity=1.003 Sum_probs=16.5
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
.....|+.||.|..+||.-
T Consensus 200 ~gl~~C~~C~~C~~vCP~~ 218 (244)
T PRK12385 200 NGVWSCTFVGYCSEVCPKH 218 (244)
T ss_pred chhhhCcCcccccccCCCC
Confidence 3567999999999999984
No 153
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=73.49 E-value=0.95 Score=47.10 Aligned_cols=29 Identities=31% Similarity=0.693 Sum_probs=21.8
Q ss_pred cHHHhhhhchhhhcccCcccCCCCCcCHH
Q 026956 188 GMYECILCACCSTSCPSYWWTSEAYLGPA 216 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~~~~~~~FlGPa 216 (230)
+.++|..||.|+.+||+...-...++|=+
T Consensus 190 ~~SSCVsCG~CvtVCP~nALmek~m~g~a 218 (978)
T COG3383 190 NESSCVSCGACVTVCPVNALMEKSMLGEA 218 (978)
T ss_pred ccccccccCccceecchhhhhhhhhhccc
Confidence 36799999999999999755444555543
No 154
>COG1146 Ferredoxin [Energy production and conversion]
Probab=73.46 E-value=1.2 Score=31.71 Aligned_cols=18 Identities=33% Similarity=0.800 Sum_probs=15.1
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...|+.||.|+++||..-
T Consensus 7 ~~~C~~c~~C~~~CP~~~ 24 (68)
T COG1146 7 YDKCIGCGICVEVCPAGV 24 (68)
T ss_pred chhcCCCChheeccChhh
Confidence 345999999999999863
No 155
>PRK06273 ferredoxin; Provisional
Probab=73.43 E-value=1.1 Score=37.87 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=16.1
Q ss_pred cHHHhhhhchhhhcccCcc
Q 026956 188 GMYECILCACCSTSCPSYW 206 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~~ 206 (230)
+...|+.||.|..+||...
T Consensus 47 d~~~CigCg~C~~aCP~~A 65 (165)
T PRK06273 47 FEELCIGCGGCANVCPTKA 65 (165)
T ss_pred CchhCcChhHHHHhcCccc
Confidence 4568999999999999753
No 156
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=73.14 E-value=11 Score=26.40 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=30.7
Q ss_pred ecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeec---cccccccCCCCceEEeeC
Q 026956 72 LKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL---ACLTKISPSGSASTITPL 136 (230)
Q Consensus 72 v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~L---AC~t~v~~~~~~itIEPL 136 (230)
+.+ ++||.++|..++ .++ ..++|.+||+.+- --.+.+.++..+-.+.|.
T Consensus 10 ~~~-~~tv~~ll~~l~--~~~-------------~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~V 61 (64)
T TIGR01683 10 VED-GLTLAALLESLG--LDP-------------RRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFV 61 (64)
T ss_pred cCC-CCcHHHHHHHcC--CCC-------------CeEEEEECCEEcCHHHcCceecCCCCEEEEEEec
Confidence 335 789999999875 221 2369999999764 334556655443334444
No 157
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=73.14 E-value=1.5 Score=45.23 Aligned_cols=22 Identities=23% Similarity=0.631 Sum_probs=17.7
Q ss_pred HHHhcHHHhhhhchhhhcccCc
Q 026956 184 AKLDGMYECILCACCSTSCPSY 205 (230)
Q Consensus 184 ~~~~~~~~CI~CG~C~saCP~~ 205 (230)
+..+....||.||.|..+||+.
T Consensus 359 el~~~~~kCI~CG~Cv~aCP~~ 380 (731)
T cd01916 359 EFQELAAKCTDCGWCTRACPNS 380 (731)
T ss_pred HHHHhhhcCCCCCcccccCCCC
Confidence 3455678899999999999975
No 158
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=72.97 E-value=1.2 Score=32.63 Aligned_cols=18 Identities=33% Similarity=0.801 Sum_probs=15.8
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...|+.||.|..+||.-.
T Consensus 62 ~~~C~~C~~C~~~Cp~~a 79 (99)
T COG1145 62 PDLCVLCGACLKVCPVDA 79 (99)
T ss_pred cccCccccchHhhCCcCC
Confidence 358999999999999975
No 159
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=72.94 E-value=0.97 Score=36.84 Aligned_cols=17 Identities=29% Similarity=0.995 Sum_probs=15.5
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
.+.|..||.|..+||..
T Consensus 45 ~~~C~~Cg~C~~~CP~~ 61 (144)
T TIGR03290 45 LWMCTTCYTCQERCPRD 61 (144)
T ss_pred CCcCcCcCchhhhcCCC
Confidence 56899999999999985
No 160
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=72.85 E-value=1.2 Score=38.15 Aligned_cols=17 Identities=35% Similarity=0.911 Sum_probs=14.8
Q ss_pred HHhhhhchhhhcccCcc
Q 026956 190 YECILCACCSTSCPSYW 206 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~ 206 (230)
..||.|+.|..+||+..
T Consensus 55 ~~CIgC~lCa~iCP~~a 71 (172)
T COG1143 55 DKCIGCGLCANICPANA 71 (172)
T ss_pred cCCcchhHHHhhCCcCc
Confidence 35999999999999863
No 161
>PRK06991 ferredoxin; Provisional
Probab=72.75 E-value=1.4 Score=40.29 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=15.9
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
....|+.||.|+.+||+-
T Consensus 113 ~~~~CigCg~Cv~vCP~~ 130 (270)
T PRK06991 113 LADLCTGCDLCVPPCPVD 130 (270)
T ss_pred CHhhCCCchHHHhhCCcC
Confidence 356899999999999985
No 162
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=72.59 E-value=1.3 Score=37.44 Aligned_cols=18 Identities=44% Similarity=1.027 Sum_probs=15.8
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...||.||.|+.+||..
T Consensus 36 d~~~C~~C~~Cv~~CP~~ 53 (180)
T PRK12387 36 NPQQCIGCAACVNACPSN 53 (180)
T ss_pred ChhhCcChhHHHHhcCcc
Confidence 467999999999999975
No 163
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=72.41 E-value=1.1 Score=46.56 Aligned_cols=22 Identities=23% Similarity=0.579 Sum_probs=18.4
Q ss_pred HHHhcHHHhhhhchhhhcccCc
Q 026956 184 AKLDGMYECILCACCSTSCPSY 205 (230)
Q Consensus 184 ~~~~~~~~CI~CG~C~saCP~~ 205 (230)
+..+....||.||.|+.+||+.
T Consensus 398 El~~eadrCI~CG~Cv~aCP~~ 419 (781)
T PRK00941 398 ELKELAKKCTECGWCVRVCPNE 419 (781)
T ss_pred HHHHhhhhCcCCCCccccCCCC
Confidence 4455678999999999999985
No 164
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=72.34 E-value=1.2 Score=35.04 Aligned_cols=17 Identities=29% Similarity=0.884 Sum_probs=14.8
Q ss_pred HHhhhhchhhhcccCcc
Q 026956 190 YECILCACCSTSCPSYW 206 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~ 206 (230)
..|+.||.|+.+||.-.
T Consensus 73 ~~C~~Cg~Cv~~CP~~A 89 (120)
T PRK08348 73 GRCVFCGQCVDVCPTGA 89 (120)
T ss_pred CcCcChhhhHHhCCcCc
Confidence 47999999999999853
No 165
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=72.21 E-value=1.2 Score=34.74 Aligned_cols=16 Identities=31% Similarity=0.879 Sum_probs=14.4
Q ss_pred HHhhhhchhhhcccCc
Q 026956 190 YECILCACCSTSCPSY 205 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~ 205 (230)
..|+.||.|+.+||.-
T Consensus 81 ~~C~~Cg~Cv~~CP~~ 96 (105)
T PRK09624 81 DYCKGCGICANECPTK 96 (105)
T ss_pred hhCCCcCchhhhcCcC
Confidence 3799999999999975
No 166
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=71.87 E-value=1.1 Score=37.32 Aligned_cols=17 Identities=35% Similarity=1.120 Sum_probs=15.0
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|+.+||.-
T Consensus 96 ~~~C~~Cg~Cv~~CP~~ 112 (164)
T PRK05888 96 FGRCIFCGFCEEACPTD 112 (164)
T ss_pred CCcCcccCcchhhcCcC
Confidence 35899999999999974
No 167
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=71.81 E-value=2.3 Score=30.99 Aligned_cols=14 Identities=14% Similarity=0.596 Sum_probs=11.6
Q ss_pred EEEEEeeCCCCCCC
Q 026956 49 KFQIYRWNPDSPSK 62 (230)
Q Consensus 49 ~lkI~Rfdp~~d~~ 62 (230)
+||||||||++..-
T Consensus 40 ~iKIfkyd~~tNei 53 (63)
T PF14157_consen 40 QIKIFKYDEDTNEI 53 (63)
T ss_dssp EEEEEEEETTTTEE
T ss_pred eEEEEEeCCCCCeE
Confidence 68999999997643
No 168
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=71.72 E-value=1.1 Score=32.21 Aligned_cols=18 Identities=33% Similarity=0.676 Sum_probs=15.4
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...|+.||.|..+||...
T Consensus 24 ~~~C~~C~~C~~~Cp~~a 41 (78)
T TIGR02179 24 KEKCIKCKNCWLYCPEGA 41 (78)
T ss_pred CCcCcChhHHHhhcCccc
Confidence 458999999999999653
No 169
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=71.52 E-value=3.7 Score=30.95 Aligned_cols=28 Identities=32% Similarity=0.674 Sum_probs=21.4
Q ss_pred CCCcc-cccCcCCCccCcceE----EeCCeeecc
Q 026956 91 DPSLT-FRRSCREGICGSCAM----NIDGCNGLA 119 (230)
Q Consensus 91 d~~l~-fr~gCr~GiCGsCaV----~ING~~~LA 119 (230)
+|.+. .++||. |.||.|.. .|||+.+-|
T Consensus 26 ~p~~~Vie~gCl-~~Cg~C~~~pFAlVnG~~V~A 58 (78)
T PF07293_consen 26 DPDIDVIEYGCL-SYCGPCAKKPFALVNGEIVAA 58 (78)
T ss_pred CCCccEEEcChh-hhCcCCCCCccEEECCEEEec
Confidence 45555 468996 78999987 699998755
No 170
>PRK06273 ferredoxin; Provisional
Probab=71.43 E-value=1.1 Score=37.93 Aligned_cols=18 Identities=28% Similarity=0.940 Sum_probs=15.7
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...|+.||.|..+||...
T Consensus 90 ~~kCi~Cg~C~~aCP~~A 107 (165)
T PRK06273 90 YEKCVYCLYCHDFCPVFA 107 (165)
T ss_pred cccCcCCCCcchhCCHhh
Confidence 358999999999999974
No 171
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=71.07 E-value=1 Score=35.13 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=15.4
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...||.||.|.-+||..
T Consensus 59 d~e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 59 DYAGCLECGTCRILGLGS 76 (95)
T ss_pred cCCCCCcchhhhhhcCCC
Confidence 356999999999999765
No 172
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=70.97 E-value=1.7 Score=41.13 Aligned_cols=18 Identities=39% Similarity=1.130 Sum_probs=16.0
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
....|+.||.|..+||+.
T Consensus 305 g~~~CvgCGrC~~~CP~~ 322 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEY 322 (344)
T ss_pred chhhCcCcCccccccCCC
Confidence 557899999999999985
No 173
>PRK01777 hypothetical protein; Validated
Probab=70.68 E-value=37 Score=26.24 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=40.2
Q ss_pred eEEEEEEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhh-ccCCCcccccCcCCCccCcceEEeCCeeecccccccc
Q 026956 47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKS-EIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS 125 (230)
Q Consensus 47 ~v~lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~-~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~ 125 (230)
++++.|.=-.|+ .+...++++.+ |.||-|+|...+- ..-|.+.+.. ..|.|||+.+-. .+.+.
T Consensus 3 ~i~v~V~ya~~~-----~~~~~~l~vp~-GtTv~dal~~sgi~~~~pei~~~~---------~~vgI~Gk~v~~-d~~L~ 66 (95)
T PRK01777 3 KIRVEVVYALPE-----RQYLQRLTLQE-GATVEEAIRASGLLELRTDIDLAK---------NKVGIYSRPAKL-TDVLR 66 (95)
T ss_pred eeEEEEEEECCC-----ceEEEEEEcCC-CCcHHHHHHHcCCCccCccccccc---------ceEEEeCeECCC-CCcCC
Confidence 455555544443 24557778777 9999999998652 1111222211 368899998853 33444
Q ss_pred CCCCceEE
Q 026956 126 PSGSASTI 133 (230)
Q Consensus 126 ~~~~~itI 133 (230)
+ |+.+.|
T Consensus 67 d-GDRVeI 73 (95)
T PRK01777 67 D-GDRVEI 73 (95)
T ss_pred C-CCEEEE
Confidence 4 343333
No 174
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=70.52 E-value=1.7 Score=40.45 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.6
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...|+.||.|+.+||...
T Consensus 52 ~~~C~~Cg~C~~vCP~~~ 69 (341)
T PRK09326 52 PNVCEGCLTCSRICPVVD 69 (341)
T ss_pred cCcCcCcCchhhhCCCCc
Confidence 358999999999999854
No 175
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=70.51 E-value=0.97 Score=40.72 Aligned_cols=18 Identities=33% Similarity=0.874 Sum_probs=15.7
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...||.||.|+.+||.-.
T Consensus 58 ~~~Ci~Cg~Cv~aCP~~a 75 (254)
T PRK09476 58 LSACIRCGLCVQACPYDT 75 (254)
T ss_pred hhhCcCchHHHHhCCccc
Confidence 489999999999999653
No 176
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=70.11 E-value=26 Score=29.90 Aligned_cols=64 Identities=22% Similarity=0.417 Sum_probs=43.2
Q ss_pred EEEEeeCCCCCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcC-CCccCcceEEeCC--------------
Q 026956 50 FQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG-------------- 114 (230)
Q Consensus 50 lkI~Rfdp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr-~GiCGsCaV~ING-------------- 114 (230)
|+|+=-|++ ++-.++... . |+||||++....-.+++ .|. .--|-.|-|.|.-
T Consensus 44 i~Itfv~~d----G~~~~i~g~--v-GdtlLd~ah~n~idleG------ACEgslACSTCHViv~~~~yekl~ep~DeE~ 110 (159)
T KOG3309|consen 44 IKITFVDPD----GEEIKIKGK--V-GDTLLDAAHENNLDLEG------ACEGSLACSTCHVIVDEEYYEKLPEPEDEEN 110 (159)
T ss_pred EEEEEECCC----CCEEEeeee--c-chHHHHHHHHcCCCccc------cccccccccceEEEEcHHHHhcCCCCcchHH
Confidence 445444554 344555555 3 88999999986534443 455 4568899998874
Q ss_pred -----------eeeccccccccC
Q 026956 115 -----------CNGLACLTKISP 126 (230)
Q Consensus 115 -----------~~~LAC~t~v~~ 126 (230)
..+|-|+..+..
T Consensus 111 DmLDlA~gLt~tSRLGCQI~l~k 133 (159)
T KOG3309|consen 111 DMLDLAFGLTETSRLGCQIVLTK 133 (159)
T ss_pred HHHHhhhccccccccceEEEecc
Confidence 578999888874
No 177
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=70.00 E-value=13 Score=26.13 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=28.3
Q ss_pred EEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecc
Q 026956 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA 119 (230)
Q Consensus 69 ~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LA 119 (230)
++...+ +.||-++|..+.... |.+. .=..|.|.|||+.+..
T Consensus 15 ~~~~~~-~~tv~~ll~~l~~~~-p~~~--------~~~~~~v~vN~~~v~~ 55 (77)
T PF02597_consen 15 EIEVPE-GSTVRDLLEALAERY-PELA--------LRDRVAVAVNGEIVPD 55 (77)
T ss_dssp EEEESS-TSBHHHHHHHHCHHT-GGGH--------TTTTEEEEETTEEEGG
T ss_pred EEecCC-CCcHHHHHHHHHhhc-cccc--------cCccEEEEECCEEcCC
Confidence 344445 789999999987443 2232 1134899999998877
No 178
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=69.84 E-value=1.3 Score=38.86 Aligned_cols=18 Identities=28% Similarity=0.791 Sum_probs=16.1
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
....|..||.|..+||..
T Consensus 196 ~i~~C~~Cg~C~~~CP~g 213 (232)
T PRK05950 196 GVFRCHTIMNCVEVCPKG 213 (232)
T ss_pred ccccCcCcCCcCccccCC
Confidence 468999999999999984
No 179
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=69.83 E-value=1.7 Score=45.14 Aligned_cols=24 Identities=25% Similarity=0.731 Sum_probs=19.6
Q ss_pred HHHHHhcHHHhhhhchhhhcccCc
Q 026956 182 DRAKLDGMYECILCACCSTSCPSY 205 (230)
Q Consensus 182 ~~~~~~~~~~CI~CG~C~saCP~~ 205 (230)
+-+..+....||.||.|..+||+.
T Consensus 391 ~eeLl~~~~kCI~CG~Cv~aCP~~ 414 (784)
T TIGR00314 391 DEELMELANKCTQCGNCVRTCPNS 414 (784)
T ss_pred HHHHhhhcccCCCcccchhhCCCC
Confidence 334556688999999999999986
No 180
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=69.08 E-value=1.8 Score=38.69 Aligned_cols=18 Identities=33% Similarity=0.791 Sum_probs=15.5
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...|+.||.|..+||.-.
T Consensus 81 ~~~C~~Cg~C~~~CP~~A 98 (295)
T TIGR02494 81 REKCTHCGKCTEACPSGA 98 (295)
T ss_pred hhhcCchhHhhccCcHhH
Confidence 458999999999999753
No 181
>PRK06437 hypothetical protein; Provisional
Probab=68.95 E-value=14 Score=26.39 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=24.8
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeec
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL 118 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~L 118 (230)
+++++ ++ ++||.++|..++ +++ . ..++.+||+.+.
T Consensus 13 ~~~~i--~~-~~tv~dLL~~Lg--i~~----~---------~vaV~vNg~iv~ 47 (67)
T PRK06437 13 KTIEI--DH-ELTVNDIIKDLG--LDE----E---------EYVVIVNGSPVL 47 (67)
T ss_pred eEEEc--CC-CCcHHHHHHHcC--CCC----c---------cEEEEECCEECC
Confidence 44544 45 789999999875 221 1 268999999886
No 182
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=68.65 E-value=1.9 Score=33.61 Aligned_cols=18 Identities=28% Similarity=0.752 Sum_probs=15.7
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...|+.|+.|+.+||..
T Consensus 49 d~~~Ci~C~~C~~~CP~~ 66 (105)
T PRK09624 49 NRDKCVRCYLCYIYCPEP 66 (105)
T ss_pred ChhHCcChhhHHhhCCHh
Confidence 456899999999999965
No 183
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=68.37 E-value=1.6 Score=47.22 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=22.6
Q ss_pred cHHHhhhhchhhhcccCcccCCCCCcCHHHHH
Q 026956 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALL 219 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~~~~~~~FlGPaal~ 219 (230)
+...||.||.|+.+||..... ..+++|..+.
T Consensus 681 ~~~~Ci~Cg~C~~vCP~~ai~-~~~~~~~~~~ 711 (1165)
T TIGR02176 681 VPDNCIQCNQCAFVCPHAAIR-PKLADEEELE 711 (1165)
T ss_pred ccccCCCccchHHhcChhhcc-ccccchhhhh
Confidence 456899999999999987644 3455555443
No 184
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=68.17 E-value=1.7 Score=41.65 Aligned_cols=18 Identities=33% Similarity=0.892 Sum_probs=16.3
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
.++||.||-|.+.||..-
T Consensus 350 as~CieCgqCl~~CPq~l 367 (391)
T COG1453 350 ASDCIECGQCLEKCPQHL 367 (391)
T ss_pred ccccchhhhhhhcCCCcC
Confidence 678999999999999973
No 185
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=68.15 E-value=1.6 Score=38.99 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=15.0
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
..+|+.||.|..+||.-
T Consensus 233 ~~~C~~Cg~Cv~~CP~~ 249 (255)
T TIGR02163 233 SGDCTLCGRCIDVCHED 249 (255)
T ss_pred cccccchhHHHHhCCcc
Confidence 45799999999999985
No 186
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=68.10 E-value=2.6 Score=41.12 Aligned_cols=31 Identities=23% Similarity=0.129 Sum_probs=23.5
Q ss_pred hcHHHhhh--hchhhhcccCcccCCCCCcCHHHHHHHHHhccc
Q 026956 187 DGMYECIL--CACCSTSCPSYWWTSEAYLGPAALLHANSIGLS 227 (230)
Q Consensus 187 ~~~~~CI~--CG~C~saCP~~~~~~~~FlGPaal~~a~R~~~~ 227 (230)
....+||. ||+|..+||.-- -|++..|..+|
T Consensus 409 lg~~ecieedCG~CsyVCPSki----------~l~q~iR~~l~ 441 (447)
T TIGR01936 409 LGALEVDEEDFALCTFVDPSKY----------EYGSIVRESLD 441 (447)
T ss_pred CCCcccCccccccCceECCCCc----------hHHHHHHHHHH
Confidence 45679999 999999999863 25566665554
No 187
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=67.79 E-value=15 Score=25.65 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=31.7
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecc---ccccccCCCCceEEeeC
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA---CLTKISPSGSASTITPL 136 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LA---C~t~v~~~~~~itIEPL 136 (230)
+.++++ + ++||.++|..+. .+ . ..++|.|||+.+-- ..+.+.++.++--|.|.
T Consensus 7 ~~~~~~--~-~~tv~~ll~~l~--~~------~-------~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~v 62 (65)
T cd00565 7 EPREVE--E-GATLAELLEELG--LD------P-------RGVAVALNGEIVPRSEWASTPLQDGDRIEIVTAV 62 (65)
T ss_pred eEEEcC--C-CCCHHHHHHHcC--CC------C-------CcEEEEECCEEcCHHHcCceecCCCCEEEEEEec
Confidence 344444 4 789999999875 12 1 23789999987633 22555554433334444
No 188
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=67.53 E-value=1.7 Score=38.07 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=15.0
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|..+||.-
T Consensus 174 ~~~C~gCG~C~~~CP~~ 190 (213)
T TIGR00397 174 SAKCTGCGTCEKHCVLS 190 (213)
T ss_pred cccCCCcchhhHhCCCC
Confidence 45899999999999964
No 189
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=67.46 E-value=2.3 Score=38.23 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=15.9
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
....|+.||.|..+||..
T Consensus 207 g~~~C~~Cg~C~~vCPkg 224 (249)
T PRK08640 207 GIADCGNAQNCVRVCPKG 224 (249)
T ss_pred CeeCCcCcCcccccCCCC
Confidence 358999999999999974
No 190
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=67.07 E-value=2.3 Score=44.53 Aligned_cols=23 Identities=26% Similarity=0.742 Sum_probs=18.9
Q ss_pred HHhhhhchhhhcccCcccCCCCC
Q 026956 190 YECILCACCSTSCPSYWWTSEAY 212 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~~~~~~F 212 (230)
..|+.||-|+++||+......+|
T Consensus 204 ~~C~~CG~Cv~VCPvGAL~~k~~ 226 (819)
T PRK08493 204 LDCSFCGECIAVCPVGALSSSDF 226 (819)
T ss_pred ccccccCcHHHhCCCCccccCcc
Confidence 59999999999999986654444
No 191
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=66.52 E-value=2 Score=42.78 Aligned_cols=15 Identities=40% Similarity=1.220 Sum_probs=14.4
Q ss_pred HhhhhchhhhcccCc
Q 026956 191 ECILCACCSTSCPSY 205 (230)
Q Consensus 191 ~CI~CG~C~saCP~~ 205 (230)
.||.||.|..+||+.
T Consensus 366 sCi~C~~C~d~CP~~ 380 (529)
T COG4656 366 SCIRCSLCADACPVN 380 (529)
T ss_pred ccccHHHHHHhCccc
Confidence 899999999999996
No 192
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=66.41 E-value=1.8 Score=33.65 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=16.1
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
.+...||.||.|+.+||..
T Consensus 48 i~~~~Ci~C~~C~~~CP~~ 66 (105)
T PRK09623 48 VDESKCVKCYICWKFCPEP 66 (105)
T ss_pred ECcccCccccchhhhCCHh
Confidence 3456899999999999974
No 193
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=66.37 E-value=1.7 Score=37.06 Aligned_cols=16 Identities=38% Similarity=1.063 Sum_probs=14.6
Q ss_pred HHhhhhchhhhcccCc
Q 026956 190 YECILCACCSTSCPSY 205 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~ 205 (230)
..||.||.|..+||.-
T Consensus 73 ~~C~~Cg~C~~~CPt~ 88 (181)
T PRK08222 73 GRCIYCGRCEEVCPTR 88 (181)
T ss_pred CcCcCCCCcccccCcC
Confidence 4899999999999975
No 194
>PRK06991 ferredoxin; Provisional
Probab=66.25 E-value=1.6 Score=39.77 Aligned_cols=18 Identities=33% Similarity=0.706 Sum_probs=15.4
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...||.||.|+.+||+-.
T Consensus 84 ~~~CigCg~Cv~aCP~~A 101 (270)
T PRK06991 84 EQLCIGCTLCMQACPVDA 101 (270)
T ss_pred cccCCCCcHHHHhCCHhh
Confidence 468999999999999653
No 195
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=65.81 E-value=1.8 Score=41.74 Aligned_cols=18 Identities=50% Similarity=1.342 Sum_probs=15.9
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...|+.||.|..+||.-
T Consensus 400 ~~~~C~~Cg~C~~vCP~~ 417 (435)
T TIGR01945 400 NLMDCIECGCCSYVCPSN 417 (435)
T ss_pred CCCcCCcCCCcccccCCC
Confidence 456899999999999985
No 196
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=65.74 E-value=8.5 Score=28.06 Aligned_cols=60 Identities=17% Similarity=0.386 Sum_probs=33.7
Q ss_pred EEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeeccccccccCCCCceEEeeC
Q 026956 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPL 136 (230)
Q Consensus 67 ~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~~~~~~itIEPL 136 (230)
.-++++.+ +.||-++|..+.... |.+. . +...+.+.+||+.+- =.+.+.++.++.-+-|.
T Consensus 20 ~~~~~~~~-~~tv~~L~~~l~~~~-p~l~--~-----~~~~~~vavN~~~v~-~~~~l~dgDeVai~Ppv 79 (82)
T PLN02799 20 DMTLELPA-GSTTADCLAELVAKF-PSLE--E-----VRSCCVLALNEEYTT-ESAALKDGDELAIIPPI 79 (82)
T ss_pred eEEEECCC-CCcHHHHHHHHHHHC-hhHH--H-----HhhCcEEEECCEEcC-CCcCcCCCCEEEEeCCC
Confidence 34445545 789999988886433 3332 1 122478999999862 23344444333334443
No 197
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=65.70 E-value=3.1 Score=37.14 Aligned_cols=18 Identities=22% Similarity=0.671 Sum_probs=16.3
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
.++.|..||.|..+||..
T Consensus 199 gl~~C~~C~~C~~vCPkg 216 (235)
T PRK12575 199 RLFRCRTIMNCVDVCPKG 216 (235)
T ss_pred CcccccCcchhccccCCC
Confidence 478999999999999984
No 198
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=65.44 E-value=1.8 Score=39.46 Aligned_cols=18 Identities=33% Similarity=0.982 Sum_probs=15.9
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
....|..||.|..+||..
T Consensus 204 ~i~~C~~Cg~C~~~CP~~ 221 (279)
T PRK12576 204 SSWRCTYCYSCSNVCPRD 221 (279)
T ss_pred cCCcccCcccchhhCCCC
Confidence 467999999999999974
No 199
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=65.23 E-value=2.6 Score=37.98 Aligned_cols=17 Identities=24% Similarity=0.575 Sum_probs=15.2
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|.++||.-
T Consensus 183 ~d~C~gCG~C~~aCP~~ 199 (254)
T PRK09476 183 SDACTGCGKCEKACVLE 199 (254)
T ss_pred HHHCcCcChhhHhcCCC
Confidence 45899999999999985
No 200
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=65.22 E-value=2 Score=36.37 Aligned_cols=17 Identities=35% Similarity=1.087 Sum_probs=14.9
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.||.|..+||.-
T Consensus 72 ~~~C~~Cg~C~~vCP~~ 88 (180)
T PRK12387 72 LGRCIFCGRCEEVCPTA 88 (180)
T ss_pred cccCcCccchhhhcCcC
Confidence 35899999999999975
No 201
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=65.07 E-value=2.2 Score=33.14 Aligned_cols=16 Identities=31% Similarity=0.879 Sum_probs=14.3
Q ss_pred HHhhhhchhhhcccCc
Q 026956 190 YECILCACCSTSCPSY 205 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~ 205 (230)
..|+.||.|..+||.-
T Consensus 81 ~~C~~Cg~Cv~~CP~~ 96 (105)
T PRK09623 81 DYCKGCGICANECPTK 96 (105)
T ss_pred hhCcCcchhhhhcCcC
Confidence 4799999999999974
No 202
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=65.05 E-value=1.8 Score=37.34 Aligned_cols=18 Identities=33% Similarity=0.791 Sum_probs=15.1
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...||.||.|+.+||.-
T Consensus 112 d~~~Ci~Cg~Cv~aCp~~ 129 (191)
T PRK05113 112 DEDNCIGCTKCIQACPVD 129 (191)
T ss_pred eCCcCCCCChhhhhCCHh
Confidence 346899999999999954
No 203
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=64.95 E-value=2.5 Score=39.86 Aligned_cols=17 Identities=41% Similarity=1.050 Sum_probs=15.6
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.||.|..+||.-
T Consensus 219 ~~rCi~C~~C~~~CPtC 235 (334)
T TIGR02910 219 DSRCIACGRCNTVCPTC 235 (334)
T ss_pred HhhCCcCccccccCCce
Confidence 67999999999999985
No 204
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=63.10 E-value=2.8 Score=39.85 Aligned_cols=17 Identities=35% Similarity=0.856 Sum_probs=15.5
Q ss_pred cHHHhhhhchhhhcccC
Q 026956 188 GMYECILCACCSTSCPS 204 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~ 204 (230)
+...|+.||.|+.+||.
T Consensus 375 ~~~~C~~Cg~C~~~CP~ 391 (420)
T PRK08318 375 IEEECVGCNLCAHVCPV 391 (420)
T ss_pred chhhCcccchHHhhCCC
Confidence 45789999999999998
No 205
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=62.82 E-value=19 Score=25.54 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=33.9
Q ss_pred EEEeecCCChhHHHHHHHhhhccCCCc--ccccCcCCCccCcceEEeCCeeeccccccccCCCCceE-EeeC
Q 026956 68 FEINLKECGPMVLDALIKIKSEIDPSL--TFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPL 136 (230)
Q Consensus 68 y~v~v~~~~~TvLdaL~~i~~~~d~~l--~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~~~~~~it-IEPL 136 (230)
.++++++ +.||-++|+.+.... |.+ ..+ -.+.|.|||+.+. =.+.+.++ +++. +-|+
T Consensus 18 ~~~~~~~-~~tv~~ll~~l~~~~-~~~~~~~~--------~~~~v~vNg~~v~-~~~~l~~g-D~v~i~ppv 77 (80)
T cd00754 18 EELELPE-GATVGELLDALEARY-PGLLEELL--------ARVRIAVNGEYVR-LDTPLKDG-DEVAIIPPV 77 (80)
T ss_pred EEEECCC-CCcHHHHHHHHHHHC-chHHHhhh--------hcEEEEECCeEcC-CCcccCCC-CEEEEeCCC
Confidence 4556655 789999999986432 211 111 1368999999886 23444444 4444 4443
No 206
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=62.80 E-value=2.1 Score=32.90 Aligned_cols=17 Identities=35% Similarity=0.936 Sum_probs=14.7
Q ss_pred HHhhhhchhhhcccCcc
Q 026956 190 YECILCACCSTSCPSYW 206 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~ 206 (230)
..|+.||.|..+||...
T Consensus 53 ~~C~~C~~C~~~CP~~A 69 (103)
T PRK09626 53 ESCIGCRECELHCPDFA 69 (103)
T ss_pred ccCCCcCcchhhCChhh
Confidence 47999999999999753
No 207
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=62.75 E-value=2 Score=39.35 Aligned_cols=18 Identities=33% Similarity=0.816 Sum_probs=13.6
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...|+.||.|+.+||.-
T Consensus 199 d~~~C~~Cg~Cv~~CP~~ 216 (314)
T TIGR02912 199 DHSKCIGCGECVLKCPTG 216 (314)
T ss_pred CCCcCcCcchhhhhCCHh
Confidence 345788888888888864
No 208
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=62.45 E-value=5.3 Score=38.50 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=15.3
Q ss_pred cHHHhhhhchhhhcccC
Q 026956 188 GMYECILCACCSTSCPS 204 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~ 204 (230)
-...|+.||.|+..||.
T Consensus 65 ~a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 65 LANLCHNCGACLHACQY 81 (389)
T ss_pred HHHhCcCcccccccCcC
Confidence 35689999999999999
No 209
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=62.32 E-value=3.8 Score=38.09 Aligned_cols=17 Identities=29% Similarity=0.985 Sum_probs=15.6
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
.+.|..||.|..+||..
T Consensus 208 iw~C~~C~~C~~~CPk~ 224 (329)
T PRK12577 208 VWGCTRCYYCNSVCPME 224 (329)
T ss_pred cccCcChhhhhhhCCCC
Confidence 68999999999999984
No 210
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=62.28 E-value=1.1 Score=34.91 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=15.1
Q ss_pred hcHHHhhhhchhhhcccC
Q 026956 187 DGMYECILCACCSTSCPS 204 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~ 204 (230)
.++..|-.||.|..+||+
T Consensus 63 idYdyCKGCGICa~vCP~ 80 (91)
T COG1144 63 IDYDYCKGCGICANVCPV 80 (91)
T ss_pred eEcccccCceechhhCCh
Confidence 457789999999999987
No 211
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=62.21 E-value=2.1 Score=39.19 Aligned_cols=17 Identities=29% Similarity=0.808 Sum_probs=14.9
Q ss_pred cHHHhhhhchhhhcccC
Q 026956 188 GMYECILCACCSTSCPS 204 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~ 204 (230)
+...||.||.|+++||.
T Consensus 167 d~~~C~~Cg~C~~~Cp~ 183 (314)
T TIGR02912 167 DADRCIGCGACVKVCKK 183 (314)
T ss_pred eCccCCcchHHHHhcCh
Confidence 35679999999999996
No 212
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=62.09 E-value=2.7 Score=34.36 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=14.5
Q ss_pred HHhhhhchhhhcccCc
Q 026956 190 YECILCACCSTSCPSY 205 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~ 205 (230)
..|+.||.|+.+||.-
T Consensus 45 ~~C~~Cg~Cv~~CP~~ 60 (132)
T TIGR02060 45 DMCWECYSCVKACPQG 60 (132)
T ss_pred hhCccHHHHHHhCCcC
Confidence 4899999999999974
No 213
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=61.93 E-value=2.7 Score=37.87 Aligned_cols=18 Identities=28% Similarity=0.700 Sum_probs=15.7
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...|+.||.|..+||+.
T Consensus 206 d~~~C~~C~~C~~~CP~~ 223 (271)
T PRK09477 206 DRQKCTRCMDCFHVCPEP 223 (271)
T ss_pred CcccCcccCCcCCcCCCc
Confidence 456899999999999975
No 214
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=61.93 E-value=1.8 Score=33.62 Aligned_cols=18 Identities=33% Similarity=0.743 Sum_probs=14.3
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...||.||.|..+||...
T Consensus 39 ~~~CigC~~C~~aCP~~a 56 (98)
T PF13247_consen 39 EDKCIGCGYCVEACPYGA 56 (98)
T ss_dssp TTTCCTHHHHHHH-TTS-
T ss_pred hhhccCchhhhhhhccCc
Confidence 458999999999999863
No 215
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=61.05 E-value=2.8 Score=40.67 Aligned_cols=17 Identities=35% Similarity=0.854 Sum_probs=15.4
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|..||.|..+||+.
T Consensus 342 ~~~C~~Cg~C~~vCP~g 358 (432)
T TIGR00273 342 PYLSSLCGACREVCPVK 358 (432)
T ss_pred CccchhhhhhhccCCCC
Confidence 46899999999999995
No 216
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=60.78 E-value=2.8 Score=44.86 Aligned_cols=18 Identities=28% Similarity=0.539 Sum_probs=15.7
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
-..||.||.|..+||+-.
T Consensus 925 ~~~C~~CG~C~~~CP~~~ 942 (1019)
T PRK09853 925 DAMCNECGNCAQFCPWNG 942 (1019)
T ss_pred CccCccccchhhhCCCCC
Confidence 478999999999999953
No 217
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=60.77 E-value=3.3 Score=39.92 Aligned_cols=19 Identities=26% Similarity=0.730 Sum_probs=15.9
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
.+...|+.||.|+.+||.-
T Consensus 327 Id~~~Ci~CGaCV~aCP~~ 345 (391)
T TIGR03287 327 LNTEDCFGCGYCAEICPGG 345 (391)
T ss_pred eChHhCcChHHHHhhCCcc
Confidence 3467899999999999974
No 218
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=60.75 E-value=2.7 Score=39.60 Aligned_cols=18 Identities=39% Similarity=1.100 Sum_probs=16.2
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
....|+.||.|..+||+.
T Consensus 299 G~~~CvgCGrC~~~CP~~ 316 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEY 316 (334)
T ss_pred CccccCCcCchhhhCCCC
Confidence 467899999999999996
No 219
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=60.70 E-value=2.8 Score=39.34 Aligned_cols=17 Identities=41% Similarity=1.087 Sum_probs=15.4
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
+..|+.||.|..+||+.
T Consensus 72 ~~~C~~C~~C~~~CP~~ 88 (407)
T PRK11274 72 LDRCLTCRNCETTCPSG 88 (407)
T ss_pred cccCccccchhhhCCCC
Confidence 57999999999999984
No 220
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=60.27 E-value=11 Score=36.05 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=28.4
Q ss_pred CHHHHHHHhcHHHhhhhchhhhcccCcccCCCCC--cCHHHHHHHHHh
Q 026956 179 SKKDRAKLDGMYECILCACCSTSCPSYWWTSEAY--LGPAALLHANSI 224 (230)
Q Consensus 179 ~pe~~~~~~~~~~CI~CG~C~saCP~~~~~~~~F--lGPaal~~a~R~ 224 (230)
++.+...+ ...|-.||.|+.+||...- -+| --|..++++...
T Consensus 39 ~~~d~~~l--a~lChnC~~C~~~CPy~pP--Hef~v~~p~lma~~R~~ 82 (372)
T TIGR02484 39 TRGDLRHL--AHLCHDCQSCWHDCQYAPP--HAFAINLPATLADVRRA 82 (372)
T ss_pred CHHHHHHH--HHHCcCcccccccCcCCCC--ccccCCHHHHHHHHHHH
Confidence 44554443 7889999999999998642 234 457777765443
No 221
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=60.16 E-value=2.7 Score=39.12 Aligned_cols=18 Identities=33% Similarity=0.816 Sum_probs=16.2
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
....|+.||.|..+||+.
T Consensus 52 ~~~~C~~C~~C~~~CP~~ 69 (396)
T PRK11168 52 SLKYCSNCKRCEVACPSG 69 (396)
T ss_pred CCCcCcCcCccCcccCCC
Confidence 367999999999999985
No 222
>PRK08764 ferredoxin; Provisional
Probab=60.15 E-value=2.9 Score=33.91 Aligned_cols=16 Identities=38% Similarity=0.978 Sum_probs=14.5
Q ss_pred HHhhhhchhhhcccCc
Q 026956 190 YECILCACCSTSCPSY 205 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~ 205 (230)
..||.||.|+.+||..
T Consensus 85 ~~Ci~C~~Cv~aCp~~ 100 (135)
T PRK08764 85 ADCIGCTKCIQACPVD 100 (135)
T ss_pred ccCcCcchHHHhCChh
Confidence 5899999999999964
No 223
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=59.83 E-value=2.6 Score=32.39 Aligned_cols=18 Identities=33% Similarity=0.982 Sum_probs=15.3
Q ss_pred HHhhhhchhhhcccCccc
Q 026956 190 YECILCACCSTSCPSYWW 207 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~~ 207 (230)
..|+.||.|..+||....
T Consensus 66 ~~C~~Cg~C~~~CP~~Ai 83 (101)
T TIGR00402 66 AECDFCGKCAEACPTNAF 83 (101)
T ss_pred ccCcCccChhhHCCcccc
Confidence 379999999999998643
No 224
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=59.52 E-value=2.9 Score=39.27 Aligned_cols=20 Identities=35% Similarity=0.811 Sum_probs=16.9
Q ss_pred hcHHHhhhhchhhhcccCcc
Q 026956 187 DGMYECILCACCSTSCPSYW 206 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~~ 206 (230)
.+...||.||.|..+||...
T Consensus 211 id~~~Ci~Cg~Ci~~CP~~a 230 (341)
T TIGR02066 211 VDVEKCIYCGNCYTMCPAMP 230 (341)
T ss_pred eccccCCcCCchHHhCchhh
Confidence 44679999999999999853
No 225
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=59.47 E-value=3.1 Score=39.52 Aligned_cols=16 Identities=38% Similarity=0.891 Sum_probs=14.9
Q ss_pred HhhhhchhhhcccCcc
Q 026956 191 ECILCACCSTSCPSYW 206 (230)
Q Consensus 191 ~CI~CG~C~saCP~~~ 206 (230)
+||.||.|.++|+...
T Consensus 246 ~CI~C~~CidaCd~~~ 261 (386)
T COG0348 246 ECIGCGRCIDACDDDM 261 (386)
T ss_pred ccccHhhHhhhCCHHh
Confidence 7999999999999875
No 226
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=59.46 E-value=2.6 Score=30.26 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=14.1
Q ss_pred HHhhhhchhhhcccCc
Q 026956 190 YECILCACCSTSCPSY 205 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~ 205 (230)
..|+.||.|+.+||.-
T Consensus 55 ~~C~~C~~C~~~CP~~ 70 (78)
T TIGR02179 55 DYCKGCGICANVCPVK 70 (78)
T ss_pred ccCcCccchhhhCCcc
Confidence 3799999999999974
No 227
>PRK10194 ferredoxin-type protein; Provisional
Probab=59.29 E-value=3.1 Score=34.45 Aligned_cols=18 Identities=33% Similarity=0.720 Sum_probs=15.7
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...|+.||.|..+||+-.
T Consensus 137 ~~~C~gCg~C~~~CP~~A 154 (163)
T PRK10194 137 SQLCNGCGACAASCPVSA 154 (163)
T ss_pred cccCcCcchhhhhCCccc
Confidence 468999999999999853
No 228
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=59.16 E-value=3.6 Score=39.98 Aligned_cols=16 Identities=38% Similarity=0.991 Sum_probs=14.3
Q ss_pred HHhhhhchhhhcccCc
Q 026956 190 YECILCACCSTSCPSY 205 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~ 205 (230)
..||.||.|..+||..
T Consensus 255 ~~Ci~Cg~CidaCp~a 270 (434)
T TIGR02745 255 LECINCGLCIDACDDV 270 (434)
T ss_pred hhChhhhHHHHhCCCh
Confidence 4899999999999963
No 229
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=58.73 E-value=3.3 Score=31.82 Aligned_cols=17 Identities=24% Similarity=0.743 Sum_probs=15.1
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.|+.|+.+||..
T Consensus 33 ~~~C~~C~~C~~~CP~~ 49 (101)
T TIGR00402 33 SAVCTRCGECASACENN 49 (101)
T ss_pred cCcCcChhHHHHHcCcc
Confidence 45899999999999975
No 230
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=58.28 E-value=3 Score=35.94 Aligned_cols=17 Identities=29% Similarity=0.755 Sum_probs=15.1
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|+.+||.-
T Consensus 143 ~~~C~~Cg~Cv~vCP~~ 159 (191)
T PRK05113 143 SDLCTGCDLCVAPCPTD 159 (191)
T ss_pred CCcCCchHHHHHHcCcC
Confidence 46899999999999974
No 231
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=58.19 E-value=2.7 Score=35.23 Aligned_cols=18 Identities=33% Similarity=0.791 Sum_probs=15.4
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...||.||.|..+||.-
T Consensus 111 d~~~Ci~Cg~C~~aCp~~ 128 (165)
T TIGR01944 111 DEDNCIGCTKCIQACPVD 128 (165)
T ss_pred ECCcCCChhHHHHhCCcc
Confidence 456899999999999954
No 232
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=57.91 E-value=3.9 Score=38.45 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=15.4
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...||.||.|+.+||.-
T Consensus 160 D~ekCiGCg~Cv~ACPyg 177 (321)
T TIGR03478 160 DQERCKGYRYCVEACPYK 177 (321)
T ss_pred CHHHCcchHHHHHhCCCC
Confidence 356899999999999964
No 233
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=57.85 E-value=3 Score=37.26 Aligned_cols=17 Identities=29% Similarity=0.720 Sum_probs=15.2
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
..+|+.||.|..+||+.
T Consensus 200 ~~~C~~C~~C~~vCP~~ 216 (255)
T TIGR02163 200 REKCTNCMDCFNVCPEP 216 (255)
T ss_pred cccCeEcCCccCcCCCC
Confidence 46899999999999975
No 234
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=57.83 E-value=4 Score=35.99 Aligned_cols=17 Identities=29% Similarity=0.806 Sum_probs=14.5
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.|+.|..+||..
T Consensus 147 ~~~C~~C~~C~~~CP~~ 163 (234)
T TIGR02700 147 RKRCKGCGICVDACPRS 163 (234)
T ss_pred hhHCcCcchHHHhCCcc
Confidence 45799999999999964
No 235
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=57.26 E-value=3.3 Score=44.88 Aligned_cols=17 Identities=29% Similarity=0.858 Sum_probs=15.3
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|+.+||..
T Consensus 738 ~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 738 PLDCTGCGNCVDICPAK 754 (1165)
T ss_pred cccCcCccchhhhcCCC
Confidence 46899999999999984
No 236
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=57.13 E-value=3.9 Score=40.02 Aligned_cols=19 Identities=42% Similarity=1.048 Sum_probs=16.8
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
+....|-+||.|..+||+-
T Consensus 355 ~~~~~c~lcg~C~evCPv~ 373 (459)
T COG1139 355 DLPYACSLCGACTEVCPVK 373 (459)
T ss_pred ccchhhccccCCCCcCCCC
Confidence 4567999999999999985
No 237
>PRK13984 putative oxidoreductase; Provisional
Probab=57.05 E-value=3.8 Score=40.55 Aligned_cols=19 Identities=37% Similarity=0.915 Sum_probs=16.3
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
.+...||.||.|+.+||..
T Consensus 42 ~d~~~Ci~C~~C~~~Cp~~ 60 (604)
T PRK13984 42 NDWEKCIGCGTCSKICPTD 60 (604)
T ss_pred cChhhCcCccchhhhCCcc
Confidence 4577999999999999953
No 238
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=57.01 E-value=3.4 Score=34.54 Aligned_cols=17 Identities=35% Similarity=0.880 Sum_probs=15.1
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|+.+||.-
T Consensus 142 ~~~C~~Cg~Cv~~CP~~ 158 (165)
T TIGR01944 142 ADECTGCDLCVEPCPTD 158 (165)
T ss_pred cccccChhHHHHhcCcC
Confidence 46899999999999975
No 239
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=56.85 E-value=3.3 Score=37.41 Aligned_cols=19 Identities=32% Similarity=0.950 Sum_probs=16.5
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
..++.|..||.|..+||.-
T Consensus 197 ~gl~~C~~C~~C~~vCPkg 215 (251)
T PRK12386 197 HGLGYCNITKCCTEVCPEH 215 (251)
T ss_pred cCcccCcCCCCcCCcCCCC
Confidence 3578899999999999984
No 240
>PRK13409 putative ATPase RIL; Provisional
Probab=56.82 E-value=3.7 Score=41.09 Aligned_cols=17 Identities=35% Similarity=0.727 Sum_probs=14.9
Q ss_pred HHhhhhchhhhcccCcc
Q 026956 190 YECILCACCSTSCPSYW 206 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~ 206 (230)
.-||.||.|+--||.-.
T Consensus 49 ~~c~~c~~c~~~cp~~a 65 (590)
T PRK13409 49 ELCIGCGICVKKCPFDA 65 (590)
T ss_pred hhccccccccccCCcce
Confidence 37999999999999754
No 241
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=56.70 E-value=3.2 Score=40.14 Aligned_cols=19 Identities=37% Similarity=1.148 Sum_probs=16.6
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
...+.|..||.|..+||..
T Consensus 182 ~~~~~C~~C~~C~~~CP~g 200 (486)
T PRK06259 182 EGLYNCTTCGKCVEVCPKE 200 (486)
T ss_pred CCCcCCCCcCcccCcCCCC
Confidence 4578999999999999974
No 242
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=56.50 E-value=31 Score=23.92 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=27.4
Q ss_pred ecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeee---ccccccccCCC
Q 026956 72 LKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNG---LACLTKISPSG 128 (230)
Q Consensus 72 v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~---LAC~t~v~~~~ 128 (230)
+.+ ++||.++|...+ +.+ . ..+|.+||.-+ ..|.+.+.++.
T Consensus 12 ~~~-~~tl~~lL~~l~--~~~----~---------~vav~vNg~iv~r~~~~~~~l~~gD 55 (66)
T PRK05659 12 LPD-GESVAALLAREG--LAG----R---------RVAVEVNGEIVPRSQHASTALREGD 55 (66)
T ss_pred cCC-CCCHHHHHHhcC--CCC----C---------eEEEEECCeEeCHHHcCcccCCCCC
Confidence 335 789999999864 221 1 14789999533 46888887753
No 243
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=56.44 E-value=3.7 Score=36.10 Aligned_cols=18 Identities=28% Similarity=0.756 Sum_probs=15.8
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...||.||.|..+||..
T Consensus 44 D~~rCigC~~C~~aC~~~ 61 (225)
T TIGR03149 44 DETACIGCTACMDACREV 61 (225)
T ss_pred EHHHCcCcHHHHHHhhHH
Confidence 457999999999999974
No 244
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=56.31 E-value=4.2 Score=41.37 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=17.2
Q ss_pred hcHHHhhhhchhhhcccCccc
Q 026956 187 DGMYECILCACCSTSCPSYWW 207 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~~~ 207 (230)
.+...|+.||.|+..||....
T Consensus 605 id~~~C~GCg~C~~iCP~~a~ 625 (640)
T COG4231 605 IDPSSCNGCGSCVEVCPSFAI 625 (640)
T ss_pred ecccccccchhhhhcCchhhe
Confidence 445579999999999999854
No 245
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=56.15 E-value=6.4 Score=41.78 Aligned_cols=48 Identities=27% Similarity=0.520 Sum_probs=31.1
Q ss_pred CcccccCcCCCccCcceEEe--CCee--eccccccccCCCCceEEeeCCCCcceeeeeechhhHHHHh
Q 026956 93 SLTFRRSCREGICGSCAMNI--DGCN--GLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQY 156 (230)
Q Consensus 93 ~l~fr~gCr~GiCGsCaV~I--NG~~--~LAC~t~v~~~~~~itIEPL~~~pvirDLvVD~~~f~~k~ 156 (230)
+|.-+..|+.|.||+|.|.+ +|+. .+.|. .-||..--.||++.+..+.
T Consensus 876 SlE~~M~CG~G~C~~C~v~~~~~G~~~~~~vC~----------------DGPVF~~~ev~~d~~~~r~ 927 (944)
T PRK12779 876 SLNSIMVDATGMCGACMVPVTIDGKMVRKHACI----------------DGPEIDAHIIDWDKFLPRF 927 (944)
T ss_pred eecccccCCCeeeCeeeeeeecCCeeeeeEEEC----------------CCCeEEccEeeHhHHHHHH
Confidence 35666799999999999964 7753 45563 2244444455666665544
No 246
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=56.14 E-value=4.1 Score=40.63 Aligned_cols=17 Identities=35% Similarity=0.727 Sum_probs=14.9
Q ss_pred HHhhhhchhhhcccCcc
Q 026956 190 YECILCACCSTSCPSYW 206 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~ 206 (230)
.-||.||.|+.-||.-.
T Consensus 50 ~lCiGCGICvkkCPF~A 66 (591)
T COG1245 50 ELCIGCGICVKKCPFDA 66 (591)
T ss_pred hhhccchhhhccCCcce
Confidence 37999999999999764
No 247
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=55.62 E-value=42 Score=23.59 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=31.3
Q ss_pred EEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeec---cccccccCCCCceEEeeCC
Q 026956 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL---ACLTKISPSGSASTITPLP 137 (230)
Q Consensus 66 ~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~L---AC~t~v~~~~~~itIEPL~ 137 (230)
++++++ + ++||.++|..+.. ++ -.++|.+||+-+- -=.+.+.++..+-.|.|.+
T Consensus 8 ~~~~~~--~-~~tl~~ll~~l~~--~~-------------~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~v~ 64 (66)
T PRK08053 8 QPMQCA--A-GQTVHELLEQLNQ--LQ-------------PGAALAINQQIIPREQWAQHIVQDGDQILLFQVIA 64 (66)
T ss_pred eEEEcC--C-CCCHHHHHHHcCC--CC-------------CcEEEEECCEEeChHHcCccccCCCCEEEEEEEcc
Confidence 345554 4 7899999988642 21 1279999998653 1223445544444454443
No 248
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=55.01 E-value=3.6 Score=37.58 Aligned_cols=17 Identities=29% Similarity=0.794 Sum_probs=14.8
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|..||.|..+||.-
T Consensus 288 ~~~C~gCg~C~~~CP~~ 304 (312)
T PRK14028 288 YQYCKGCGVCAEVCPTG 304 (312)
T ss_pred cccCcCcCchhhhCCHh
Confidence 35799999999999974
No 249
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=54.60 E-value=3.9 Score=38.52 Aligned_cols=18 Identities=39% Similarity=0.733 Sum_probs=15.7
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...|+.||.|+.+||...
T Consensus 49 ~~~C~~Cg~Cv~~CP~~A 66 (374)
T TIGR02512 49 ESNCIGCGQCSLVCPVGA 66 (374)
T ss_pred cccCcCccCHHHhCCCCh
Confidence 458999999999999854
No 250
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=54.46 E-value=5 Score=37.13 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.2
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...|+.||.|.++|+--.
T Consensus 68 ~e~C~~CG~C~~vC~f~A 85 (284)
T COG1149 68 PEKCIRCGKCAEVCRFGA 85 (284)
T ss_pred hhhccccCcHHHhCCCCe
Confidence 456999999999998754
No 251
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=54.43 E-value=5 Score=35.38 Aligned_cols=18 Identities=28% Similarity=0.892 Sum_probs=15.6
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...|+.||.|..+||.-.
T Consensus 176 ~~~C~~Cg~C~~~CP~~A 193 (234)
T TIGR02700 176 LLKCVGCGKCKEACPYNA 193 (234)
T ss_pred hhhCCccchHHhhCCCCc
Confidence 458999999999999864
No 252
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=54.01 E-value=3.7 Score=36.16 Aligned_cols=17 Identities=35% Similarity=0.788 Sum_probs=15.3
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.||-|..|||..
T Consensus 99 ~d~CIGC~yCi~ACPyg 115 (203)
T COG0437 99 KDLCIGCGYCIAACPYG 115 (203)
T ss_pred CCcccCchHHHhhCCCC
Confidence 45899999999999986
No 253
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=53.41 E-value=4.1 Score=40.81 Aligned_cols=19 Identities=32% Similarity=0.747 Sum_probs=16.6
Q ss_pred HhcHHHhhhhchhhhcccCc
Q 026956 186 LDGMYECILCACCSTSCPSY 205 (230)
Q Consensus 186 ~~~~~~CI~CG~C~saCP~~ 205 (230)
|-+ ..|..||+|.++||+-
T Consensus 221 yVd-d~CtgCg~C~~vCPve 239 (622)
T COG1148 221 YVD-DKCTGCGACSEVCPVE 239 (622)
T ss_pred ccc-ccccccccccccCCcc
Confidence 444 7999999999999995
No 254
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=52.70 E-value=4.3 Score=39.51 Aligned_cols=17 Identities=35% Similarity=0.956 Sum_probs=15.2
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
..+|+.|+.|+.+||..
T Consensus 230 ~~~Ci~C~~Cv~vCP~g 246 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTG 246 (434)
T ss_pred CCCCCChhhhHHhCCCC
Confidence 35899999999999976
No 255
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=52.02 E-value=4.4 Score=37.94 Aligned_cols=18 Identities=33% Similarity=0.862 Sum_probs=16.2
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
.+..|..||.|..+||+.
T Consensus 50 ~~~~C~~C~~C~~~CP~~ 67 (397)
T TIGR03379 50 ALKYCTNCKRCEVACPSD 67 (397)
T ss_pred ccccCcCcCccchhcCCC
Confidence 367999999999999995
No 256
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=51.70 E-value=4.1 Score=35.84 Aligned_cols=19 Identities=26% Similarity=0.642 Sum_probs=16.5
Q ss_pred HHHhhhhchhhhcccCccc
Q 026956 189 MYECILCACCSTSCPSYWW 207 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~~ 207 (230)
...|+.||.|+.+||+...
T Consensus 189 ~~~C~~Cg~Cv~vCP~gAL 207 (234)
T PRK07569 189 SETCTSCGKCVQACPTGAI 207 (234)
T ss_pred cccccchHHHHHhCCCCcE
Confidence 4589999999999999754
No 257
>PRK08764 ferredoxin; Provisional
Probab=51.40 E-value=5.1 Score=32.47 Aligned_cols=17 Identities=29% Similarity=0.723 Sum_probs=15.1
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|+.+||.-
T Consensus 114 ~~~C~~Cg~Cv~~CP~~ 130 (135)
T PRK08764 114 APLCTGCELCVPACPVD 130 (135)
T ss_pred CCcCcCccchhhhcCcc
Confidence 45899999999999974
No 258
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=50.82 E-value=5.7 Score=39.29 Aligned_cols=18 Identities=22% Similarity=0.489 Sum_probs=15.7
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...||.|+.|+.+||.-
T Consensus 212 D~dkCiGCg~CV~ACPyg 229 (492)
T TIGR01660 212 DQDKCRGWRMCISGCPYK 229 (492)
T ss_pred ehhhccChHHHHHhCCCC
Confidence 457999999999999964
No 259
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=50.45 E-value=5.9 Score=37.19 Aligned_cols=19 Identities=32% Similarity=0.702 Sum_probs=16.0
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
.+.+.||.||-|+.+||..
T Consensus 198 id~~~Ci~Cg~Ci~~Cp~~ 216 (317)
T COG2221 198 IDGSKCIGCGKCIRACPKA 216 (317)
T ss_pred EehhhccCccHHhhhCChh
Confidence 4577999999999999944
No 260
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=50.11 E-value=5.4 Score=35.69 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=18.0
Q ss_pred HhcHHHhhhhchhhhcccCcc
Q 026956 186 LDGMYECILCACCSTSCPSYW 206 (230)
Q Consensus 186 ~~~~~~CI~CG~C~saCP~~~ 206 (230)
+.+...||.|+.|..+|+...
T Consensus 47 ~iD~~kCiGC~~C~~AC~~~n 67 (244)
T PRK14993 47 LIDLRRCIGCQSCTVSCTIEN 67 (244)
T ss_pred EEEHHHCCCchHHHHHhhhhc
Confidence 356889999999999999854
No 261
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=50.07 E-value=7.5 Score=35.67 Aligned_cols=22 Identities=32% Similarity=0.889 Sum_probs=18.6
Q ss_pred HHhcHHHhhhhchhhhcccCcc
Q 026956 185 KLDGMYECILCACCSTSCPSYW 206 (230)
Q Consensus 185 ~~~~~~~CI~CG~C~saCP~~~ 206 (230)
.....+.|..|+.|.++||+.-
T Consensus 53 ~~~~~~~C~~C~~C~~~CP~~i 74 (388)
T COG0247 53 VYEALDTCLACGACATACPSGI 74 (388)
T ss_pred hHHHHHhCcCccchHhhCCCCC
Confidence 3455789999999999999973
No 262
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=49.59 E-value=4.5 Score=37.96 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.4
Q ss_pred HHHHhcHHHhhhhchhhhcccCcc
Q 026956 183 RAKLDGMYECILCACCSTSCPSYW 206 (230)
Q Consensus 183 ~~~~~~~~~CI~CG~C~saCP~~~ 206 (230)
...+.+.+.||.|+.|+.+|...+
T Consensus 38 ~~~liD~tkCiGC~aC~~AC~~~n 61 (328)
T PRK10882 38 LGMLYDSTLCVGCQACVTKCQEIN 61 (328)
T ss_pred EEEEEeHhhCCCChHHHHHhcccc
Confidence 345678899999999999999865
No 263
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=49.34 E-value=6.5 Score=34.55 Aligned_cols=17 Identities=29% Similarity=0.800 Sum_probs=14.8
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|..+||.-
T Consensus 124 ~~~C~~C~~C~~aCP~~ 140 (225)
T TIGR03149 124 KDLCVGCQYCIAACPYR 140 (225)
T ss_pred hhhCCcchHHHHhCCCC
Confidence 45899999999999975
No 264
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=49.33 E-value=5.7 Score=39.68 Aligned_cols=14 Identities=36% Similarity=1.018 Sum_probs=11.1
Q ss_pred HhhhhchhhhcccC
Q 026956 191 ECILCACCSTSCPS 204 (230)
Q Consensus 191 ~CI~CG~C~saCP~ 204 (230)
.|+.||.|+.+||.
T Consensus 579 ~C~~Cg~C~~~CP~ 592 (595)
T TIGR03336 579 LCTGCGVCAQICPF 592 (595)
T ss_pred CCcCHHHHHhhCcc
Confidence 58888888888875
No 265
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=49.15 E-value=5 Score=35.76 Aligned_cols=19 Identities=32% Similarity=0.936 Sum_probs=16.6
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
.....|..||.|..+||..
T Consensus 203 ~gi~~C~~C~~C~~vCPk~ 221 (239)
T PRK13552 203 DGVFGCMSLLGCEDNCPKD 221 (239)
T ss_pred CCcCCCcCcCccchhCCCC
Confidence 3578999999999999973
No 266
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=49.06 E-value=42 Score=24.22 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=33.0
Q ss_pred EeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeeccccccccCCCCceEEeeC
Q 026956 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPL 136 (230)
Q Consensus 70 v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~~~~~~itIEPL 136 (230)
+++...+.||-+++..+.+.. |.+. + .+ +.|.|.|||+.+.. .+.+.++.++.-+-|.
T Consensus 20 ~~~~~~~~tv~~L~~~L~~~~-p~l~-~--~~----~~~~v~vn~~~v~~-~~~l~dgDevai~Ppv 77 (80)
T TIGR01682 20 LELPDESTTVGELKEHLAKEG-PELA-A--SR----GQVMVAVNEEYVTD-DALLNEGDEVAFIPPV 77 (80)
T ss_pred EECCCCCcCHHHHHHHHHHhC-chhh-h--hc----cceEEEECCEEcCC-CcCcCCCCEEEEeCCC
Confidence 444342378999888886433 2221 1 11 34789999998764 5566654333334443
No 267
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=48.83 E-value=50 Score=24.05 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=23.2
Q ss_pred eecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeec
Q 026956 71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL 118 (230)
Q Consensus 71 ~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~L 118 (230)
++.+ ++|+.|+|..+. +.+ -.++|.+||..+.
T Consensus 13 e~~~-~~tv~dLL~~l~--~~~-------------~~vav~vNg~iVp 44 (68)
T COG2104 13 EIAE-GTTVADLLAQLG--LNP-------------EGVAVAVNGEIVP 44 (68)
T ss_pred EcCC-CCcHHHHHHHhC--CCC-------------ceEEEEECCEEcc
Confidence 3444 689999999975 221 2379999999776
No 268
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=48.70 E-value=7.2 Score=35.84 Aligned_cols=17 Identities=35% Similarity=0.893 Sum_probs=15.1
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.||.|+.+||.-
T Consensus 123 ~dkCigC~~Cv~aCP~~ 139 (283)
T TIGR01582 123 HSKCIGCGYCIVGCPFN 139 (283)
T ss_pred HHHCCcchHHHhhCCCC
Confidence 46899999999999975
No 269
>PRK09898 hypothetical protein; Provisional
Probab=48.50 E-value=5.6 Score=34.37 Aligned_cols=17 Identities=41% Similarity=1.046 Sum_probs=14.8
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.|+.|+.+||..
T Consensus 153 ~~~CigC~~C~~aCP~~ 169 (208)
T PRK09898 153 HKRCIGCSACTTACPWM 169 (208)
T ss_pred cccCCCcCcccccCCCC
Confidence 45799999999999975
No 270
>PRK13795 hypothetical protein; Provisional
Probab=48.05 E-value=6.6 Score=39.78 Aligned_cols=14 Identities=14% Similarity=-0.017 Sum_probs=10.1
Q ss_pred ChhHHHHHHHhhhc
Q 026956 76 GPMVLDALIKIKSE 89 (230)
Q Consensus 76 ~~TvLdaL~~i~~~ 89 (230)
++|-+|+..+|..+
T Consensus 383 ~Wt~~dVw~YI~~~ 396 (636)
T PRK13795 383 DWTALEVWLYIFWR 396 (636)
T ss_pred hCCHHHHHHHHHHh
Confidence 57788888877643
No 271
>PRK09898 hypothetical protein; Provisional
Probab=47.89 E-value=6 Score=34.16 Aligned_cols=17 Identities=35% Similarity=1.103 Sum_probs=15.1
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|+.+||.-
T Consensus 180 ~~kC~~Cg~Cv~~CP~~ 196 (208)
T PRK09898 180 SSKCVLCGECANACPTG 196 (208)
T ss_pred CCcCcChHHHHHhCCcc
Confidence 45899999999999975
No 272
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=47.56 E-value=5.7 Score=36.48 Aligned_cols=18 Identities=33% Similarity=0.831 Sum_probs=16.1
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
.++.|..||.|..+||..
T Consensus 242 gl~~C~~C~~C~~vCPkg 259 (276)
T PLN00129 242 KLYRCHTIRNCSNACPKG 259 (276)
T ss_pred CCCcCcChhhccccCCCC
Confidence 468999999999999984
No 273
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=47.25 E-value=8.3 Score=40.29 Aligned_cols=17 Identities=29% Similarity=0.921 Sum_probs=15.2
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|..+||.-
T Consensus 436 ~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 436 EEQCYACGRCEQACPKN 452 (784)
T ss_pred HhhhhhhhHHhccCCCC
Confidence 46899999999999984
No 274
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=46.75 E-value=8.1 Score=31.83 Aligned_cols=17 Identities=35% Similarity=0.788 Sum_probs=14.8
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|..+||.-
T Consensus 94 ~~~C~~C~~C~~aCP~~ 110 (161)
T TIGR02951 94 QDKCIGCRYCVWACPYG 110 (161)
T ss_pred HHhCCCchHHHhhCCCC
Confidence 45899999999999964
No 275
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=46.38 E-value=7.4 Score=34.41 Aligned_cols=19 Identities=26% Similarity=0.770 Sum_probs=16.2
Q ss_pred hcHHHhhhhchhhhcccCc
Q 026956 187 DGMYECILCACCSTSCPSY 205 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~ 205 (230)
.+...|+.||.|+.+||..
T Consensus 171 id~~~C~~C~~C~~aCP~~ 189 (228)
T TIGR03294 171 VNQGLCMGCGTCAAACPTR 189 (228)
T ss_pred EChhhCcChhHHHHhCCHh
Confidence 4567999999999999954
No 276
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=46.35 E-value=13 Score=35.91 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=22.2
Q ss_pred CHHHHHHHhcHHHhhhhchhhhcccCcc
Q 026956 179 SKKDRAKLDGMYECILCACCSTSCPSYW 206 (230)
Q Consensus 179 ~pe~~~~~~~~~~CI~CG~C~saCP~~~ 206 (230)
+..+.+-...+..|+.|.-|...||+..
T Consensus 22 ~~~~~e~~r~~~iC~~Cr~C~~~CpvfP 49 (389)
T PRK15033 22 TAPEAEVARQMQICNACRYCEGFCAVFP 49 (389)
T ss_pred CcHHHHHHHHhHhCCCCCCccccCCCch
Confidence 3344455667889999999999999984
No 277
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=46.10 E-value=7.6 Score=36.44 Aligned_cols=18 Identities=28% Similarity=0.685 Sum_probs=15.5
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...||.|+.|..+||.-
T Consensus 141 d~dkCigCg~Cv~aCP~g 158 (328)
T PRK10882 141 DKDVCTGCRYCMVACPFN 158 (328)
T ss_pred CHHHcCcccHHHHhCCcc
Confidence 356899999999999954
No 278
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=45.47 E-value=6.9 Score=32.00 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=15.5
Q ss_pred cHHHhhhhc-----hhhhcccCc
Q 026956 188 GMYECILCA-----CCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG-----~C~saCP~~ 205 (230)
+...|+.|| .|+.+||..
T Consensus 6 ~~~~C~gC~~~~~~~Cv~~CP~~ 28 (132)
T TIGR02060 6 YPTKCDGCKAGEKTACVYICPND 28 (132)
T ss_pred ccccccCccCCchhcCHhhcCcc
Confidence 346899999 999999975
No 279
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=44.87 E-value=8.6 Score=34.39 Aligned_cols=17 Identities=35% Similarity=0.895 Sum_probs=14.8
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.|+.|+.+||.-
T Consensus 129 ~~~CigC~~Cv~aCP~~ 145 (244)
T PRK14993 129 NKRCVGCAYCVQACPYD 145 (244)
T ss_pred HHHCCCHHHHHHhcCCC
Confidence 46899999999999974
No 280
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=42.64 E-value=8.8 Score=33.95 Aligned_cols=19 Identities=32% Similarity=0.917 Sum_probs=16.4
Q ss_pred cHHHhhhhchhhhcccCcc
Q 026956 188 GMYECILCACCSTSCPSYW 206 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~~ 206 (230)
+...|+.||.|+.+||...
T Consensus 201 ~~~~C~~C~~C~~~CP~~~ 219 (228)
T TIGR03294 201 NRDRCIKCGACYVQCPRAF 219 (228)
T ss_pred ChhhccCHHHHHHHcCCCC
Confidence 4568999999999999864
No 281
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=42.29 E-value=11 Score=39.12 Aligned_cols=17 Identities=29% Similarity=0.958 Sum_probs=15.6
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|.++||.-
T Consensus 402 ~~~Ct~CG~C~evCP~g 418 (731)
T cd01916 402 FDQCVGCGRCEQECPKE 418 (731)
T ss_pred HhhhhhhhHHhhhCCCC
Confidence 67999999999999984
No 282
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=42.23 E-value=12 Score=34.35 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=16.2
Q ss_pred HHhhhhchhhhcccCcccC
Q 026956 190 YECILCACCSTSCPSYWWT 208 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~~~ 208 (230)
..|..|+.|..+||+-...
T Consensus 159 ~~C~~C~~C~~aCPt~AI~ 177 (282)
T TIGR00276 159 EYCGRCTKCIDACPTQALV 177 (282)
T ss_pred CCCccHHHHHHhcCccccc
Confidence 4799999999999997543
No 283
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=41.42 E-value=10 Score=31.86 Aligned_cols=18 Identities=33% Similarity=0.733 Sum_probs=15.4
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...|+.||.|..+||.-.
T Consensus 86 ~~~C~~C~~C~~~CP~~a 103 (181)
T PRK10330 86 QERCIGCKTCVVACPYGA 103 (181)
T ss_pred hhhCCCcchhhhhCCccC
Confidence 458999999999999653
No 284
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=41.07 E-value=9.8 Score=35.97 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=16.0
Q ss_pred HHhhhhchhhhcccCccc
Q 026956 190 YECILCACCSTSCPSYWW 207 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~~ 207 (230)
.+|+.||.|++-||+...
T Consensus 193 ~kc~~c~~cv~~cp~~Ai 210 (354)
T COG2768 193 EKCYDCGLCVKICPVGAI 210 (354)
T ss_pred ecccccchhhhhCCCcce
Confidence 489999999999999754
No 285
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=40.21 E-value=8.7 Score=36.71 Aligned_cols=17 Identities=29% Similarity=0.712 Sum_probs=14.6
Q ss_pred HHhhhhchhhhcccCcc
Q 026956 190 YECILCACCSTSCPSYW 206 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~ 206 (230)
..|+.|+.|..+||.-.
T Consensus 39 ~~C~~C~~C~~~CP~~A 55 (411)
T TIGR03224 39 DVCNGCMACVSPCPTGA 55 (411)
T ss_pred ccCcCHHHHHhhcCccc
Confidence 36999999999999753
No 286
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=39.89 E-value=11 Score=39.32 Aligned_cols=17 Identities=35% Similarity=0.933 Sum_probs=15.4
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.||.|..+||.-
T Consensus 441 ~~~Ct~CG~CeeVCPtg 457 (781)
T PRK00941 441 YDKCIGCGRCEQVCPKN 457 (781)
T ss_pred hhhccchhHHhhhCCCC
Confidence 57999999999999984
No 287
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=39.81 E-value=88 Score=23.87 Aligned_cols=64 Identities=8% Similarity=-0.122 Sum_probs=35.4
Q ss_pred EEeecCCChhHHHHHHHhhhccCCCcccccCc-CCCccCcceEEeCCeeec---cccccccCCCCceEEee
Q 026956 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDGCNGL---ACLTKISPSGSASTITP 135 (230)
Q Consensus 69 ~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gC-r~GiCGsCaV~ING~~~L---AC~t~v~~~~~~itIEP 135 (230)
+++.++ +.||-|+|.++.+++.+ +.-+--+ ...+.-.=-|.|||+.+. .=.|.+.++ ++|+|=|
T Consensus 22 ~~~~~~-~~tV~dll~~L~~~~~~-~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dg-D~v~i~P 89 (94)
T cd01764 22 VLDGEK-PVTVGDLLDYVASNLLE-ERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDG-DHVVFIS 89 (94)
T ss_pred eccCCC-CCcHHHHHHHHHHhCch-hhhhhEecCCcccCCEEEEECCccccccCCcccCCCCc-CEEEEEC
Confidence 345444 68999999999765532 1111112 122333346889998752 344566654 5555544
No 288
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=39.74 E-value=8.9 Score=37.71 Aligned_cols=16 Identities=31% Similarity=0.939 Sum_probs=11.0
Q ss_pred HHHhhhhchhhhcccC
Q 026956 189 MYECILCACCSTSCPS 204 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~ 204 (230)
...|+.||.|..+||.
T Consensus 540 ~~~C~~Cg~C~~~CP~ 555 (564)
T PRK12771 540 YDKCTGCHICADVCPC 555 (564)
T ss_pred cccCcChhHHHhhcCc
Confidence 4567777777777775
No 289
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=39.32 E-value=11 Score=33.50 Aligned_cols=17 Identities=29% Similarity=0.993 Sum_probs=14.8
Q ss_pred cHHHhhhhchhhhcccC
Q 026956 188 GMYECILCACCSTSCPS 204 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~ 204 (230)
+...|+.|+.|..+||.
T Consensus 197 ~~~~C~~C~~C~~~Cp~ 213 (259)
T cd07030 197 DLEDCSLCKLCERACDA 213 (259)
T ss_pred ChhhCcCchHHHHhCCC
Confidence 35689999999999994
No 290
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=39.27 E-value=11 Score=40.56 Aligned_cols=16 Identities=38% Similarity=0.766 Sum_probs=14.1
Q ss_pred HhhhhchhhhcccCcc
Q 026956 191 ECILCACCSTSCPSYW 206 (230)
Q Consensus 191 ~CI~CG~C~saCP~~~ 206 (230)
.|+.||.|..+||.-.
T Consensus 922 ~C~~CG~C~~vCP~~a 937 (1012)
T TIGR03315 922 MCNECGNCATFCPYDG 937 (1012)
T ss_pred cccccchHHHhCCCCc
Confidence 4999999999999953
No 291
>PRK07118 ferredoxin; Validated
Probab=38.61 E-value=9.4 Score=34.87 Aligned_cols=17 Identities=29% Similarity=0.747 Sum_probs=14.7
Q ss_pred HHhhhhchhhhcccCcc
Q 026956 190 YECILCACCSTSCPSYW 206 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~ 206 (230)
..||.||.|..+||+-.
T Consensus 139 ~~CigCg~C~~aCp~~A 155 (280)
T PRK07118 139 YGCLGLGSCVAACPFDA 155 (280)
T ss_pred CCCcChhHHHHhCCccC
Confidence 36999999999999753
No 292
>PRK13795 hypothetical protein; Provisional
Probab=37.88 E-value=9.9 Score=38.55 Aligned_cols=18 Identities=33% Similarity=0.907 Sum_probs=15.7
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...|+.||.|..+||..
T Consensus 579 ~~~~C~~Cg~C~~~CP~~ 596 (636)
T PRK13795 579 RAAECVGCGVCVGACPTG 596 (636)
T ss_pred ccccCCCHhHHHHhCCcc
Confidence 457999999999999965
No 293
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=37.67 E-value=15 Score=37.02 Aligned_cols=20 Identities=35% Similarity=0.693 Sum_probs=15.1
Q ss_pred cHHHhhhhchhhhcccCccc
Q 026956 188 GMYECILCACCSTSCPSYWW 207 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~~~ 207 (230)
+...|-.||.|.++||....
T Consensus 585 ~~~~C~gCG~C~~aCp~gai 604 (622)
T COG1148 585 NPLRCKGCGICSAACPSGAI 604 (622)
T ss_pred ChhhhCcccchhhhCCcccc
Confidence 45578888888888888754
No 294
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=36.94 E-value=12 Score=34.83 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=15.9
Q ss_pred HHhhhhchhhhcccCccc
Q 026956 190 YECILCACCSTSCPSYWW 207 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~~ 207 (230)
..|..|+.|..+||.-..
T Consensus 205 ~fC~~C~~C~~~CP~~Ai 222 (314)
T TIGR02486 205 KFCETCGKCADECPSGAI 222 (314)
T ss_pred ccCcchhHHHhhCCcccc
Confidence 479999999999999754
No 295
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=36.78 E-value=24 Score=34.53 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=19.8
Q ss_pred HHHhcHHHhhhhc-hhhhcccCcc
Q 026956 184 AKLDGMYECILCA-CCSTSCPSYW 206 (230)
Q Consensus 184 ~~~~~~~~CI~CG-~C~saCP~~~ 206 (230)
+.....+.|+.|+ -|...||+..
T Consensus 17 ~a~~~a~rCl~C~~~C~~~cp~~~ 40 (457)
T COG0493 17 AAIYEAARCLDCGDPCITGCPVHN 40 (457)
T ss_pred HHHHHHHHHHcCCCccccCCcCCC
Confidence 4567789999999 5999999985
No 296
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=36.07 E-value=13 Score=35.07 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=21.2
Q ss_pred cHHHhhhhchhhhcccCcccCC-CCCcCHHHHH
Q 026956 188 GMYECILCACCSTSCPSYWWTS-EAYLGPAALL 219 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~~~~~-~~FlGPaal~ 219 (230)
+...||.||-|..+||...... =++.-|.++-
T Consensus 219 ~~~~ci~c~~c~~ac~~gav~~~W~~~~~~f~e 251 (354)
T COG2768 219 DYEKCIGCGQCMEACPYGAVDQNWEEDSPEFLE 251 (354)
T ss_pred chhhccchhhhhhhccCcccccchhhccHHHHH
Confidence 3679999999999999763321 1344454443
No 297
>PRK07118 ferredoxin; Validated
Probab=35.39 E-value=14 Score=33.82 Aligned_cols=18 Identities=28% Similarity=0.827 Sum_probs=15.6
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...|+.||.|+.+||.-
T Consensus 166 d~~~C~~Cg~Cv~aCP~~ 183 (280)
T PRK07118 166 DEDKCTGCGACVKACPRN 183 (280)
T ss_pred ChhhCcChhHHHHhcCcc
Confidence 456899999999999963
No 298
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=34.28 E-value=18 Score=39.07 Aligned_cols=46 Identities=30% Similarity=0.678 Sum_probs=32.6
Q ss_pred hhHHHHHHHhhh-----c--cCCCcccccCcC-CCccCcceEEeCCeee--ccccc
Q 026956 77 PMVLDALIKIKS-----E--IDPSLTFRRSCR-EGICGSCAMNIDGCNG--LACLT 122 (230)
Q Consensus 77 ~TvLdaL~~i~~-----~--~d~~l~fr~gCr-~GiCGsCaV~ING~~~--LAC~t 122 (230)
..++.++..+.+ + ...++.-..-|. .|+||.|-++++|+.. +||..
T Consensus 944 ~~mm~~~~~~~~~~~~~~~~~i~svns~M~c~m~giC~qC~~~~~G~~k~vfaC~~ 999 (1028)
T PRK06567 944 PEIIEELQSLKNEIFGENTEIIVSVNSSMQCMMKGICGQCIQKVKGEQKYIFACSQ 999 (1028)
T ss_pred HHHHHHHHHHHhhhccCCCcEEEecCcHHHHHhhhhhhhheEEecCeeEEEEEecC
Confidence 457777777653 1 112333344599 8999999999999755 99987
No 299
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=34.25 E-value=16 Score=31.84 Aligned_cols=18 Identities=39% Similarity=1.036 Sum_probs=15.6
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
....||-|-.|..+||.-
T Consensus 109 geerCIACklCeavCPaq 126 (212)
T KOG3256|consen 109 GEERCIACKLCEAVCPAQ 126 (212)
T ss_pred cchhhhhHHHHHHhCCcc
Confidence 345899999999999975
No 300
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=33.70 E-value=92 Score=21.86 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=27.3
Q ss_pred EEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCe--eeccccccccCCC
Q 026956 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGC--NGLACLTKISPSG 128 (230)
Q Consensus 67 ~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~--~~LAC~t~v~~~~ 128 (230)
.++++ + ++||.++|.... +++ ...+|.+||. ++-.=.+.+.++.
T Consensus 9 ~~~~~--~-~~tl~~ll~~l~--~~~-------------~~vav~~N~~iv~r~~~~~~L~~gD 54 (65)
T PRK05863 9 QVEVD--E-QTTVAALLDSLG--FPE-------------KGIAVAVDWSVLPRSDWATKLRDGA 54 (65)
T ss_pred EEEcC--C-CCcHHHHHHHcC--CCC-------------CcEEEEECCcCcChhHhhhhcCCCC
Confidence 45454 4 789999999875 221 1369999997 4433334455543
No 301
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=33.23 E-value=30 Score=31.71 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=33.3
Q ss_pred CCcccccCcCCCccCc-ceEEeCCeeeccccccccCCCCceEEeeCC
Q 026956 92 PSLTFRRSCREGICGS-CAMNIDGCNGLACLTKISPSGSASTITPLP 137 (230)
Q Consensus 92 ~~l~fr~gCr~GiCGs-CaV~ING~~~LAC~t~v~~~~~~itIEPL~ 137 (230)
++|.|...+...+||+ |.+.|||+++....+.....++++++.+..
T Consensus 38 ~~l~f~~~~~iAitGA~~~~~ln~~~~~~~~~~~v~~Gd~L~~g~~~ 84 (280)
T smart00797 38 PTLRFTADAVIALTGADFPATLDGQPVPPWKPFLVRAGQVLSLGAPK 84 (280)
T ss_pred EEEEECCCcEEEEeCCCCeeeECCEEcCCCeEEEECCCCEEEeCCCC
Confidence 4566777788899995 889999999866554444446777776554
No 302
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=31.98 E-value=28 Score=35.06 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=19.5
Q ss_pred HHHhcHHHhhhhc---hhhhcccCcc
Q 026956 184 AKLDGMYECILCA---CCSTSCPSYW 206 (230)
Q Consensus 184 ~~~~~~~~CI~CG---~C~saCP~~~ 206 (230)
+.....+.|+.|| -|.++||...
T Consensus 202 ~~~~ea~rC~~C~~~~~C~~~CP~~~ 227 (639)
T PRK12809 202 QATYESDRCVYCAEKANCNWHCPLHN 227 (639)
T ss_pred HHHHHHHHHhCCCCCCcccccCCCCC
Confidence 3557789999999 7999999974
No 303
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=31.81 E-value=1.5e+02 Score=20.23 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=20.2
Q ss_pred ecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeee
Q 026956 72 LKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNG 117 (230)
Q Consensus 72 v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~ 117 (230)
+.+ +.||.++|..+.. .+ .-++.+||+.+
T Consensus 12 ~~~-~~tl~~ll~~l~~--~~--------------~~~v~vN~~~v 40 (65)
T PRK06944 12 LPD-GATVADALAAYGA--RP--------------PFAVAVNGDFV 40 (65)
T ss_pred CCC-CCcHHHHHHhhCC--CC--------------CeEEEECCEEc
Confidence 334 7899999998751 22 14789999864
No 304
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=31.71 E-value=19 Score=32.94 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=14.9
Q ss_pred HHHhh-hhchhhhcccCcc
Q 026956 189 MYECI-LCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI-~CG~C~saCP~~~ 206 (230)
...|+ .|+.|..+||...
T Consensus 207 ~~~~~~gCd~Cq~vCP~n~ 225 (282)
T TIGR00276 207 CGGRSYGCDICQEVCPWNK 225 (282)
T ss_pred hcCcccCCCCccccCCCCC
Confidence 45687 5999999999965
No 305
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=31.66 E-value=19 Score=39.29 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=19.8
Q ss_pred HHHHhcHHHhhhhchhhh-cccCc
Q 026956 183 RAKLDGMYECILCACCST-SCPSY 205 (230)
Q Consensus 183 ~~~~~~~~~CI~CG~C~s-aCP~~ 205 (230)
.+...+.+.|+.||+|+. .||.+
T Consensus 655 rK~~Id~s~Cn~~~~C~~G~CPsf 678 (1159)
T PRK13030 655 RKRRIDQSSCNKDFSCVNGFCPSF 678 (1159)
T ss_pred ccEEECHHHCCCccccccCCCCCC
Confidence 345567889999999999 99998
No 306
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=31.61 E-value=19 Score=39.33 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=19.8
Q ss_pred HHHHhcHHHhhhhchhhh-cccCc
Q 026956 183 RAKLDGMYECILCACCST-SCPSY 205 (230)
Q Consensus 183 ~~~~~~~~~CI~CG~C~s-aCP~~ 205 (230)
++...+.+.|+.|++|+. .||.+
T Consensus 669 rK~~Idqs~Cn~d~sC~~G~CPsF 692 (1165)
T PRK09193 669 RKRRIDQSSCNKDFSCLKGFCPSF 692 (1165)
T ss_pred ccEEECHhHCCCccccccCCCCCc
Confidence 345567889999999999 99998
No 307
>TIGR00724 urea_amlyse_rel biotin-dependent carboxylase uncharacterized domain. Urea amidolyase of Saccharomyces cerevisiae is a 1835 amino acid protein with an amidase domain, a biotin/lipoyl cofactor attachment domain, a carbamoyl-phosphate synthase L chain-like domain, and uncharacterized regions. It has both urea carboxylase and allophanate hydrolase activities. This alignment models a domain that represents uncharacterized prokaryotic proteins of about 300 amino acids, regions of prokaryotic urea carboxylase and of the urea carboxylase region of yeast urea amidolyase, and regions of other biotin-containing proteins.
Probab=31.02 E-value=27 Score=32.67 Aligned_cols=46 Identities=11% Similarity=0.189 Sum_probs=31.9
Q ss_pred CCcccccCcCCCccCc-ceEEeCCeeecc-ccccccCCCCceEEeeCC
Q 026956 92 PSLTFRRSCREGICGS-CAMNIDGCNGLA-CLTKISPSGSASTITPLP 137 (230)
Q Consensus 92 ~~l~fr~gCr~GiCGs-CaV~ING~~~LA-C~t~v~~~~~~itIEPL~ 137 (230)
++|.|...+...+||+ +.+.|||+++.. ........++++++.+..
T Consensus 60 ~~l~f~~~~~iAltGA~~~~~lng~~~~~~~~~~~v~~Gd~L~~g~~~ 107 (314)
T TIGR00724 60 PTIRFHCDVIFAVTGADTDLCLNDGQVIPQWRPYEVKRGQILSLGRLK 107 (314)
T ss_pred EEEEEcCCeEEEEeCCCCcceeCCcccCCCceEEEECCCCEEEeCCCC
Confidence 5567777778899998 899999999855 332222335667776554
No 308
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=31.00 E-value=19 Score=37.31 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=15.8
Q ss_pred HhhhhchhhhcccCcccCCCCC
Q 026956 191 ECILCACCSTSCPSYWWTSEAY 212 (230)
Q Consensus 191 ~CI~CG~C~saCP~~~~~~~~F 212 (230)
+|..||-|+.+||+....+..|
T Consensus 191 ~~~~cG~cv~vCP~GAl~~k~~ 212 (797)
T PRK07860 191 QSYFSGNTVQICPVGALTGAAY 212 (797)
T ss_pred CccccCCchhhCCccccccccc
Confidence 5678899999999876554433
No 309
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=30.91 E-value=17 Score=32.38 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=15.6
Q ss_pred HHHhhhhchhhhcccCcc
Q 026956 189 MYECILCACCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~~ 206 (230)
...|+.|+.|..+||...
T Consensus 168 ~~~C~~C~~C~~~CP~~v 185 (259)
T cd07030 168 DEDCDGCGKCVEECPRGV 185 (259)
T ss_pred hhhCCChHHHHHhCCccc
Confidence 368999999999999864
No 310
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=30.80 E-value=11 Score=36.24 Aligned_cols=29 Identities=21% Similarity=0.473 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhcHHHhhhhc--hhhhcccCcc
Q 026956 176 IPQSKKDRAKLDGMYECILCA--CCSTSCPSYW 206 (230)
Q Consensus 176 ~~~~pe~~~~~~~~~~CI~CG--~C~saCP~~~ 206 (230)
..+++++ .......|+.|+ -|..+||...
T Consensus 28 ~~~~~~~--~~~~~~~c~~c~~~~C~~~CP~~~ 58 (467)
T TIGR01318 28 CPFDPGQ--AQYQADRCLYCGNPYCEWKCPVHN 58 (467)
T ss_pred CCCCHHH--HHHHHHhcccCCCccccccCCCCC
Confidence 3455553 455688999999 6999999974
No 311
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=30.40 E-value=19 Score=36.19 Aligned_cols=18 Identities=33% Similarity=0.796 Sum_probs=15.3
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...|+.||.|..+||.-
T Consensus 83 d~~~C~gC~~C~~~CP~~ 100 (639)
T PRK12809 83 DEQKCIGCKRCAIACPFG 100 (639)
T ss_pred ChhhCcchhhHhhhcCCC
Confidence 356899999999999964
No 312
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=30.01 E-value=38 Score=27.34 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.4
Q ss_pred CCCCcceeeeeechhhHHHHhh
Q 026956 136 LPHMFVIKDLVVDMTNFYNQYK 157 (230)
Q Consensus 136 L~~~pvirDLvVD~~~f~~k~k 157 (230)
-++.|++.|.-+|.+.|++++.
T Consensus 90 ~Pg~P~~hD~epDid~fy~~wl 111 (112)
T PF08882_consen 90 PPGYPPIHDFEPDIDTFYREWL 111 (112)
T ss_pred CCCCCceEecccCHHHHHHHhc
Confidence 3589999999999999998764
No 313
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=29.86 E-value=21 Score=36.66 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=15.8
Q ss_pred HhhhhchhhhcccCcccCCCCC
Q 026956 191 ECILCACCSTSCPSYWWTSEAY 212 (230)
Q Consensus 191 ~CI~CG~C~saCP~~~~~~~~F 212 (230)
+|..||.|+++||+....+..|
T Consensus 185 ~~~~cg~cv~~CP~GAl~~k~~ 206 (776)
T PRK09129 185 DSELSGNMIDLCPVGALTSKPF 206 (776)
T ss_pred cCcccCCchhhCCccccccccc
Confidence 4566999999999886654433
No 314
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=29.55 E-value=21 Score=35.52 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=16.0
Q ss_pred HhhhhchhhhcccCcccCCCCC
Q 026956 191 ECILCACCSTSCPSYWWTSEAY 212 (230)
Q Consensus 191 ~CI~CG~C~saCP~~~~~~~~F 212 (230)
+|..||.|+.+||+......+|
T Consensus 183 ~~~~cg~cv~vCP~GAl~~k~~ 204 (603)
T TIGR01973 183 ESELSGNLIDICPVGALTSKPY 204 (603)
T ss_pred CCcccCChHhhCCccccccccc
Confidence 4567999999999986554444
No 315
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=29.42 E-value=13 Score=35.37 Aligned_cols=24 Identities=25% Similarity=0.724 Sum_probs=19.9
Q ss_pred HHHHhcHHHhhhh--chhhhcccCcc
Q 026956 183 RAKLDGMYECILC--ACCSTSCPSYW 206 (230)
Q Consensus 183 ~~~~~~~~~CI~C--G~C~saCP~~~ 206 (230)
.+.+.....|+.| .-|+.+||...
T Consensus 33 ~~~~~e~~rc~~c~~~~c~~~cp~~~ 58 (457)
T PRK11749 33 EEAIEEASRCLQCKDAPCVKACPVSI 58 (457)
T ss_pred HHHHHHHHHhhCCCCCcccccCCCcC
Confidence 3466678999999 78999999974
No 316
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=29.35 E-value=18 Score=36.34 Aligned_cols=17 Identities=35% Similarity=0.876 Sum_probs=14.7
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...||.|+.|+.+||.-
T Consensus 84 ~~~C~~C~~C~~~CP~~ 100 (654)
T PRK12769 84 QQKCIGCKSCVVACPFG 100 (654)
T ss_pred cccccCcChhcccCCcc
Confidence 45899999999999964
No 317
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=28.97 E-value=19 Score=35.94 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=14.9
Q ss_pred HHhhhhchhhhcccCcc
Q 026956 190 YECILCACCSTSCPSYW 206 (230)
Q Consensus 190 ~~CI~CG~C~saCP~~~ 206 (230)
..||.||.|+.-||.-.
T Consensus 50 ~lCigcgicvkkcpf~a 66 (592)
T KOG0063|consen 50 ELCIGCGICVKKCPFEA 66 (592)
T ss_pred hhhccccceeeccCcce
Confidence 37999999999999864
No 318
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=27.79 E-value=24 Score=38.62 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=19.6
Q ss_pred HHHHhcHHHhhhhchhhh-cccCc
Q 026956 183 RAKLDGMYECILCACCST-SCPSY 205 (230)
Q Consensus 183 ~~~~~~~~~CI~CG~C~s-aCP~~ 205 (230)
++...+.+.|..|++|+. .||.+
T Consensus 683 rK~~Idqs~Cn~d~sC~~G~CPsF 706 (1186)
T PRK13029 683 RKRKINQSSCNKDFSCVKGFCPSF 706 (1186)
T ss_pred ccEEECHhHCCCccccccCCCCCc
Confidence 345567889999999999 99997
No 319
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=27.45 E-value=20 Score=31.98 Aligned_cols=17 Identities=29% Similarity=0.757 Sum_probs=14.9
Q ss_pred HHHhhhhchhhhcccCc
Q 026956 189 MYECILCACCSTSCPSY 205 (230)
Q Consensus 189 ~~~CI~CG~C~saCP~~ 205 (230)
...|+.|+.|..+||..
T Consensus 168 ~~~C~~C~~C~~~CP~~ 184 (263)
T PRK00783 168 SEDCDECEKCVEACPRG 184 (263)
T ss_pred cccCCchHHHHHhCCcc
Confidence 46899999999999974
No 320
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=27.30 E-value=2.2e+02 Score=20.62 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=33.7
Q ss_pred EEEeecCCChhHHHHHHHhhhccCCCcccccCcCC--CccCcceEEeCCeeecccc-ccccCCCCceEEeeCC
Q 026956 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE--GICGSCAMNIDGCNGLACL-TKISPSGSASTITPLP 137 (230)
Q Consensus 68 y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~--GiCGsCaV~ING~~~LAC~-t~v~~~~~~itIEPL~ 137 (230)
.++++ + +.||-+++..+.+.. |.+. ..-... ..=-.+.|.|||+.+..=. +.+.++.++.-+-|++
T Consensus 18 ~~v~~-~-~~tv~~l~~~l~~~~-p~~~-~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~Ppvs 86 (88)
T TIGR01687 18 EEIEI-E-GKTVGDLLNELMARY-PKEF-SELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIFPPVS 86 (88)
T ss_pred EEEEe-C-CCCHHHHHHHHHHHC-cHHH-HHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEeCCCc
Confidence 44554 3 579999999886443 2211 111100 0001268999998774321 3565543333344443
No 321
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=27.13 E-value=31 Score=35.38 Aligned_cols=21 Identities=24% Similarity=0.735 Sum_probs=16.1
Q ss_pred HHhcHHHhhhhchhhhcccCc
Q 026956 185 KLDGMYECILCACCSTSCPSY 205 (230)
Q Consensus 185 ~~~~~~~CI~CG~C~saCP~~ 205 (230)
.......|-.||-|.-+||.-
T Consensus 395 ~~e~a~kc~~cG~C~~~CP~~ 415 (772)
T COG1152 395 FMEYARKCTYCGNCMRACPNE 415 (772)
T ss_pred HHHHHHhcccccchhccCCcc
Confidence 344467899999999999853
No 322
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=26.61 E-value=27 Score=35.83 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=16.5
Q ss_pred HhhhhchhhhcccCcccCCCCC
Q 026956 191 ECILCACCSTSCPSYWWTSEAY 212 (230)
Q Consensus 191 ~CI~CG~C~saCP~~~~~~~~F 212 (230)
.|..||-|+.+||+.......|
T Consensus 186 ~~~~~G~cv~~CPvgAl~~k~~ 207 (687)
T PRK09130 186 TSELSGNVIDLCPVGALTSKPY 207 (687)
T ss_pred cccccccHHhhCCCcccccccc
Confidence 5678999999999986554433
No 323
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=26.47 E-value=23 Score=34.20 Aligned_cols=18 Identities=28% Similarity=0.676 Sum_probs=15.6
Q ss_pred cHHHhhhhchhhhcccCc
Q 026956 188 GMYECILCACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~~ 205 (230)
+...|+.||.|..+||..
T Consensus 270 d~~~C~~Cm~Ci~~~p~a 287 (402)
T TIGR02064 270 DNRECVRCMHCINKMPKA 287 (402)
T ss_pred cchhcCcCccccccCccc
Confidence 456899999999999974
No 324
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=26.46 E-value=21 Score=35.09 Aligned_cols=21 Identities=24% Similarity=0.627 Sum_probs=15.8
Q ss_pred HhcHHHhhhh------chhhhcccCcc
Q 026956 186 LDGMYECILC------ACCSTSCPSYW 206 (230)
Q Consensus 186 ~~~~~~CI~C------G~C~saCP~~~ 206 (230)
......|+.| +.|..+||...
T Consensus 500 ~~~~~rCl~C~~c~~C~~C~~~Cp~~a 526 (564)
T PRK12771 500 RQEAARCLSCGNCFECDNCYGACPQDA 526 (564)
T ss_pred hhhcccCcccccccccchhhhhCChhh
Confidence 3456677777 89999999864
No 325
>KOG4060 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.20 E-value=47 Score=28.41 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=26.5
Q ss_pred HHhhhhc-cccccccchhhhhh---------hhhhhhhhhccCCccCCC-CceEEEEEEe
Q 026956 6 IRRAISS-SAAVAQPARLLTAR---------FHASEAEAQKVEPKASAN-TDTKKFQIYR 54 (230)
Q Consensus 6 ~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~v~lkI~R 54 (230)
.||+.|+ +.+..+|.++|++- -|+++++..|-+.+-|++ ...++++|.-
T Consensus 2 lrr~~s~~~~i~sv~~~~ls~~R~t~gig~~~~~~~~~ePKf~~~re~~ey~~lNV~i~g 61 (176)
T KOG4060|consen 2 LRRRTSGEKPIYSVGGILLSISRKTHGIGKYKHLIKAEEPKFKKEREINEYGVLNVHITG 61 (176)
T ss_pred ccccccccceeeeccccceeeeeecccccccchhhhhhCCcccchhcccccceEEEEEEe
Confidence 3555554 34556677777653 366777666555544444 2344444433
No 326
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=25.79 E-value=21 Score=29.33 Aligned_cols=18 Identities=33% Similarity=0.713 Sum_probs=15.2
Q ss_pred HHHhhhhc---------hhhhcccCcc
Q 026956 189 MYECILCA---------CCSTSCPSYW 206 (230)
Q Consensus 189 ~~~CI~CG---------~C~saCP~~~ 206 (230)
...|++|| .|+.+||.-.
T Consensus 121 ~~kC~~C~~r~~~g~~p~Cv~~Cp~~A 147 (161)
T TIGR02951 121 MGKCDGCYDRVEKGLRPACVDACPMRA 147 (161)
T ss_pred cccCCCCHHHHHCCCCCcchhhccccc
Confidence 35899998 9999999853
No 327
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=25.75 E-value=29 Score=36.13 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=16.3
Q ss_pred HhhhhchhhhcccCcccCCCCC
Q 026956 191 ECILCACCSTSCPSYWWTSEAY 212 (230)
Q Consensus 191 ~CI~CG~C~saCP~~~~~~~~F 212 (230)
+|-.||-|+++||+....+..|
T Consensus 190 ~~~~~G~cv~vCP~GAl~~k~~ 211 (847)
T PRK08166 190 ESEFSGNLVEVCPTGVFTDKTH 211 (847)
T ss_pred cChhhCChHhhCCchhcccccc
Confidence 5668999999999986554444
No 328
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=24.60 E-value=2.3e+02 Score=19.51 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=27.9
Q ss_pred ChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeecc---ccccccCCCCceEEeeCC
Q 026956 76 GPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA---CLTKISPSGSASTITPLP 137 (230)
Q Consensus 76 ~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LA---C~t~v~~~~~~itIEPL~ 137 (230)
.+||.++|.++. +++ ...+|.+||+-+.- -.+.+.++.++--+.|..
T Consensus 14 ~~tl~~Ll~~l~--~~~-------------~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~V~ 63 (65)
T PRK06488 14 ATTLALLLAELD--YEG-------------NWLATAVNGELVHKEARAQFVLHEGDRIEILSPMQ 63 (65)
T ss_pred cCcHHHHHHHcC--CCC-------------CeEEEEECCEEcCHHHcCccccCCCCEEEEEEecc
Confidence 368999998864 221 12589999987642 245555554444444443
No 329
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=24.31 E-value=13 Score=34.14 Aligned_cols=23 Identities=35% Similarity=0.781 Sum_probs=19.1
Q ss_pred HHHhcHHHhhhhchhhhcccCcc
Q 026956 184 AKLDGMYECILCACCSTSCPSYW 206 (230)
Q Consensus 184 ~~~~~~~~CI~CG~C~saCP~~~ 206 (230)
-.+.+.+.||.|..|..||...+
T Consensus 23 ~~liD~~kCiGC~aC~~ACk~~n 45 (283)
T TIGR01582 23 AKLIDVSSCIGCKACQAACQEWN 45 (283)
T ss_pred EEEEEcCcCcChHHHHHHHHHHh
Confidence 44678899999999999997643
No 330
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=23.71 E-value=34 Score=34.40 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=18.9
Q ss_pred HHHhcHHHhhhhc---hhhhcccCcc
Q 026956 184 AKLDGMYECILCA---CCSTSCPSYW 206 (230)
Q Consensus 184 ~~~~~~~~CI~CG---~C~saCP~~~ 206 (230)
+.......|+.|| -|..+||...
T Consensus 219 ~a~~~~~rc~~C~~~~~C~~~CP~~~ 244 (654)
T PRK12769 219 QAQREASRCLKCGEHSICEWTCPLHN 244 (654)
T ss_pred HHHHHHHhhhcCCCCCCccccCCCCC
Confidence 3456788999998 4999999974
No 331
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=23.47 E-value=35 Score=35.03 Aligned_cols=17 Identities=35% Similarity=0.792 Sum_probs=14.8
Q ss_pred cHHHhhhhchhhhcccC
Q 026956 188 GMYECILCACCSTSCPS 204 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~ 204 (230)
....||.||.|-++||-
T Consensus 436 l~d~C~~C~rCEq~Cpk 452 (772)
T COG1152 436 LHDVCIGCGRCEQVCPK 452 (772)
T ss_pred HHHHhhhhhhhhhhCcc
Confidence 35689999999999994
No 332
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=23.41 E-value=28 Score=31.13 Aligned_cols=17 Identities=35% Similarity=1.159 Sum_probs=14.8
Q ss_pred cHHHhhhhchhhhcccC
Q 026956 188 GMYECILCACCSTSCPS 204 (230)
Q Consensus 188 ~~~~CI~CG~C~saCP~ 204 (230)
+...|+.|+.|..+||.
T Consensus 197 ~~~~C~~C~~Ci~~CP~ 213 (263)
T PRK00783 197 DLLNCSLCKLCERACPG 213 (263)
T ss_pred ChhhCCCchHHHHhCCC
Confidence 45579999999999995
No 333
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=23.09 E-value=45 Score=32.01 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=18.8
Q ss_pred HHHhcHHHhhhhch--hhhcccCcc
Q 026956 184 AKLDGMYECILCAC--CSTSCPSYW 206 (230)
Q Consensus 184 ~~~~~~~~CI~CG~--C~saCP~~~ 206 (230)
+.......|+.|+. |+.+||...
T Consensus 38 ~~~~~a~rc~~c~~~~C~~~CP~~~ 62 (471)
T PRK12810 38 QAKIQAARCMDCGIPFCHWGCPVHN 62 (471)
T ss_pred HHHHHHHhccCCCCCcccccCCCCC
Confidence 35566789999977 999999974
No 334
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=22.70 E-value=2.2e+02 Score=21.30 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=37.1
Q ss_pred eEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEEeCCeeeccccccccCCCCceEEeeCC
Q 026956 65 LKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPLP 137 (230)
Q Consensus 65 ~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ING~~~LAC~t~v~~~~~~itIEPL~ 137 (230)
...+.++..+ +.||-|++..++ .|.-.. =.|.|||+++-- ...+. .|+.+.|.|..
T Consensus 22 ~~~~~~~~~~-~~tvkd~IEsLG---VP~tEV-----------~~i~vNG~~v~~-~~~~~-~Gd~v~V~P~~ 77 (81)
T PF14451_consen 22 GGPFTHPFDG-GATVKDVIESLG---VPHTEV-----------GLILVNGRPVDF-DYRLK-DGDRVAVYPVF 77 (81)
T ss_pred CCceEEecCC-CCcHHHHHHHcC---CChHHe-----------EEEEECCEECCC-cccCC-CCCEEEEEecc
Confidence 3566777776 899999999876 221111 168999998744 22333 46788888863
No 335
>COG1984 DUR1 Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
Probab=22.49 E-value=62 Score=30.48 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=37.6
Q ss_pred CCcccccCcCCCccC-cceEEeCCeeeccccccccCCCCceEEeeCC
Q 026956 92 PSLTFRRSCREGICG-SCAMNIDGCNGLACLTKISPSGSASTITPLP 137 (230)
Q Consensus 92 ~~l~fr~gCr~GiCG-sCaV~ING~~~LAC~t~v~~~~~~itIEPL~ 137 (230)
+++-|....--.++| -|.+.+||+++..+.....+.++++++.+..
T Consensus 59 ~t~~f~~~~~ialTGad~~a~ld~~~i~~~~~~~vk~Gq~L~~g~~~ 105 (314)
T COG1984 59 PTLEFTSDALIALTGADCEATLDGQEVPPWSPYLVKAGQTLKLGRPK 105 (314)
T ss_pred eEEEEecCcEEEEeCCcccceECCEEcCCCceEEccCCCEEEecCCC
Confidence 556677777778888 7999999999999988877667888888775
No 336
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=22.01 E-value=34 Score=27.11 Aligned_cols=22 Identities=23% Similarity=0.804 Sum_probs=13.7
Q ss_pred HHhcHHHhhhh--chhhhcccCcc
Q 026956 185 KLDGMYECILC--ACCSTSCPSYW 206 (230)
Q Consensus 185 ~~~~~~~CI~C--G~C~saCP~~~ 206 (230)
.+.....|+.| .-|..+||.-.
T Consensus 17 ~~~ea~rC~~c~~~pC~~aCP~~~ 40 (111)
T PF14691_consen 17 AIEEASRCLQCEDPPCQAACPAHI 40 (111)
T ss_dssp HHHHHHHS---TT-HHHHTSTT--
T ss_pred HHHHHhhccCCCCCCcccCCCCCC
Confidence 45568899999 69999999973
No 337
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=21.74 E-value=2.4e+02 Score=23.77 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=35.7
Q ss_pred CCCCCCCCceEEEEEeecCCChhHHHHHHHhhhccCCCcccccCcCCCccCcceEE
Q 026956 56 NPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMN 111 (230)
Q Consensus 56 dp~~d~~~~~~~y~v~v~~~~~TvLdaL~~i~~~~d~~l~fr~gCr~GiCGsCaV~ 111 (230)
||..+...+.+...|.+++.-.++-++|.......||+-.-+-|+..|.==.-+|.
T Consensus 38 ~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~~hdPt~~~~Qg~D~G~QYRS~If 93 (156)
T PRK05528 38 TLDGPYDGYAECVKTHFDPRMVSITDLMGYLFEIIDPYSVNKQGNDVGEKYRTGIY 93 (156)
T ss_pred CCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHHhCCcccccccCCCCCCCceEEEE
Confidence 45556678999999999884445555555444467887766666665433334443
No 338
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=21.64 E-value=30 Score=28.97 Aligned_cols=29 Identities=24% Similarity=0.573 Sum_probs=20.8
Q ss_pred HHHhhhhc------hhhhcccCcccCCCCCcCHHHHHH
Q 026956 189 MYECILCA------CCSTSCPSYWWTSEAYLGPAALLH 220 (230)
Q Consensus 189 ~~~CI~CG------~C~saCP~~~~~~~~FlGPaal~~ 220 (230)
...|.+|| .|+.+||.-.. .|.++.-+..
T Consensus 128 ~~kC~~C~~~~~~paCv~~CP~~Al---~~~~~~~~~~ 162 (181)
T PRK10330 128 ANKCDLCNHREDGPACMAACPTHAL---ICVDRNKLEQ 162 (181)
T ss_pred eeeCcCCCCCCCCccchhhCchhhE---EEeCHHHHHH
Confidence 35899999 99999998753 3555554443
No 339
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=21.49 E-value=97 Score=23.47 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=18.1
Q ss_pred EEEEeecCCChhHHHHHHHh--hhccCC
Q 026956 67 EFEINLKECGPMVLDALIKI--KSEIDP 92 (230)
Q Consensus 67 ~y~v~v~~~~~TvLdaL~~i--~~~~d~ 92 (230)
...|-+.+ +||++|+|..+ +.++||
T Consensus 11 ~~~v~vrp-~~tv~dvLe~aCk~~~ldp 37 (77)
T cd01818 11 PVLTYLRP-GMSVEDFLESACKRKQLDP 37 (77)
T ss_pred eEEEEECC-CCCHHHHHHHHHHhcCCCh
Confidence 34556667 99999999975 346676
No 340
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=20.85 E-value=34 Score=33.13 Aligned_cols=20 Identities=25% Similarity=0.477 Sum_probs=16.1
Q ss_pred hcHHHhhhhchhh--hcccCcc
Q 026956 187 DGMYECILCACCS--TSCPSYW 206 (230)
Q Consensus 187 ~~~~~CI~CG~C~--saCP~~~ 206 (230)
.+...|+.|+.|. .+||...
T Consensus 299 id~dkCi~Cg~C~~~~aCPt~A 320 (391)
T TIGR03287 299 YNPERCENCDPCLVEEACPVPA 320 (391)
T ss_pred EchhhCcCCCCCcCCcCCCHhh
Confidence 3456899999995 8999764
No 341
>PRK12831 putative oxidoreductase; Provisional
Probab=20.60 E-value=45 Score=32.14 Aligned_cols=23 Identities=22% Similarity=0.657 Sum_probs=19.6
Q ss_pred HHHhcHHHhhhhc--hhhhcccCcc
Q 026956 184 AKLDGMYECILCA--CCSTSCPSYW 206 (230)
Q Consensus 184 ~~~~~~~~CI~CG--~C~saCP~~~ 206 (230)
+.+.....|+.|+ -|..+||...
T Consensus 34 ~~~~ea~rc~~c~~~~C~~~CP~~~ 58 (464)
T PRK12831 34 EAVKEASRCLQCKKPKCVKGCPVSI 58 (464)
T ss_pred HHHHHHHhhcCCCCCchhhhCCCCC
Confidence 4577899999999 5999999974
No 342
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=20.40 E-value=34 Score=30.08 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=17.1
Q ss_pred hcHHHhhhhchhhhcccCcc
Q 026956 187 DGMYECILCACCSTSCPSYW 206 (230)
Q Consensus 187 ~~~~~CI~CG~C~saCP~~~ 206 (230)
.+-+.||.|--|.++||+-.
T Consensus 112 i~e~~ciGCtkCiqaCpvdA 131 (198)
T COG2878 112 IDEANCIGCTKCIQACPVDA 131 (198)
T ss_pred ecchhccccHHHHHhCChhh
Confidence 44579999999999999964
No 343
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=20.03 E-value=36 Score=34.08 Aligned_cols=19 Identities=32% Similarity=0.742 Sum_probs=16.1
Q ss_pred cHHHhhhhchhhh--cccCcc
Q 026956 188 GMYECILCACCST--SCPSYW 206 (230)
Q Consensus 188 ~~~~CI~CG~C~s--aCP~~~ 206 (230)
+...|+.||.|.. +||...
T Consensus 548 d~~~C~~C~~C~~~~~CP~~~ 568 (595)
T TIGR03336 548 DQDKCIGCKKCIKELGCPAIE 568 (595)
T ss_pred cCCcCCCccccccccCCCCcc
Confidence 3569999999999 999753
No 344
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=20.01 E-value=39 Score=31.88 Aligned_cols=18 Identities=33% Similarity=0.886 Sum_probs=15.6
Q ss_pred cHHHhhhh---------chhhhcccCc
Q 026956 188 GMYECILC---------ACCSTSCPSY 205 (230)
Q Consensus 188 ~~~~CI~C---------G~C~saCP~~ 205 (230)
....|+.| ..|+.+||..
T Consensus 187 ~~eKC~~C~~Rie~G~~PaCv~aCP~~ 213 (321)
T TIGR03478 187 KSEKCIGCYPRIEKGIAPACVKQCPGR 213 (321)
T ss_pred chhhCCCchhhhccCCCCHHHhhcCcc
Confidence 35699999 8999999975
Done!