Query 026957
Match_columns 230
No_of_seqs 280 out of 2388
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:00:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 2.4E-20 5.2E-25 128.6 9.7 97 56-152 7-103 (103)
2 cd01802 AN1_N ubiquitin-like d 99.8 2.9E-20 6.4E-25 128.2 9.8 95 134-228 9-103 (103)
3 cd01807 GDX_N ubiquitin-like d 99.8 1.9E-20 4.2E-25 122.3 7.4 73 1-73 1-73 (74)
4 PTZ00044 ubiquitin; Provisiona 99.8 1.8E-19 4E-24 118.4 7.8 74 1-74 1-74 (76)
5 cd01797 NIRF_N amino-terminal 99.8 2E-19 4.3E-24 118.1 7.2 75 1-75 1-77 (78)
6 cd01793 Fubi Fubi ubiquitin-li 99.8 2.4E-19 5.2E-24 117.1 7.6 72 1-74 1-72 (74)
7 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 7.9E-19 1.7E-23 113.5 7.2 71 1-71 2-72 (73)
8 cd01803 Ubiquitin Ubiquitin. U 99.8 1.9E-18 4.1E-23 113.6 7.7 74 1-74 1-74 (76)
9 cd01793 Fubi Fubi ubiquitin-li 99.8 2.3E-18 5E-23 112.4 7.8 74 153-228 1-74 (74)
10 cd01806 Nedd8 Nebb8-like ubiq 99.8 2.7E-18 5.8E-23 112.9 8.2 74 1-74 1-74 (76)
11 cd01810 ISG15_repeat2 ISG15 ub 99.8 1.7E-18 3.7E-23 113.0 7.0 72 3-74 1-72 (74)
12 cd01807 GDX_N ubiquitin-like d 99.8 2.3E-18 5E-23 112.4 7.1 73 77-149 1-73 (74)
13 cd01804 midnolin_N Ubiquitin-l 99.8 3E-18 6.5E-23 112.8 7.5 74 1-75 2-75 (78)
14 cd01805 RAD23_N Ubiquitin-like 99.8 5.1E-18 1.1E-22 111.8 8.0 73 1-73 1-75 (77)
15 PTZ00044 ubiquitin; Provisiona 99.8 4.8E-18 1E-22 111.6 7.8 76 153-228 1-76 (76)
16 cd01794 DC_UbP_C dendritic cel 99.7 2.6E-18 5.7E-23 110.4 6.3 68 4-71 2-69 (70)
17 cd01809 Scythe_N Ubiquitin-lik 99.7 4.7E-18 1E-22 110.5 7.4 72 1-72 1-72 (72)
18 cd01810 ISG15_repeat2 ISG15 ub 99.7 4.7E-18 1E-22 110.9 7.2 74 155-228 1-74 (74)
19 cd01798 parkin_N amino-termina 99.7 4.3E-18 9.3E-23 110.0 6.4 70 3-72 1-70 (70)
20 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.3E-17 2.8E-22 109.6 8.3 76 153-228 1-76 (76)
21 cd01803 Ubiquitin Ubiquitin. U 99.7 1.2E-17 2.7E-22 109.7 7.8 76 153-228 1-76 (76)
22 cd01804 midnolin_N Ubiquitin-l 99.7 2.8E-17 6.1E-22 108.1 8.2 77 76-153 1-77 (78)
23 cd01797 NIRF_N amino-terminal 99.7 2.1E-17 4.4E-22 108.5 7.4 75 77-151 1-77 (78)
24 cd01792 ISG15_repeat1 ISG15 ub 99.7 2.4E-17 5.2E-22 109.1 7.0 73 1-73 3-77 (80)
25 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 4.3E-17 9.3E-22 105.4 7.6 70 77-146 2-71 (73)
26 KOG0005 Ubiquitin-like protein 99.7 1.2E-17 2.6E-22 99.0 4.2 70 1-70 1-70 (70)
27 PF00240 ubiquitin: Ubiquitin 99.7 4.5E-17 9.7E-22 105.0 7.1 68 6-73 1-68 (69)
28 cd01794 DC_UbP_C dendritic cel 99.7 4.7E-17 1E-21 104.6 6.7 68 80-147 2-69 (70)
29 cd01808 hPLIC_N Ubiquitin-like 99.7 6.6E-17 1.4E-21 104.6 7.1 71 1-72 1-71 (71)
30 cd01796 DDI1_N DNA damage indu 99.7 6.1E-17 1.3E-21 104.6 6.0 68 3-70 1-70 (71)
31 cd01798 parkin_N amino-termina 99.7 1E-16 2.3E-21 103.4 6.6 70 79-148 1-70 (70)
32 cd01805 RAD23_N Ubiquitin-like 99.7 2.1E-16 4.5E-21 104.1 7.8 73 77-149 1-75 (77)
33 KOG0003 Ubiquitin/60s ribosoma 99.7 9.6E-18 2.1E-22 111.6 1.4 74 1-74 1-74 (128)
34 PF00240 ubiquitin: Ubiquitin 99.7 2.4E-16 5.1E-21 101.6 7.2 69 158-226 1-69 (69)
35 cd01812 BAG1_N Ubiquitin-like 99.7 2.6E-16 5.6E-21 102.0 6.8 70 1-71 1-70 (71)
36 cd01800 SF3a120_C Ubiquitin-li 99.7 2.2E-16 4.8E-21 103.5 6.5 70 160-229 5-74 (76)
37 cd01809 Scythe_N Ubiquitin-lik 99.7 3.3E-16 7.1E-21 101.8 7.2 72 77-148 1-72 (72)
38 KOG0004 Ubiquitin/40S ribosoma 99.7 6.2E-17 1.3E-21 115.8 3.9 75 1-75 1-75 (156)
39 cd01800 SF3a120_C Ubiquitin-li 99.7 2.8E-16 6.1E-21 103.0 6.2 67 8-74 5-71 (76)
40 cd01792 ISG15_repeat1 ISG15 ub 99.6 6.1E-16 1.3E-20 102.4 7.7 73 77-149 3-77 (80)
41 cd01763 Sumo Small ubiquitin-r 99.6 1.4E-15 3E-20 102.2 8.7 77 152-228 11-87 (87)
42 cd01813 UBP_N UBP ubiquitin pr 99.6 7.9E-16 1.7E-20 100.0 6.9 69 1-70 1-72 (74)
43 cd01790 Herp_N Homocysteine-re 99.6 9.3E-16 2E-20 99.6 6.1 70 1-70 2-77 (79)
44 cd01808 hPLIC_N Ubiquitin-like 99.6 1.3E-15 2.9E-20 98.5 6.8 71 77-148 1-71 (71)
45 KOG0005 Ubiquitin-like protein 99.6 9.9E-16 2.1E-20 90.9 4.4 70 77-146 1-70 (70)
46 cd01796 DDI1_N DNA damage indu 99.6 2.3E-15 4.9E-20 97.2 6.5 68 79-146 1-70 (71)
47 KOG0003 Ubiquitin/60s ribosoma 99.6 1.2E-16 2.7E-21 106.3 0.1 77 153-229 1-77 (128)
48 cd01812 BAG1_N Ubiquitin-like 99.6 8.6E-15 1.9E-19 94.8 7.2 69 77-146 1-69 (71)
49 smart00213 UBQ Ubiquitin homol 99.6 6.6E-15 1.4E-19 93.2 6.5 64 1-65 1-64 (64)
50 cd01763 Sumo Small ubiquitin-r 99.6 2E-14 4.4E-19 96.5 8.8 79 74-152 9-87 (87)
51 cd01790 Herp_N Homocysteine-re 99.6 1.2E-14 2.7E-19 94.4 7.3 71 77-147 2-78 (79)
52 cd01813 UBP_N UBP ubiquitin pr 99.5 1.3E-14 2.7E-19 94.3 6.4 68 154-222 2-72 (74)
53 cd01799 Hoil1_N Ubiquitin-like 99.5 1.3E-14 2.8E-19 94.3 5.8 65 6-71 8-74 (75)
54 KOG0004 Ubiquitin/40S ribosoma 99.5 7.5E-15 1.6E-19 105.2 4.4 77 153-229 1-77 (156)
55 TIGR00601 rad23 UV excision re 99.5 6.5E-14 1.4E-18 117.4 7.5 73 1-73 1-76 (378)
56 cd01795 USP48_C USP ubiquitin- 99.5 1.3E-13 2.9E-18 91.3 5.5 62 12-73 16-78 (107)
57 smart00213 UBQ Ubiquitin homol 99.4 2.6E-13 5.6E-18 85.8 6.3 64 77-141 1-64 (64)
58 cd01799 Hoil1_N Ubiquitin-like 99.4 4.4E-13 9.5E-18 87.1 6.7 64 83-147 9-74 (75)
59 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 3.7E-13 8.1E-18 86.2 4.2 55 17-71 16-74 (75)
60 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 6E-13 1.3E-17 85.3 5.0 53 95-147 19-74 (75)
61 cd01769 UBL Ubiquitin-like dom 99.4 1.4E-12 3E-17 83.7 6.6 67 5-71 2-68 (69)
62 TIGR00601 rad23 UV excision re 99.4 1.3E-12 2.9E-17 109.5 7.5 74 77-150 1-77 (378)
63 cd01814 NTGP5 Ubiquitin-like N 99.4 5.5E-13 1.2E-17 91.2 4.0 73 2-74 6-92 (113)
64 cd01814 NTGP5 Ubiquitin-like N 99.4 1.4E-12 3E-17 89.2 5.4 77 75-151 3-93 (113)
65 cd01769 UBL Ubiquitin-like dom 99.3 8.4E-12 1.8E-16 80.0 7.0 67 81-147 2-68 (69)
66 PF11976 Rad60-SLD: Ubiquitin- 99.3 6.1E-12 1.3E-16 81.5 6.3 71 1-71 1-72 (72)
67 cd01795 USP48_C USP ubiquitin- 99.3 7.8E-12 1.7E-16 82.9 5.8 61 88-148 16-77 (107)
68 PF11976 Rad60-SLD: Ubiquitin- 99.3 1.7E-11 3.8E-16 79.4 7.3 71 77-147 1-72 (72)
69 KOG0011 Nucleotide excision re 99.2 1.3E-11 2.8E-16 99.1 6.2 74 1-74 1-76 (340)
70 KOG0010 Ubiquitin-like protein 99.2 1.7E-11 3.6E-16 103.5 6.6 74 76-150 15-88 (493)
71 KOG0010 Ubiquitin-like protein 99.2 1.1E-11 2.4E-16 104.5 5.6 73 1-74 16-88 (493)
72 cd01789 Alp11_N Ubiquitin-like 99.2 7.5E-11 1.6E-15 78.5 7.1 70 2-71 3-80 (84)
73 cd01788 ElonginB Ubiquitin-lik 99.2 8.7E-11 1.9E-15 80.0 6.4 71 160-230 9-86 (119)
74 PF14560 Ubiquitin_2: Ubiquiti 99.1 3.3E-10 7.2E-15 76.1 7.3 70 2-71 3-82 (87)
75 cd01788 ElonginB Ubiquitin-lik 99.1 4.9E-10 1.1E-14 76.3 6.2 72 1-72 1-80 (119)
76 KOG0011 Nucleotide excision re 99.1 4.2E-10 9E-15 90.5 6.7 74 77-150 1-76 (340)
77 cd01789 Alp11_N Ubiquitin-like 99.0 1.1E-09 2.3E-14 73.0 7.3 61 163-223 13-80 (84)
78 cd01811 OASL_repeat1 2'-5' oli 99.0 2E-09 4.4E-14 67.3 7.0 72 1-73 1-77 (80)
79 KOG0001 Ubiquitin and ubiquiti 99.0 3.1E-09 6.8E-14 68.5 7.6 72 3-74 2-73 (75)
80 PLN02560 enoyl-CoA reductase 99.0 1.6E-09 3.5E-14 89.0 7.3 69 1-69 1-80 (308)
81 PF14560 Ubiquitin_2: Ubiquiti 98.9 4.1E-09 8.9E-14 70.8 7.1 68 155-222 4-81 (87)
82 PF13881 Rad60-SLD_2: Ubiquiti 98.9 7.9E-09 1.7E-13 72.0 7.1 75 76-150 2-90 (111)
83 KOG0001 Ubiquitin and ubiquiti 98.8 3.9E-08 8.4E-13 63.3 8.6 73 155-227 2-74 (75)
84 KOG4248 Ubiquitin-like protein 98.8 5.1E-09 1.1E-13 95.2 5.5 74 2-76 4-77 (1143)
85 PLN02560 enoyl-CoA reductase 98.7 3.1E-08 6.7E-13 81.4 7.5 70 77-146 1-81 (308)
86 KOG4248 Ubiquitin-like protein 98.7 2E-08 4.4E-13 91.4 5.6 74 78-152 4-77 (1143)
87 PF13881 Rad60-SLD_2: Ubiquiti 98.7 9E-08 2E-12 66.7 7.4 72 2-73 4-89 (111)
88 cd01801 Tsc13_N Ubiquitin-like 98.7 6.6E-08 1.4E-12 63.3 5.9 68 2-69 2-74 (77)
89 PF11543 UN_NPL4: Nuclear pore 98.6 8.9E-08 1.9E-12 62.9 6.1 69 1-70 5-78 (80)
90 KOG1769 Ubiquitin-like protein 98.6 3.4E-07 7.3E-12 61.2 8.5 77 153-229 21-97 (99)
91 cd01801 Tsc13_N Ubiquitin-like 98.6 2E-07 4.4E-12 61.0 6.4 52 94-145 20-74 (77)
92 cd00196 UBQ Ubiquitin-like pro 98.5 5E-07 1.1E-11 55.9 6.3 67 5-71 2-68 (69)
93 PF11543 UN_NPL4: Nuclear pore 98.5 2.2E-07 4.9E-12 60.9 4.7 70 152-222 4-78 (80)
94 KOG0006 E3 ubiquitin-protein l 98.4 5.8E-07 1.3E-11 72.1 6.1 73 1-73 1-77 (446)
95 cd00196 UBQ Ubiquitin-like pro 98.4 1.9E-06 4.1E-11 53.2 6.7 65 83-147 4-68 (69)
96 cd01811 OASL_repeat1 2'-5' oli 98.4 2.7E-06 5.8E-11 53.5 7.0 71 77-148 1-76 (80)
97 KOG1769 Ubiquitin-like protein 98.3 7.6E-06 1.6E-10 54.8 8.1 79 75-153 19-97 (99)
98 KOG3493 Ubiquitin-like protein 98.3 2.5E-07 5.4E-12 56.2 0.8 69 78-146 3-71 (73)
99 KOG4495 RNA polymerase II tran 98.3 1.7E-06 3.6E-11 57.0 4.5 64 1-64 1-67 (110)
100 KOG3493 Ubiquitin-like protein 98.1 8E-07 1.7E-11 54.1 0.9 68 156-223 5-72 (73)
101 PF11470 TUG-UBL1: GLUT4 regul 98.1 6.6E-06 1.4E-10 51.5 5.0 63 159-221 3-65 (65)
102 COG5227 SMT3 Ubiquitin-like pr 98.1 2.2E-06 4.8E-11 55.8 2.9 77 153-229 25-101 (103)
103 KOG1872 Ubiquitin-specific pro 98.1 4.3E-06 9.4E-11 70.8 5.3 70 3-73 6-76 (473)
104 KOG1872 Ubiquitin-specific pro 98.0 1.4E-05 3E-10 67.8 5.9 69 155-224 6-75 (473)
105 PF11470 TUG-UBL1: GLUT4 regul 97.9 6.7E-05 1.4E-09 47.0 6.0 63 83-145 3-65 (65)
106 KOG0006 E3 ubiquitin-protein l 97.8 2.3E-05 5E-10 63.1 4.5 63 87-149 14-77 (446)
107 KOG4495 RNA polymerase II tran 97.8 4.9E-05 1.1E-09 50.2 4.7 55 85-139 10-66 (110)
108 PF08817 YukD: WXG100 protein 97.5 0.00026 5.7E-09 46.4 5.3 67 155-221 5-78 (79)
109 PF08817 YukD: WXG100 protein 97.5 0.00031 6.8E-09 46.0 5.6 68 2-69 4-78 (79)
110 PF00789 UBX: UBX domain; Int 97.5 0.00095 2.1E-08 44.0 7.6 69 153-221 7-80 (82)
111 smart00166 UBX Domain present 97.4 0.00087 1.9E-08 44.0 6.7 69 153-221 5-78 (80)
112 smart00166 UBX Domain present 97.3 0.0019 4.2E-08 42.4 7.5 71 75-145 3-78 (80)
113 PF00789 UBX: UBX domain; Int 97.3 0.0021 4.5E-08 42.3 7.5 68 2-69 8-80 (82)
114 PF13019 Telomere_Sde2: Telome 97.3 0.0017 3.8E-08 47.9 7.6 64 1-64 1-72 (162)
115 PF13019 Telomere_Sde2: Telome 97.2 0.002 4.4E-08 47.6 7.6 76 153-228 1-88 (162)
116 cd01772 SAKS1_UBX SAKS1-like U 97.2 0.0024 5.3E-08 41.8 7.0 68 153-221 5-77 (79)
117 cd01767 UBX UBX (ubiquitin reg 97.1 0.0038 8.3E-08 40.6 7.2 67 153-221 3-74 (77)
118 COG5227 SMT3 Ubiquitin-like pr 97.1 0.0006 1.3E-08 44.6 3.0 72 76-147 24-95 (103)
119 cd01772 SAKS1_UBX SAKS1-like U 97.0 0.0047 1E-07 40.4 7.0 67 2-69 6-77 (79)
120 KOG0013 Uncharacterized conser 97.0 0.0011 2.4E-08 50.5 4.3 63 9-71 155-217 (231)
121 cd01773 Faf1_like1_UBX Faf1 ik 97.0 0.0066 1.4E-07 39.8 7.2 71 153-224 6-81 (82)
122 cd01770 p47_UBX p47-like ubiqu 96.9 0.0039 8.5E-08 40.8 6.1 67 153-219 5-75 (79)
123 PF10302 DUF2407: DUF2407 ubiq 96.9 0.0035 7.6E-08 42.6 5.8 50 89-138 14-67 (97)
124 cd01770 p47_UBX p47-like ubiqu 96.9 0.008 1.7E-07 39.3 7.3 67 76-142 4-74 (79)
125 cd01771 Faf1_UBX Faf1 UBX doma 96.9 0.0076 1.6E-07 39.5 7.2 70 152-222 4-78 (80)
126 KOG1639 Steroid reductase requ 96.9 0.0018 3.8E-08 50.8 4.7 69 1-69 1-76 (297)
127 cd01767 UBX UBX (ubiquitin reg 96.8 0.0074 1.6E-07 39.2 6.8 63 2-65 4-71 (77)
128 cd01774 Faf1_like2_UBX Faf1 ik 96.8 0.0096 2.1E-07 39.5 7.2 69 153-222 5-83 (85)
129 cd01774 Faf1_like2_UBX Faf1 ik 96.8 0.012 2.6E-07 39.1 7.5 70 75-145 3-82 (85)
130 COG5417 Uncharacterized small 96.7 0.013 2.8E-07 37.1 6.9 67 155-221 9-80 (81)
131 PF14533 USP7_C2: Ubiquitin-sp 96.7 0.014 3.1E-07 45.8 8.9 102 12-115 35-161 (213)
132 cd01773 Faf1_like1_UBX Faf1 ik 96.7 0.017 3.6E-07 37.9 7.4 71 76-147 5-80 (82)
133 cd01771 Faf1_UBX Faf1 UBX doma 96.6 0.02 4.2E-07 37.6 7.6 70 76-146 4-78 (80)
134 PF10302 DUF2407: DUF2407 ubiq 96.6 0.0065 1.4E-07 41.3 5.4 59 3-61 3-66 (97)
135 PRK06437 hypothetical protein; 96.4 0.039 8.5E-07 34.8 7.6 59 161-228 9-67 (67)
136 PF10790 DUF2604: Protein of U 96.3 0.018 3.9E-07 35.3 5.3 66 161-226 4-73 (76)
137 COG5417 Uncharacterized small 96.2 0.026 5.6E-07 35.7 5.9 67 79-145 9-80 (81)
138 KOG3206 Alpha-tubulin folding 96.1 0.02 4.4E-07 43.7 6.2 62 89-150 15-83 (234)
139 KOG0013 Uncharacterized conser 96.1 0.012 2.6E-07 45.1 4.7 62 85-146 155-216 (231)
140 PF14836 Ubiquitin_3: Ubiquiti 96.0 0.05 1.1E-06 36.1 6.9 67 163-230 14-86 (88)
141 KOG1639 Steroid reductase requ 95.9 0.026 5.6E-07 44.5 5.9 69 77-145 1-76 (297)
142 PF12436 USP7_ICP0_bdg: ICP0-b 95.5 0.081 1.8E-06 42.6 7.8 119 2-120 70-223 (249)
143 PF15044 CLU_N: Mitochondrial 95.5 0.03 6.6E-07 36.3 4.3 57 169-225 1-59 (76)
144 PRK06437 hypothetical protein; 95.4 0.13 2.7E-06 32.5 6.8 62 1-71 1-62 (67)
145 PF09379 FERM_N: FERM N-termin 95.1 0.17 3.6E-06 32.8 7.0 58 5-62 1-65 (80)
146 PF09379 FERM_N: FERM N-termin 95.1 0.15 3.2E-06 33.1 6.8 67 157-223 1-76 (80)
147 PF11620 GABP-alpha: GA-bindin 95.0 0.077 1.7E-06 34.7 4.9 61 12-72 4-64 (88)
148 PF12436 USP7_ICP0_bdg: ICP0-b 95.0 0.18 3.9E-06 40.6 8.3 107 90-196 88-223 (249)
149 PF14533 USP7_C2: Ubiquitin-sp 94.9 0.19 4.2E-06 39.4 8.0 102 87-190 34-160 (213)
150 cd06406 PB1_P67 A PB1 domain i 94.8 0.15 3.3E-06 33.1 5.9 38 88-125 12-49 (80)
151 KOG3206 Alpha-tubulin folding 94.7 0.074 1.6E-06 40.8 4.8 59 165-223 15-80 (234)
152 cd06406 PB1_P67 A PB1 domain i 94.3 0.18 4E-06 32.8 5.5 36 12-47 12-47 (80)
153 cd06409 PB1_MUG70 The MUG70 pr 94.3 0.16 3.5E-06 33.6 5.2 45 79-123 3-50 (86)
154 PF14836 Ubiquitin_3: Ubiquiti 94.2 0.26 5.7E-06 32.7 6.1 64 87-151 14-83 (88)
155 cd00754 MoaD Ubiquitin domain 94.2 0.18 3.9E-06 32.6 5.5 60 164-228 17-80 (80)
156 PF15044 CLU_N: Mitochondrial 94.2 0.12 2.5E-06 33.5 4.4 56 93-148 1-58 (76)
157 PF11620 GABP-alpha: GA-bindin 94.1 0.26 5.6E-06 32.3 5.8 60 165-224 5-64 (88)
158 PRK08364 sulfur carrier protei 94.0 0.77 1.7E-05 29.1 8.0 56 164-228 15-70 (70)
159 cd00565 ThiS ThiaminS ubiquiti 93.8 0.38 8.2E-06 29.9 6.2 57 167-228 9-65 (65)
160 cd06407 PB1_NLP A PB1 domain i 93.7 0.33 7.2E-06 31.9 6.0 45 1-46 1-46 (82)
161 PF10790 DUF2604: Protein of U 93.6 0.32 7E-06 29.9 5.3 65 84-148 3-71 (76)
162 cd06409 PB1_MUG70 The MUG70 pr 93.5 0.34 7.3E-06 32.1 5.7 43 3-45 3-48 (86)
163 TIGR01683 thiS thiamine biosyn 93.3 0.53 1.2E-05 29.2 6.3 61 161-228 4-64 (64)
164 cd00754 MoaD Ubiquitin domain 93.3 0.26 5.6E-06 31.9 5.0 60 88-152 17-80 (80)
165 cd01760 RBD Ubiquitin-like dom 93.2 0.44 9.5E-06 30.5 5.7 45 155-199 2-46 (72)
166 PRK06488 sulfur carrier protei 93.2 0.59 1.3E-05 29.1 6.4 61 160-228 5-65 (65)
167 cd06407 PB1_NLP A PB1 domain i 93.2 0.43 9.4E-06 31.3 5.9 46 79-125 3-49 (82)
168 cd01760 RBD Ubiquitin-like dom 92.8 0.43 9.3E-06 30.5 5.2 45 3-47 2-46 (72)
169 smart00666 PB1 PB1 domain. Pho 92.7 0.62 1.3E-05 30.2 6.2 44 2-46 3-46 (81)
170 smart00666 PB1 PB1 domain. Pho 92.4 0.84 1.8E-05 29.6 6.5 46 78-124 3-48 (81)
171 PRK06488 sulfur carrier protei 92.3 0.89 1.9E-05 28.2 6.3 61 1-72 1-61 (65)
172 PRK08364 sulfur carrier protei 91.8 1.4 2.9E-05 27.9 6.7 65 77-151 5-69 (70)
173 PF02597 ThiS: ThiS family; I 91.7 0.62 1.4E-05 29.8 5.2 63 164-228 13-77 (77)
174 KOG4583 Membrane-associated ER 91.6 0.08 1.7E-06 43.6 1.1 60 152-211 9-72 (391)
175 smart00455 RBD Raf-like Ras-bi 91.5 0.8 1.7E-05 29.1 5.3 44 4-47 3-46 (70)
176 smart00455 RBD Raf-like Ras-bi 91.3 0.58 1.2E-05 29.7 4.6 44 80-123 3-46 (70)
177 KOG2086 Protein tyrosine phosp 90.9 0.55 1.2E-05 39.6 5.2 69 75-143 304-376 (380)
178 PRK05863 sulfur carrier protei 90.7 1.3 2.8E-05 27.6 5.7 60 161-228 6-65 (65)
179 PRK07440 hypothetical protein; 90.7 1.6 3.4E-05 27.7 6.1 62 160-228 9-70 (70)
180 PRK06083 sulfur carrier protei 90.6 1.4 3E-05 29.1 6.0 62 160-228 23-84 (84)
181 PRK05659 sulfur carrier protei 90.4 1.8 3.8E-05 26.9 6.2 61 161-228 6-66 (66)
182 KOG4583 Membrane-associated ER 90.3 0.12 2.7E-06 42.5 1.0 62 77-138 10-75 (391)
183 cd06408 PB1_NoxR The PB1 domai 90.2 1.7 3.8E-05 28.7 6.2 42 4-46 4-46 (86)
184 KOG2982 Uncharacterized conser 90.2 0.67 1.5E-05 38.3 5.0 56 167-222 352-415 (418)
185 TIGR01682 moaD molybdopterin c 90.0 1.8 3.9E-05 28.0 6.3 60 164-228 17-80 (80)
186 PF02196 RBD: Raf-like Ras-bin 90.0 2.6 5.7E-05 26.8 6.8 45 3-47 3-47 (71)
187 KOG4250 TANK binding protein k 89.8 0.96 2.1E-05 41.3 6.1 43 7-49 321-363 (732)
188 PLN02799 Molybdopterin synthas 89.7 1.2 2.5E-05 29.1 5.1 60 87-151 19-81 (82)
189 PRK05659 sulfur carrier protei 89.7 2.5 5.4E-05 26.2 6.5 61 1-71 1-61 (66)
190 PRK07696 sulfur carrier protei 89.5 2.4 5.2E-05 26.6 6.3 61 161-228 6-67 (67)
191 PLN02799 Molybdopterin synthas 89.5 1.5 3.1E-05 28.6 5.5 61 163-228 19-82 (82)
192 PRK08053 sulfur carrier protei 89.4 2.8 6E-05 26.1 6.5 61 161-228 6-66 (66)
193 PF12754 Blt1: Cell-cycle cont 89.2 0.12 2.5E-06 42.4 0.0 62 77-138 79-160 (309)
194 KOG2689 Predicted ubiquitin re 89.1 0.93 2E-05 36.5 4.9 69 153-221 211-284 (290)
195 PF02196 RBD: Raf-like Ras-bin 88.9 1.6 3.4E-05 27.8 5.1 51 155-205 3-55 (71)
196 cd06408 PB1_NoxR The PB1 domai 88.8 2.9 6.3E-05 27.7 6.4 53 77-133 3-55 (86)
197 KOG4598 Putative ubiquitin-spe 88.7 1.8 3.8E-05 39.7 6.9 183 11-196 877-1105(1203)
198 cd00565 ThiS ThiaminS ubiquiti 88.6 1.5 3.2E-05 27.2 4.8 61 85-152 5-65 (65)
199 TIGR01682 moaD molybdopterin c 88.5 2.2 4.7E-05 27.7 5.8 60 88-152 17-80 (80)
200 PF02597 ThiS: ThiS family; I 88.4 0.91 2E-05 29.0 3.9 63 88-152 13-77 (77)
201 TIGR01687 moaD_arch MoaD famil 88.3 3.5 7.5E-05 27.2 6.8 61 164-228 17-88 (88)
202 COG2104 ThiS Sulfur transfer p 88.3 3.1 6.8E-05 26.2 6.1 58 166-228 11-68 (68)
203 smart00295 B41 Band 4.1 homolo 87.9 4.2 9.2E-05 31.1 8.1 73 152-224 3-83 (207)
204 TIGR01687 moaD_arch MoaD famil 87.9 2.8 6E-05 27.6 6.1 62 87-152 16-88 (88)
205 PRK08053 sulfur carrier protei 87.3 4.8 0.0001 25.0 6.6 61 1-71 1-61 (66)
206 smart00295 B41 Band 4.1 homolo 87.2 6.4 0.00014 30.1 8.8 63 76-138 3-72 (207)
207 PRK07696 sulfur carrier protei 87.2 3.5 7.6E-05 25.8 5.9 61 1-71 1-62 (67)
208 PF12754 Blt1: Cell-cycle cont 87.0 0.19 4.1E-06 41.2 0.0 57 172-228 103-181 (309)
209 KOG2086 Protein tyrosine phosp 86.9 1.2 2.7E-05 37.6 4.7 66 153-218 306-375 (380)
210 PF00564 PB1: PB1 domain; Int 86.5 3.6 7.7E-05 26.7 6.0 46 78-124 3-49 (84)
211 cd06410 PB1_UP2 Uncharacterize 86.3 3 6.4E-05 28.4 5.5 40 5-45 17-56 (97)
212 cd06411 PB1_p51 The PB1 domain 86.2 1.9 4E-05 27.9 4.2 36 11-46 7-42 (78)
213 TIGR01683 thiS thiamine biosyn 86.0 2.7 5.9E-05 25.9 4.9 61 85-152 4-64 (64)
214 PF14453 ThiS-like: ThiS-like 85.8 3.2 6.9E-05 25.2 4.9 53 1-69 1-53 (57)
215 KOG0012 DNA damage inducible p 85.6 1.5 3.2E-05 36.8 4.4 64 85-148 11-76 (380)
216 PRK05863 sulfur carrier protei 85.3 5.7 0.00012 24.6 6.2 59 85-151 6-64 (65)
217 cd05992 PB1 The PB1 domain is 85.1 2.9 6.3E-05 26.9 5.0 40 85-124 8-48 (81)
218 cd01817 RGS12_RBD Ubiquitin do 84.7 4.7 0.0001 25.8 5.5 44 5-48 4-47 (73)
219 PRK07440 hypothetical protein; 84.6 4.7 0.0001 25.5 5.6 56 9-71 10-65 (70)
220 cd06398 PB1_Joka2 The PB1 doma 84.5 9.8 0.00021 25.5 7.3 41 84-124 7-53 (91)
221 KOG4261 Talin [Cytoskeleton] 84.4 5.1 0.00011 37.1 7.6 108 86-196 12-129 (1003)
222 KOG0012 DNA damage inducible p 84.2 1.7 3.7E-05 36.4 4.2 73 1-73 1-77 (380)
223 PTZ00380 microtubule-associate 84.0 5.7 0.00012 28.1 6.2 74 74-147 25-104 (121)
224 PF00564 PB1: PB1 domain; Int 83.8 4.8 0.0001 26.0 5.7 43 3-46 4-47 (84)
225 PRK06944 sulfur carrier protei 83.4 8.2 0.00018 23.7 6.5 60 161-228 6-65 (65)
226 cd06396 PB1_NBR1 The PB1 domai 83.3 5.4 0.00012 26.1 5.4 39 83-123 6-46 (81)
227 cd01818 TIAM1_RBD Ubiquitin do 82.9 3.7 8.1E-05 26.3 4.4 41 156-196 3-43 (77)
228 cd06411 PB1_p51 The PB1 domain 82.8 3.1 6.8E-05 26.9 4.1 36 88-123 8-43 (78)
229 PRK06083 sulfur carrier protei 82.7 6.8 0.00015 25.8 5.9 60 85-151 24-83 (84)
230 cd05992 PB1 The PB1 domain is 82.4 5.9 0.00013 25.4 5.6 44 2-46 2-46 (81)
231 KOG2982 Uncharacterized conser 82.4 1.9 4.1E-05 35.7 3.8 56 91-146 352-415 (418)
232 PF10209 DUF2340: Uncharacteri 82.1 2.5 5.5E-05 29.8 3.8 55 17-71 22-107 (122)
233 cd01787 GRB7_RA RA (RAS-associ 81.7 10 0.00022 25.1 6.3 59 77-135 3-68 (85)
234 PRK11840 bifunctional sulfur c 81.5 6.8 0.00015 32.7 6.7 63 161-230 6-68 (326)
235 TIGR02958 sec_mycoba_snm4 secr 81.4 8.1 0.00018 34.0 7.6 71 78-149 4-81 (452)
236 PF10209 DUF2340: Uncharacteri 81.4 2.6 5.6E-05 29.8 3.7 56 169-224 22-108 (122)
237 KOG4250 TANK binding protein k 81.1 4.8 0.0001 37.0 6.1 43 83-125 321-363 (732)
238 cd06396 PB1_NBR1 The PB1 domai 80.9 8.1 0.00018 25.3 5.6 41 2-45 2-44 (81)
239 PTZ00380 microtubule-associate 80.9 2 4.4E-05 30.4 3.0 47 12-58 42-88 (121)
240 cd01817 RGS12_RBD Ubiquitin do 80.6 5.6 0.00012 25.4 4.7 44 81-124 4-47 (73)
241 PF14453 ThiS-like: ThiS-like 79.2 11 0.00023 22.9 5.4 48 166-224 9-56 (57)
242 TIGR02958 sec_mycoba_snm4 secr 78.5 9.9 0.00021 33.5 7.2 71 2-73 4-81 (452)
243 cd01787 GRB7_RA RA (RAS-associ 78.3 8.2 0.00018 25.5 5.1 39 3-41 5-43 (85)
244 KOG2689 Predicted ubiquitin re 78.0 8.1 0.00017 31.3 5.9 71 75-145 209-284 (290)
245 PF14732 UAE_UbL: Ubiquitin/SU 77.8 12 0.00027 24.7 5.9 56 167-222 2-67 (87)
246 cd06410 PB1_UP2 Uncharacterize 77.6 8.3 0.00018 26.2 5.1 40 81-121 17-56 (97)
247 cd01818 TIAM1_RBD Ubiquitin do 77.4 8.1 0.00018 24.8 4.7 40 81-120 4-43 (77)
248 PF14451 Ub-Mut7C: Mut7-C ubiq 76.4 9 0.00019 25.1 4.9 53 10-71 22-75 (81)
249 cd01775 CYR1_RA Ubiquitin doma 75.7 15 0.00032 24.9 5.8 42 79-120 5-47 (97)
250 PRK06944 sulfur carrier protei 75.4 16 0.00034 22.3 6.2 60 85-152 6-65 (65)
251 PF08337 Plexin_cytopl: Plexin 75.1 4.7 0.0001 36.1 4.3 65 162-226 201-291 (539)
252 cd01777 SNX27_RA Ubiquitin dom 74.8 8.6 0.00019 25.5 4.4 41 2-42 3-43 (87)
253 PF11069 DUF2870: Protein of u 72.9 5.8 0.00013 26.8 3.3 36 194-229 3-39 (98)
254 TIGR03636 L23_arch archaeal ri 72.8 7.1 0.00015 25.3 3.7 34 10-43 14-47 (77)
255 COG2104 ThiS Sulfur transfer p 72.5 21 0.00046 22.4 6.8 57 90-151 11-67 (68)
256 PRK05738 rplW 50S ribosomal pr 72.1 6.8 0.00015 26.3 3.6 40 10-49 20-60 (92)
257 cd06398 PB1_Joka2 The PB1 doma 72.1 15 0.00033 24.6 5.3 38 9-46 8-51 (91)
258 PF08337 Plexin_cytopl: Plexin 71.8 6.6 0.00014 35.2 4.4 65 86-150 201-291 (539)
259 PF14451 Ub-Mut7C: Mut7-C ubiq 71.6 15 0.00032 24.1 5.0 53 86-147 22-75 (81)
260 KOG4261 Talin [Cytoskeleton] 71.5 14 0.0003 34.5 6.4 101 10-113 12-121 (1003)
261 KOG3439 Protein conjugation fa 71.1 32 0.00069 23.9 6.6 47 88-134 46-94 (116)
262 PF10407 Cytokin_check_N: Cdc1 70.9 20 0.00044 22.9 5.4 67 11-82 3-70 (73)
263 PF02991 Atg8: Autophagy prote 70.1 19 0.00041 24.8 5.5 58 90-147 36-97 (104)
264 cd01777 SNX27_RA Ubiquitin dom 69.9 9.8 0.00021 25.2 3.8 40 153-192 2-41 (87)
265 PRK14548 50S ribosomal protein 69.8 9.3 0.0002 25.2 3.8 34 10-43 21-54 (84)
266 KOG4572 Predicted DNA-binding 69.6 8.5 0.00018 36.1 4.6 64 161-224 3-70 (1424)
267 cd01611 GABARAP Ubiquitin doma 68.9 29 0.00063 24.2 6.3 58 90-147 44-105 (112)
268 PF00276 Ribosomal_L23: Riboso 67.7 7.6 0.00017 26.0 3.1 39 11-49 21-60 (91)
269 KOG4598 Putative ubiquitin-spe 67.7 14 0.0003 34.2 5.5 96 88-185 878-991 (1203)
270 cd01766 Ufm1 Urm1-like ubiquit 66.1 31 0.00067 22.0 5.3 61 90-150 19-80 (82)
271 smart00314 RA Ras association 65.8 23 0.00049 23.3 5.2 29 10-38 15-43 (90)
272 cd01768 RA RA (Ras-associating 65.8 23 0.00049 23.0 5.2 35 86-120 12-48 (87)
273 PRK11840 bifunctional sulfur c 65.7 28 0.00061 29.2 6.6 63 1-73 1-63 (326)
274 PF02991 Atg8: Autophagy prote 65.5 15 0.00032 25.3 4.3 44 15-58 37-81 (104)
275 KOG3439 Protein conjugation fa 65.4 23 0.0005 24.5 5.0 36 12-47 46-81 (116)
276 KOG4572 Predicted DNA-binding 64.8 12 0.00026 35.1 4.6 62 85-146 3-68 (1424)
277 PF03671 Ufm1: Ubiquitin fold 64.5 29 0.00064 22.0 5.0 57 166-222 19-76 (76)
278 cd01764 Urm1 Urm1-like ubuitin 64.3 7.9 0.00017 26.1 2.7 57 91-152 23-94 (94)
279 PF00788 RA: Ras association ( 64.3 32 0.0007 22.3 5.8 26 12-37 18-43 (93)
280 KOG2561 Adaptor protein NUB1, 64.3 7.5 0.00016 33.8 3.1 59 89-147 52-110 (568)
281 PF02017 CIDE-N: CIDE-N domain 63.8 21 0.00047 23.1 4.5 49 21-72 21-71 (78)
282 COG0089 RplW Ribosomal protein 63.7 10 0.00022 25.5 3.1 34 10-43 21-54 (94)
283 cd01764 Urm1 Urm1-like ubuitin 63.5 14 0.00031 24.8 3.9 55 169-228 25-94 (94)
284 PF00788 RA: Ras association ( 62.5 25 0.00054 22.9 5.0 41 79-119 5-51 (93)
285 cd01766 Ufm1 Urm1-like ubiquit 62.5 38 0.00082 21.6 5.4 60 167-226 20-80 (82)
286 cd01611 GABARAP Ubiquitin doma 62.4 14 0.00031 25.8 3.7 43 15-57 45-88 (112)
287 PF02017 CIDE-N: CIDE-N domain 61.7 16 0.00034 23.7 3.6 47 173-221 21-69 (78)
288 KOG2507 Ubiquitin regulatory p 61.6 14 0.00029 32.0 4.1 77 151-227 313-394 (506)
289 CHL00030 rpl23 ribosomal prote 60.8 15 0.00032 24.8 3.5 35 9-43 18-52 (93)
290 PF09469 Cobl: Cordon-bleu ubi 59.8 4.3 9.3E-05 26.1 0.7 35 181-215 2-39 (79)
291 PRK01777 hypothetical protein; 59.7 47 0.001 22.4 5.8 62 1-71 4-75 (95)
292 COG5100 NPL4 Nuclear pore prot 59.4 33 0.00072 29.5 6.0 60 164-223 11-78 (571)
293 smart00144 PI3K_rbd PI3-kinase 59.1 56 0.0012 22.5 6.8 72 155-226 20-106 (108)
294 KOG2507 Ubiquitin regulatory p 58.4 33 0.00073 29.8 5.9 77 74-150 312-393 (506)
295 PF14732 UAE_UbL: Ubiquitin/SU 58.2 51 0.0011 21.7 6.6 52 20-71 8-68 (87)
296 PF14847 Ras_bdg_2: Ras-bindin 58.2 45 0.00098 23.0 5.6 36 3-38 3-38 (105)
297 PF00276 Ribosomal_L23: Riboso 57.8 13 0.00028 24.8 2.8 41 162-202 20-61 (91)
298 PF09469 Cobl: Cordon-bleu ubi 57.6 12 0.00027 24.1 2.5 35 105-139 2-39 (79)
299 smart00314 RA Ras association 57.5 43 0.00092 21.9 5.4 36 85-120 14-51 (90)
300 cd01775 CYR1_RA Ubiquitin doma 57.5 43 0.00093 22.7 5.2 42 155-196 5-47 (97)
301 PF11069 DUF2870: Protein of u 57.4 21 0.00045 24.2 3.7 30 118-148 3-32 (98)
302 cd01768 RA RA (Ras-associating 57.2 50 0.0011 21.3 5.8 28 10-37 12-39 (87)
303 PF02192 PI3K_p85B: PI3-kinase 57.0 16 0.00034 23.7 3.0 23 13-35 2-24 (78)
304 COG5100 NPL4 Nuclear pore prot 56.6 42 0.00091 28.9 6.1 69 78-147 2-78 (571)
305 PF08783 DWNN: DWNN domain; I 56.3 51 0.0011 21.1 5.3 36 89-124 12-50 (74)
306 smart00266 CAD Domains present 56.3 25 0.00054 22.6 3.7 47 173-221 19-67 (74)
307 PF03671 Ufm1: Ubiquitin fold 56.0 51 0.0011 21.0 5.1 57 89-145 18-75 (76)
308 PF08825 E2_bind: E2 binding d 55.7 43 0.00093 22.0 5.0 55 15-70 1-69 (84)
309 PRK11130 moaD molybdopterin sy 55.5 53 0.0012 21.1 6.2 52 172-228 25-81 (81)
310 smart00144 PI3K_rbd PI3-kinase 55.5 66 0.0014 22.2 7.6 73 77-149 18-105 (108)
311 cd01615 CIDE_N CIDE_N domain, 55.3 27 0.00058 22.7 3.8 47 173-221 21-69 (78)
312 cd01615 CIDE_N CIDE_N domain, 55.1 33 0.00072 22.3 4.2 49 21-72 21-71 (78)
313 KOG4146 Ubiquitin-like protein 54.8 62 0.0014 21.7 7.0 84 144-228 6-101 (101)
314 PRK08453 fliD flagellar cappin 54.2 53 0.0012 30.6 6.9 86 7-93 134-236 (673)
315 cd06539 CIDE_N_A CIDE_N domain 53.7 26 0.00056 22.7 3.6 48 173-222 21-70 (78)
316 cd06397 PB1_UP1 Uncharacterize 51.9 65 0.0014 21.0 6.0 55 84-138 7-66 (82)
317 PRK05738 rplW 50S ribosomal pr 51.1 31 0.00067 23.1 3.8 39 162-200 20-59 (92)
318 KOG0007 Splicing factor 3a, su 51.1 6.5 0.00014 33.3 0.6 50 83-132 289-339 (341)
319 cd01612 APG12_C Ubiquitin-like 50.1 41 0.0009 22.2 4.3 34 14-47 19-52 (87)
320 PF00794 PI3K_rbd: PI3-kinase 49.9 80 0.0017 21.5 7.0 72 76-147 16-101 (106)
321 smart00266 CAD Domains present 49.2 40 0.00086 21.6 3.9 37 21-57 19-57 (74)
322 smart00143 PI3K_p85B PI3-kinas 49.0 21 0.00046 23.1 2.6 23 13-35 2-24 (78)
323 cd01612 APG12_C Ubiquitin-like 48.5 58 0.0013 21.5 4.8 58 89-146 18-79 (87)
324 PRK12280 rplW 50S ribosomal pr 48.4 29 0.00062 25.9 3.6 40 9-48 21-61 (158)
325 PF14847 Ras_bdg_2: Ras-bindin 47.3 92 0.002 21.5 5.8 36 79-114 3-38 (105)
326 TIGR03636 L23_arch archaeal ri 45.9 26 0.00057 22.6 2.7 35 162-196 14-48 (77)
327 PF00794 PI3K_rbd: PI3-kinase 45.7 94 0.002 21.1 6.7 58 3-60 19-85 (106)
328 cd06397 PB1_UP1 Uncharacterize 44.6 61 0.0013 21.2 4.2 38 8-45 7-44 (82)
329 KOG4147 Uncharacterized conser 44.4 20 0.00043 24.7 2.0 51 20-70 33-111 (127)
330 PF09138 Urm1: Urm1 (Ubiquitin 43.9 20 0.00042 24.3 2.0 76 147-228 4-96 (96)
331 PF11834 DUF3354: Domain of un 43.5 25 0.00055 22.2 2.3 35 21-56 26-60 (69)
332 KOG1407 WD40 repeat protein [F 42.8 1.9E+02 0.0041 23.7 7.9 49 173-221 213-268 (313)
333 PTZ00191 60S ribosomal protein 42.6 41 0.0009 24.6 3.6 32 10-41 82-113 (145)
334 PF07933 DUF1681: Protein of u 41.9 1E+02 0.0022 23.0 5.7 93 54-147 64-158 (160)
335 PRK14548 50S ribosomal protein 40.5 45 0.00097 22.0 3.2 35 162-196 21-55 (84)
336 cd06536 CIDE_N_ICAD CIDE_N dom 39.8 57 0.0012 21.3 3.6 49 21-72 21-73 (80)
337 cd01776 Rin1_RA Ubiquitin doma 39.6 56 0.0012 21.4 3.5 43 12-54 15-62 (87)
338 COG0089 RplW Ribosomal protein 39.4 48 0.001 22.4 3.3 39 161-199 20-59 (94)
339 PLN02593 adrenodoxin-like ferr 39.3 1E+02 0.0022 21.5 5.2 34 1-38 1-34 (117)
340 KOG1364 Predicted ubiquitin re 38.0 28 0.00061 29.3 2.4 65 154-218 279-349 (356)
341 CHL00030 rpl23 ribosomal prote 37.8 47 0.001 22.3 3.1 38 162-199 19-57 (93)
342 KOG1364 Predicted ubiquitin re 37.1 57 0.0012 27.6 4.0 65 78-142 279-349 (356)
343 cd06537 CIDE_N_B CIDE_N domain 37.0 67 0.0015 21.0 3.5 47 173-222 21-69 (81)
344 cd06404 PB1_aPKC PB1 domain is 37.0 1.2E+02 0.0027 19.9 5.2 32 8-39 7-38 (83)
345 PF02824 TGS: TGS domain; Int 35.3 76 0.0016 19.1 3.5 50 3-56 1-50 (60)
346 KOG2561 Adaptor protein NUB1, 34.2 17 0.00037 31.7 0.6 56 16-71 55-110 (568)
347 cd06538 CIDE_N_FSP27 CIDE_N do 33.9 86 0.0019 20.4 3.7 48 21-72 21-70 (79)
348 PF02505 MCR_D: Methyl-coenzym 33.6 2E+02 0.0043 21.3 6.8 110 13-136 6-121 (153)
349 PF06622 SepQ: SepQ protein; 33.5 1.9E+02 0.0041 23.2 6.1 32 95-126 139-170 (305)
350 KOG0007 Splicing factor 3a, su 32.9 25 0.00054 29.7 1.4 49 160-208 290-339 (341)
351 PF08299 Bac_DnaA_C: Bacterial 32.3 19 0.00042 22.6 0.5 18 22-39 1-18 (70)
352 KOG2660 Locus-specific chromos 32.2 33 0.00071 28.6 1.9 47 165-211 166-214 (331)
353 cd01816 Raf_RBD Ubiquitin doma 31.6 1.4E+02 0.0031 19.1 4.4 43 155-197 2-44 (74)
354 KOG3391 Transcriptional co-rep 30.2 44 0.00096 24.1 2.1 27 124-150 112-138 (151)
355 cd05736 Ig2_Follistatin_like S 30.2 1.1E+02 0.0023 18.8 3.8 22 183-204 5-26 (76)
356 PF11816 DUF3337: Domain of un 30.1 1.3E+02 0.0028 25.3 5.3 63 165-227 250-330 (331)
357 COG1977 MoaD Molybdopterin con 29.9 1.1E+02 0.0024 19.9 3.8 54 171-228 26-84 (84)
358 cd05484 retropepsin_like_LTR_2 29.7 48 0.001 21.7 2.1 43 9-51 8-54 (91)
359 PF04023 FeoA: FeoA domain; I 29.4 1.3E+02 0.0029 18.5 4.2 36 130-166 26-61 (74)
360 TIGR03028 EpsE polysaccharide 29.3 2.9E+02 0.0063 21.9 12.1 162 56-221 58-234 (239)
361 KOG3391 Transcriptional co-rep 28.7 56 0.0012 23.6 2.3 28 198-225 110-137 (151)
362 PF13180 PDZ_2: PDZ domain; PD 28.5 1.6E+02 0.0034 18.6 5.2 42 107-148 27-70 (82)
363 TIGR00038 efp translation elon 28.0 1.3E+02 0.0028 23.0 4.4 19 75-93 106-124 (184)
364 PF08756 YfkB: YfkB-like domai 27.3 95 0.0021 22.6 3.3 82 20-103 12-100 (153)
365 KOG2660 Locus-specific chromos 26.3 64 0.0014 27.0 2.7 48 89-136 166-215 (331)
366 smart00760 Bac_DnaA_C Bacteria 26.3 36 0.00078 20.5 1.0 19 22-40 1-19 (60)
367 PF10787 YfmQ: Uncharacterised 26.2 2.6E+02 0.0057 20.4 6.2 91 91-181 19-123 (149)
368 PF04126 Cyclophil_like: Cyclo 26.0 67 0.0015 22.6 2.4 29 1-30 1-29 (120)
369 cd01666 TGS_DRG_C TGS_DRG_C: 24.8 1.6E+02 0.0034 18.8 3.8 34 1-34 2-38 (75)
370 PRK00529 elongation factor P; 24.7 1.8E+02 0.004 22.2 4.8 19 75-93 107-125 (186)
371 PRK09555 feoA ferrous iron tra 24.7 86 0.0019 20.0 2.5 24 206-229 24-47 (74)
372 PF07971 Glyco_hydro_92: Glyco 24.2 1.2E+02 0.0026 27.3 4.1 58 2-73 443-500 (502)
373 PRK12280 rplW 50S ribosomal pr 23.7 1.1E+02 0.0024 22.8 3.3 38 162-199 22-60 (158)
374 cd01782 AF6_RA_repeat1 Ubiquit 23.6 2.6E+02 0.0057 19.4 5.8 37 1-37 24-62 (112)
375 PF11816 DUF3337: Domain of un 22.8 3.5E+02 0.0075 22.8 6.5 60 90-149 251-328 (331)
376 PF09269 DUF1967: Domain of un 22.7 50 0.0011 20.7 1.1 17 205-221 46-62 (69)
377 KOG3938 RGS-GAIP interacting p 22.6 2.4E+02 0.0051 23.1 5.1 29 16-44 68-96 (334)
378 cd05874 Ig6_NrCAM Sixth immuno 22.5 1.9E+02 0.0042 18.0 4.0 21 183-203 5-25 (77)
379 PHA02090 hypothetical protein 21.4 16 0.00034 22.5 -1.3 39 6-44 33-71 (79)
380 PF09631 Sen15: Sen15 protein; 21.4 90 0.002 21.1 2.3 50 13-64 45-94 (101)
381 PRK08453 fliD flagellar cappin 21.3 3E+02 0.0065 25.9 6.1 86 84-169 135-236 (673)
382 TIGR03595 Obg_CgtA_exten Obg f 21.2 62 0.0013 20.3 1.3 18 205-222 46-63 (69)
383 cd05762 Ig8_MLCK Eighth immuno 21.0 1.8E+02 0.0038 19.3 3.7 19 187-205 26-44 (98)
384 cd02413 40S_S3_KH K homology R 21.0 2.5E+02 0.0054 18.2 4.6 27 18-44 47-73 (81)
385 PF06234 TmoB: Toluene-4-monoo 20.9 2.6E+02 0.0057 18.5 5.9 60 165-224 17-84 (85)
386 PTZ00490 Ferredoxin superfamil 20.7 1.7E+02 0.0036 21.4 3.7 31 73-103 32-62 (143)
387 PTZ00490 Ferredoxin superfamil 20.6 1.8E+02 0.0039 21.3 3.8 27 2-28 37-63 (143)
388 PF03931 Skp1_POZ: Skp1 family 20.6 85 0.0018 19.0 1.8 32 1-32 1-32 (62)
389 KOG3483 Uncharacterized conser 20.5 2.5E+02 0.0054 18.0 4.4 60 169-228 33-93 (94)
390 PF00550 PP-binding: Phosphopa 20.1 1.2E+02 0.0026 18.1 2.5 37 25-70 2-38 (67)
391 cd06405 PB1_Mekk2_3 The PB1 do 20.1 2.6E+02 0.0056 18.0 4.1 31 84-114 7-37 (79)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.84 E-value=2.4e-20 Score=128.65 Aligned_cols=97 Identities=43% Similarity=0.627 Sum_probs=91.2
Q ss_pred ccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhh
Q 026957 56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135 (230)
Q Consensus 56 l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~ 135 (230)
..-+++.+-+++|+.+++.+.|+|+|+..+|+.+.+++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy 86 (103)
T cd01802 7 PPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDY 86 (103)
T ss_pred CCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHc
Confidence 34566777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceEEEEEeecc
Q 026957 136 NIQKESTLHLVLRLRGG 152 (230)
Q Consensus 136 ~i~~~~~i~l~~~~~~~ 152 (230)
+|.++++|++.+++++|
T Consensus 87 ~I~~~stL~l~~~l~GG 103 (103)
T cd01802 87 NISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCCCEEEEEEecCCC
Confidence 99999999999988765
No 2
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.83 E-value=2.9e-20 Score=128.22 Aligned_cols=95 Identities=44% Similarity=0.647 Sum_probs=91.2
Q ss_pred hhccccCCceEEEEEeecceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCC
Q 026957 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213 (230)
Q Consensus 134 ~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i 213 (230)
-+++.+-+++++.+++.++|.++++...|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEecCC
Q 026957 214 QKESTLHLVLRLRGG 228 (230)
Q Consensus 214 ~~~~~i~~~~~~~~g 228 (230)
++|++|++.++++||
T Consensus 89 ~~~stL~l~~~l~GG 103 (103)
T cd01802 89 SEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCEEEEEEecCCC
Confidence 999999999999998
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.83 E-value=1.9e-20 Score=122.28 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.5
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.80 E-value=1.8e-19 Score=118.42 Aligned_cols=74 Identities=49% Similarity=0.785 Sum_probs=71.8
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++|+.++..
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 5
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.80 E-value=2e-19 Score=118.11 Aligned_cols=75 Identities=36% Similarity=0.618 Sum_probs=71.3
Q ss_pred CEEEEEcCCCcE-EEEE-ecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecC
Q 026957 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~-~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|++ +.++ +.+++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++.+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 899999999997 7895 89999999999999999999999999999999999999999999999999999988753
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.80 E-value=2.4e-19 Score=117.07 Aligned_cols=72 Identities=39% Similarity=0.574 Sum_probs=69.0
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+||+. +++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++|+.+++.
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLL 72 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 89999984 7999999999999999999999999999999999999999999999999999999999998764
No 7
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.78 E-value=7.9e-19 Score=113.51 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=68.6
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|+|++..|+.+.++++|++||++||++|++..|+|+++|+|.|.|+.|+|+.+|++||+.+++++||..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 8
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.76 E-value=1.9e-18 Score=113.60 Aligned_cols=74 Identities=96% Similarity=1.299 Sum_probs=71.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 9
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.76 E-value=2.3e-18 Score=112.41 Aligned_cols=74 Identities=41% Similarity=0.621 Sum_probs=69.7
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
|.++++. ++++.+++++++||+++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+++++++|++++|+.||
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 4577775 4789999999999999999999999999999999999999999999999999999999999999998
No 10
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.76 E-value=2.7e-18 Score=112.88 Aligned_cols=74 Identities=54% Similarity=0.931 Sum_probs=71.6
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+++++|+.++..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~ 74 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR 74 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998753
No 11
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.76 E-value=1.7e-18 Score=113.04 Aligned_cols=72 Identities=31% Similarity=0.575 Sum_probs=69.3
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|||+++.|+++++++++++||++||++|++..|+|+++|+|.|+|+.|+|+.+|++||+.+++++++.++..
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 689999999999999999999999999999999999999999999999999999999999999999987753
No 12
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.76 E-value=2.3e-18 Score=112.41 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=70.3
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEe
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (230)
|+|+|+..+|+.+.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++++++++++++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999874
No 13
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.76 E-value=3e-18 Score=112.76 Aligned_cols=74 Identities=24% Similarity=0.468 Sum_probs=70.6
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecC
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++..|+.+++++++++||++||++|++..|+|+++|+|.|.|+.|+|+ +|++||+.++++++++.....
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~ 75 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEA 75 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccc
Confidence 89999999999999999999999999999999999999999999999999999 999999999999999877643
No 14
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.75 E-value=5.1e-18 Score=111.81 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.3
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCC--CCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi--~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+ |+++|+|+|+|+.|+|+.+|++||+.+++++++.++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999987653
No 15
>PTZ00044 ubiquitin; Provisional
Probab=99.75 E-value=4.8e-18 Score=111.63 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=73.7
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
|.++++..+|+++.+++++++||.+||++|++..|+|++.|+|.|+|+.|+|+.+|++|++++|++|++.++++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999997
No 16
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.75 E-value=2.6e-18 Score=110.36 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.8
Q ss_pred EEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+..+|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+++++|+.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999875
No 17
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.75 E-value=4.7e-18 Score=110.54 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.6
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+|+.++|+++++++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+.+++++++..+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999998753
No 18
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.75 E-value=4.7e-18 Score=110.92 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=71.4
Q ss_pred EEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
|+++...|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++||++++++|++.+++.||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999987
No 19
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.74 E-value=4.3e-18 Score=109.97 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.5
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeee
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|++..|+++++++++++||++||++|++..|+|+.+|+|+|+|+.|+|+.+|++|++.+++++|++.+
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999998753
No 20
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.74 E-value=1.3e-17 Score=109.63 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=73.3
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
|.+.|+..+|+++.+++++++||.+||++|++..|+|++.|+|.|+|+.|+|+.+|++|++++|++|++.++.+||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999998
No 21
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.73 E-value=1.2e-17 Score=109.71 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.3
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
|.++++..+|+.+.+++++++||++||++|++.+|+|+++|+|.|+|+.|+|+.+|++|++++|++|++.+|++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999998
No 22
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.72 E-value=2.8e-17 Score=108.13 Aligned_cols=77 Identities=25% Similarity=0.483 Sum_probs=73.1
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecce
Q 026957 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.|+|+|+...|+.+.+++++++||++||++|+++.++|+++|+|.|.|+.|+|+ +|++||+.+|++|+++..+++|+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 378999999999999999999999999999999999999999999999999999 99999999999999999888774
No 23
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.72 E-value=2.1e-17 Score=108.53 Aligned_cols=75 Identities=36% Similarity=0.618 Sum_probs=70.3
Q ss_pred eeeEEEeccCee-Eeee-cCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeec
Q 026957 77 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 77 ~~v~v~~~~g~~-~~i~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
|+|+|++.+|+. +.++ +++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+.+|++|++++++.+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~ 77 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP 77 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 689999999987 6885 89999999999999999999999999999999999999999999999999999988753
No 24
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.71 E-value=2.4e-17 Score=109.14 Aligned_cols=73 Identities=32% Similarity=0.431 Sum_probs=69.9
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEE--EeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l--~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+| .|+|+.|+|+.+|++||+.+++++++.++.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999999999 788999999999999999999999998763
No 25
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.71 E-value=4.3e-17 Score=105.41 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=67.5
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEE
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (230)
|.|+|++..|+.+.+++++++||++||++|+++.++|+++|+|+|.|+.|+|+.+|++||+.+|++||+.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999985
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.2e-17 Score=98.98 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=68.2
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|+++.|+...++++|.++|..+|++|++..||||.+|+|.|.|+++.|+.+-++|++..||.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999874
No 27
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.70 E-value=4.5e-17 Score=104.97 Aligned_cols=68 Identities=56% Similarity=0.962 Sum_probs=65.5
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+++|+.+++++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++||+.++++|++.+++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999999998865
No 28
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.70 E-value=4.7e-17 Score=104.56 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.4
Q ss_pred EEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEE
Q 026957 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 80 ~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
+|+..+|+++.+++++++||+++|++|++..|+|+++|+|+|+|+.|+|+.+|++|++.++++||+.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999875
No 29
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.69 E-value=6.6e-17 Score=104.64 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.4
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|.|+|++..|+ .++++++++||++||++|++..|+|+.+|+|.|+|+.|+|+.+|++||+.+++++|++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 57999999997 599999999999999999999999999999999999999999999999999999999864
No 30
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.68 E-value=6.1e-17 Score=104.62 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.4
Q ss_pred EEEEcC-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-Ccccccccccccceeee
Q 026957 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~ 70 (230)
++|++. +|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++||+.+++++++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999987 68999999999999874
No 31
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.68 E-value=1e-16 Score=103.44 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=66.7
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEE
Q 026957 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (230)
|+|+...|+.+.+++++++||+++|++|+++.|+|+++|+|+|+|++|+|+.+|++|++++|+++|++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 5688899999999999999999999999999999999999999999999999999999999999998754
No 32
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.68 E-value=2.1e-16 Score=104.07 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=69.5
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCC--CCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEe
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (230)
|+|+|++.+|+.+.+++++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++|++++|++|++.++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 678999999999999999999999999999999999 9999999999999999999999999999999988764
No 33
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=9.6e-18 Score=111.58 Aligned_cols=74 Identities=99% Similarity=1.313 Sum_probs=71.8
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|++|++++.|++.++++.|++||..+|.+|++..||||++|+|.|+|+.|+|..|+++||+...+|+|+++++.
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~ 74 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998764
No 34
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.67 E-value=2.4e-16 Score=101.59 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=65.6
Q ss_pred EeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026957 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 158 ~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 226 (230)
++.+|+.+.+++++++||.+||++|++.+++|++.|+|+|+|+.|+|+.+|.+||+++|++|++..|++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 356889999999999999999999999999999999999999999999999999999999999998864
No 35
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.66 E-value=2.6e-16 Score=102.01 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|+|++. |+.+++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++..
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999996 99999999999999999999999999999999999999999999999999999999998864
No 36
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.66 E-value=2.2e-16 Score=103.47 Aligned_cols=70 Identities=33% Similarity=0.666 Sum_probs=67.2
Q ss_pred ccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
.+|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+++|++|++++|++|+++++.+||.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999984
No 37
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.66 E-value=3.3e-16 Score=101.79 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=68.5
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEE
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|++.|+|.|+|+.|+|+.+|++|++++|+++++..+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 578999999999999999999999999999999999999999999999999999999999999999998753
No 38
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=6.2e-17 Score=115.81 Aligned_cols=75 Identities=96% Similarity=1.317 Sum_probs=72.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecC
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|.|||+++.|++.++++.+++||..+|.+||+.+|||+++|+|+|.|++|+|..+|++|+|...++++++++..+
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~G 75 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998753
No 39
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.65 E-value=2.8e-16 Score=102.98 Aligned_cols=67 Identities=31% Similarity=0.632 Sum_probs=64.2
Q ss_pred CCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
++|+++++++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~ 71 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKER 71 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecC
Confidence 4799999999999999999999999999999999999999999999999999999999999998764
No 40
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.65 E-value=6.1e-16 Score=102.41 Aligned_cols=73 Identities=32% Similarity=0.431 Sum_probs=69.7
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEE--EEcCcccCCCcchhhhccccCCceEEEEEe
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L--~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (230)
|+++|+...|+.+.+++++++||++||++|++..++|+++|+| .|+|+.|+|+.+|++||+.+|++|+++++.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999999999 789999999999999999999999998874
No 41
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.64 E-value=1.4e-15 Score=102.22 Aligned_cols=77 Identities=18% Similarity=0.455 Sum_probs=74.2
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
.+.|.|+..+|+...+++.+++|+..||++++++.|+|+++++|+|+|+.|+++.|+.+|++++||+|+++++++||
T Consensus 11 ~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 11 HINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred eEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 46788888999999999999999999999999999999999999999999999999999999999999999999998
No 42
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.64 E-value=7.9e-16 Score=99.95 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=64.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe---ccccccCCCcccccccccccceeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~---~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|+. +|++|++++++++||++||++|++.+|+||++|+|++ .|+.+.|+.+|++|++.+++.+++.
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 6788876 6899999999999999999999999999999999996 8999999999999999999998875
No 43
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.62 E-value=9.3e-16 Score=99.62 Aligned_cols=70 Identities=26% Similarity=0.293 Sum_probs=62.9
Q ss_pred CEEEEEcCCCcE--EEEEecCCCcHHHHHHHhhhhhC--CCCCceEEEeccccccCCCcccccc--cccccceeee
Q 026957 1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~--~~~~v~~~~tv~~lK~~i~~~~g--i~~~~q~l~~~g~~l~d~~~l~~~~--i~~~~~i~l~ 70 (230)
|.++||+.+|+. |++++++++||++||++|++..+ .|+++|+|+|.|+.|.|+.+|++|. +.++.++||+
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV 77 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLV 77 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEE
Confidence 578999999998 55555899999999999999885 4579999999999999999999996 9999999986
No 44
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.62 E-value=1.3e-15 Score=98.50 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=65.8
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEE
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (230)
+.|+|++..|+ ..+++++++||++||++|++..|+|+++|+|.|+|+.|+|+.+|++||+++|++|++.++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 35788888886 589999999999999999999999999999999999999999999999999999998764
No 45
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.9e-16 Score=90.88 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=66.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEE
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (230)
|.|.++++.|+.+.++++++++|..+|++++++.||||.+|+|+|.|+.+.|+.+-++|++..|+++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 4688999999999999999999999999999999999999999999999999999999999999999873
No 46
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.60 E-value=2.3e-15 Score=97.23 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=63.2
Q ss_pred eEEEec-cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCC-cchhhhccccCCceEEE
Q 026957 79 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 146 (230)
Q Consensus 79 v~v~~~-~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~ 146 (230)
++|+.. +|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+ .+|++||+++|+++++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 467788 899999999999999999999999999999999999999999987 68999999999999874
No 47
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.2e-16 Score=106.31 Aligned_cols=77 Identities=97% Similarity=1.303 Sum_probs=73.6
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
|.++++...|+++++++++++||..+|.+|..+.|+|++.|+|+|+|+.|+|+.||++|+++.-|+|+++.|++||.
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~ 77 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCC
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999994
No 48
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.57 E-value=8.6e-15 Score=94.79 Aligned_cols=69 Identities=29% Similarity=0.490 Sum_probs=64.7
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEE
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (230)
++|.|+.. |+.+.+++++++||++||++|++.+|+|+++|+|.|+|+.|.|+.+|++|++.+|++|+++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 46788875 8899999999999999999999999999999999999999999999999999999999876
No 49
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.57 E-value=6.6e-15 Score=93.24 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.4
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCccccccccccc
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~ 65 (230)
|+|+|++.+ ..+.+++++++||++||++|++.+|+|+++|+|+|+|+.|.|+.+|++||+.+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 799999998 7999999999999999999999999999999999999999999999999998874
No 50
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.57 E-value=2e-14 Score=96.53 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=75.0
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
...|.|.|+..+|+.+.+++.+++|+..||.+++++.|+|++.++|+|+|+.|+++.|+.+|++.+|++|++.++..+|
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999999988775
No 51
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.57 E-value=1.2e-14 Score=94.38 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=63.4
Q ss_pred eeeEEEeccCee--EeeecCCCChHHHHHHHHHhHhC--CCCCCcEEEEcCcccCCCcchhhhc--cccCCceEEEE
Q 026957 77 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~--~~i~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~~--i~~~~~i~l~~ 147 (230)
+.++|++++++. +.+++++++||++||++|++..+ .|+++|+|+|.|+.|.|+.+|++|. +.++.+||++.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 678999999988 55666899999999999999875 5579999999999999999999996 99999999874
No 52
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.55 E-value=1.3e-14 Score=94.29 Aligned_cols=68 Identities=24% Similarity=0.439 Sum_probs=63.0
Q ss_pred eEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEE---cCeecCCCCcccccCCCCCCEEEEE
Q 026957 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~---~g~~l~d~~~L~~~~i~~~~~i~~~ 222 (230)
.+.|+ ++|+++.+++++++||++||++|++.+|+|+++|+|+| .|+.+.|+.+|++|++++|+.|+++
T Consensus 2 ~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 2 PVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred EEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 45566 68899999999999999999999999999999999996 8999999999999999999999886
No 53
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.54 E-value=1.3e-14 Score=94.31 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=58.7
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccccc-CCCcccccccc-cccceeeee
Q 026957 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (230)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~-d~~~l~~~~i~-~~~~i~l~~ 71 (230)
+...|.++.+++++++||++||++|++.+||||++|+| |.|+.|. |+.+|++||+. +|+++++.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 34468999999999999999999999999999999999 9998885 67999999999 779998864
No 54
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=7.5e-15 Score=105.19 Aligned_cols=77 Identities=95% Similarity=1.310 Sum_probs=73.9
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
|.|+|+...++++.+++.+++||..+|.+|++..|||+++|+|+|.|+.|.|+++|++|+|+..++|+++++++||+
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 46788888999999999999999999999999999999999999999999999999999999999999999999995
No 55
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=6.5e-14 Score=117.44 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.2
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhC---CCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+||++.|+++.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|+|.++++|++++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999887654
No 56
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.45 E-value=1.3e-13 Score=91.27 Aligned_cols=62 Identities=27% Similarity=0.326 Sum_probs=57.5
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-Ccccccccccccceeeeeee
Q 026957 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~~ 73 (230)
..+++|++++||.+||.+|.+.+++||.+|+|.++|+.|.|+ +||++||+.++++++|.++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 467889999999999999999999999999999999999875 89999999999999998753
No 57
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.44 E-value=2.6e-13 Score=85.84 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=59.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCC
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 141 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~ 141 (230)
|+|.|+..+ +.+.+++++++||++||++|++.+++|+++|+|+|+|+.|.|+.+|++|++.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 568888888 6889999999999999999999999999999999999999999999999999875
No 58
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.43 E-value=4.4e-13 Score=87.12 Aligned_cols=64 Identities=30% Similarity=0.372 Sum_probs=58.2
Q ss_pred eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccC-CCcchhhhccc-cCCceEEEE
Q 026957 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 147 (230)
Q Consensus 83 ~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~~L~~~~i~-~~~~i~l~~ 147 (230)
...|.++.+++++++||++||++|++++|+|++.|+| |.|+.|. |+.+|++||+. +|+++++.+
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 4578889999999999999999999999999999999 9999885 77899999998 789998764
No 59
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.39 E-value=3.7e-13 Score=86.19 Aligned_cols=55 Identities=33% Similarity=0.549 Sum_probs=49.5
Q ss_pred ecC-CCcHHHHHHHhhhhh--CCC-CCceEEEeccccccCCCcccccccccccceeeee
Q 026957 17 VES-SDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 17 v~~-~~tv~~lK~~i~~~~--gi~-~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
++| ++||.+||++|++.. |++ +++|+|+|.|+.|+|+.+|++|||.+++++||+.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 344 579999999999996 575 9999999999999999999999999999999974
No 60
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.39 E-value=6e-13 Score=85.26 Aligned_cols=53 Identities=32% Similarity=0.547 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHhHh--CCC-CCCcEEEEcCcccCCCcchhhhccccCCceEEEE
Q 026957 95 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 95 ~~~tV~~lK~~i~~~~--~i~-~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
.++||++||++|+++. +++ +++|+|+|.|+.|+|+.+|++|+|++|++||++.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4679999999999996 465 8899999999999999999999999999999874
No 61
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.38 E-value=1.4e-12 Score=83.70 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.3
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+..+|+.+.+++++++||.+||++|++..|+|+++|+|.|+|+.|+|..+|.+|++.+++++++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6777899999999999999999999999999999999999999999999999999999999988753
No 62
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.37 E-value=1.3e-12 Score=109.54 Aligned_cols=74 Identities=30% Similarity=0.588 Sum_probs=70.1
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC---CCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEee
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (230)
|+|+|++.+|+.+.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|+|+++++|++++...
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 68999999999999999999999999999999998 999999999999999999999999999999999887653
No 63
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.36 E-value=5.5e-13 Score=91.16 Aligned_cols=73 Identities=27% Similarity=0.374 Sum_probs=64.3
Q ss_pred EEEEEcCCC-cEEEEEecCCCcHHHHHHHhh-----hhhCCC--CCceEEEeccccccCCCcccccc------cccccce
Q 026957 2 QIFVKTLTG-KTITLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (230)
Q Consensus 2 ~v~v~~~~g-~~~~~~v~~~~tv~~lK~~i~-----~~~gi~--~~~q~l~~~g~~l~d~~~l~~~~------i~~~~~i 67 (230)
.|.++..+| ..=+..+++++||++||++|+ ...|+| +++|+|+|+|+.|+|+.||++|+ +....|+
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 577888888 456789999999999999999 556677 99999999999999999999999 6777899
Q ss_pred eeeeeec
Q 026957 68 HLVLRLR 74 (230)
Q Consensus 68 ~l~~~~~ 74 (230)
|+++++.
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9999874
No 64
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.35 E-value=1.4e-12 Score=89.18 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=65.5
Q ss_pred CceeeEEEeccCeeE-eeecCCCChHHHHHHHHHhHh-----CCC--CCCcEEEEcCcccCCCcchhhhc------cccC
Q 026957 75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLADYN------IQKE 140 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~-~i~v~~~~tV~~lK~~i~~~~-----~i~--~~~q~L~~~g~~L~d~~~L~~~~------i~~~ 140 (230)
+.+.|.++..+|..+ +..+++++||++||++|++.+ ++| +++|+|+|.|+.|+|+.||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 346788888998654 788999999999999999666 344 99999999999999999999999 6666
Q ss_pred CceEEEEEeec
Q 026957 141 STLHLVLRLRG 151 (230)
Q Consensus 141 ~~i~l~~~~~~ 151 (230)
.|+|+++++..
T Consensus 83 ~TmHvvlr~~~ 93 (113)
T cd01814 83 ITMHVVVQPPL 93 (113)
T ss_pred eEEEEEecCCC
Confidence 88999888653
No 65
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.31 E-value=8.4e-12 Score=80.03 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=62.2
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEE
Q 026957 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
|+..+|+.+.+.+++++||++||++|+..+++|+++|+|.|+|+.|+|+.+|.+|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 4566788999999999999999999999999999999999999999999999999999999998763
No 66
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.31 E-value=6.1e-12 Score=81.54 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.9
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CceEEEeccccccCCCcccccccccccceeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|+|+..+|+.+.+.|.+++++..|+++.++..|+|+ +..+|+|+|+.|+++.|++++|+.++++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999999 999999999999999999999999999998763
No 67
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.28 E-value=7.8e-12 Score=82.94 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=56.0
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccC-CCcchhhhccccCCceEEEEE
Q 026957 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~i~l~~~ 148 (230)
...+.|++++||.+||.+|.+.+++||..|+|.++|+.|. |.+||++||+.++++|.+.++
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 4578899999999999999999999999999999999986 577999999999999988764
No 68
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.28 E-value=1.7e-11 Score=79.40 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.1
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEEEcCcccCCCcchhhhccccCCceEEEE
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
|+|+++..+|+.+.+.+.+++++..|++.++++.++|+ +.++|.|.|+.|+++.|++++++.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 57889999999999999999999999999999999999 999999999999999999999999999998863
No 69
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.24 E-value=1.3e-11 Score=99.10 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.0
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhC--CCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g--i~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|.|+||++.|.+|++++.|++||.++|.+|+...| .|+++|.|+|+|+.|.|+.++.+|++..+.-|.+.+.-.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 89999999999999999999999999999999999 999999999999999999999999999998877766543
No 70
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.23 E-value=1.7e-11 Score=103.47 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=70.2
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEee
Q 026957 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (230)
.++|+|++.++ ++.+.|..+.||.+||+.|...+++++++++|+|.|+.|+|+.||..|||.+|.|||++++..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 47889998888 899999999999999999999999999999999999999999999999999999999998765
No 71
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.23 E-value=1.1e-11 Score=104.46 Aligned_cols=73 Identities=37% Similarity=0.592 Sum_probs=69.4
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
++|+||+.++ .+.+.|..+.||.++|++|.+.+++|+++++|+|.|+.|+|+.||..|||.++.||||+++..
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 4799999977 999999999999999999999999999999999999999999999999999999999998753
No 72
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.19 E-value=7.5e-11 Score=78.53 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=58.0
Q ss_pred EEEEEcCC-CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE-eccc-----cc-cCCCcccccccccccceeeee
Q 026957 2 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~-----~l-~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+|++.. ....+..+++++||.+||++++..+|+||+.|+|. +.|+ .| +|..+|++|++.+|.+||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 46666643 34455569999999999999999999999999995 7776 35 667899999999999999864
No 73
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.17 E-value=8.7e-11 Score=79.96 Aligned_cols=71 Identities=30% Similarity=0.419 Sum_probs=64.4
Q ss_pred ccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCC-------CCCCEEEEEEEecCCCC
Q 026957 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRLRGGDF 230 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i-------~~~~~i~~~~~~~~g~~ 230 (230)
+...++.+.+.++.||.+||++|+.-...||+.|+|+..+.+|+|++||++||+ +..+++-+.+|...|.|
T Consensus 9 R~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~~f 86 (119)
T cd01788 9 RHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSDDTF 86 (119)
T ss_pred ecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecCCCCc
Confidence 445678899999999999999999999999999999977789999999999999 77999999999887865
No 74
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.11 E-value=3.3e-10 Score=76.09 Aligned_cols=70 Identities=26% Similarity=0.490 Sum_probs=57.7
Q ss_pred EEEEEcCCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec-c-------ccccCCCcccccccccccceeeee
Q 026957 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G-------KQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~-g-------~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+|.+..- ......+++++||++||.+++..+|+|++.|+|.+. . ...+|..+|.+||+.+|.+||+.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 577777754 489999999999999999999999999999999976 1 223567999999999999998863
No 75
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.06 E-value=4.9e-10 Score=76.34 Aligned_cols=72 Identities=31% Similarity=0.462 Sum_probs=61.6
Q ss_pred CEEEEEcCCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccc-------cccceeeeee
Q 026957 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~-------~~~~i~l~~~ 72 (230)
|.+|+.....+ ++.++..++.||.+||++|+.....||+.|+|+..++.|+|++||++||+. ..+++.|.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 67888777554 678999999999999999999999999999999777889999999999994 3555666555
No 76
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.05 E-value=4.2e-10 Score=90.51 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.2
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC--CCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEee
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (230)
|.|+||++.++.+.+++.+++||.++|.+|+...| +|++.|+|+|+|+.|.|+.++.+|++.++..|-+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 67899999999999999999999999999999999 999999999999999999999999999999888887655
No 77
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.04 E-value=1.1e-09 Score=72.95 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=53.3
Q ss_pred ceeEEEeeccchHHHHHHhhccccCCCCCceEEE-EcCe-----ec-CCCCcccccCCCCCCEEEEEE
Q 026957 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 163 ~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g~-----~l-~d~~~L~~~~i~~~~~i~~~~ 223 (230)
.....+++++.||.+||++++..+|+|++.|+|. +.+. .| +|.++|.+||+++|++|+++=
T Consensus 13 ~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 13 FSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred eeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 3455668899999999999999999999999996 7776 45 788999999999999999863
No 78
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=99.01 E-value=2e-09 Score=67.35 Aligned_cols=72 Identities=28% Similarity=0.404 Sum_probs=64.9
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec--c---ccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--G---KQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~--g---~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
++|+|+-.++..+.+.|+|..+|.++|++|....|++- .|+|.|+ | +.|.+..+|++|||..+..|.++-..
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 58999999999999999999999999999999999998 8999996 2 66889999999999999888876543
No 79
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.98 E-value=3.1e-09 Score=68.54 Aligned_cols=72 Identities=83% Similarity=1.130 Sum_probs=67.7
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
+++++..|+++.+++.+..+|..+|.+|+...|+|+..|++.+.|+.|.|..++.+|+|..++++++..++.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 577888999999999999999999999999999999999999999999999999999999999999887653
No 80
>PLN02560 enoyl-CoA reductase
Probab=98.97 E-value=1.6e-09 Score=88.95 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=62.3
Q ss_pred CEEEEEcCCCcEE---EEEecCCCcHHHHHHHhhhhhCC-CCCceEEEec---c----ccccCCCcccccccccccceee
Q 026957 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~---~~~v~~~~tv~~lK~~i~~~~gi-~~~~q~l~~~---g----~~l~d~~~l~~~~i~~~~~i~l 69 (230)
|+|+|+..+|+.. ++++++++||++||.+|++..++ ++++|+|.+. | ..|+|+.+|+++|+.+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999999889887 79999999999999999999987 8999999983 3 3788999999999999998776
No 81
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.94 E-value=4.1e-09 Score=70.76 Aligned_cols=68 Identities=28% Similarity=0.572 Sum_probs=54.2
Q ss_pred EEEEeccC--ceeEEEeeccchHHHHHHhhccccCCCCCceEEEEc----C---eec-CCCCcccccCCCCCCEEEEE
Q 026957 155 IFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 155 i~v~~~~~--~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~----g---~~l-~d~~~L~~~~i~~~~~i~~~ 222 (230)
+.+..... ......++.+.||.+||++++..+|+|++.|+|.+. + ..+ +|.++|.+||+++|++|++.
T Consensus 4 l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 4 LFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 44454443 478889999999999999999999999999999854 1 223 68899999999999999885
No 82
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.88 E-value=7.9e-09 Score=72.04 Aligned_cols=75 Identities=29% Similarity=0.492 Sum_probs=56.8
Q ss_pred ceeeEEEeccCe-eEeeecCCCChHHHHHHHHHhHhC-------CCCCCcEEEEcCcccCCCcchhhhccccCC------
Q 026957 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 141 (230)
Q Consensus 76 ~~~v~v~~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~-------i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~------ 141 (230)
.+.+.++..+|. ..++.+++++||++||+.|...+. ..++.++|+|.|+.|+|+.+|+++.+..|+
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 456777788998 789999999999999999998763 235678999999999999999999988766
Q ss_pred ceEEEEEee
Q 026957 142 TLHLVLRLR 150 (230)
Q Consensus 142 ~i~l~~~~~ 150 (230)
++|+++++.
T Consensus 82 vmHlvvrp~ 90 (111)
T PF13881_consen 82 VMHLVVRPN 90 (111)
T ss_dssp EEEEEE-SS
T ss_pred EEEEEecCC
Confidence 566766543
No 83
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.83 E-value=3.9e-08 Score=63.31 Aligned_cols=73 Identities=84% Similarity=1.145 Sum_probs=67.4
Q ss_pred EEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026957 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~ 227 (230)
+++....|+++.+++.+..++..+|.+++...|+|++.|++.+.|+.|.|+.++.+|+|..++++++..++.+
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~ 74 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG 74 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence 3455677999999999999999999999999999999999999999999999999999999999999998764
No 84
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=5.1e-09 Score=95.21 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=70.7
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCc
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
.|.||+++.++.++.|+..+||.++|+.|....+|+.+.|+++|+|+.|.|++++++|++ +|-+|||+-++.+.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999 99999999987654
No 85
>PLN02560 enoyl-CoA reductase
Probab=98.74 E-value=3.1e-08 Score=81.45 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=60.1
Q ss_pred eeeEEEeccCeeE---eeecCCCChHHHHHHHHHhHhCC-CCCCcEEEEc---C----cccCCCcchhhhccccCCceEE
Q 026957 77 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 77 ~~v~v~~~~g~~~---~i~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~~~---g----~~L~d~~~L~~~~i~~~~~i~l 145 (230)
|.|.|+..+|+.+ .+++++++||++||++|+++.++ ++++|+|.+. | ..|.|+.+|+++|+.+|+++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 5677887778776 78999999999999999999986 8999999973 3 3788999999999999998766
Q ss_pred E
Q 026957 146 V 146 (230)
Q Consensus 146 ~ 146 (230)
.
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 3
No 86
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2e-08 Score=91.41 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=70.4
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
.|+||+++.++.++.+...+||.+||..|..+.+|+.+.||++|+|++|.|++++++|++ +|-+||++-|++++
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 488999999999999999999999999999999999999999999999999999999999 99999999987654
No 87
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.69 E-value=9e-08 Score=66.75 Aligned_cols=72 Identities=31% Similarity=0.505 Sum_probs=54.8
Q ss_pred EEEEEcCCCc-EEEEEecCCCcHHHHHHHhhhhh-------CCCCCceEEEeccccccCCCccccccccccc------ce
Q 026957 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKE-------GIPPDQQRLIFAGKQLEDGRTLADYNIQKES------TL 67 (230)
Q Consensus 2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~-------gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~------~i 67 (230)
.+.++..+|. +-++.+++.+||++||+.|...- -..++..+|++.|+.|+|+.+|+++.+..+. ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 5677778999 99999999999999999998652 2346788999999999999999999987655 57
Q ss_pred eeeeee
Q 026957 68 HLVLRL 73 (230)
Q Consensus 68 ~l~~~~ 73 (230)
|+++++
T Consensus 84 Hlvvrp 89 (111)
T PF13881_consen 84 HLVVRP 89 (111)
T ss_dssp EEEE-S
T ss_pred EEEecC
Confidence 777765
No 88
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.67 E-value=6.6e-08 Score=63.30 Aligned_cols=68 Identities=26% Similarity=0.318 Sum_probs=52.8
Q ss_pred EEEEEcCC-CcEEEEEe-cCCCcHHHHHHHhhhhhC-CCCCceEEE--eccccccCCCcccccccccccceee
Q 026957 2 QIFVKTLT-GKTITLEV-ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~-g~~~~~~v-~~~~tv~~lK~~i~~~~g-i~~~~q~l~--~~g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
.|.++..+ .....+++ ++++||.+||..|+...+ +++++|+|. +.|+.|.|+.+|++||+.+++++++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 34454444 22222333 588999999999999976 579999997 6789999999999999999988765
No 89
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.65 E-value=8.9e-08 Score=62.85 Aligned_cols=69 Identities=29% Similarity=0.434 Sum_probs=43.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc---ccc--cCCCcccccccccccceeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g---~~l--~d~~~l~~~~i~~~~~i~l~ 70 (230)
|-|.|++.+| .+.+++++++|+.+|+++|++.+++|++.|.|+.+. ..+ .+..+|+++||+.|+-+++.
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 5678888764 677899999999999999999999999999988642 345 46789999999999998764
No 90
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.4e-07 Score=61.16 Aligned_cols=77 Identities=17% Similarity=0.422 Sum_probs=70.7
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
+.+.|+...+....+.+..+++...|++..|++.|++-+.+|+.|+|..+.+..|.++++.++|+.|.+..-+.||.
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 44566666678889999999999999999999999999999999999999999999999999999999999999985
No 91
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.58 E-value=2e-07 Score=60.96 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.6
Q ss_pred CCCChHHHHHHHHHhHhC-CCCCCcEEE--EcCcccCCCcchhhhccccCCceEE
Q 026957 94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 94 ~~~~tV~~lK~~i~~~~~-i~~~~q~L~--~~g~~L~d~~~L~~~~i~~~~~i~l 145 (230)
+++.||.+||..|++..+ +++++|+|. +.|+.|.|+.+|.+||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 577899999999999986 589999986 7889999999999999999998876
No 92
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.49 E-value=5e-07 Score=55.89 Aligned_cols=67 Identities=46% Similarity=0.666 Sum_probs=60.3
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+..+|....+.+.+++|+.++|++|....|+++..|.|+++|..+.+...+..+++..++++++..
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444788999999999999999999999999999999999999999998888899999999988753
No 93
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.49 E-value=2.2e-07 Score=60.94 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=41.5
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcC---eec--CCCCcccccCCCCCCEEEEE
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g---~~l--~d~~~L~~~~i~~~~~i~~~ 222 (230)
.|-+.+++.+ -.+.+++++++|+.+|+++|++..++|...+.|+.+. ..+ +++++|+++|++.||.|++.
T Consensus 4 ~milRvrS~d-G~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 4 SMILRVRSKD-GMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp --EEEEE-SS-EEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred cEEEEEECCC-CCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 3445566544 4567789999999999999999999999999887322 344 57899999999999999874
No 94
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=5.8e-07 Score=72.10 Aligned_cols=73 Identities=32% Similarity=0.604 Sum_probs=65.7
Q ss_pred CEEEEEcC---CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeee-eee
Q 026957 1 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 73 (230)
Q Consensus 1 m~v~v~~~---~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~-~~~ 73 (230)
|.++|+.. ....++++|+.+.+|.+||+.|+.+.|+|+++.+++|.|++|.++.+++.+++...+.+|+. ++|
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 67788765 34578999999999999999999999999999999999999999999999999999998876 555
No 95
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.37 E-value=1.9e-06 Score=53.18 Aligned_cols=65 Identities=45% Similarity=0.653 Sum_probs=58.8
Q ss_pred eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEE
Q 026957 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 83 ~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
..++....+.+.++.|++++|+.++.++++++..+.|.++|..+.+...+.++++.+++++++..
T Consensus 4 ~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 4 LNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred ecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 34677888999999999999999999999999999999999999998888899999999998753
No 96
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.37 E-value=2.7e-06 Score=53.49 Aligned_cols=71 Identities=27% Similarity=0.366 Sum_probs=60.7
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC-----cccCCCcchhhhccccCCceEEEEE
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g-----~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (230)
++|+|+..++....+.|++..+|..+|++|....+++- .|+|.|.. +.|.+..+|++|||..+..|.++..
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT 76 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET 76 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence 46788888888899999999999999999999999876 89998743 4678999999999998887766543
No 97
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=7.6e-06 Score=54.76 Aligned_cols=79 Identities=16% Similarity=0.428 Sum_probs=71.3
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecce
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 153 (230)
..+++.|...++....+.+..+++...|+...+++.|++.+..++.|+|+.+.+..|.++.++.+|+.|.+.....+|.
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 4466777777788889999999999999999999999999999999999999999999999999999999987766654
No 98
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.5e-07 Score=56.22 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=60.7
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEE
Q 026957 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (230)
.+.++..-|++..+.+.+++||+++|..|+.++|..++.+.|.-.+..+.|.-+|++|.+.+|..+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 455666779999999999999999999999999999999998877788899999999999998876553
No 99
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=98.26 E-value=1.7e-06 Score=57.04 Aligned_cols=64 Identities=28% Similarity=0.429 Sum_probs=54.0
Q ss_pred CEEEEEcCCC-cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec-c-ccccCCCcccccccccc
Q 026957 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G-KQLEDGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g-~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~-g-~~l~d~~~l~~~~i~~~ 64 (230)
|.+|++.-.. .++.++..++.||.+||++++....-|++.|+|+.. . +.|+|.++|+++|..+.
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~ 67 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQ 67 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccccc
Confidence 5566665543 467889999999999999999999999999999974 3 78999999999998654
No 100
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=8e-07 Score=54.07 Aligned_cols=68 Identities=26% Similarity=0.381 Sum_probs=58.9
Q ss_pred EEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026957 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 156 ~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 223 (230)
.++..-|+...+.+++++||.++|+.|+.++|..++...|..-+...+|.-+|++|.+.+|..+++..
T Consensus 5 ~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy 72 (73)
T KOG3493|consen 5 VLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYY 72 (73)
T ss_pred hhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEee
Confidence 34445588999999999999999999999999999988887556788999999999999999887753
No 101
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=98.13 E-value=6.6e-06 Score=51.51 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.4
Q ss_pred eccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEE
Q 026957 159 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 159 ~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~ 221 (230)
..+++...+.+.++.++.++-+..+++.++.++.+.|.|+++.+|-+.+++..|+.+|+++++
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 357889999999999999999999999999999999999999999999999999999999875
No 102
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=2.2e-06 Score=55.79 Aligned_cols=77 Identities=17% Similarity=0.379 Sum_probs=70.6
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
+.+.+...++.++.+.+..+.|...|....+.+.|-.-+..|+.|+|+..+.++|..+++..+|+.|.++..+.||+
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 45556667788999999999999999999999999999999999999999999999999999999999999999886
No 103
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=4.3e-06 Score=70.78 Aligned_cols=70 Identities=23% Similarity=0.416 Sum_probs=63.8
Q ss_pred EEEEcCCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 3 IFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 3 v~v~~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.| -+.|+.++++ ++.++|+..+|+++...+|+||++|++.+.|..+.|+..+....|+++.+++|.-..
T Consensus 6 v~V-KW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 6 VIV-KWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred Eee-eecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 444 4579999998 999999999999999999999999999999999999999999999999999997543
No 104
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.4e-05 Score=67.79 Aligned_cols=69 Identities=25% Similarity=0.443 Sum_probs=63.2
Q ss_pred EEEEeccCceeEEE-eeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026957 155 IFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 155 i~v~~~~~~~~~~~-v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
+.|+ +.|+.|+++ ++.++|+..||.++...+|+||++|++...|..+.|+..+...+|++|.+++|+-.
T Consensus 6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt 75 (473)
T KOG1872|consen 6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGT 75 (473)
T ss_pred Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecc
Confidence 4555 889999988 99999999999999999999999999999999999988999999999999988754
No 105
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.86 E-value=6.7e-05 Score=46.98 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.0
Q ss_pred eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEE
Q 026957 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 83 ~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 145 (230)
..+++.+.+.+.+++++.++-+..++++++.++...|.|+++.++-+.++.-.|+.+|+.+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 467889999999999999999999999999999999999999999999999999999998754
No 106
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.3e-05 Score=63.12 Aligned_cols=63 Identities=33% Similarity=0.651 Sum_probs=57.1
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEE-EEe
Q 026957 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 149 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~-~~~ 149 (230)
..++++|+.+.+|.+||+.++.+.|+|+++.+++|.|++|.++.++..+.+...+.+|++ +|+
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 347888999999999999999999999999999999999999999999999888888876 443
No 107
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.79 E-value=4.9e-05 Score=50.21 Aligned_cols=55 Identities=29% Similarity=0.385 Sum_probs=47.6
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-cC-cccCCCcchhhhcccc
Q 026957 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQK 139 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g-~~L~d~~~L~~~~i~~ 139 (230)
+..++.+...++.||.+||++++....-|+++|+|+. .. +.|+|.++|+++|...
T Consensus 10 ~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 10 HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence 3446778999999999999999999999999999985 33 6789999999998754
No 108
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.52 E-value=0.00026 Score=46.40 Aligned_cols=67 Identities=22% Similarity=0.376 Sum_probs=47.4
Q ss_pred EEEEeccCceeEEEeeccchHHHHHHhhccccCCCC---C---ceEEE-EcCeecCCCCcccccCCCCCCEEEE
Q 026957 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---D---QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~---~---~~~l~-~~g~~l~d~~~L~~~~i~~~~~i~~ 221 (230)
+.+...+++.+.+.++.+.++.+|...+.+..+.+. . .+.|. -+|..|+++.+|+++||.+|+.+++
T Consensus 5 Vtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 5 VTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 444444468899999999999999999988776422 2 35666 6788999999999999999999976
No 109
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.51 E-value=0.00031 Score=46.02 Aligned_cols=68 Identities=22% Similarity=0.408 Sum_probs=48.1
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCce------EEE-eccccccCCCcccccccccccceee
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ------RLI-FAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q------~l~-~~g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
+|+|..-+|+.+.+.++.+.+|.+|...+.+..+.+.... .|. ..|..|+++.+|+++|+.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 5777665579999999999999999999999998754332 333 4588999999999999999999876
No 110
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.47 E-value=0.00095 Score=43.97 Aligned_cols=69 Identities=23% Similarity=0.369 Sum_probs=57.7
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCc-eEEE--EcCeecCC--CCcccccCCCCCCEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLED--GRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~-~~l~--~~g~~l~d--~~~L~~~~i~~~~~i~~ 221 (230)
..|.++..+|+.+...+..++|+.+|...|......+... +.|+ |..+.+.+ +++|.+.|+.++++|.+
T Consensus 7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 4678888999999999999999999999999887766654 8886 66677743 37999999999999876
No 111
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.41 E-value=0.00087 Score=44.01 Aligned_cols=69 Identities=22% Similarity=0.251 Sum_probs=56.6
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE--EcCeecCC---CCcccccCCCCCCEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l~d---~~~L~~~~i~~~~~i~~ 221 (230)
..|.++..+|+.+...++.++|+.++.+.+....+.....+.|. |..+.+.+ +++|.+.|+-+++++.+
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 45778888999999999999999999999966666666678887 66677742 58999999999988865
No 112
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.31 E-value=0.0019 Score=42.36 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=57.7
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccCC---CcchhhhccccCCceEE
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 145 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~~L~~~~i~~~~~i~l 145 (230)
+...|.|+.++|..+.-.++.++|+.++.+-+....+.+.....|. |..+.+.+ +.+|.+.|+.+++++.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 3457889999999999999999999999999976666666677776 56677753 47999999988887754
No 113
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.28 E-value=0.0021 Score=42.34 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=57.0
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEE--eccccccCC--Ccccccccccccceee
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~--~~g~~l~d~--~~l~~~~i~~~~~i~l 69 (230)
+|-|+..+|..+.-.+.+++||.+|.+.|......+... -.|. |-.+.+.+. .||++.|+.+++++++
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 588999999999999999999999999999998887764 4554 445666654 6999999999988876
No 114
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.27 E-value=0.0017 Score=47.95 Aligned_cols=64 Identities=22% Similarity=0.412 Sum_probs=49.8
Q ss_pred CEEEEEcCCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCce-EEEec-cccc--cCCCcccccccccc
Q 026957 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~l~~~-g~~l--~d~~~l~~~~i~~~ 64 (230)
|+|+|.+++| .++.+.++++.||.+|+..|....++|+..| .|++. ++.+ .++..++.+.-.+.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~ 72 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQ 72 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcC
Confidence 7899999999 6999999999999999999999999999885 45553 5555 34455555544333
No 115
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.23 E-value=0.002 Score=47.58 Aligned_cols=76 Identities=29% Similarity=0.504 Sum_probs=57.4
Q ss_pred eeEEEEeccC----ceeEEEeeccchHHHHHHhhccccCCCCCc-eEEEE-cCeec--CCCCcccccCCCCC----CEEE
Q 026957 153 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF-AGKQL--EDGRTLADYNIQKE----STLH 220 (230)
Q Consensus 153 ~~i~v~~~~~----~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~-~~l~~-~g~~l--~d~~~L~~~~i~~~----~~i~ 220 (230)
++++|.+.+| .++.+.++++.||.+|+..|.+..+++... +.|.. .+..+ .++..+..+.-.+. -+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 3577888888 578888889999999999999999998877 34554 34344 45566666655444 3789
Q ss_pred EEEEecCC
Q 026957 221 LVLRLRGG 228 (230)
Q Consensus 221 ~~~~~~~g 228 (230)
+..++.||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 99999998
No 116
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.20 E-value=0.0024 Score=41.78 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=55.7
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE--EcCeecCC---CCcccccCCCCCCEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l~d---~~~L~~~~i~~~~~i~~ 221 (230)
..|.++..+|+.....++.++|+.++...|....+.+ ..+.|+ |..+.+.+ ++||.+.|+.+.++|.+
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 3577888899999999999999999999998765433 557776 77787743 58999999999999876
No 117
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.11 E-value=0.0038 Score=40.59 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=52.7
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE--EcCeecC---CCCcccccCCCCCCEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l~---d~~~L~~~~i~~~~~i~~ 221 (230)
..|.++..+|+.+...++.++|+.++.+-|.....- ...+.|. |..+.+. .++||.+.|+.+ +.+.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 357788899999999999999999999999876533 5667776 6667764 589999999995 44433
No 118
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0006 Score=44.64 Aligned_cols=72 Identities=15% Similarity=0.354 Sum_probs=64.8
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEE
Q 026957 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
.+.+.|...+|..+.+.+..+++...|....+.+.|-..+..|+.|+|+.++.++|..++++.+++.|..+.
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHH
Confidence 466777677888999999999999999999999999999999999999999999999999999999876543
No 119
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.02 E-value=0.0047 Score=40.43 Aligned_cols=67 Identities=16% Similarity=0.316 Sum_probs=53.5
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--eccccccC---CCcccccccccccceee
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d---~~~l~~~~i~~~~~i~l 69 (230)
+|-|+..+|.+..-....++|+.+|.+.|....+-+. .-.|. |-.+.+.+ +.||.+.|+.+.+++.+
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~~-~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNGG-PFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCCC-CEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 5789999999999999999999999999997765443 23444 55677753 48999999998888765
No 120
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.0011 Score=50.52 Aligned_cols=63 Identities=29% Similarity=0.448 Sum_probs=57.4
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.++.+.+.+...+|+.++|.+++...|+.+..|+++++|..+-|...|..|++..+....+.+
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 467788899999999999999999999999999999999999999999999999997765543
No 121
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.95 E-value=0.0066 Score=39.85 Aligned_cols=71 Identities=17% Similarity=0.338 Sum_probs=59.9
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE--EcCeec---CCCCcccccCCCCCCEEEEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l---~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
-.|.++..+|+...-.+..++++..|...+.. .|.+++.+.|+ |..+.+ +-+.||.+.|+.+.+++.+--|
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 35788889999999999999999999999988 47788889888 777766 4458999999999999987543
No 122
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.95 E-value=0.0039 Score=40.78 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=53.3
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCC-CCCceEEE--EcCeec-CCCCcccccCCCCCCEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQL-EDGRTLADYNIQKESTL 219 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~-~~~~~~l~--~~g~~l-~d~~~L~~~~i~~~~~i 219 (230)
..|.++..+|+.+...++.++||.+|.+-+....+- ....+.|. |..+.+ +++.||.+.|+.+...+
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 467888899999999999999999999999987643 23567776 667766 55889999999964433
No 123
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.90 E-value=0.0035 Score=42.64 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=39.5
Q ss_pred EeeecC--CCChHHHHHHHHHhHhC--CCCCCcEEEEcCcccCCCcchhhhccc
Q 026957 89 ITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQ 138 (230)
Q Consensus 89 ~~i~v~--~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~~i~ 138 (230)
..++++ .+.||..||+.|.+..+ ..-.+++|+|+|+.|.|...|+..-..
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~ 67 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKL 67 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhcc
Confidence 556665 77899999999999984 344568899999999999888765443
No 124
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.89 E-value=0.008 Score=39.31 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=53.3
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCC-CCCCcEEE--EcCcccCC-CcchhhhccccCCc
Q 026957 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKEST 142 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~--~~g~~L~d-~~~L~~~~i~~~~~ 142 (230)
...|.|+.++|+.+.-.++.++||++|.+-|....+- ......|. |..+.+.| +.||.+.|+.+...
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 4578899999999999999999999999999987643 23456675 66777754 77999999986443
No 125
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.89 E-value=0.0076 Score=39.51 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=58.7
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE--EcCeec---CCCCcccccCCCCCCEEEEE
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l---~d~~~L~~~~i~~~~~i~~~ 222 (230)
...|.++..+|+...-.+..+++++.|..-+... |.++..++|+ |..+.+ +.+.||.+.|+.+..+|.+-
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 3567788889999999999999999999999876 7777889997 777766 34579999999999998764
No 126
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.88 E-value=0.0018 Score=50.79 Aligned_cols=69 Identities=28% Similarity=0.405 Sum_probs=53.6
Q ss_pred CEEEEEcCCCc-EE-EEEecCCCcHHHHHHHh-hhhhCCCCCceEEEe----ccccccCCCcccccccccccceee
Q 026957 1 MQIFVKTLTGK-TI-TLEVESSDTIDNVKAKI-QDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~-~~-~~~v~~~~tv~~lK~~i-~~~~gi~~~~q~l~~----~g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
|.|++...+++ .. ..+.+..+|++|++.++ ++...+.+.++++.+ .|+.|-|+.+|++|+..++.++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 78999888763 33 36778889999999555 555678886666654 489999999999999999977665
No 127
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.83 E-value=0.0074 Score=39.21 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=49.5
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--eccccccC---CCccccccccccc
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKES 65 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d---~~~l~~~~i~~~~ 65 (230)
+|-|+..+|....-....++||.+|.+.|.....-+ ..-.|. |-.+.+.+ +.||.+.|+.+..
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~~-~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~ 71 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPPA-EPFTLMTSFPRRVLTDLDYELTLQEAGLVNEV 71 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCCC-CCEEEEeCCCCccCCCCCccCcHHHcCCccce
Confidence 578999999999999999999999999998876543 233444 45566654 7899999999543
No 128
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.80 E-value=0.0096 Score=39.51 Aligned_cols=69 Identities=13% Similarity=0.233 Sum_probs=55.9
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE--EcCeecC--------CCCcccccCCCCCCEEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--------DGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l~--------d~~~L~~~~i~~~~~i~~~ 222 (230)
..|.++..+|+...-.++.++|+++|..-|... +..+..+.|+ |..+.+. .+.||.+.|+.+..++.+-
T Consensus 5 ~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 5 VKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 467788889999999999999999999999654 5566788887 5446764 4679999999998888653
No 129
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.79 E-value=0.012 Score=39.08 Aligned_cols=70 Identities=13% Similarity=0.228 Sum_probs=55.9
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccC--------CCcchhhhccccCCceE
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--------DGRTLADYNIQKESTLH 144 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~--------d~~~L~~~~i~~~~~i~ 144 (230)
+..+|.++.++|+...-.+..++||++|..-|.. .+..+....|+ |..+.+. .+.||.+.|+.+..++.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 3467889999999999999999999999999964 45566778887 4446775 36799999999888775
Q ss_pred E
Q 026957 145 L 145 (230)
Q Consensus 145 l 145 (230)
+
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 4
No 130
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.74 E-value=0.013 Score=37.11 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=53.5
Q ss_pred EEEEeccCceeEEEeeccchHHHHHHhhccccCC--C-CC--ceEEEEcCeecCCCCcccccCCCCCCEEEE
Q 026957 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--P-PD--QQRLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~--~-~~--~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~ 221 (230)
+-.+..+|.++.+.++...++..|-..+.+...+ + .+ ..+..-+++.|.++..|.+|+|.+|+.+.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 4445677999999999999999888777765543 2 23 346668889999999999999999999875
No 131
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=96.72 E-value=0.014 Score=45.77 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=54.8
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCC-ceEE--E--ecc---ccccCCCcccccccccccceeeeeeecC--------
Q 026957 12 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRL--I--FAG---KQLEDGRTLADYNIQKESTLHLVLRLRG-------- 75 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~l--~--~~g---~~l~d~~~l~~~~i~~~~~i~l~~~~~~-------- 75 (230)
.+.+.++.+.||.||.+++++..+++.+ .+.| + +++ +.+..+..+.+. .+...+.+-.-|.+
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~~ 112 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDES 112 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT-
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhccccc
Confidence 5889999999999999999999999865 3333 3 234 346666666665 22222222111111
Q ss_pred --ceeeEEEe-------ccCeeEeeecCCCChHHHHHHHHHhHhCCCCC
Q 026957 76 --GMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 115 (230)
Q Consensus 76 --~~~v~v~~-------~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~ 115 (230)
...|.|.- ..|-.|.+.+.+++|.+++|++|++++|++-.
T Consensus 113 ~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 113 EGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp -TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred ccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 12233322 24677889999999999999999999998743
No 132
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.66 E-value=0.017 Score=37.93 Aligned_cols=71 Identities=15% Similarity=0.299 Sum_probs=59.3
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccC---CCcchhhhccccCCceEEEE
Q 026957 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~L~~~~i~~~~~i~l~~ 147 (230)
.-+|.|+.++|+...-.+..++++.+|-.-+.. .|.++....|+ |-.+.+. .+.||.+.|+.+..++.+.-
T Consensus 5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 357889999999999999999999999999988 57788888887 6666663 35799999999999887643
No 133
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.62 E-value=0.02 Score=37.55 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=58.0
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccC---CCcchhhhccccCCceEEE
Q 026957 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~L~~~~i~~~~~i~l~ 146 (230)
..+|.++.++|....-.+..++++.+|-.-+... |.++...+|+ |-.+.+. .+.||.+.|+.+..++.+.
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 4578889999999999999999999999999875 7777788887 6667763 3569999999988887664
No 134
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.60 E-value=0.0065 Score=41.32 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=44.1
Q ss_pred EEEEcCC-CcEEEEEec--CCCcHHHHHHHhhhhhC--CCCCceEEEeccccccCCCccccccc
Q 026957 3 IFVKTLT-GKTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNI 61 (230)
Q Consensus 3 v~v~~~~-g~~~~~~v~--~~~tv~~lK~~i~~~~g--i~~~~q~l~~~g~~l~d~~~l~~~~i 61 (230)
+.|+.-+ -.-+.++|+ ...||..||+.|.+..+ ..-.+++|+|+|+.|.|+..|+..-.
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~ 66 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELK 66 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhc
Confidence 3444443 234667777 88999999999999984 44567788899999999888876543
No 135
>PRK06437 hypothetical protein; Provisional
Probab=96.36 E-value=0.039 Score=34.79 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=46.9
Q ss_pred cCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+++...++++...|+.+|-+.+ ++++....+..||.... .++-+++||.|.++.-..||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 5567788888888999887654 67888888889999887 66778999999887666555
No 136
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=96.27 E-value=0.018 Score=35.30 Aligned_cols=66 Identities=23% Similarity=0.461 Sum_probs=53.5
Q ss_pred cCceeEEEeeccchHHHHHHhhcccc---CCCCCceEEE-EcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~---~~~~~~~~l~-~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 226 (230)
+|+...++.+.+....-...+--+.. |-|+++..|. -+|.++|-++...+||+.+|-++++.++..
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKAG 73 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKAG 73 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeecc
Confidence 56777777777777777766665555 4688888887 788999999999999999999999988753
No 137
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.21 E-value=0.026 Score=35.74 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=54.5
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCC--C---CCcEEEEcCcccCCCcchhhhccccCCceEE
Q 026957 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP--P---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~--~---~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 145 (230)
+-++..+|.++.+.++...++..|-..+++...+. . ..++..-.++.|.++..|.+|+|.+|+.+.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 34455679999999999999999999998877643 2 2356667889999999999999999998754
No 138
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.02 Score=43.73 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=51.0
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcC-----ccc-CCCcchhhhccccCCceEEEEEee
Q 026957 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g-----~~L-~d~~~L~~~~i~~~~~i~l~~~~~ 150 (230)
....++.+.||++||.+++..+|.+++.+.|. |.+ ..| +++..|..|...+|-.||++-...
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~ 83 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNA 83 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCc
Confidence 45667889999999999999999999999987 555 245 457789999999999999875433
No 139
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.012 Score=45.08 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=55.9
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEE
Q 026957 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (230)
.++.+.+.+...+||.++|.+++...++.+..|+++++|..+-|...|..|++..|....+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence 46678888999999999999999999999999999999999999999999999999654443
No 140
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=96.01 E-value=0.05 Score=36.08 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=47.0
Q ss_pred ceeEEEeeccchHHHHHHhhccccCCCCCceEEE-EcC----eec-CCCCcccccCCCCCCEEEEEEEecCCCC
Q 026957 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG----KQL-EDGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 163 ~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g----~~l-~d~~~L~~~~i~~~~~i~~~~~~~~g~~ 230 (230)
...+..+..++||..+.+.+.+...+ ....||- +.. ..| +.+.|+.+.|+.+|..|.+--|-.+|.|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DGtW 86 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDGTW 86 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCCCC
Confidence 45778888999999999999999999 6667775 222 345 5668999999999999999999999976
No 141
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=95.89 E-value=0.026 Score=44.47 Aligned_cols=69 Identities=29% Similarity=0.400 Sum_probs=48.4
Q ss_pred eeeEEEeccC-eeEe-eecCCCChHHHHHHHHHhHh-CCCCCCcEEE----EcCcccCCCcchhhhccccCCceEE
Q 026957 77 MQIFVKTLTG-KTIT-LEVESSDTIDNVKAKIQDKE-GIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 77 ~~v~v~~~~g-~~~~-i~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~----~~g~~L~d~~~L~~~~i~~~~~i~l 145 (230)
|.|++...++ .... ...+...|+.+++..+.++. .+.+..+++. -+|+++-|+.+|++|+..+|+++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 3455554444 2333 56677889999997776654 5666544433 5789999999999999999977755
No 142
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=95.53 E-value=0.081 Score=42.57 Aligned_cols=119 Identities=18% Similarity=0.369 Sum_probs=81.1
Q ss_pred EEEEEcCCC--cEE----EEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc------ccccCCCcccccccccccceee
Q 026957 2 QIFVKTLTG--KTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~~~g--~~~----~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g------~~l~d~~~l~~~~i~~~~~i~l 69 (230)
-||+|..+- .++ .+-|+.+++|.++-..|.+..|.|++...++|.- ..++...++....+.+|+.|..
T Consensus 70 LlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~f 149 (249)
T PF12436_consen 70 LLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICF 149 (249)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEE
T ss_pred EEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEE
Confidence 467776642 122 3578999999999999999999999888888752 5578899999999999998887
Q ss_pred eeeec--------------------CceeeEEEec---cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026957 70 VLRLR--------------------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 70 ~~~~~--------------------~~~~v~v~~~---~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
-.... ..+.|.++.. .+..+.+.++...|-.+|-++|+++.+++|...+|+
T Consensus 150 Q~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 150 QRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp EE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred EeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 65442 1256666542 345789999999999999999999999999999987
No 143
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.50 E-value=0.03 Score=36.26 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=47.7
Q ss_pred eeccchHHHHHHhhccccC-CCCCceEEEEcCeecCCCCccccc-CCCCCCEEEEEEEe
Q 026957 169 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRL 225 (230)
Q Consensus 169 v~~~~tv~~lK~~i~~~~~-~~~~~~~l~~~g~~l~d~~~L~~~-~i~~~~~i~~~~~~ 225 (230)
|.++++|.++++.+..... .....+.|.++|..|+|...|.++ |+++|+++.++.+.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 4578999999999988765 356778999999999999999888 58999999888654
No 144
>PRK06437 hypothetical protein; Provisional
Probab=95.38 E-value=0.13 Score=32.45 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=48.4
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|.-+++..+++...++++.+.||.+|=+ ..|+++..-.+..+|..+. .++-+++++++.++.
T Consensus 1 ~~~~~~v~g~~~~~~~i~~~~tv~dLL~----~Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 1 MIAMIRVKGHINKTIEIDHELTVNDIIK----DLGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CcceEEecCCcceEEEcCCCCcHHHHHH----HcCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 3445656677889999999999999887 5689888777778999886 566677888887764
No 145
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=95.10 E-value=0.17 Score=32.83 Aligned_cols=58 Identities=26% Similarity=0.347 Sum_probs=45.2
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CceEEEe--c--c--ccccCCCcccccccc
Q 026957 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--A--G--KQLEDGRTLADYNIQ 62 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~l~~--~--g--~~l~d~~~l~~~~i~ 62 (230)
|..++|...++++++++|+.++=+.|.++.|+.. +.--|.+ . | .=|+.+++|.++...
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 5678999999999999999999999999999874 3345666 1 2 226777888887666
No 146
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=95.10 E-value=0.15 Score=33.11 Aligned_cols=67 Identities=25% Similarity=0.342 Sum_probs=50.5
Q ss_pred EEeccCceeEEEeeccchHHHHHHhhccccCCCC-CceEEEE----cC--eecCCCCcccccCCCCCC--EEEEEE
Q 026957 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF----AG--KQLEDGRTLADYNIQKES--TLHLVL 223 (230)
Q Consensus 157 v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~-~~~~l~~----~g--~~l~d~~~L~~~~i~~~~--~i~~~~ 223 (230)
|...+|....+++++++|+.+|-+.|+++.++.. +.+-|.+ +| .-|+.+++|.++....+. ++++.+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frv 76 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRV 76 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEE
Confidence 4567889999999999999999999999999854 4566767 22 346888999999887344 444443
No 147
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=95.01 E-value=0.077 Score=34.66 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=44.2
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeee
Q 026957 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.....++=.+++..||..++.+.|+.-+.-.++++...|+++++|.+.++.....+.+.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 4456778889999999999999999999999999987799999999999999888877653
No 148
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=95.00 E-value=0.18 Score=40.56 Aligned_cols=107 Identities=17% Similarity=0.347 Sum_probs=72.4
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC------cccCCCcchhhhccccCCceEEEEEeec------------
Q 026957 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG------------ 151 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g------~~L~d~~~L~~~~i~~~~~i~l~~~~~~------------ 151 (230)
.+-++.+++|+++-..|.+..|+|++.-.++|.- ..++...++....+.+|+.|.+......
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~ 167 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVK 167 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHH
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHH
Confidence 4567888999999999999999999876666543 3577899999999999998877664431
Q ss_pred --------ceeEEEEecc---CceeEEEeeccchHHHHHHhhccccCCCCCceEEE
Q 026957 152 --------GMQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 152 --------~~~i~v~~~~---~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~ 196 (230)
.+.+..+... +..+.+.++..+|-.+|-++|.++.+++|...+|.
T Consensus 168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 1344444322 34789999999999999999999999999999987
No 149
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=94.87 E-value=0.19 Score=39.42 Aligned_cols=102 Identities=22% Similarity=0.316 Sum_probs=56.3
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCC---CcEEE--EcCc---ccCCCcchhhhccccCCceEEEEE------ee--
Q 026957 87 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLR------LR-- 150 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~i~~~---~q~L~--~~g~---~L~d~~~L~~~~i~~~~~i~l~~~------~~-- 150 (230)
+.+.+-++.+.||++|...++++.+++.+ ..++. ++++ .+..+.++.+. .+...+.+-.- +.
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 45788899999999999999999998765 45554 4554 45667777776 23223333211 11
Q ss_pred --cceeEEEEecc-------CceeEEEeeccchHHHHHHhhccccCCCC
Q 026957 151 --GGMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPP 190 (230)
Q Consensus 151 --~~~~i~v~~~~-------~~~~~~~v~~~~tv~~lK~~i~~~~~~~~ 190 (230)
+.+.+.|.... |-.|.+.+.+..|+.++|+.|+++.|++.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 12333333322 44577889999999999999999999874
No 150
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=94.78 E-value=0.15 Score=33.13 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=35.1
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcc
Q 026957 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~ 125 (230)
++.+.+++..+..+|.++|.++.++|++...|.|....
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 88999999999999999999999999999999997643
No 151
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.074 Score=40.77 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=49.6
Q ss_pred eEEEeeccchHHHHHHhhccccCCCCCceEEE-EcC-----eec-CCCCcccccCCCCCCEEEEEE
Q 026957 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 165 ~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g-----~~l-~d~~~L~~~~i~~~~~i~~~~ 223 (230)
...+.++..|+++||.+++-.+|.+++.+.|. |+| ..| +++..|.+|...+|-.||++=
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 44556678899999999999999999999887 665 344 677899999999999998864
No 152
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=94.32 E-value=0.18 Score=32.77 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=34.0
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026957 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
++.|++.++.+..+|.++|.++.++|++.-.|.|..
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 899999999999999999999999999999999864
No 153
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=94.27 E-value=0.16 Score=33.64 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=38.6
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC---CCcEEEEcC
Q 026957 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFAG 123 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~---~~q~L~~~g 123 (230)
.+++.+.|+.+.+.+.++..+.+|++.|.++.|+.. ....|.|-.
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlD 50 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVD 50 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEc
Confidence 456788999999999999999999999999999886 466777644
No 154
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=94.21 E-value=0.26 Score=32.71 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=43.7
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC-----ccc-CCCcchhhhccccCCceEEEEEeec
Q 026957 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQL-EDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g-----~~L-~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
..+...++..+||+.+...+.+.+.| ....||.-.+ ..| +.+.|+.+.++.+|-+|.+-.+...
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~D 83 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNED 83 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TT
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccC
Confidence 35677899999999999999999999 6668876322 235 4467999999999998876665543
No 155
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.17 E-value=0.18 Score=32.62 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=45.5
Q ss_pred eeEEEeeccchHHHHHHhhccccCC----CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tv~~lK~~i~~~~~~----~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
...++++...|+.+|.+.+...++- ......+..||+... .+.-+++||.|.++--..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 3566777788999999999887642 234566778888776 45668999999998877776
No 156
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=94.17 E-value=0.12 Score=33.54 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=44.8
Q ss_pred cCCCChHHHHHHHHHhHhC-CCCCCcEEEEcCcccCCCcchhhhc-cccCCceEEEEE
Q 026957 93 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHLVLR 148 (230)
Q Consensus 93 v~~~~tV~~lK~~i~~~~~-i~~~~q~L~~~g~~L~d~~~L~~~~-i~~~~~i~l~~~ 148 (230)
|+++++|.++++-+..... ..-....|.++|..|++...+++.. +.+|+++.+...
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5678999999999988765 4556778899999999988888874 777887777643
No 157
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=94.15 E-value=0.26 Score=32.26 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=42.8
Q ss_pred eEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026957 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
+...++-+.++..||..++.+.++..+.+.++..+..|+++++|-+.|++-...+-+.+.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 455677788999999999999999999999998887799999999999998777777654
No 158
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=94.02 E-value=0.77 Score=29.09 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=43.2
Q ss_pred eeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
...+++++..|+.+|-+.+ ++++....+..||.... .+.-+++||.|.+.--..||
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEccccCC
Confidence 5667778888999998776 56667777779998874 36668999999887666665
No 159
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=93.83 E-value=0.38 Score=29.95 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=42.9
Q ss_pred EEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
++++...|+.+|.+.+. +++....+..||+.... ....++-+++||.|.+.--..||
T Consensus 9 ~~~~~~~tv~~ll~~l~----~~~~~i~V~vNg~~v~~-~~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 9 REVEEGATLAELLEELG----LDPRGVAVALNGEIVPR-SEWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEcCCCCCHHHHHHHcC----CCCCcEEEEECCEEcCH-HHcCceecCCCCEEEEEEeccCC
Confidence 44456778999987764 56777877799987754 35666779999999888777766
No 160
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=93.73 E-value=0.33 Score=31.90 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=35.9
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CceEEEec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA 46 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-~~q~l~~~ 46 (230)
|+|.+ +.+|....+.+.++++..+|+++|.++.++.. ..-.|.|.
T Consensus 1 ~~vK~-~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~ 46 (82)
T cd06407 1 VRVKA-TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL 46 (82)
T ss_pred CEEEE-EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence 45566 34789999999999999999999999999875 44455553
No 161
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=93.63 E-value=0.32 Score=29.89 Aligned_cols=65 Identities=23% Similarity=0.489 Sum_probs=49.6
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHh---CCCCCCcEEE-EcCcccCCCcchhhhccccCCceEEEEE
Q 026957 84 LTGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~---~i~~~~q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (230)
.+|+...++.+.+...--..++--+.. +-|+++..|. -+|..++-++.+.|||+.++-++.+.++
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 357777888777776655555554444 4688888887 6788999999999999999988877654
No 162
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=93.50 E-value=0.34 Score=32.11 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=36.6
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC---ceEEEe
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLIF 45 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~---~q~l~~ 45 (230)
..++...|+++-+.+.|++.+.+|++.|.++.|+... .-.|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 3577889999999999999999999999999999973 444444
No 163
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=93.34 E-value=0.53 Score=29.18 Aligned_cols=61 Identities=20% Similarity=0.395 Sum_probs=43.7
Q ss_pred cCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+|+.+ +++...|+.+|.+.+ ++++....+..||..... ....++-+++||.|.+..-..||
T Consensus 4 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~-~~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEPV--EVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPR-SEWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeEE--EcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCceecCCCCEEEEEEeccCC
Confidence 34444 345567899988765 455677777799987753 35667789999999887777666
No 164
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=93.30 E-value=0.26 Score=31.88 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=44.1
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCC----CCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 88 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i----~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
...++++...||.+|.+.+...++- ......+..||+... .+.-+.+|+.|.+.....||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 4567788889999999999988642 234556778888776 44568899999887655443
No 165
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=93.23 E-value=0.44 Score=30.48 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=39.6
Q ss_pred EEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcC
Q 026957 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g 199 (230)
+.+..++|+...+.+.+..|+.++-+.++++.|+.++.+.+...|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 456778999999999999999999999999999999988777543
No 166
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=93.22 E-value=0.59 Score=29.06 Aligned_cols=61 Identities=15% Similarity=0.321 Sum_probs=44.6
Q ss_pred ccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
.+|+.+.+ + ..|+.+|.+.+ ++++....+-.|+.... .....+.-+++||.|.++--..||
T Consensus 5 ~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 5 VNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred ECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 35666665 3 35899988765 55566666778998876 346778889999999887777666
No 167
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=93.18 E-value=0.43 Score=31.34 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=37.5
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEEEcCcc
Q 026957 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ 125 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~~ 125 (230)
|++ ..+|..+.+.++++.+..+|++.|++++++.. ....|.|...+
T Consensus 3 vK~-~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 3 VKA-TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred EEE-EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 444 35778899999999999999999999999865 67788886644
No 168
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=92.76 E-value=0.43 Score=30.51 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.3
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
+.|-..+|..-.+.+.|+.||.|+-+++.++.|+.++.=.+++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 456678999999999999999999999999999999888888764
No 169
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=92.67 E-value=0.62 Score=30.21 Aligned_cols=44 Identities=16% Similarity=0.341 Sum_probs=37.3
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
.|.+.. +|..+.+.++++.|..+|+++|.+.++++.....|.|.
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 345544 78899999999999999999999999998767777775
No 170
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=92.39 E-value=0.84 Score=29.58 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=38.3
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCc
Q 026957 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
.++++. ++..+.+.++.+.|..+|+++|+++++.+.....|.|.+.
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 345543 6778899999999999999999999998877888888754
No 171
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=92.31 E-value=0.89 Score=28.23 Aligned_cols=61 Identities=15% Similarity=0.270 Sum_probs=43.0
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|.|++ +|+.+.+ +..|+.+|.+. .++++..-.+..|++.+. .....+..+.+++.|.++..
T Consensus 1 m~i~~---Ng~~~~~---~~~tl~~Ll~~----l~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 1 MKLFV---NGETLQT---EATTLALLLAE----LDYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CEEEE---CCeEEEc---CcCcHHHHHHH----cCCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEe
Confidence 55555 7887777 34699999884 477775555667887764 45566777889999887643
No 172
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=91.79 E-value=1.4 Score=27.94 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=44.7
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeec
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
|+|.+... +....++++...||.+|-+.+ ++++....+..||..... +.-+++|+.|.+.....|
T Consensus 5 m~v~vng~-~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~G 69 (70)
T PRK08364 5 IRVKVIGR-GIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSG 69 (70)
T ss_pred EEEEEecc-ccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccC
Confidence 44555322 124677888889999998765 677777777789988743 555788998877654433
No 173
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=91.69 E-value=0.62 Score=29.76 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=49.9
Q ss_pred eeEEEeeccchHHHHHHhhccccCC--CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tv~~lK~~i~~~~~~--~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
...+.+....||.+|.+.+..++.- ......+..||+...+ ...+.-+++||+|.++--..||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5567777889999999999888631 2366788899998887 4677788999999887777666
No 174
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=0.08 Score=43.57 Aligned_cols=60 Identities=23% Similarity=0.417 Sum_probs=45.7
Q ss_pred ceeEEEEeccCc--eeEEEeeccchHHHHHHhhccccC-CCC-CceEEEEcCeecCCCCccccc
Q 026957 152 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG-IPP-DQQRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 152 ~~~i~v~~~~~~--~~~~~v~~~~tv~~lK~~i~~~~~-~~~-~~~~l~~~g~~l~d~~~L~~~ 211 (230)
.+.+.++..+.+ ...+..+...||++||..++..+- -|. ..|||+|.|+.|+|+..|.+.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~ 72 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW 72 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence 355677776654 455666677899999999998873 333 479999999999999888764
No 175
>smart00455 RBD Raf-like Ras-binding domain.
Probab=91.46 E-value=0.8 Score=29.08 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.5
Q ss_pred EEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026957 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
.|-..+|+...+.+.|+.|+.|+-+++.++.|+.++.-.++..|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45567899999999999999999999999999999888888755
No 176
>smart00455 RBD Raf-like Ras-binding domain.
Probab=91.31 E-value=0.58 Score=29.74 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.6
Q ss_pred EEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC
Q 026957 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 80 ~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
.+..++|+...+.+.++.|+.++-+.+.++.|+.++...++..|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 45578999999999999999999999999999999998888754
No 177
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=90.86 E-value=0.55 Score=39.64 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=55.3
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCC-CCCCcEEE--EcCcccCC-CcchhhhccccCCce
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 143 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~--~~g~~L~d-~~~L~~~~i~~~~~i 143 (230)
+.-.|.|+..+|......++.+.||.+++..|.....- +...+.|+ |-.++|.| +.||++.|+.+...+
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 34678899999999999999999999999999987753 44456666 67788865 679999999875544
No 178
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=90.70 E-value=1.3 Score=27.55 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=42.0
Q ss_pred cCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+|+.+.+ ++..|+.+|-+. .++++....+..++....-+ ..+.+ +++||.|.++--..||
T Consensus 6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~-~~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRS-DWATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChh-Hhhhh-cCCCCEEEEEeeccCC
Confidence 4554444 456788777654 36788888898999876532 44555 9999999887766665
No 179
>PRK07440 hypothetical protein; Provisional
Probab=90.66 E-value=1.6 Score=27.70 Aligned_cols=62 Identities=19% Similarity=0.352 Sum_probs=46.1
Q ss_pred ccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
.+|+. .+++...|+.+|-+. .++++....+-.||..+.- ....+.-+++||.|.++--..||
T Consensus 9 vNG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 9 VNGET--RTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred ECCEE--EEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 34554 455567788887653 3567788888899988763 46778889999999988777776
No 180
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=90.64 E-value=1.4 Score=29.10 Aligned_cols=62 Identities=11% Similarity=0.272 Sum_probs=46.8
Q ss_pred ccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
.+|+.+.+ ++..|+.+|-+.+ ++++....+-.||..+. ....+.+-+++||.|.++.-..||
T Consensus 23 VNG~~~~~--~~~~tl~~LL~~l----~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 23 INDQSIQV--DISSSLAQIIAQL----SLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred ECCeEEEc--CCCCcHHHHHHHc----CCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence 45665544 5567888876653 67888888889998885 457888899999999988777666
No 181
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=90.44 E-value=1.8 Score=26.87 Aligned_cols=61 Identities=18% Similarity=0.361 Sum_probs=44.3
Q ss_pred cCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+|+.+ ++++..|+.++-.. .++++....+..+|....- ....+.-+++||.|.+..-..||
T Consensus 6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r-~~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPR-SQHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCH-HHcCcccCCCCCEEEEEEEecCC
Confidence 45544 55567788887654 4677888888899977763 35666778999999988777766
No 182
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=0.12 Score=42.48 Aligned_cols=62 Identities=24% Similarity=0.419 Sum_probs=47.5
Q ss_pred eeeEEEeccC--eeEeeecCCCChHHHHHHHHHhHhCC-C-CCCcEEEEcCcccCCCcchhhhccc
Q 026957 77 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGI-P-PDQQRLIFAGKQLEDGRTLADYNIQ 138 (230)
Q Consensus 77 ~~v~v~~~~g--~~~~i~v~~~~tV~~lK~~i~~~~~i-~-~~~q~L~~~g~~L~d~~~L~~~~i~ 138 (230)
+.+.++..+. +...|..+...||++||..++..+.- | +.+|||+|.|+.|.|...|.+.=++
T Consensus 10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrk 75 (391)
T KOG4583|consen 10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRK 75 (391)
T ss_pred eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHH
Confidence 4455555544 45677788889999999999988752 2 4579999999999999988887543
No 183
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=90.24 E-value=1.7 Score=28.71 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=33.0
Q ss_pred EEEcC-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026957 4 FVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 4 ~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
.||.. +|.+..+.++++.+..+|.++|.++.|+. ..-.+.|.
T Consensus 4 kVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKyk 46 (86)
T cd06408 4 RVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMK 46 (86)
T ss_pred EEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEE
Confidence 34433 78999999999999999999999999995 23344453
No 184
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.17 E-value=0.67 Score=38.27 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=45.9
Q ss_pred EEeeccchHHHHHHhhccccCCCCCceEEEE---cC-----eecCCCCcccccCCCCCCEEEEE
Q 026957 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AG-----KQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 167 ~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~---~g-----~~l~d~~~L~~~~i~~~~~i~~~ 222 (230)
..+.-+-||.+++..+..+.|+.+.+++|++ +| ..++-+++|.+|.|++||.+.+-
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 4455567999999999999999999999985 33 34567789999999999998654
No 185
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=90.02 E-value=1.8 Score=28.03 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=44.1
Q ss_pred eeEEEeecc-chHHHHHHhhccccC-C--CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 164 TITLEVESS-DTIDNVKAKIQDKEG-I--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~-~tv~~lK~~i~~~~~-~--~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
...++++.. .|+.+|++.+.+++. + ....+.+..|++...+ +.-+++||+|.+.--..||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 346777766 899999999988874 1 1234566688887664 4678999999888777776
No 186
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=89.98 E-value=2.6 Score=26.77 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=36.4
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
+.|-.++|..-.+.+.|+.||.|.-+++.++.|+.++.-.++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 455567899999999999999999999999999999887777655
No 187
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=89.78 E-value=0.96 Score=41.28 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=38.7
Q ss_pred cCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccc
Q 026957 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~ 49 (230)
+.++..+.+-++++.|+..+++.|+..+|||...|.|+|.|..
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 3457788999999999999999999999999999999998644
No 188
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=89.66 E-value=1.2 Score=29.10 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=39.6
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhC-CCC--CCcEEEEcCcccCCCcchhhhccccCCceEEEEEeec
Q 026957 87 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~-i~~--~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
....++++...||++|.+.+..... +.. ....+..|++... .+.-+.+|++|.+.....|
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsG 81 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISG 81 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCC
Confidence 4467788888999999999977652 111 1234557777654 3445788999977654443
No 189
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=89.65 E-value=2.5 Score=26.18 Aligned_cols=61 Identities=16% Similarity=0.324 Sum_probs=43.1
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|.|+| +|+.+ ++..+.||.++-. ..|+++..-.+.++|..+... ...+.-+.+++++.++.
T Consensus 1 m~i~v---NG~~~--~~~~~~tl~~lL~----~l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 1 MNIQL---NGEPR--ELPDGESVAALLA----REGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVH 61 (66)
T ss_pred CEEEE---CCeEE--EcCCCCCHHHHHH----hcCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEE
Confidence 55555 77755 5567889998876 578998877888888766432 34555578888887764
No 190
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=89.52 E-value=2.4 Score=26.55 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=44.5
Q ss_pred cCceeEEEeecc-chHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 161 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~-~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+|+.+ +++.. .||.+|-+. .++++....+-.|+..+.- ...+.+-+++||.|.++.-..||
T Consensus 6 NG~~~--~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQI--EVPESVKTVAELLTH----LELDNKIVVVERNKDILQK-DDHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEEE--EcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 45544 44444 578777653 4677888888899988864 47788889999999988777766
No 191
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=89.47 E-value=1.5 Score=28.62 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=41.8
Q ss_pred ceeEEEeeccchHHHHHHhhccccC-CCC--CceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 163 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 163 ~~~~~~v~~~~tv~~lK~~i~~~~~-~~~--~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
....++++...|+.+|++.+..... +.. ....+..|++... .+.-+++||+|.+.--..||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence 4466777788899999999977651 111 2234557887754 34567899999887666665
No 192
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=89.40 E-value=2.8 Score=26.10 Aligned_cols=61 Identities=11% Similarity=0.195 Sum_probs=43.4
Q ss_pred cCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+|+.+.+ +...|+.+|.+.+ +.+.....+-.|+....- ...+.+-+++||.|.++-=..||
T Consensus 6 Ng~~~~~--~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQPMQC--AAGQTVHELLEQL----NQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeEEEc--CCCCCHHHHHHHc----CCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEccCC
Confidence 4555444 5567899888654 444556777899988753 35777789999999887766666
No 193
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=89.16 E-value=0.12 Score=42.40 Aligned_cols=62 Identities=19% Similarity=0.478 Sum_probs=0.0
Q ss_pred eeeEEEeccCeeEeeecC---C--CChHHHHHHHHHh----------HhCCCCCCcE-----EEEcCcccCCCcchhhhc
Q 026957 77 MQIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~---~--~~tV~~lK~~i~~----------~~~i~~~~q~-----L~~~g~~L~d~~~L~~~~ 136 (230)
+.|.++...+..+.+.+. + +.+|.++|..+++ ..++|.+.++ |.|+.+++.|.++|.+..
T Consensus 79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 555555555544434332 2 5789999999999 8899999998 999999999999998875
Q ss_pred cc
Q 026957 137 IQ 138 (230)
Q Consensus 137 i~ 138 (230)
-.
T Consensus 159 ~~ 160 (309)
T PF12754_consen 159 AD 160 (309)
T ss_dssp --
T ss_pred hc
Confidence 44
No 194
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.06 E-value=0.93 Score=36.49 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=56.9
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE--EcCeec---CCCCcccccCCCCCCEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l---~d~~~L~~~~i~~~~~i~~ 221 (230)
-.+.++..+|++...++++..|...++.-|.-+.+..++.+.|. |..... +-.++|..+++-+.+++.+
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 45788888999999999999999999999999999877777775 444444 3458999999999888754
No 195
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=88.95 E-value=1.6 Score=27.82 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=38.9
Q ss_pred EEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcC--eecCCC
Q 026957 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDG 205 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g--~~l~d~ 205 (230)
+.+..++++...+.+.+..|+.+.-..++++.++.++.+.++..| +.++-+
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~ 55 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWD 55 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TT
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCC
Confidence 567788999999999999999999999999999999988776433 445433
No 196
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=88.81 E-value=2.9 Score=27.66 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=40.2
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchh
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~ 133 (230)
++|.+. .+|....+.++++.+..+|.++|.+++++. ....+.|... .|-.|++
T Consensus 3 ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~ 55 (86)
T cd06408 3 IRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMG 55 (86)
T ss_pred EEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCcccc
Confidence 455554 467789999999999999999999999985 5667777665 4444443
No 197
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=88.69 E-value=1.8 Score=39.66 Aligned_cols=183 Identities=18% Similarity=0.232 Sum_probs=98.7
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe----ccccc--cCCCcccccccccccceeee--eee-cCceeeEE
Q 026957 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHLV--LRL-RGGMQIFV 81 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~----~g~~l--~d~~~l~~~~i~~~~~i~l~--~~~-~~~~~v~v 81 (230)
+.+.+.|+.-.+++.+|+-|++..++|.+.-++.- +|..+ .++.+|+.+ .++.+|.+. -.+ +++..++|
T Consensus 877 r~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI 954 (1203)
T KOG4598|consen 877 RFHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKI 954 (1203)
T ss_pred hheeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEE
Confidence 36789999999999999999999999998877762 23333 356677664 334443332 222 23333333
Q ss_pred Eec---cC---ee---EeeecCCCChHHHHHHHHHhHhC--------CCCCCcEEEEc-----Ccc-cCCCcchhhhccc
Q 026957 82 KTL---TG---KT---ITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFA-----GKQ-LEDGRTLADYNIQ 138 (230)
Q Consensus 82 ~~~---~g---~~---~~i~v~~~~tV~~lK~~i~~~~~--------i~~~~q~L~~~-----g~~-L~d~~~L~~~~i~ 138 (230)
..+ .+ .. +..-+..+.|+++.|..+-.+.. +...+.|+... |+. ++++.++.|-.-.
T Consensus 955 ~~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen 955 ILLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred EeehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhh
Confidence 332 11 11 23346778899998876544332 22333333322 222 3334444433200
Q ss_pred cCCceE-------EEE-EeecceeEEEEeccCce------eEEEeeccchHHHHHHhhccccCCCCCceEEE
Q 026957 139 KESTLH-------LVL-RLRGGMQIFVKTLTGKT------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 139 ~~~~i~-------l~~-~~~~~~~i~v~~~~~~~------~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~ 196 (230)
-.+... +.. ++-....++++-|.-.+ ..+.. ..+.+.++++.+++-.|||.++..+.
T Consensus 1035 ~~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~L-d~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVNPFQEVLL-DANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred hHHHHHHHHHHhhcccCCCCccchhhheeccccceecCCceeEEe-cCcchHHHHHHHHHhcCCchhhhhhh
Confidence 000000 000 11111344444443222 12222 34578999999999999999987664
No 198
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=88.62 E-value=1.5 Score=27.24 Aligned_cols=61 Identities=21% Similarity=0.416 Sum_probs=42.7
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+. ++++...||.+|.+.+ ++++....+..+|+....+ ...+.-+++|+.|.+.....||
T Consensus 5 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 5 NGEP--REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred CCeE--EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 4544 4556678999988775 4777788888888877543 3445668899999887655543
No 199
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=88.54 E-value=2.2 Score=27.66 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=42.1
Q ss_pred eEeeecCCC-ChHHHHHHHHHhHhC-C-C-CCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 88 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 88 ~~~i~v~~~-~tV~~lK~~i~~~~~-i-~-~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
...++++.+ .||.+|++.+..+.+ + . .....+..|++...+ +.-+++|+.|.+.....||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 356778766 899999999998874 1 1 133456678877664 4567889999887655443
No 200
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=88.37 E-value=0.91 Score=28.96 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=48.2
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCC--CCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 88 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
...+.+....||.+|.+.+..+..- ......+..||+...+ ...+.-+++|+.|.+.....||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5677888899999999999887741 2356777789988877 3667778999999887655443
No 201
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=88.33 E-value=3.5 Score=27.16 Aligned_cols=61 Identities=11% Similarity=0.273 Sum_probs=43.0
Q ss_pred eeEEEeeccchHHHHHHhhccccCC------C-----CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 164 TITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tv~~lK~~i~~~~~~------~-----~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
...++++ ..|+.+|.+.+.+++.- . .....+..||+..+.+.. .-+++||.|.+.--..||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4566665 78999999999887631 0 123566688887654421 568999999988777776
No 202
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=88.33 E-value=3.1 Score=26.20 Aligned_cols=58 Identities=19% Similarity=0.377 Sum_probs=44.8
Q ss_pred EEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+++++...|+++|-.. .+++++......||..... ....++-+++||.|.++.-..||
T Consensus 11 ~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr-~~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 11 EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPR-SQWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccc-hhhhhccccCCCEEEEEEeecCC
Confidence 4455556889888654 4677888888899988864 36778889999999988877776
No 203
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=87.88 E-value=4.2 Score=31.13 Aligned_cols=73 Identities=27% Similarity=0.342 Sum_probs=52.9
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCC-ceEEEE-c--C---eecCCCCcccccCCC-CCCEEEEEE
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A--G---KQLEDGRTLADYNIQ-KESTLHLVL 223 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~-~~~l~~-~--g---~~l~d~~~L~~~~i~-~~~~i~~~~ 223 (230)
...+.|...+|....+.+++++|++++...++.+.|++.. .+-|.+ . + .-++...++.+...+ ....+++..
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~ 82 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRV 82 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEE
Confidence 4567788889999999999999999999999999998543 345552 2 1 245666677776655 345665555
Q ss_pred E
Q 026957 224 R 224 (230)
Q Consensus 224 ~ 224 (230)
|
T Consensus 83 r 83 (207)
T smart00295 83 K 83 (207)
T ss_pred E
Confidence 5
No 204
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=87.86 E-value=2.8 Score=27.64 Aligned_cols=62 Identities=13% Similarity=0.286 Sum_probs=42.2
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCC------C-----CCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 87 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~i------~-----~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
....++++ ..||.+|.+.+.+++.- . .....+..||+....+.. ..+++|+.|.+.....||
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 34567776 88999999999887641 0 123556678877654422 568899999887665543
No 205
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=87.32 E-value=4.8 Score=24.99 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=41.3
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|.|+| +|+.+.+ ..+.|+.+|-+. .+.++..-.+-.|++.+. ....+++-+.+++.+.++-
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~-r~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIP-REQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeC-hHHcCccccCCCCEEEEEE
Confidence 55655 6776665 567899988874 566655556667887763 3445566688888887764
No 206
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=87.23 E-value=6.4 Score=30.10 Aligned_cols=63 Identities=29% Similarity=0.363 Sum_probs=46.6
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEEEcC------cccCCCcchhhhccc
Q 026957 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG------KQLEDGRTLADYNIQ 138 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g------~~L~d~~~L~~~~i~ 138 (230)
.+.+.|..++|....+.+++++|+.++...++.+.|++.. ...|.+-. ..++...++.+....
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 4567788899999999999999999999999999998543 23444321 235556677766544
No 207
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=87.16 E-value=3.5 Score=25.81 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=42.5
Q ss_pred CEEEEEcCCCcEEEEEecCC-CcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 1 MQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~-~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|.|+| +|+.+. +..+ .||.+|-+ ..++++..-.+-++|..+. ....+++-+++++.+.++-
T Consensus 1 m~I~v---NG~~~~--~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~-r~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 1 MNLKI---NGNQIE--VPESVKTVAELLT----HLELDNKIVVVERNKDILQ-KDDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred CEEEE---CCEEEE--cCCCcccHHHHHH----HcCCCCCeEEEEECCEEeC-HHHcCceecCCCCEEEEEE
Confidence 55555 788664 4454 57888776 6788887666778888764 4456667788888887753
No 208
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=87.04 E-value=0.19 Score=41.19 Aligned_cols=57 Identities=21% Similarity=0.454 Sum_probs=0.0
Q ss_pred cchHHHHHHhhcc----------ccCCCCCceE-----EEEcCeecCCCCcccccCCC-------CCCEEEEEEEecCC
Q 026957 172 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGG 228 (230)
Q Consensus 172 ~~tv~~lK~~i~~----------~~~~~~~~~~-----l~~~g~~l~d~~~L~~~~i~-------~~~~i~~~~~~~~g 228 (230)
+.+|.++|..+++ ..++|.+.++ |.|+-+.+-|+++|.+..-. .+.++.+.+-.-||
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGG 181 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGG 181 (309)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECC
Confidence 5799999999999 7889999888 99999999889999887654 46677776555555
No 209
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=86.94 E-value=1.2 Score=37.58 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=53.1
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCC-CCCceEEE--EcCeec-CCCCcccccCCCCCCE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQL-EDGRTLADYNIQKEST 218 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~-~~~~~~l~--~~g~~l-~d~~~L~~~~i~~~~~ 218 (230)
-.|.++.-+|+.....++.+.||.+++..|+..-.- +...|.|. |--+.| |++.||++-|+.+-..
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL 375 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence 468899999999999999999999999999987643 34456665 666777 7889999999987543
No 210
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=86.52 E-value=3.6 Score=26.67 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=36.0
Q ss_pred eeEEEeccCeeEe-eecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCc
Q 026957 78 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 78 ~v~v~~~~g~~~~-i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
.+++. .++.... +.++.+.+..+|+.+|++.++.+.....+.|.+.
T Consensus 3 ~vK~~-~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~ 49 (84)
T PF00564_consen 3 RVKVR-YGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDE 49 (84)
T ss_dssp EEEEE-ETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEET
T ss_pred EEEEE-ECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCC
Confidence 34443 3444455 8899899999999999999999988888888653
No 211
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=86.33 E-value=3 Score=28.36 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=35.0
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe
Q 026957 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~ 45 (230)
+...+|++.-+.|+.+.|..+|+.++.+..+++.. ..|.|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 45678999999999999999999999999999876 56655
No 212
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=86.25 E-value=1.9 Score=27.94 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=33.7
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026957 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
-++.|.+.++.+..+|..+|.++...+++.-.|.|.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 578889999999999999999999999999999985
No 213
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=85.99 E-value=2.7 Score=25.92 Aligned_cols=61 Identities=20% Similarity=0.398 Sum_probs=41.8
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+.+ +++.+.|+.+|.+.+ ++++....+..+|..+..+ ...++-+++|+.|.+.....||
T Consensus 4 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEPV--EVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeEE--EcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 45544 456677899988764 5677777777888877432 2455678999999887655443
No 214
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=85.81 E-value=3.2 Score=25.16 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=36.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
|+|+| +| -.+++..+.|..+||.++... .-.+.++|-+..++..|. +++.+.+
T Consensus 1 M~I~v---N~--k~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~~L~-----e~D~v~~ 53 (57)
T PF14453_consen 1 MKIKV---NE--KEIETEENTTLFELRKESKPD------ADIVILNGFPTKEDIELK-----EGDEVFL 53 (57)
T ss_pred CEEEE---CC--EEEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCccccC-----CCCEEEE
Confidence 66766 34 456778889999999976653 237789998887766654 4455544
No 215
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=85.65 E-value=1.5 Score=36.82 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=55.3
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCC--CcchhhhccccCCceEEEEE
Q 026957 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d--~~~L~~~~i~~~~~i~l~~~ 148 (230)
....+++.+..+-....|+..++..+|++.+..-++|+++++.+ ...+..+|+..++++.+.-+
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK 76 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence 55667888888889999999999999999999999999999865 46799999999998876544
No 216
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=85.27 E-value=5.7 Score=24.60 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=41.4
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeec
Q 026957 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
+|+.+. ++++.|+.+|-+. .++++...-+.+++..+..+. ...+ +++|+.|.++-...|
T Consensus 6 NG~~~~--~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgG 64 (65)
T PRK05863 6 NEEQVE--VDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQG 64 (65)
T ss_pred CCEEEE--cCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccC
Confidence 565544 4567788887754 578888889999998775432 2345 899999988755443
No 217
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=85.12 E-value=2.9 Score=26.87 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=32.5
Q ss_pred cCeeEeeecC-CCChHHHHHHHHHhHhCCCCCCcEEEEcCc
Q 026957 85 TGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 85 ~g~~~~i~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
+|....+.++ .+.|..+|+++|+++++.+.....+.|.+.
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~ 48 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDE 48 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCC
Confidence 3567788888 888999999999999998866667777653
No 218
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=84.75 E-value=4.7 Score=25.75 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=38.6
Q ss_pred EEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccc
Q 026957 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (230)
Q Consensus 5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~ 48 (230)
|-.++|.+-.+.+.|+.||.|+-.+.-++.|++++.=.++..|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 33578999999999999999999999999999998888887663
No 219
>PRK07440 hypothetical protein; Provisional
Probab=84.60 E-value=4.7 Score=25.49 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=40.8
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
+|+. .++..+.||.+|-. ..++++..-.+-+||..+. .....++-+.+++++.++-
T Consensus 10 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~-r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 10 NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILH-RQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeC-HHHcCceecCCCCEEEEEE
Confidence 6775 55677889998876 6688887667778888764 4456667788888887753
No 220
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=84.53 E-value=9.8 Score=25.48 Aligned_cols=41 Identities=12% Similarity=0.297 Sum_probs=32.1
Q ss_pred ccCeeEeeecCC-----CChHHHHHHHHHhHhCCCC-CCcEEEEcCc
Q 026957 84 LTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFAGK 124 (230)
Q Consensus 84 ~~g~~~~i~v~~-----~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~ 124 (230)
.+|....+.++. +.+..+|+++|++.+++++ ....|.|...
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~De 53 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDE 53 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECC
Confidence 456666666664 6899999999999999987 5677778653
No 221
>KOG4261 consensus Talin [Cytoskeleton]
Probab=84.44 E-value=5.1 Score=37.14 Aligned_cols=108 Identities=25% Similarity=0.332 Sum_probs=81.8
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhC---CCCCCcEEEE------cCcccCCCcchhhhccccCCceEEEEEeecceeEE
Q 026957 86 GKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~------~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
+-..++.+.|+++|-+--.-|.+++. .-+....|+. .|-.|+.++++.+|-+.+++++...- .+..+.
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~---k~r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKR---KQRPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhh---hcccce
Confidence 44568899999999998888877764 2255555553 23568899999999999999885432 334567
Q ss_pred EEeccCceeEEEeeccchHHHHHHhhccccCCC-CCceEEE
Q 026957 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI 196 (230)
Q Consensus 157 v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~-~~~~~l~ 196 (230)
++...|..-++.++...+|.+|.--|+.+.||. .+.+.|.
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslv 129 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLV 129 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCccchhhhhhh
Confidence 778888888999999999999999999999873 3444443
No 222
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=84.15 E-value=1.7 Score=36.44 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=60.3
Q ss_pred CEEEEEcC--CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC--Ccccccccccccceeeeeee
Q 026957 1 MQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~--~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~--~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.++|.+. .-..+++++..+-....++..++...|++...-.+.|+++.+.+. ..+.++|++.++.+.+.-+.
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks 77 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKS 77 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCC
Confidence 44444443 556889999999999999999999999999988999999998765 68999999999987775443
No 223
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=83.97 E-value=5.7 Score=28.12 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=48.6
Q ss_pred cCceeeEEEecc---CeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhcc---ccCCceEEEE
Q 026957 74 RGGMQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI---QKESTLHLVL 147 (230)
Q Consensus 74 ~~~~~v~v~~~~---g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i---~~~~~i~l~~ 147 (230)
++.+.|.|.-.. .+...+-|+.+.||+++...|.++.+++++..-|+.++..+..+.++++.-- .+++-+++..
T Consensus 25 PdrIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Y 104 (121)
T PTZ00380 25 PGHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSV 104 (121)
T ss_pred CCccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEE
Confidence 345555555322 2223336999999999999999999999998555567766666667766432 2344555543
No 224
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=83.79 E-value=4.8 Score=26.02 Aligned_cols=43 Identities=21% Similarity=0.405 Sum_probs=34.7
Q ss_pred EEEEcCCCcEEE-EEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026957 3 IFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 3 v~v~~~~g~~~~-~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
|.+.. +|.... +.+.++.|..+|+.+|.+.++.+...-.+.|.
T Consensus 4 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 4 VKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 44433 455555 99999999999999999999999777788885
No 225
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=83.36 E-value=8.2 Score=23.67 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=40.0
Q ss_pred cCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+|+.+ ++++..|+.+|.+.+.- + ....+..||.....+ ...+.-+++||+|.++-=..||
T Consensus 6 Ng~~~--~~~~~~tl~~ll~~l~~----~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQTL--SLPDGATVADALAAYGA----R-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCEEE--ECCCCCcHHHHHHhhCC----C-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence 44544 44566789998876633 2 235666888776532 3556668999999888777666
No 226
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=83.30 E-value=5.4 Score=26.10 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=31.7
Q ss_pred eccCeeEeeecCC--CChHHHHHHHHHhHhCCCCCCcEEEEcC
Q 026957 83 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 83 ~~~g~~~~i~v~~--~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
..+|....+.+++ +.+..+|++.+..+++++ ...|.|-.
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKYlD 46 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKYVD 46 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEEEc
Confidence 3677888888888 779999999999999999 56665543
No 227
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=82.87 E-value=3.7 Score=26.34 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=35.2
Q ss_pred EEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE
Q 026957 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 156 ~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~ 196 (230)
.|...+|+...+.+.+.+|++++-+..+.+.++.|+..-|-
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lr 43 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLR 43 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeE
Confidence 45678899999999999999999999999999988765443
No 228
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=82.76 E-value=3.1 Score=26.91 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.8
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC
Q 026957 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 123 (230)
++.+.+++..+.++|..+|+++...+++...|.|..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 567888999999999999999999999999999864
No 229
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=82.71 E-value=6.8 Score=25.80 Aligned_cols=60 Identities=12% Similarity=0.220 Sum_probs=43.4
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeec
Q 026957 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
+|+.+ +++...||.+|-.. .++++...-+-.||..+.. ....++-+++|+.|.++-...|
T Consensus 24 NG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~~VgG 83 (84)
T PRK06083 24 NDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQAIAG 83 (84)
T ss_pred CCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEEEecC
Confidence 56544 45667788888765 4788888888899988743 4567777999999988755444
No 230
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=82.44 E-value=5.9 Score=25.40 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=34.1
Q ss_pred EEEEEcCCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026957 2 QIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
.|.+.. +|..+.+.+. .+.|..+|+++|.+..+.+...-.+.|.
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 345544 4688889888 9999999999999999998644555553
No 231
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.40 E-value=1.9 Score=35.71 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=43.8
Q ss_pred eecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC---c-----ccCCCcchhhhccccCCceEEE
Q 026957 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K-----QLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 91 i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g---~-----~L~d~~~L~~~~i~~~~~i~l~ 146 (230)
.-+.-.-||.+++..+..+.|+.+.+++|++-. + .+.-+.+|.+|.|++|+.+.+.
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 345556799999999999999999999998643 2 2344678888889999887553
No 232
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=82.14 E-value=2.5 Score=29.79 Aligned_cols=55 Identities=20% Similarity=0.484 Sum_probs=37.3
Q ss_pred ecC-CCcHHHHHHHhhhh----hCCCCCce------EEEec-----------------cccc---cCCCccccccccccc
Q 026957 17 VES-SDTIDNVKAKIQDK----EGIPPDQQ------RLIFA-----------------GKQL---EDGRTLADYNIQKES 65 (230)
Q Consensus 17 v~~-~~tv~~lK~~i~~~----~gi~~~~q------~l~~~-----------------g~~l---~d~~~l~~~~i~~~~ 65 (230)
|+. +.|+.+|++.|.+. .|+||.+- +++.. ...| +++.+|.++|+.+++
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 565 88999988776555 57777432 22221 1345 677899999999998
Q ss_pred ceeeee
Q 026957 66 TLHLVL 71 (230)
Q Consensus 66 ~i~l~~ 71 (230)
.|.++-
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 877653
No 233
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=81.74 E-value=10 Score=25.08 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=43.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCc-EEE-Ec-----CcccCCCcchhhh
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI-FA-----GKQLEDGRTLADY 135 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~-~~-----g~~L~d~~~L~~~ 135 (230)
.-|.|...+|....+.|+...|++++-+.+..+.....+.- .|+ +. .+.++|...+-++
T Consensus 3 ~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 34677788999999999999999999999999998665543 343 22 2456776665444
No 234
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=81.55 E-value=6.8 Score=32.75 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=48.4
Q ss_pred cCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~~ 230 (230)
+|+. +++++..|+.+|-+. .+++++...+..||..+.- ....++-+++||.|.++--..||.+
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~VgGGs~ 68 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHFVGGGSD 68 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEEecCCCC
Confidence 4554 444566788877654 3678888888899988853 4678888999999999998888864
No 235
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=81.44 E-value=8.1 Score=34.05 Aligned_cols=71 Identities=14% Similarity=0.164 Sum_probs=54.6
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCC----C--CCCcEEE-EcCcccCCCcchhhhccccCCceEEEEEe
Q 026957 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----P--PDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i----~--~~~q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (230)
+|+|...+ +...+.++.+..|+++-..+-+..+- + +....|. .+|.+|+.+.||.+.|+.||+.+++....
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 45665443 45788899999999999998887763 1 2334454 57789999999999999999999887643
No 236
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=81.44 E-value=2.6 Score=29.75 Aligned_cols=56 Identities=21% Similarity=0.480 Sum_probs=39.3
Q ss_pred eec-cchHHHHHHhhcccc----CCCC------CceEEEE----------------cC-eec---CCCCcccccCCCCCC
Q 026957 169 VES-SDTIDNVKAKIQDKE----GIPP------DQQRLIF----------------AG-KQL---EDGRTLADYNIQKES 217 (230)
Q Consensus 169 v~~-~~tv~~lK~~i~~~~----~~~~------~~~~l~~----------------~g-~~l---~d~~~L~~~~i~~~~ 217 (230)
++. +.|+.+|++.+.+.. |++| +..++++ +. ..| +++++|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 789999988887755 4432 2334432 11 466 788999999999999
Q ss_pred EEEEEEE
Q 026957 218 TLHLVLR 224 (230)
Q Consensus 218 ~i~~~~~ 224 (230)
.|.+..+
T Consensus 102 EiSfF~~ 108 (122)
T PF10209_consen 102 EISFFNM 108 (122)
T ss_pred eeeeeCH
Confidence 9977654
No 237
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=81.13 E-value=4.8 Score=36.98 Aligned_cols=43 Identities=23% Similarity=0.475 Sum_probs=38.3
Q ss_pred eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcc
Q 026957 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125 (230)
Q Consensus 83 ~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~ 125 (230)
..++..+.+.++++.|...++..|...+|+|...|.|.|.|..
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 3466778999999999999999999999999999999988754
No 238
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=80.95 E-value=8.1 Score=25.26 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=32.5
Q ss_pred EEEEEcCCCcEEEEEecC--CCcHHHHHHHhhhhhCCCCCceEEEe
Q 026957 2 QIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 45 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~--~~tv~~lK~~i~~~~gi~~~~q~l~~ 45 (230)
+|.+ +.+|.+..+.++| +.|..+|++.|..+.+++ .-.|-|
T Consensus 2 ~vKa-ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 2 NLKV-TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EEEE-EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 3444 3478999999999 779999999999999999 334444
No 239
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=80.93 E-value=2 Score=30.35 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=33.9
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccc
Q 026957 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~ 58 (230)
...+-|+.+.||+++...|.++.++++++--|+.++..+..+.++++
T Consensus 42 ~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 42 VHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 33346899999999999999999999988333345544444445544
No 240
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=80.60 E-value=5.6 Score=25.40 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=38.5
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCc
Q 026957 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
|..++|+.-.+.+.+..||.+.-.++.++.|++++...++.-|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 44688998899999999999999999999999999888886553
No 241
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=79.22 E-value=11 Score=22.90 Aligned_cols=48 Identities=13% Similarity=0.302 Sum_probs=34.8
Q ss_pred EEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026957 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 166 ~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
.++++...|..+||.++..... .++++|=...++ +-+++||.|.+.-|
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~~d-----~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPDAD------IVILNGFPTKED-----IELKEGDEVFLIKK 56 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCCCC------EEEEcCcccCCc-----cccCCCCEEEEEeC
Confidence 4566677899999988776432 567899766554 55678999988754
No 242
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=78.48 E-value=9.9 Score=33.51 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=55.8
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCC----CCCceEEE---eccccccCCCcccccccccccceeeeeee
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi----~~~~q~l~---~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
||+|... .+...+-++.+.+|.|+-..+.+..|= +.....+. .+|..|+.+.||.+.++.+|+.+++....
T Consensus 4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 5777654 466888899999999999999988764 22223333 46899999999999999999999998643
No 243
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=78.33 E-value=8.2 Score=25.48 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=33.5
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
|.|-..+|....+.|++.+|++++-+.+..+.+..+..-
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~ 43 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSS 43 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCC
Confidence 556667899999999999999999999999998776433
No 244
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.04 E-value=8.1 Score=31.29 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=56.3
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccC---CCcchhhhccccCCceEE
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 145 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~L~~~~i~~~~~i~l 145 (230)
..-.+.|+..+|++....++...|...++.-|.-..+...+...|. |-...+. -.++|...++.+.+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 3457888899999999999999999999999999999877666665 3334442 256899999988887643
No 245
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=77.79 E-value=12 Score=24.74 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=30.2
Q ss_pred EEee-ccchHHHHHHhhcc-ccCCCC-C---ceEEEEcCee----cCCCCcccccCCCCCCEEEEE
Q 026957 167 LEVE-SSDTIDNVKAKIQD-KEGIPP-D---QQRLIFAGKQ----LEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 167 ~~v~-~~~tv~~lK~~i~~-~~~~~~-~---~~~l~~~g~~----l~d~~~L~~~~i~~~~~i~~~ 222 (230)
+.++ ...|+.+|-+.|.+ +.|... + .-.++|.... -...++|+++||.+|+.+.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3444 35799999887755 556422 2 2344444432 235689999999999988763
No 246
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=77.55 E-value=8.3 Score=26.18 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=33.9
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE
Q 026957 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~ 121 (230)
++..+|++..+.|+.+.|..+|++++++.++++.. +.+.|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 34568899999999999999999999999998876 55554
No 247
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=77.44 E-value=8.1 Score=24.82 Aligned_cols=40 Identities=8% Similarity=0.119 Sum_probs=35.1
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026957 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
|-.++|+...+.+.++.|+.++-+..+++.++.|+.--|.
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lr 43 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLR 43 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeE
Confidence 5568899999999999999999999999999988876554
No 248
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=76.37 E-value=9 Score=25.05 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=41.0
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE-eccccccCCCcccccccccccceeeee
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
+..+...++...||.++-+ ..|+|...-.+. .||+..+-+ |-+.+|+++.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 4678889999999999877 899998777655 688876543 5667788877754
No 249
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=75.74 E-value=15 Score=24.91 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=33.3
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEE
Q 026957 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 120 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~ 120 (230)
|.|--.++...++.++.++||+++-..+.+++.++. .+.+|.
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 344456777789999999999999999999998776 444544
No 250
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=75.44 E-value=16 Score=22.33 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=37.9
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
+|+. +++++..|++++.+.+ +++ ....+..+|...... ...+.-+++|++|.+.-...||
T Consensus 6 Ng~~--~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQT--LSLPDGATVADALAAY----GAR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCEE--EECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence 4554 4556778999988765 333 235566788765432 2344458889999887655443
No 251
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=75.10 E-value=4.7 Score=36.14 Aligned_cols=65 Identities=35% Similarity=0.526 Sum_probs=42.1
Q ss_pred CceeEEEeeccchHHHHHHhhcccc--CCC------CCceEEEE--c--Ce-ecCCC-------------CcccccCCCC
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF--A--GK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~--~~~------~~~~~l~~--~--g~-~l~d~-------------~~L~~~~i~~ 215 (230)
...+++.|-..|||.++|++|-... +.| ++..-|.| + |+ .|.|. .||+.|+|++
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3568888888999999999986533 222 34455553 2 22 44332 4899999999
Q ss_pred CCEEEEEEEec
Q 026957 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 ~~~i~~~~~~~ 226 (230)
|+++-++.++.
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99999998864
No 252
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=74.76 E-value=8.6 Score=25.48 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=36.4
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceE
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.|-.++|....+.+..+++-.++-+.+..+.|+|.+.+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 45666789999999999999999999999999999987664
No 253
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=72.89 E-value=5.8 Score=26.80 Aligned_cols=36 Identities=33% Similarity=0.659 Sum_probs=26.2
Q ss_pred EEEEcCeecCCCCccccc-CCCCCCEEEEEEEecCCC
Q 026957 194 RLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 194 ~l~~~g~~l~d~~~L~~~-~i~~~~~i~~~~~~~~g~ 229 (230)
.|-|.|+.|..+++|.+| |-.+-+.|.+-+..+|++
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~g 39 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQG 39 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCCCC
Confidence 466899999999999998 344555666666666654
No 254
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=72.80 E-value=7.1 Score=25.28 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=29.8
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEE
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l 43 (230)
.+.+.+.|++++|=.++|..|+..+|+.+..-.-
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 3689999999999999999999999998865443
No 255
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=72.45 E-value=21 Score=22.43 Aligned_cols=57 Identities=18% Similarity=0.349 Sum_probs=42.2
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeec
Q 026957 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
+++++...|+++|-+. .++++...-...||.....+ ...+.-+++|+.|.++-...|
T Consensus 11 ~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~G 67 (68)
T COG2104 11 EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGG 67 (68)
T ss_pred EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecC
Confidence 4566666899998765 67888888888999887653 356677888898877654433
No 256
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=72.13 E-value=6.8 Score=26.30 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=33.1
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEE-Eecccc
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQ 49 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l-~~~g~~ 49 (230)
.+.+.+.|++.+|=.|+|+.|+..+|+++..-.- ...|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 5789999999999999999999999999865543 355543
No 257
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=72.12 E-value=15 Score=24.56 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=29.5
Q ss_pred CCcEEEEEec-----CCCcHHHHHHHhhhhhCCCC-CceEEEec
Q 026957 9 TGKTITLEVE-----SSDTIDNVKAKIQDKEGIPP-DQQRLIFA 46 (230)
Q Consensus 9 ~g~~~~~~v~-----~~~tv~~lK~~i~~~~gi~~-~~q~l~~~ 46 (230)
+|...-+.++ ++.+..+|+++|.+.+++++ ..-.|.|.
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 6666666666 57999999999999999998 44455564
No 258
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=71.76 E-value=6.6 Score=35.20 Aligned_cols=65 Identities=35% Similarity=0.520 Sum_probs=41.1
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEEc-C---c-ccCCC-------------cchhhhcccc
Q 026957 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLEDG-------------RTLADYNIQK 139 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~-~L~d~-------------~~L~~~~i~~ 139 (230)
...+.+.|-..|||.++|++|-+.. +.| +++.-|.|. | . .|.|. .||+.|++++
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3457888889999999999997643 222 344445432 2 1 23321 4899999999
Q ss_pred CCceEEEEEee
Q 026957 140 ESTLHLVLRLR 150 (230)
Q Consensus 140 ~~~i~l~~~~~ 150 (230)
|+++.+..+..
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99998887654
No 259
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=71.64 E-value=15 Score=24.06 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=40.6
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCcccCCCcchhhhccccCCceEEEE
Q 026957 86 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
+..+...++...||.++-+. .|+|....-++ .||+...-+ |-+++|+.|.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 45677889999999987654 79999998776 688766443 6677899887753
No 260
>KOG4261 consensus Talin [Cytoskeleton]
Probab=71.54 E-value=14 Score=34.48 Aligned_cols=101 Identities=26% Similarity=0.338 Sum_probs=78.7
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCC---CCceEEEec------cccccCCCcccccccccccceeeeeeecCceeeE
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~---~~~q~l~~~------g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
+-.-++.+.|+.+|.|--..|.+++... +..-.|+.. |--|++..+|.+|-+.+++++...-+ .-...
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k---~r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRK---QRPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhh---cccce
Confidence 5577899999999999888777775322 444455542 45588899999999999988766432 34567
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCC
Q 026957 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 113 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~ 113 (230)
+++++|..-++.++.+.+|.+|---|+.+.||.
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCcc
Confidence 888999989999999999999999999888874
No 261
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=71.12 E-value=32 Score=23.87 Aligned_cols=47 Identities=4% Similarity=0.197 Sum_probs=36.7
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCccc--CCCcchhh
Q 026957 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLAD 134 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L--~d~~~L~~ 134 (230)
.-...+++++|++.+-..+.+..+++++++.+.|-+.-. ..+..+..
T Consensus 46 ~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~ 94 (116)
T KOG3439|consen 46 KSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGN 94 (116)
T ss_pred cceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHH
Confidence 356789999999999999999999999999888766544 23444443
No 262
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=70.89 E-value=20 Score=22.90 Aligned_cols=67 Identities=15% Similarity=0.304 Sum_probs=40.4
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhC-CCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeEEE
Q 026957 11 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 82 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~g-i~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~ 82 (230)
+.|-.-..|+.|+.+|+..|.++.. +=|....+.. ..|+|.. .|.+.+...+.=+....+.++|.++
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I--~~LQD~~---~cDLD~d~~V~DVf~~~~~vrvi~~ 70 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEI--LSLQDSD---GCDLDPDFLVKDVFNSNNVVRVILK 70 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceE--EEeecCC---CCCCCcccEeeeeeccCCEEEEEec
Confidence 4455567899999999999999976 2333334443 3455542 4666666655544444444444443
No 263
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=70.12 E-value=19 Score=24.79 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=38.6
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCC-cEEEEcCcccCCCcchhhhcc---ccCCceEEEE
Q 026957 90 TLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLADYNI---QKESTLHLVL 147 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~~L~~~~i---~~~~~i~l~~ 147 (230)
.+-++.+.||+++...|..+..++++. .-|+.++.....+.++++.-- .+++-+++..
T Consensus 36 KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~Y 97 (104)
T PF02991_consen 36 KFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMTY 97 (104)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEEE
T ss_pred EEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEEe
Confidence 345788999999999999999998875 344467755677778876532 3445555543
No 264
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=69.92 E-value=9.8 Score=25.21 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=34.7
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCc
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~ 192 (230)
+.+.+..++|....+++..+++..++-+.++.+.|+|.+.
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 3456677889999999999999999999999999998764
No 265
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=69.78 E-value=9.3 Score=25.19 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=29.8
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEE
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l 43 (230)
.+.+.+.|++.+|=.++|+.|+..+|+.+..-.-
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT 54 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNT 54 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 4689999999999999999999999999865443
No 266
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=69.63 E-value=8.5 Score=36.07 Aligned_cols=64 Identities=17% Similarity=0.377 Sum_probs=49.3
Q ss_pred cCceeEEEeec-cchHHHHHHhhccccCCCCCceEEE-EcCeecCCCCcccccCC--CCCCEEEEEEE
Q 026957 161 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNI--QKESTLHLVLR 224 (230)
Q Consensus 161 ~~~~~~~~v~~-~~tv~~lK~~i~~~~~~~~~~~~l~-~~g~~l~d~~~L~~~~i--~~~~~i~~~~~ 224 (230)
.|+..++..+. +.|+.+||.+|+.++|.....+.|. -+|..|+.++.+..|.. .+.+-|++..+
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnk 70 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNK 70 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEeeh
Confidence 46677777664 5699999999999999999988887 56778999999998874 34445655533
No 267
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=68.87 E-value=29 Score=24.21 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=38.9
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcE-EEEcCcccCCCcchhhhcc---ccCCceEEEE
Q 026957 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLADYNI---QKESTLHLVL 147 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~q~-L~~~g~~L~d~~~L~~~~i---~~~~~i~l~~ 147 (230)
.+-|+.+.||+++...|.++..++++.-- |+.++.....+.++++.-- .+++.+++..
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Y 105 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTY 105 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEE
Confidence 45689999999999999999998887644 4455544455666665432 1244555543
No 268
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=67.70 E-value=7.6 Score=25.95 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=32.6
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCceE-EEecccc
Q 026957 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~-l~~~g~~ 49 (230)
+.+++.|++++|=.|+|+.|+..+|+++..-+ +.+.|+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 67999999999999999999999999985554 3356653
No 269
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=67.68 E-value=14 Score=34.25 Aligned_cols=96 Identities=20% Similarity=0.264 Sum_probs=61.5
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE----cCccc--CCCcchhhhccccCCceEEEE--Eeec-ceeEEEE
Q 026957 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHLVL--RLRG-GMQIFVK 158 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~----~g~~L--~d~~~L~~~~i~~~~~i~l~~--~~~~-~~~i~v~ 158 (230)
.+.+.|+...+++.+|+.|++..+++.+..++.. +|..+ .++.+|+.. .++++|.+.+ .+.. ...+.+.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEEE
Confidence 5788899999999999999999999999998872 23333 456677764 4666665543 2222 2223333
Q ss_pred ec----cC-ce----eEEEeeccchHHHHHHhhccc
Q 026957 159 TL----TG-KT----ITLEVESSDTIDNVKAKIQDK 185 (230)
Q Consensus 159 ~~----~~-~~----~~~~v~~~~tv~~lK~~i~~~ 185 (230)
.. +. .. +..-++.++|+.+.|..+-.+
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~ 991 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRM 991 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHH
Confidence 22 11 11 233456788998887665443
No 270
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=66.07 E-value=31 Score=21.99 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=48.2
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCcccCCCcchhhhccccCCceEEEEEee
Q 026957 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (230)
.+.|++......+-.-.++++++|+...-++ -.|.-++..++-..+-++.|+.+.+..|.+
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 4578888888888888899999998877666 556677888888888889999888776543
No 271
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=65.83 E-value=23 Score=23.25 Aligned_cols=29 Identities=28% Similarity=0.293 Sum_probs=26.8
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (230)
+...++.|++++|..++-..+.+++++..
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~ 43 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTD 43 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 66789999999999999999999999975
No 272
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=65.78 E-value=23 Score=23.03 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=29.7
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHhCCC--CCCcEEE
Q 026957 86 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 120 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~~i~--~~~q~L~ 120 (230)
+....+.++.++|..++-+.+.+++++. +....|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6667899999999999999999999987 5556665
No 273
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=65.71 E-value=28 Score=29.17 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=47.1
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.|+| +|+. .++..+.||.+|-+ ..+++++.-.+.+||+.+ +.....++-+.+++.|.++--.
T Consensus 1 M~I~V---NGk~--~el~e~~TL~dLL~----~L~i~~~~VAVeVNgeIV-pr~~w~~t~LkeGD~IEII~~V 63 (326)
T PRK11840 1 MRIRL---NGEP--RQVPAGLTIAALLA----ELGLAPKKVAVERNLEIV-PRSEYGQVALEEGDELEIVHFV 63 (326)
T ss_pred CEEEE---CCEE--EecCCCCcHHHHHH----HcCCCCCeEEEEECCEEC-CHHHcCccccCCCCEEEEEEEe
Confidence 55555 6775 45567789998877 568998887888899877 4455677779999999887554
No 274
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=65.52 E-value=15 Score=25.28 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=29.4
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceEEE-eccccccCCCcccc
Q 026957 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~~l~d~~~l~~ 58 (230)
+-|+.+.||+++...|.++..+++++=.++ .++..+..+.++++
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 347899999999999999999998643333 45544445556654
No 275
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=65.44 E-value=23 Score=24.53 Aligned_cols=36 Identities=6% Similarity=0.182 Sum_probs=31.9
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026957 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
.-...|++.+|++.+-..+....+++...|.+.|-+
T Consensus 46 ~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN 81 (116)
T KOG3439|consen 46 KSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVN 81 (116)
T ss_pred cceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEc
Confidence 456788999999999999999999999999888754
No 276
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=64.80 E-value=12 Score=35.13 Aligned_cols=62 Identities=18% Similarity=0.387 Sum_probs=47.0
Q ss_pred cCeeEeeecCC-CChHHHHHHHHHhHhCCCCCCcEEEE-cCcccCCCcchhhhccc--cCCceEEE
Q 026957 85 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQ--KESTLHLV 146 (230)
Q Consensus 85 ~g~~~~i~v~~-~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~~L~~~~i~--~~~~i~l~ 146 (230)
.|+...++.+. ..|+++||..|+...|+....+.+.- +|..+..++.+..|.-- +.+-|++.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 46677777765 45999999999999999999998884 56678888889888742 33345444
No 277
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=64.49 E-value=29 Score=22.02 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=41.6
Q ss_pred EEEeeccchHHHHHHhhccccCCCCCceEEE-EcCeecCCCCcccccCCCCCCEEEEE
Q 026957 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 166 ~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g~~l~d~~~L~~~~i~~~~~i~~~ 222 (230)
.++|++......+-+..++...+|+....++ -+|.-....++-.+..++.|+.+.++
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 3667777777777667788889998888777 56667788889988889999988764
No 278
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=64.34 E-value=7.9 Score=26.06 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=34.4
Q ss_pred eecCCCChHHHHHHHHHhHhCCCCCCcEEE-------------EcCcccCCCcch--hhhccccCCceEEEEEeecc
Q 026957 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------------FAGKQLEDGRTL--ADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 91 i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-------------~~g~~L~d~~~L--~~~~i~~~~~i~l~~~~~~~ 152 (230)
+..+...||.++-+.+.+.+. .....++ .||... ..+ .++-+++|++|.+.....+|
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~di---~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDTDW---ELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCccc---cccCCcccCCCCcCEEEEECCCCCC
Confidence 344457799999999988762 2233332 333221 223 35678899999887655443
No 279
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=64.31 E-value=32 Score=22.34 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=24.7
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCC
Q 026957 12 TITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
.-++.|++++|+.+|-+.+-.++|++
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~ 43 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLA 43 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 88999999999999999999999993
No 280
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.26 E-value=7.5 Score=33.83 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=50.5
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEE
Q 026957 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
..++.+..-|-.++...|++++|++-+..+.+.+|+.+.-.+||.+-|++.+....+.+
T Consensus 52 ~l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~ 110 (568)
T KOG2561|consen 52 NLKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAV 110 (568)
T ss_pred hhhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHh
Confidence 34566667788999999999999999999999999999999999999998877654443
No 281
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=63.81 E-value=21 Score=23.12 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=33.1
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEe--ccccccCCCcccccccccccceeeeee
Q 026957 21 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~--~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.+..||+.+..+.++++.+.-+|.+ +|-.++|+.-+.. + +..+..+++.
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--L-p~nT~lm~L~ 71 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--L-PDNTVLMLLE 71 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--S-SSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--C-CCCCEEEEEC
Confidence 6899999999999999976667776 5777776543333 2 3345555543
No 282
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=63.71 E-value=10 Score=25.53 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=29.8
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEE
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l 43 (230)
.+.+.+.|++++|=.++|..|+..+|+-+..-.-
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNT 54 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNT 54 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEE
Confidence 4789999999999999999999999998865543
No 283
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=63.46 E-value=14 Score=24.78 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=33.8
Q ss_pred eeccchHHHHHHhhccccCCCCCc-------------eEEEEcCeecCCCCcc--cccCCCCCCEEEEEEEecCC
Q 026957 169 VESSDTIDNVKAKIQDKEGIPPDQ-------------QRLIFAGKQLEDGRTL--ADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 169 v~~~~tv~~lK~~i~~~~~~~~~~-------------~~l~~~g~~l~d~~~L--~~~~i~~~~~i~~~~~~~~g 228 (230)
.+...||.+|-+.+.+++. ..+ ..++.||+ |-..+ .++-+++||+|.+.-=..||
T Consensus 25 ~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~---di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 25 GEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDT---DWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred CCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCc---cccccCCcccCCCCcCEEEEECCCCCC
Confidence 3356799999888887762 111 22223332 11223 35678999999988766665
No 284
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=62.50 E-value=25 Score=22.89 Aligned_cols=41 Identities=29% Similarity=0.272 Sum_probs=31.6
Q ss_pred eEEEeccCe----eEeeecCCCChHHHHHHHHHhHhCC--CCCCcEE
Q 026957 79 IFVKTLTGK----TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRL 119 (230)
Q Consensus 79 v~v~~~~g~----~~~i~v~~~~tV~~lK~~i~~~~~i--~~~~q~L 119 (230)
+.|...++. ...+.++.++|+.++-+.+.+++++ .+....|
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 344445555 6789999999999999999999998 3444566
No 285
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=62.47 E-value=38 Score=21.60 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=47.4
Q ss_pred EEeeccchHHHHHHhhccccCCCCCceEEE-EcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026957 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 167 ~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 226 (230)
+.|++....--+-+..+++..+|+....++ -+|.=....++-..+-++.|+.+.++-|-+
T Consensus 20 lsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 20 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 567777767666667788888988877766 566677888899999999999999987754
No 286
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=62.37 E-value=14 Score=25.78 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=31.3
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCCccc
Q 026957 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLA 57 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~l~ 57 (230)
+-|+.+.||+++...|.++.++.++.-.++| ++.....+.+++
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~ 88 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMS 88 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHH
Confidence 4589999999999999999999987655555 443334444443
No 287
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=61.69 E-value=16 Score=23.73 Aligned_cols=47 Identities=21% Similarity=0.468 Sum_probs=32.1
Q ss_pred chHHHHHHhhccccCCCCCceEEEE--cCeecCCCCcccccCCCCCCEEEE
Q 026957 173 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 173 ~tv~~lK~~i~~~~~~~~~~~~l~~--~g~~l~d~~~L~~~~i~~~~~i~~ 221 (230)
.+..+|+.+.+++.+++....+|+. +|...+|+.-++. +.++..+.+
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~lm~ 69 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--LPDNTVLML 69 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--SSSSEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--CCCCCEEEE
Confidence 5899999999999999877777764 6777776532222 455555533
No 288
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=61.59 E-value=14 Score=32.04 Aligned_cols=77 Identities=13% Similarity=0.275 Sum_probs=63.3
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE--EcCeec---CCCCcccccCCCCCCEEEEEEEe
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l---~d~~~L~~~~i~~~~~i~~~~~~ 225 (230)
....+.++..+|..+.-+++.++-...++..+...-++....+.|- |..++. |-+++|.++.+.+...+.++-+.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 3467888889999999999999999999999998888888888775 666665 34589999999999999888775
Q ss_pred cC
Q 026957 226 RG 227 (230)
Q Consensus 226 ~~ 227 (230)
++
T Consensus 393 r~ 394 (506)
T KOG2507|consen 393 RA 394 (506)
T ss_pred Cc
Confidence 43
No 289
>CHL00030 rpl23 ribosomal protein L23
Probab=60.79 E-value=15 Score=24.78 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=30.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEE
Q 026957 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l 43 (230)
..+.+.+.|++++|=.++|+.|+..+|+.+..-.-
T Consensus 18 e~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt 52 (93)
T CHL00030 18 EKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNS 52 (93)
T ss_pred HCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEE
Confidence 35789999999999999999999999998765443
No 290
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=59.81 E-value=4.3 Score=26.15 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=21.1
Q ss_pred hhccccCCCCCceEEE---EcCeecCCCCcccccCCCC
Q 026957 181 KIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 181 ~i~~~~~~~~~~~~l~---~~g~~l~d~~~L~~~~i~~ 215 (230)
.||++..+.|....|. ..+.+|+-+++|.++||.+
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 4788888888888777 3557899999999999964
No 291
>PRK01777 hypothetical protein; Validated
Probab=59.71 E-value=47 Score=22.40 Aligned_cols=62 Identities=6% Similarity=0.065 Sum_probs=40.4
Q ss_pred CEEEEEcCC---CcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-------eEEEeccccccCCCcccccccccccceeee
Q 026957 1 MQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-------QRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~---g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-------q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|-.-. .....+++.++.||.++=. ..||+... -.+..+|+.... +.-+.+|+++.+.
T Consensus 4 i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~----~sgi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeIy 74 (95)
T PRK01777 4 IRVEVVYALPERQYLQRLTLQEGATVEEAIR----ASGLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEIY 74 (95)
T ss_pred eEEEEEEECCCceEEEEEEcCCCCcHHHHHH----HcCCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEEe
Confidence 345554432 2346789999999999877 55776652 245567776644 3456778888776
Q ss_pred e
Q 026957 71 L 71 (230)
Q Consensus 71 ~ 71 (230)
-
T Consensus 75 r 75 (95)
T PRK01777 75 R 75 (95)
T ss_pred c
Confidence 4
No 292
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=59.44 E-value=33 Score=29.52 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=45.8
Q ss_pred eeEEEeeccchHHHHHHhhcccc--CCCCCceEEEEc----Ce--ecCCCCcccccCCCCCCEEEEEE
Q 026957 164 TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFA----GK--QLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 164 ~~~~~v~~~~tv~~lK~~i~~~~--~~~~~~~~l~~~----g~--~l~d~~~L~~~~i~~~~~i~~~~ 223 (230)
...+++.++++...|-.++-... +..|+++.++-+ |. -+..++++.+.|+..|+.+++..
T Consensus 11 ~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 11 QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 45788999999998877776655 357788888732 22 14556899999999999999877
No 293
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=59.10 E-value=56 Score=22.49 Aligned_cols=72 Identities=28% Similarity=0.287 Sum_probs=47.6
Q ss_pred EEEEecc-CceeEEEeeccchHHHHHHhhccc----cC--CCCC-ceEEEEcCe--ecCCCCccccc-----CCCCCCEE
Q 026957 155 IFVKTLT-GKTITLEVESSDTIDNVKAKIQDK----EG--IPPD-QQRLIFAGK--QLEDGRTLADY-----NIQKESTL 219 (230)
Q Consensus 155 i~v~~~~-~~~~~~~v~~~~tv~~lK~~i~~~----~~--~~~~-~~~l~~~g~--~l~d~~~L~~~-----~i~~~~~i 219 (230)
+.+...+ ...+.+.+++++|+.++.+.+-.+ .+ .+++ .+.|...|+ -|..+.+|.+| .++.|..+
T Consensus 20 v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~ 99 (108)
T smart00144 20 IVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREP 99 (108)
T ss_pred EEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCc
Confidence 3444333 456889999999999987766554 11 2333 677776663 45566777777 35788888
Q ss_pred EEEEEec
Q 026957 220 HLVLRLR 226 (230)
Q Consensus 220 ~~~~~~~ 226 (230)
++++...
T Consensus 100 ~L~L~~~ 106 (108)
T smart00144 100 HLVLMTL 106 (108)
T ss_pred eEEEEec
Confidence 8887643
No 294
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=58.35 E-value=33 Score=29.75 Aligned_cols=77 Identities=14% Similarity=0.291 Sum_probs=62.3
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccCC---CcchhhhccccCCceEEEEE
Q 026957 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~~L~~~~i~~~~~i~l~~~ 148 (230)
.+..++.|+.++|..+.-.++.++-...+++-+.+.-++......|- |-.++..+ .++|.+..+.+...+-++-+
T Consensus 312 ~d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk 391 (506)
T KOG2507|consen 312 ADDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPK 391 (506)
T ss_pred cceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEec
Confidence 35678899999999999999999999999999998888888777775 66666643 67899999999888755544
Q ss_pred ee
Q 026957 149 LR 150 (230)
Q Consensus 149 ~~ 150 (230)
.+
T Consensus 392 ~r 393 (506)
T KOG2507|consen 392 KR 393 (506)
T ss_pred CC
Confidence 43
No 295
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=58.19 E-value=51 Score=21.74 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=29.0
Q ss_pred CCcHHHHHHHhhh-hhCCCCC----ceEEEeccc----cccCCCcccccccccccceeeee
Q 026957 20 SDTIDNVKAKIQD-KEGIPPD----QQRLIFAGK----QLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 20 ~~tv~~lK~~i~~-~~gi~~~----~q~l~~~g~----~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.+|+.++-++|-+ +.|+... ...+.|... .-...++|+++||.+|+.+.+.-
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D 68 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDD 68 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEE
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEE
Confidence 4799999998644 6776542 223444332 22346899999999999876653
No 296
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=58.16 E-value=45 Score=22.97 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.3
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (230)
|+|-..+|.+..+.|...-+-.++|+++-.++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 677788999999999999999999999999999997
No 297
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=57.76 E-value=13 Score=24.84 Aligned_cols=41 Identities=22% Similarity=0.368 Sum_probs=34.5
Q ss_pred CceeEEEeeccchHHHHHHhhccccCCCCCceEEE-EcCeec
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL 202 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g~~l 202 (230)
...+.+.|++.+|-.++|+.++..+|+++...+-. +.|+.-
T Consensus 20 ~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 20 PNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 36799999999999999999999999998877655 666543
No 298
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=57.58 E-value=12 Score=24.06 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=22.3
Q ss_pred HHHhHhCCCCCCcEEEE---cCcccCCCcchhhhcccc
Q 026957 105 KIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 105 ~i~~~~~i~~~~q~L~~---~g~~L~d~~~L~~~~i~~ 139 (230)
.|+++..+.|....|.- .+.+|+-.++|.++||.+
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 48889999999888873 457888899999999985
No 299
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=57.49 E-value=43 Score=21.89 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=29.8
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCC--CCcEEE
Q 026957 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI 120 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~ 120 (230)
++....+.++.++|+.++-..+.++++++. ....|+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 366788999999999999999999999864 455555
No 300
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=57.48 E-value=43 Score=22.70 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=32.7
Q ss_pred EEEEeccCceeEEEeeccchHHHHHHhhccccCCCC-CceEEE
Q 026957 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 196 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~-~~~~l~ 196 (230)
|.|-..++.-.++.++.+.||+++-..+..+..++. .+++|+
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 334445566678999999999999999999998755 567776
No 301
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=57.38 E-value=21 Score=24.22 Aligned_cols=30 Identities=37% Similarity=0.785 Sum_probs=22.5
Q ss_pred EEEEcCcccCCCcchhhhccccCCceEEEEE
Q 026957 118 RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 118 ~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (230)
.|.|.|++|..+.+|++| +..+..-.++++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivK 32 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVK 32 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEE
Confidence 577999999999999999 555554444443
No 302
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=57.22 E-value=50 Score=21.34 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=26.2
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
+...++.|++++|..++-+.+.+++++.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 5678999999999999999999999998
No 303
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=56.96 E-value=16 Score=23.74 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=18.5
Q ss_pred EEEEecCCCcHHHHHHHhhhhhC
Q 026957 13 ITLEVESSDTIDNVKAKIQDKEG 35 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~g 35 (230)
.+++++.++|+.++|+.+.+...
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHH
Confidence 47899999999999998877644
No 304
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=56.59 E-value=42 Score=28.94 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=51.3
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC--CCCCCcEEEEcC--c-c---cCCCcchhhhccccCCceEEEE
Q 026957 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAG--K-Q---LEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g--~-~---L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
.+.++...| ...+++.++++.+-|-.++-..+. ..|+++.+.-+. + . +..++++.+.|+..|..+++..
T Consensus 2 i~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 2 IFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred eEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 355666666 478999999999999888877654 567777776432 2 1 3456799999999999999876
No 305
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=56.30 E-value=51 Score=21.13 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=22.2
Q ss_pred EeeecCC-CChHHHHHHHHHhHhCC-CCCCcEEE-EcCc
Q 026957 89 ITLEVES-SDTIDNVKAKIQDKEGI-PPDQQRLI-FAGK 124 (230)
Q Consensus 89 ~~i~v~~-~~tV~~lK~~i~~~~~i-~~~~q~L~-~~g~ 124 (230)
-.+.++. ..+|++||..|..+.++ .....-|. ++.+
T Consensus 12 ~~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na~ 50 (74)
T PF08783_consen 12 DTITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNAQ 50 (74)
T ss_dssp EEEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEESS
T ss_pred cEEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECCC
Confidence 4556654 44999999999887766 33344443 4443
No 306
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=56.29 E-value=25 Score=22.56 Aligned_cols=47 Identities=17% Similarity=0.358 Sum_probs=33.4
Q ss_pred chHHHHHHhhccccCCCCCceEEE--EcCeecCCCCcccccCCCCCCEEEE
Q 026957 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 173 ~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l~d~~~L~~~~i~~~~~i~~ 221 (230)
.+.++|+.+.+++.+++....+++ -+|.+.+|..-++. +.+++.+.+
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp~nt~l~~ 67 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LPDNTELMA 67 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CCCCcEEEE
Confidence 479999999999999986666665 47888877533332 456655543
No 307
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=55.99 E-value=51 Score=20.98 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=43.2
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-cCcccCCCcchhhhccccCCceEE
Q 026957 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~~L~~~~i~~~~~i~l 145 (230)
..+.|++++....+-+-.++++.+|+...-++. .|.-....++..+.-++.|+.+.+
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 456788888888888888999999998887775 566778889999988999988765
No 308
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=55.69 E-value=43 Score=22.03 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=37.5
Q ss_pred EEecCCCcHHHHHHHhhhhhCCC-------CCceEEEeccc-cc------cCCCcccccccccccceeee
Q 026957 15 LEVESSDTIDNVKAKIQDKEGIP-------PDQQRLIFAGK-QL------EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~-------~~~q~l~~~g~-~l------~d~~~l~~~~i~~~~~i~l~ 70 (230)
|++++++|+.++-+.+.....+. -+...|++.+- .| .=+++|.+. +.+|..+.+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 67999999999999999884333 34445665542 12 125788888 7788777664
No 309
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=55.54 E-value=53 Score=21.11 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=33.7
Q ss_pred cchHHHHHHhhccccC-----CCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 172 SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 172 ~~tv~~lK~~i~~~~~-----~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
..||.+|++.+.+++. ......+...|+..-.+ +.-+++||.|-+.--..||
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 4799999999988762 11223344456643322 3358999999887666665
No 310
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=55.51 E-value=66 Score=22.15 Aligned_cols=73 Identities=27% Similarity=0.299 Sum_probs=46.4
Q ss_pred eeeEEEecc-CeeEeeecCCCChHHHHHHHHHhHh----C--CCCC-CcEEEEcCc--ccCCCcchhhhc-----cccCC
Q 026957 77 MQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGK--QLEDGRTLADYN-----IQKES 141 (230)
Q Consensus 77 ~~v~v~~~~-g~~~~i~v~~~~tV~~lK~~i~~~~----~--i~~~-~q~L~~~g~--~L~d~~~L~~~~-----i~~~~ 141 (230)
+.|.+...+ ...+.+.+++++|+.++.+.+-.+. + -+++ +..|...|+ -|..+.+|.+|. +..|.
T Consensus 18 i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~ 97 (108)
T smart00144 18 ILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGR 97 (108)
T ss_pred EEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCC
Confidence 344444433 4568999999999999988776651 1 2233 566666664 355566666664 56677
Q ss_pred ceEEEEEe
Q 026957 142 TLHLVLRL 149 (230)
Q Consensus 142 ~i~l~~~~ 149 (230)
.+++.+..
T Consensus 98 ~~~L~L~~ 105 (108)
T smart00144 98 EPHLVLMT 105 (108)
T ss_pred CceEEEEe
Confidence 77777643
No 311
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=55.32 E-value=27 Score=22.67 Aligned_cols=47 Identities=17% Similarity=0.370 Sum_probs=32.7
Q ss_pred chHHHHHHhhccccCCCCCceEEE--EcCeecCCCCcccccCCCCCCEEEE
Q 026957 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 173 ~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l~d~~~L~~~~i~~~~~i~~ 221 (230)
.+.++|+.+.+++.+++....+++ -+|.+.+|..-++. +.++..+.+
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t--Lp~nT~l~~ 69 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT--LPDNTVLML 69 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc--CCCCcEEEE
Confidence 479999999999999976666665 57888876533332 455555543
No 312
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=55.15 E-value=33 Score=22.26 Aligned_cols=49 Identities=16% Similarity=0.429 Sum_probs=32.7
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEe--ccccccCCCcccccccccccceeeeee
Q 026957 21 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~--~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.|..+|+.|..+.+++|...-++.+ +|-+++|+.-+.. + +..+..+++.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t--L-p~nT~l~~l~ 71 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT--L-PDNTVLMLLE 71 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc--C-CCCcEEEEEC
Confidence 5899999999999999765555554 6888877543333 2 2334444443
No 313
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.80 E-value=62 Score=21.67 Aligned_cols=84 Identities=24% Similarity=0.341 Sum_probs=47.8
Q ss_pred EEEEEeecceeEEEEeccCceeEEEee-ccchHHHHHHhhccccCCCCCceEEEEcCe------ec---CCCCcc--ccc
Q 026957 144 HLVLRLRGGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK------QL---EDGRTL--ADY 211 (230)
Q Consensus 144 ~l~~~~~~~~~i~v~~~~~~~~~~~v~-~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~------~l---~d~~~L--~~~ 211 (230)
.+.++..+|..+............++. ...||.+|-..+..++--.+++ .+..+|. +| .|...| .+|
T Consensus 6 ~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllekedy 84 (101)
T KOG4146|consen 6 EVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEKEDY 84 (101)
T ss_pred eEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhccccc
Confidence 344555666655544332223334432 3468998877777755322332 3334442 12 122222 578
Q ss_pred CCCCCCEEEEEEEecCC
Q 026957 212 NIQKESTLHLVLRLRGG 228 (230)
Q Consensus 212 ~i~~~~~i~~~~~~~~g 228 (230)
.+++||.|.++..+-||
T Consensus 85 ~ledgD~ivfiSTlHGg 101 (101)
T KOG4146|consen 85 PLEDGDHIVFISTLHGG 101 (101)
T ss_pred CcccCCEEEEEEeccCC
Confidence 99999999999888776
No 314
>PRK08453 fliD flagellar capping protein; Validated
Probab=54.24 E-value=53 Score=30.57 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=50.8
Q ss_pred cCCCcEEEEEecCCCcHHHHHHHhhhhh-----------CCCCCceEEEeccccccCC------Ccccccccccccceee
Q 026957 7 TLTGKTITLEVESSDTIDNVKAKIQDKE-----------GIPPDQQRLIFAGKQLEDG------RTLADYNIQKESTLHL 69 (230)
Q Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~-----------gi~~~~q~l~~~g~~l~d~------~~l~~~~i~~~~~i~l 69 (230)
..+|+.++|+|..+.|+.+|..+|-... |- ..-.+|.+.+...-.+ .+|++..+..+.--.+
T Consensus 134 ~~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~-~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~ 212 (673)
T PRK08453 134 YTQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGG-NDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLV 212 (673)
T ss_pred EECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCC-CccEEEEEeccCcCCCceEEEeccccccccCCcccccc
Confidence 3469999999999999999999998533 21 1123555554443222 3344444444331111
Q ss_pred eeeecCceeeEEEeccCeeEeeec
Q 026957 70 VLRLRGGMQIFVKTLTGKTITLEV 93 (230)
Q Consensus 70 ~~~~~~~~~v~v~~~~g~~~~i~v 93 (230)
-..-.+.+.|.++..+|+.+.+.+
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 213 DGSGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccccceeeeeccCCccccccc
Confidence 112234578888888887765544
No 315
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=53.75 E-value=26 Score=22.71 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=33.6
Q ss_pred chHHHHHHhhccccCCCCCceEEE--EcCeecCCCCcccccCCCCCCEEEEE
Q 026957 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 173 ~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l~d~~~L~~~~i~~~~~i~~~ 222 (230)
.+.++|+.+.++...++....+|+ -+|...++..-++. +.+++.+.+.
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~L 70 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMVL 70 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEEE
Confidence 479999999999999976555554 67888876533332 5666666443
No 316
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=51.87 E-value=65 Score=21.02 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=40.7
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCc-----ccCCCcchhhhccc
Q 026957 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----QLEDGRTLADYNIQ 138 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~-----~L~d~~~L~~~~i~ 138 (230)
.+|....+.++..-|-+.|+++|...+.+|+...-+.|-.. .|.++.-|.++--.
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~~~~ 66 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDFYRL 66 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHHHHh
Confidence 45666777788888999999999999999988777777432 35555666665433
No 317
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=51.10 E-value=31 Score=23.12 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=33.3
Q ss_pred CceeEEEeeccchHHHHHHhhccccCCCCCceEEE-EcCe
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 200 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g~ 200 (230)
.+.+.+.|+..+|=.++|+.++..+++++...+-. ..|+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk 59 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGK 59 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCc
Confidence 46899999999999999999999999998877544 5553
No 318
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=51.06 E-value=6.5 Score=33.26 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=43.1
Q ss_pred eccCeeEeeecC-CCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcch
Q 026957 83 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (230)
Q Consensus 83 ~~~g~~~~i~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L 132 (230)
..+|+...+.+. .+..+..+|.++....++++..|.+.+.|..+.|+.++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 457788887777 67789999999999999999999999999999887443
No 319
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=50.07 E-value=41 Score=22.24 Aligned_cols=34 Identities=3% Similarity=0.255 Sum_probs=27.3
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026957 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
..-|+.+.|++++...|.++.++.+++-.++|-+
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvn 52 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYIN 52 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEEC
Confidence 4458999999999999999999998764444433
No 320
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=49.89 E-value=80 Score=21.46 Aligned_cols=72 Identities=24% Similarity=0.412 Sum_probs=44.0
Q ss_pred ceeeEEEec-cCeeEeeecCCCChHHHHHHHHHhHh--CCCC----CCcEEEEcCc--ccCCCcchhhhc-----cccCC
Q 026957 76 GMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKE--GIPP----DQQRLIFAGK--QLEDGRTLADYN-----IQKES 141 (230)
Q Consensus 76 ~~~v~v~~~-~g~~~~i~v~~~~tV~~lK~~i~~~~--~i~~----~~q~L~~~g~--~L~d~~~L~~~~-----i~~~~ 141 (230)
.+.|.|... .+..+.+.++.++|+.++-.++-.+. +..+ ++..|...|. -|..+.+|.+|. +..+.
T Consensus 16 ~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~ 95 (106)
T PF00794_consen 16 KIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGK 95 (106)
T ss_dssp EEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT-
T ss_pred eEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCC
Confidence 355566555 56778999999999999988876662 2222 1566766664 356777788775 45555
Q ss_pred ceEEEE
Q 026957 142 TLHLVL 147 (230)
Q Consensus 142 ~i~l~~ 147 (230)
.+++.+
T Consensus 96 ~~~L~L 101 (106)
T PF00794_consen 96 DPHLVL 101 (106)
T ss_dssp -EEEEE
T ss_pred CcEEEE
Confidence 666554
No 321
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=49.24 E-value=40 Score=21.64 Aligned_cols=37 Identities=19% Similarity=0.445 Sum_probs=28.5
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEe--ccccccCCCccc
Q 026957 21 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 57 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~--~g~~l~d~~~l~ 57 (230)
.|..+|+.|..+.+++|.+.-++.+ +|-.++|+.-+.
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~ 57 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQ 57 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHh
Confidence 5899999999999999965556654 688887754443
No 322
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=49.00 E-value=21 Score=23.15 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.6
Q ss_pred EEEEecCCCcHHHHHHHhhhhhC
Q 026957 13 ITLEVESSDTIDNVKAKIQDKEG 35 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~g 35 (230)
..++++.++|+.++|+.+.+...
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~ 24 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQAR 24 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHH
Confidence 46889999999999999887754
No 323
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=48.48 E-value=58 Score=21.53 Aligned_cols=58 Identities=5% Similarity=0.119 Sum_probs=37.3
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcE-EEEcCc-ccCCCcchhhhcc--ccCCceEEE
Q 026957 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK-QLEDGRTLADYNI--QKESTLHLV 146 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~-L~~~g~-~L~d~~~L~~~~i--~~~~~i~l~ 146 (230)
-.+.++.+.|++++..-|.++.++++++-. |+.++. ....+.++++.-- .+++.+++.
T Consensus 18 ~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~~dGfLyi~ 79 (87)
T cd01612 18 KVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFGTNGELIVS 79 (87)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcCCCCEEEEE
Confidence 355689999999999999999998877644 444553 2234455544321 344555444
No 324
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=48.40 E-value=29 Score=25.87 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=32.7
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE-eccc
Q 026957 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 48 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~ 48 (230)
..+.+.+.|++++|=.+||..|+..+|+.+..-.-+ ..|+
T Consensus 21 e~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K 61 (158)
T PRK12280 21 SKNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKK 61 (158)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCc
Confidence 347899999999999999999999999998655444 3443
No 325
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=47.33 E-value=92 Score=21.45 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=27.8
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC
Q 026957 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~ 114 (230)
++|-..+|++..++|....+-.+++.++-+++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 455578999999999999999999999999999877
No 326
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=45.91 E-value=26 Score=22.63 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=30.7
Q ss_pred CceeEEEeeccchHHHHHHhhccccCCCCCceEEE
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~ 196 (230)
.+.+.+.|+...|=.++|+.++..+++.+...+-.
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 36899999999999999999999999988777554
No 327
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=45.68 E-value=94 Score=21.09 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=36.0
Q ss_pred EEEEcC-CCcEEEEEecCCCcHHHHHHHhhhh--hCCCCC----ceEEEecccc--ccCCCcccccc
Q 026957 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD----QQRLIFAGKQ--LEDGRTLADYN 60 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~--~gi~~~----~q~l~~~g~~--l~d~~~l~~~~ 60 (230)
|.|... .+..+++.++.++|+.+|-..+-.. .+..+. +-.|-..|+. |..+..|.+|.
T Consensus 19 v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 19 VSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp EEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccH
Confidence 445454 4678999999999999998887766 222221 3345566743 55667777765
No 328
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=44.58 E-value=61 Score=21.16 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=31.8
Q ss_pred CCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe
Q 026957 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~ 45 (230)
.+|.+..+.++..-|-..|+++++..+++|+..-.+.|
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 36777777777778999999999999999997777776
No 329
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.43 E-value=20 Score=24.71 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=31.5
Q ss_pred CCcHHHH----HHHhhhhhCCCCCce------------------EEEec-----ccccc-CCCcccccccccccceeee
Q 026957 20 SDTIDNV----KAKIQDKEGIPPDQQ------------------RLIFA-----GKQLE-DGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 20 ~~tv~~l----K~~i~~~~gi~~~~q------------------~l~~~-----g~~l~-d~~~l~~~~i~~~~~i~l~ 70 (230)
+.||.++ ++.|+....+||-+- .|..+ ...|+ +.++|..|||.++..|.++
T Consensus 33 d~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldhDd~w~L~d~~ktL~~~GIenETEis~F 111 (127)
T KOG4147|consen 33 DQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDHDDRWLLKDEDKTLKAAGIENETEISFF 111 (127)
T ss_pred HhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccCCcceeecCccchHHHhccCcchhhhhh
Confidence 4577664 566777777777332 22211 13345 4588999999988877654
No 330
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=43.86 E-value=20 Score=24.33 Aligned_cols=76 Identities=18% Similarity=0.345 Sum_probs=38.8
Q ss_pred EEeecceeEEEEeccCceeEEEee---ccchHHHHHHhhccccCCC------------CCceEEEEcC--eecCCCCccc
Q 026957 147 LRLRGGMQIFVKTLTGKTITLEVE---SSDTIDNVKAKIQDKEGIP------------PDQQRLIFAG--KQLEDGRTLA 209 (230)
Q Consensus 147 ~~~~~~~~i~v~~~~~~~~~~~v~---~~~tv~~lK~~i~~~~~~~------------~~~~~l~~~g--~~l~d~~~L~ 209 (230)
+...+|..+... +.+...++++ ...|+.+|-..+++..-.+ |.-..| .|+ ++|.. =.
T Consensus 4 vEF~GGlE~Lf~--~~k~h~v~l~~~~~~~ti~~Li~~l~~nll~~r~elF~~~~~vrPGILvL-INd~DwEl~g---~~ 77 (96)
T PF09138_consen 4 VEFSGGLELLFG--NQKKHKVSLPSDGEPATIKDLIDYLRDNLLKERPELFLEGGSVRPGILVL-INDADWELLG---EE 77 (96)
T ss_dssp EEEETTCGGGTT--T-SEEEEEE-SSCSC-BHHHHHHHHCCCT-SSGHHHHBSSSSB-TTEEEE-ETTCEHHHHT---CC
T ss_pred EEEcCcHHHHhC--CceeEEEEcCCCCCCcCHHHHHHHHHHhccCCCHhHEecCCeEcCcEEEE-EcCccceeec---Cc
Confidence 344455433322 3456677776 5679999988888865222 111111 111 12211 14
Q ss_pred ccCCCCCCEEEEEEEecCC
Q 026957 210 DYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 210 ~~~i~~~~~i~~~~~~~~g 228 (230)
+|-+++||+|.++.-+-||
T Consensus 78 ~y~l~~~D~I~FiSTLHGG 96 (96)
T PF09138_consen 78 DYVLKDGDNITFISTLHGG 96 (96)
T ss_dssp CSB--TTEEEEEEETTT--
T ss_pred ceEcCCCCEEEEEccCCCC
Confidence 6899999999999887776
No 331
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=43.48 E-value=25 Score=22.19 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=27.7
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcc
Q 026957 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l 56 (230)
+|+.+|.....+++|++ ..-.+.-+|.+++|-..+
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~I 60 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDVI 60 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEEE
Confidence 79999999999999998 455566778888774443
No 332
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=42.83 E-value=1.9e+02 Score=23.74 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=35.7
Q ss_pred chHHHHHHhhcccc----CCCCCceEEEEcCeecC---CCCcccccCCCCCCEEEE
Q 026957 173 DTIDNVKAKIQDKE----GIPPDQQRLIFAGKQLE---DGRTLADYNIQKESTLHL 221 (230)
Q Consensus 173 ~tv~~lK~~i~~~~----~~~~~~~~l~~~g~~l~---d~~~L~~~~i~~~~~i~~ 221 (230)
.+..++-+.|+.+. ..|+...-+.|+|+.|. ++.-+.=-.++.|+.++=
T Consensus 213 vSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e 268 (313)
T KOG1407|consen 213 VSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE 268 (313)
T ss_pred eeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE
Confidence 47888888888865 46778888889998873 344555556788888753
No 333
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=42.59 E-value=41 Score=24.62 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=28.8
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
.+.+.+.|++.++=.++|+.|+..+++.+..-
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kV 113 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKV 113 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEE
Confidence 47899999999999999999999999987544
No 334
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=41.88 E-value=1e+02 Score=23.01 Aligned_cols=93 Identities=11% Similarity=0.169 Sum_probs=37.3
Q ss_pred CcccccccccccceeeeeeecCceeeEEEeccCeeEee--ecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcc
Q 026957 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131 (230)
Q Consensus 54 ~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i--~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~ 131 (230)
...+.|.+.....+.-++..+...-+.|...+|+...+ -+..-..-.++...+++....--..... -....-.+..+
T Consensus 64 eLFA~~P~~~~~~VE~v~DSSRYFvlRv~d~~Gr~AfiGiGF~eRsdAFDF~vaLqd~~k~~~~~~~~-~~~~~~~~~~p 142 (160)
T PF07933_consen 64 ELFAQCPYDDYAAVEPVIDSSRYFVLRVQDPSGRHAFIGIGFRERSDAFDFNVALQDHRKYLKREKEA-EEQSQAAESQP 142 (160)
T ss_dssp SS-EEEEE-SS--EEE-TT--S-EEEEEEETTTEEEEEEEE-S-HHHHHHHHHHHHHHHS-SS-----------------
T ss_pred ceEEECcccCCCceEEeecccceEEEEEEcCCCcEEEEEEeeccccccccHHHHHHHHHHHhhchhhh-hhhhcccCCCC
Confidence 55777888877777777777777888898888877555 4555557888999998887641111111 11111234557
Q ss_pred hhhhccccCCceEEEE
Q 026957 132 LADYNIQKESTLHLVL 147 (230)
Q Consensus 132 L~~~~i~~~~~i~l~~ 147 (230)
-.||.+++|.+|++.+
T Consensus 143 ~~D~sLKeGetI~ini 158 (160)
T PF07933_consen 143 KKDYSLKEGETIKINI 158 (160)
T ss_dssp ----------------
T ss_pred ccCCcCCCCCEEEEec
Confidence 7899999999998764
No 335
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=40.53 E-value=45 Score=21.96 Aligned_cols=35 Identities=11% Similarity=0.231 Sum_probs=31.1
Q ss_pred CceeEEEeeccchHHHHHHhhccccCCCCCceEEE
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~ 196 (230)
.+.+.+.|+...+=.++|+.++..+++.+...+-.
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 46899999999999999999999999988877554
No 336
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=39.84 E-value=57 Score=21.28 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=31.7
Q ss_pred CcHHHHHHHhhhhhCCCCCc--eEEE--eccccccCCCcccccccccccceeeeee
Q 026957 21 DTIDNVKAKIQDKEGIPPDQ--QRLI--FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~--q~l~--~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.|..+|+.|..+.++++.+. -+|. -+|-.++|+.-+.. + +..+..+++.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~t--L-p~nT~l~~L~ 73 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLC--L-PPNTKFVLLA 73 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhh--C-CCCcEEEEEC
Confidence 58999999999999999433 3443 46888877544433 2 3334444443
No 337
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=39.62 E-value=56 Score=21.43 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=33.5
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCC-CCceEEEe--cc--ccccCCC
Q 026957 12 TITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF--AG--KQLEDGR 54 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~q~l~~--~g--~~l~d~~ 54 (230)
..++-|.|+.|..+|-..+..++.|. |+.-.|++ +| +.|.|+.
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~ 62 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDT 62 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCccc
Confidence 45789999999999999999999987 56666663 44 5566653
No 338
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=39.41 E-value=48 Score=22.37 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=32.6
Q ss_pred cCceeEEEeeccchHHHHHHhhccccCCCCCceEEE-EcC
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 199 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g 199 (230)
..+.+.+.|++.+|=.++|+.+++.+|+.+...+.+ ..|
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~ 59 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKG 59 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCC
Confidence 457899999999999999999999999988777543 444
No 339
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=39.28 E-value=1e+02 Score=21.53 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=26.9
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (230)
+.|++...+|...++++.++.|+.+.-. ..|++.
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~----~~gi~i 34 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAH----ENDIEL 34 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHH----HcCCCC
Confidence 4677777889999999999999998755 456553
No 340
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=38.00 E-value=28 Score=29.29 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=50.9
Q ss_pred eEEEEeccCceeEEEeeccchHHHHHHhhcccc-CCCCCceEEEEcC---eec--CCCCcccccCCCCCCE
Q 026957 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAG---KQL--EDGRTLADYNIQKEST 218 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~-~~~~~~~~l~~~g---~~l--~d~~~L~~~~i~~~~~ 218 (230)
.|.|+..+|+.....+-..++|..|-..++... |-+-+.+.|+..- +.| ..+.|+.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 488999999988888888899999988877776 4566678887544 444 4567999999998875
No 341
>CHL00030 rpl23 ribosomal protein L23
Probab=37.77 E-value=47 Score=22.32 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=31.8
Q ss_pred CceeEEEeeccchHHHHHHhhccccCCCCCceEEE-EcC
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 199 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g 199 (230)
.+.+.+.|+..+|=.++|+.++..+++.+...+-. ..|
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~ 57 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPR 57 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCC
Confidence 47899999999999999999999999887776544 444
No 342
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=37.15 E-value=57 Score=27.57 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=50.3
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHh-CCCCCCcEEEEcC---cccC--CCcchhhhccccCCc
Q 026957 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAG---KQLE--DGRTLADYNIQKEST 142 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~~~g---~~L~--d~~~L~~~~i~~~~~ 142 (230)
.|.|+.++|+.....+..+++|.-|-.-..... |.+-+..+|..+- +.|. .+.|+.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 488999999988888888899988877666554 4666678888655 4453 477999999998764
No 343
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=36.98 E-value=67 Score=20.99 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=31.6
Q ss_pred chHHHHHHhhccccCCCCCceEEE--EcCeecCCCCcccccCCCCCCEEEEE
Q 026957 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 173 ~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l~d~~~L~~~~i~~~~~i~~~ 222 (230)
.+.++|+.+.++...++.. .+|+ -+|...++..-++. +.+++.+.+.
T Consensus 21 ~sL~EL~~K~~~~L~~~~~-~~lvLeeDGT~Vd~EeyF~t--LpdnT~lm~L 69 (81)
T cd06537 21 ASLQELLAKALETLLLSGV-LTLVLEEDGTAVDSEDFFEL--LEDDTCLMVL 69 (81)
T ss_pred cCHHHHHHHHHHHhCCCCc-eEEEEecCCCEEccHHHHhh--CCCCCEEEEE
Confidence 4799999999999988633 4444 57778876533332 5666666443
No 344
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=36.97 E-value=1.2e+02 Score=19.90 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=29.1
Q ss_pred CCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026957 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (230)
.+|..+...+++..|-.+|.+++.+....+..
T Consensus 7 y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~ 38 (83)
T cd06404 7 YNGDIMITSIDPSISLEELCNEVRDMCRFHND 38 (83)
T ss_pred ecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCC
Confidence 47999999999999999999999999998763
No 345
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=35.33 E-value=76 Score=19.12 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=33.3
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcc
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l 56 (230)
|+|.+.+|+... +..+.|+.|+=..|....+-.. -.-..+|+..+-+..|
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~--~~A~Vng~~vdl~~~L 50 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRA--VAAKVNGQLVDLDHPL 50 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCE--EEEEETTEEEETTSBB
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhe--eEEEEcCEECCCCCCc
Confidence 456668888776 8889999999999988765332 1223677655444433
No 346
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.21 E-value=17 Score=31.71 Aligned_cols=56 Identities=25% Similarity=0.304 Sum_probs=47.6
Q ss_pred EecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 16 ~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
+-+-+.|-.++...|.+.+||+.+.-+.+.+|+.|+-.+||++.|++.+....+.+
T Consensus 55 k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~ 110 (568)
T KOG2561|consen 55 KCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAV 110 (568)
T ss_pred hcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHh
Confidence 33455678899999999999999988999999999999999999998777655544
No 347
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=33.86 E-value=86 Score=20.40 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=30.7
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEE--eccccccCCCcccccccccccceeeeee
Q 026957 21 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
.|..+|+.|..+.++++. .-+|. -+|-.++|+.-+.. + +..+..+++.
T Consensus 21 ~sL~eL~~K~~~~l~l~~-~~~lvL~eDGT~Vd~EeyF~t--L-p~nt~l~vL~ 70 (79)
T cd06538 21 DSLEDLLNKVLDALLLDC-ISSLVLDEDGTGVDTEEFFQA--L-ADNTVFMVLG 70 (79)
T ss_pred CCHHHHHHHHHHHcCCCC-ccEEEEecCCcEEccHHHHhh--C-CCCcEEEEEC
Confidence 589999999999999963 33444 36777766543333 2 3345555443
No 348
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=33.64 E-value=2e+02 Score=21.30 Aligned_cols=110 Identities=21% Similarity=0.372 Sum_probs=65.3
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeee----eeec-CceeeEEEeccCe
Q 026957 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV----LRLR-GGMQIFVKTLTGK 87 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~----~~~~-~~~~v~v~~~~g~ 87 (230)
|+-.+-.-+|...|-.++.+..||- |++.+|..|...- .||...|.-+.-. +... ..+.+.|+ -|
T Consensus 6 fP~R~L~peTtEklLN~l~~i~GI~----R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~--vG- 75 (153)
T PF02505_consen 6 FPHRLLKPETTEKLLNELYSIEGIR----RVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVGGEEVELTVK--VG- 75 (153)
T ss_pred echhcCCHHHHHHHHHHHhccCCEE----EEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEECCEEEEEEEE--Ee-
Confidence 4445556689999999999988875 8899998887532 3443333221111 1111 11233332 23
Q ss_pred eEeeecCC-CChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhc
Q 026957 88 TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 88 ~~~i~v~~-~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~ 136 (230)
.+.+++.. .+.+..+++...+.+ | -...+ ..|+-+....|+.||-
T Consensus 76 ri~lele~~~~~ie~I~~iCee~l--p-f~y~i-~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 76 RIILELEDEEDVIEKIREICEEVL--P-FGYDI-KEGKFIRTKPTVTDYA 121 (153)
T ss_pred EEEEEecCcHHHHHHHHHHHHHhC--C-CceEe-eeeEEeccCCchhhhh
Confidence 35667776 666777765555544 2 22333 3588889999999984
No 349
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=33.46 E-value=1.9e+02 Score=23.20 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=27.5
Q ss_pred CCChHHHHHHHHHhHhCCCCCCcEEEEcCccc
Q 026957 95 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (230)
Q Consensus 95 ~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L 126 (230)
-..|+..|...+.+-+...+..|.|.|.|-..
T Consensus 139 fdwp~~~L~~li~D~wq~~~~sqtl~~q~glv 170 (305)
T PF06622_consen 139 FDWPVQSLQYLINDNWQLVPHSQTLFFQGGLV 170 (305)
T ss_pred EeCcHHHHHHHHhhhhhccccccceeeecccc
Confidence 35789999999999888889999999988654
No 350
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=32.86 E-value=25 Score=29.75 Aligned_cols=49 Identities=35% Similarity=0.575 Sum_probs=41.5
Q ss_pred ccCceeEEEee-ccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcc
Q 026957 160 LTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (230)
Q Consensus 160 ~~~~~~~~~v~-~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L 208 (230)
.+|+...+.+. .+..+..+|.++....+++...|.+.+.|..+.|+.++
T Consensus 290 ~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 45677777776 77899999999999999999999999999999887544
No 351
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=32.27 E-value=19 Score=22.62 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=13.5
Q ss_pred cHHHHHHHhhhhhCCCCC
Q 026957 22 TIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~ 39 (230)
|+.++.+.|.+.+|++++
T Consensus 1 t~~~Ii~~Va~~~~v~~~ 18 (70)
T PF08299_consen 1 TIEDIIEAVAEYFGVSVE 18 (70)
T ss_dssp -HHHHHHHHHHHTT--HH
T ss_pred CHHHHHHHHHHHHCCCHH
Confidence 788999999999999974
No 352
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=32.17 E-value=33 Score=28.65 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=38.6
Q ss_pred eEEEeeccchHHHHHHhhccccC-C-CCCceEEEEcCeecCCCCccccc
Q 026957 165 ITLEVESSDTIDNVKAKIQDKEG-I-PPDQQRLIFAGKQLEDGRTLADY 211 (230)
Q Consensus 165 ~~~~v~~~~tv~~lK~~i~~~~~-~-~~~~~~l~~~g~~l~d~~~L~~~ 211 (230)
-.+.++...||.+||+.+..+.+ . +..+..+.+++..|.+..||.+.
T Consensus 166 ~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 166 RFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred ceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhh
Confidence 46778889999999999999998 3 44556778899899888998853
No 353
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=31.61 E-value=1.4e+02 Score=19.09 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=36.2
Q ss_pred EEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEE
Q 026957 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~ 197 (230)
+.+..++.+...+++.+..|+.+--.+.-+.-|+.|+.+..+.
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~ 44 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFR 44 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEE
Confidence 4566778888899999999999988888888899898887773
No 354
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=30.24 E-value=44 Score=24.10 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.4
Q ss_pred cccCCCcchhhhccccCCceEEEEEee
Q 026957 124 KQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 124 ~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (230)
+..+|+++|+..+++-|+.+.+.+.++
T Consensus 112 Kg~ddnktL~~~kf~iGD~lDVaI~~p 138 (151)
T KOG3391|consen 112 KGIDDNKTLQQTKFEIGDYLDVAITPP 138 (151)
T ss_pred ccCCccchhhhCCccccceEEEEecCc
Confidence 456889999999999999999988754
No 355
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=30.19 E-value=1.1e+02 Score=18.83 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=13.1
Q ss_pred ccccCCCCCceEEEEcCeecCC
Q 026957 183 QDKEGIPPDQQRLIFAGKQLED 204 (230)
Q Consensus 183 ~~~~~~~~~~~~l~~~g~~l~d 204 (230)
|...|.|+....|+.+|..+..
T Consensus 5 C~v~g~P~p~v~W~k~~~~l~~ 26 (76)
T cd05736 5 CHAEGIPLPRLTWLKNGMDITP 26 (76)
T ss_pred eEeeecCCCEEEEEECCEECCC
Confidence 3444666666677766666543
No 356
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=30.08 E-value=1.3e+02 Score=25.30 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=45.9
Q ss_pred eEEEeeccchHHHHHHhhcccc--------------C-CCCCceEEEEcCeecCCCCcccccC---CCCCCEEEEEEEec
Q 026957 165 ITLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVLRLR 226 (230)
Q Consensus 165 ~~~~v~~~~tv~~lK~~i~~~~--------------~-~~~~~~~l~~~g~~l~d~~~L~~~~---i~~~~~i~~~~~~~ 226 (230)
..+..+..-.|..++..|.++. . .|.+...|+.+|.+|+.+.||+... =+.+..|.+..|..
T Consensus 250 ~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 250 SRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred ceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 3455555568888888888877 2 3445678899999999999887654 36777888888865
Q ss_pred C
Q 026957 227 G 227 (230)
Q Consensus 227 ~ 227 (230)
+
T Consensus 330 ~ 330 (331)
T PF11816_consen 330 G 330 (331)
T ss_pred C
Confidence 4
No 357
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=29.92 E-value=1.1e+02 Score=19.92 Aligned_cols=54 Identities=9% Similarity=0.196 Sum_probs=33.6
Q ss_pred ccchHHHHHHhhccccC---CCCCceE-E-EEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 171 SSDTIDNVKAKIQDKEG---IPPDQQR-L-IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 171 ~~~tv~~lK~~i~~~~~---~~~~~~~-l-~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
.-+|+.+|.+.+.++.. ....... + ..+...+.+ .++-+++||+|.+.--..||
T Consensus 26 ~~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~t~L~dGDeVa~~PPVsGG 84 (84)
T COG1977 26 VGATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVG----LDTPLKDGDEVAFFPPVSGG 84 (84)
T ss_pred HHHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeecc----ccccCCCCCEEEEeCCCCCC
Confidence 35799999999866654 2121112 2 233344433 24568899999988877776
No 358
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=29.69 E-value=48 Score=21.66 Aligned_cols=43 Identities=28% Similarity=0.539 Sum_probs=32.9
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCC---CceEEE-ecccccc
Q 026957 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI-FAGKQLE 51 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~---~~q~l~-~~g~~l~ 51 (230)
+|+...+.++.++++--|-++...+.|.++ ..+++. ++|..+.
T Consensus 8 ng~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~~ 54 (91)
T cd05484 8 NGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKLS 54 (91)
T ss_pred CCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEee
Confidence 789999999999999999999999999664 333444 5555443
No 359
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=29.39 E-value=1.3e+02 Score=18.49 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=23.3
Q ss_pred cchhhhccccCCceEEEEEeecceeEEEEeccCceeE
Q 026957 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 166 (230)
Q Consensus 130 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~ 166 (230)
..|.+.|+.+|+.|.+.-+...+-.+.+.. +++.+.
T Consensus 26 ~~L~~lGl~~G~~i~v~~~~~~~~~~~i~~-~~~~i~ 61 (74)
T PF04023_consen 26 RRLADLGLTPGSEITVIRKNPFGGPVVIKV-DGSRIA 61 (74)
T ss_dssp HHHHHCT-STTEEEEEEEEETTSSEEEEEE-TTEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEEE
Confidence 468999999999999886654444455553 244443
No 360
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=29.29 E-value=2.9e+02 Score=21.89 Aligned_cols=162 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred ccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcc--------
Q 026957 56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQ-------- 125 (230)
Q Consensus 56 l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~-------- 125 (230)
|+.-+...+..+.+.+.......|+|-..=.+.-.+.+....|+.++-.+.--......+...+. .+|+.
T Consensus 58 l~~~~~~~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~AGG~~~~~~~~~~i~~~~~g~~~~~~idl~ 137 (239)
T TIGR03028 58 LSKGGFVKQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLALAGGVTPDGADVITLVREREGKIFRKQIDFP 137 (239)
T ss_pred HhhcCcccCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHHcCCCCccCCCeEEEEEecCCeEEEEEEEHH
Q ss_pred --cCCCcchhhhccccCCceEEEEEeecceeEEEEeccCceeEEEeeccchHHHHHHhhccccCC-CCCceEEEEcCeec
Q 026957 126 --LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFAGKQL 202 (230)
Q Consensus 126 --L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~-~~~~~~l~~~g~~l 202 (230)
+.....-.++-+++|++|++.... .+++.-.-.+.-.+.+.++.|+.++-.+.---... .+....++..+..-
T Consensus 138 ~l~~~g~~~~ni~L~~GD~I~V~~~~----~v~v~G~V~~pg~~~~~~~~tl~~al~~aGG~~~~a~~~~v~i~R~~~~g 213 (239)
T TIGR03028 138 ALFNPGGDNENILVAGGDIIYVDRAP----VFYIYGEVQRPGAYRLERNMTVMQALAQGGGLTPRGTERGIRVMRRDDKG 213 (239)
T ss_pred HHHhcCCCcCCcEEcCCCEEEEcCCc----cEEEEeEccCCeEEEeCCCCCHHHHHHhcCCCCcccCcceEEEEEECCCC
Q ss_pred CCCCcccccC--CCCCCEEEE
Q 026957 203 EDGRTLADYN--IQKESTLHL 221 (230)
Q Consensus 203 ~d~~~L~~~~--i~~~~~i~~ 221 (230)
.-...-.+.. +++||.|++
T Consensus 214 ~~~~~~~~~~~~l~~gDii~V 234 (239)
T TIGR03028 214 AVEEVSGELGDLVQPDDVIYV 234 (239)
T ss_pred cEEEEecCCCcccCCCCEEEE
No 361
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=28.68 E-value=56 Score=23.62 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=23.6
Q ss_pred cCeecCCCCcccccCCCCCCEEEEEEEe
Q 026957 198 AGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 198 ~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 225 (230)
+.+-.+|+++|+..+++-||-|.+....
T Consensus 110 g~Kg~ddnktL~~~kf~iGD~lDVaI~~ 137 (151)
T KOG3391|consen 110 GRKGIDDNKTLQQTKFEIGDYLDVAITP 137 (151)
T ss_pred CcccCCccchhhhCCccccceEEEEecC
Confidence 3455699999999999999999998764
No 362
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=28.51 E-value=1.6e+02 Score=18.61 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=30.1
Q ss_pred HhHhCCCCCCcEEEEcCcccCCCcchhhh--ccccCCceEEEEE
Q 026957 107 QDKEGIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 148 (230)
Q Consensus 107 ~~~~~i~~~~q~L~~~g~~L~d~~~L~~~--~i~~~~~i~l~~~ 148 (230)
+.+.|+.+.+..+..+|....+...+..+ ....|+++.+.+.
T Consensus 27 A~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~ 70 (82)
T PF13180_consen 27 AAKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVL 70 (82)
T ss_dssp HHHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEE
T ss_pred HHHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEE
Confidence 34578999999999999999776666544 3567777766653
No 363
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=27.96 E-value=1.3e+02 Score=23.01 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=8.2
Q ss_pred CceeeEEEeccCeeEeeec
Q 026957 75 GGMQIFVKTLTGKTITLEV 93 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v 93 (230)
+++.+.+...+|+.+.+++
T Consensus 106 eg~~v~v~~~~~~~i~v~l 124 (184)
T TIGR00038 106 ENMEVSVTFYNGEPIGVEL 124 (184)
T ss_pred CCCEEEEEEECCEEEEEEC
Confidence 3444444444444444333
No 364
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=27.25 E-value=95 Score=22.62 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=54.8
Q ss_pred CCcHHHHHHHhhhhhCCCCCceEEEecccc------cc-CCCcccccccccccceeeeeeecCceeeEEEeccCeeEeee
Q 026957 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ------LE-DGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 92 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~------l~-d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~ 92 (230)
-.+..|+|+.|.....+.-..-.+.|+--+ .+ |-..|+. +.....+.+.-.|.+.-++.|...+|..+.-+
T Consensus 12 vLsL~e~r~aIh~LLd~Rd~~~WMLFGTLPfy~Cs~~eeD~~Ll~R--L~~~~NVTvRNDPDGRsRLNvNiFtGdviVTD 89 (153)
T PF08756_consen 12 VLSLDEMREAIHRLLDIRDPNVWMLFGTLPFYPCSDDEEDLALLKR--LRSEPNVTVRNDPDGRSRLNVNIFTGDVIVTD 89 (153)
T ss_pred cCCHHHHHHHHHHHHhccCCCeeEEecccccccCCCCHHHHHHHHH--HHhCCCCeeecCCCccceeeeeEecCCEEEec
Confidence 358899999999999999888888886422 11 2222332 44455666666777777888888888777666
Q ss_pred cCCCChHHHHH
Q 026957 93 VESSDTIDNVK 103 (230)
Q Consensus 93 v~~~~tV~~lK 103 (230)
+...-+++.++
T Consensus 90 FgD~~~lgNI~ 100 (153)
T PF08756_consen 90 FGDEPPLGNIQ 100 (153)
T ss_pred CCCCCCccccc
Confidence 65554554443
No 365
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=26.34 E-value=64 Score=27.00 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=39.6
Q ss_pred EeeecCCCChHHHHHHHHHhHhC--CCCCCcEEEEcCcccCCCcchhhhc
Q 026957 89 ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~~ 136 (230)
-.+.++...||.+||.-+..+.+ -+..+.-+++++..|.+..||.+.-
T Consensus 166 ~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~ 215 (331)
T KOG2660|consen 166 RFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIA 215 (331)
T ss_pred ceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhh
Confidence 35678888999999999999998 3455667889999999999998654
No 366
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=26.29 E-value=36 Score=20.49 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=16.2
Q ss_pred cHHHHHHHhhhhhCCCCCc
Q 026957 22 TIDNVKAKIQDKEGIPPDQ 40 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~ 40 (230)
|+.+|.+.|.+.+||+++.
T Consensus 1 ~~~~I~~~Va~~~~i~~~~ 19 (60)
T smart00760 1 TIEEIIEAVAEYFGVKPED 19 (60)
T ss_pred CHHHHHHHHHHHhCCCHHH
Confidence 5788999999999999754
No 367
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=26.20 E-value=2.6e+02 Score=20.39 Aligned_cols=91 Identities=21% Similarity=0.301 Sum_probs=57.3
Q ss_pred eecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcc------------hhhhccccCCceEEEEEeecceeEEEE
Q 026957 91 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT------------LADYNIQKESTLHLVLRLRGGMQIFVK 158 (230)
Q Consensus 91 i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~------------L~~~~i~~~~~i~l~~~~~~~~~i~v~ 158 (230)
+..-|+.-|..|-.+.+-.-.+..+...+.++|+.|++... |..|.+.+|+.=...-...+|-++.+.
T Consensus 19 vt~lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~ 98 (149)
T PF10787_consen 19 VTSLPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVID 98 (149)
T ss_pred eecCcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEE
Confidence 34445667888877777666777788889999999876433 456677777764333344556677777
Q ss_pred eccCce-eEEEeec-cchHHHHHHh
Q 026957 159 TLTGKT-ITLEVES-SDTIDNVKAK 181 (230)
Q Consensus 159 ~~~~~~-~~~~v~~-~~tv~~lK~~ 181 (230)
...|+. ..+.+-+ ++-|.-+|+.
T Consensus 99 tKkGK~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 99 TKKGKKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred eccCcceeEEEEEecccHHHHHHHh
Confidence 766653 4444432 2345444443
No 368
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=25.95 E-value=67 Score=22.59 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=23.4
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHh
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
|+|.+.. +|..+..++..+.|..+|.+++
T Consensus 1 mkI~i~i-~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITI-GGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEE-TTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEE-CCEEEEEEECCCHHHHHHHHhC
Confidence 7788855 5899999999999998887743
No 369
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=24.82 E-value=1.6e+02 Score=18.84 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=25.9
Q ss_pred CEEEEEcCCCc---EEEEEecCCCcHHHHHHHhhhhh
Q 026957 1 MQIFVKTLTGK---TITLEVESSDTIDNVKAKIQDKE 34 (230)
Q Consensus 1 m~v~v~~~~g~---~~~~~v~~~~tv~~lK~~i~~~~ 34 (230)
|+||-|..++. .-++.+..++||.++-.+|....
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di 38 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDL 38 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHH
Confidence 46777776542 45688899999999999998654
No 370
>PRK00529 elongation factor P; Validated
Probab=24.74 E-value=1.8e+02 Score=22.19 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=8.4
Q ss_pred CceeeEEEeccCeeEeeec
Q 026957 75 GGMQIFVKTLTGKTITLEV 93 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v 93 (230)
+++.+.+...+++.+.+++
T Consensus 107 eg~~v~v~~~~~~~i~v~l 125 (186)
T PRK00529 107 EGMEVTVVFYNGEPISVEL 125 (186)
T ss_pred CCCEEEEEEECCEEEEEEC
Confidence 3444444444444444433
No 371
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=24.73 E-value=86 Score=19.97 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=19.1
Q ss_pred CcccccCCCCCCEEEEEEEecCCC
Q 026957 206 RTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 206 ~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
+.|.+.|+.+|+.|.+..+..-|+
T Consensus 24 ~rL~~mGl~pG~~V~v~~~aP~gd 47 (74)
T PRK09555 24 QKLLSLGMLPGSSFNVVRVAPLGD 47 (74)
T ss_pred HHHHHcCCCCCCEEEEEEECCCCC
Confidence 578888999999998888766543
No 372
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=24.16 E-value=1.2e+02 Score=27.30 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=38.2
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
+|.|...+|+++.|+..... .-.+.-|.+.++|+.+.... |..-.|..|.++.+.+-.
T Consensus 443 ~~~i~l~~g~~~~I~a~n~s-------------~~n~YIqsv~lNGk~~~~~~-i~~~~i~~GG~L~f~mg~ 500 (502)
T PF07971_consen 443 KVTIHLGNGKTFTIEAKNNS-------------AENIYIQSVTLNGKPLTRPW-ITHDDIMNGGTLEFEMGD 500 (502)
T ss_dssp EEEEE-CCC-EEEEE-TT-B-------------TTB-EEEEEEETTEEE-SSE-EEHHHHHC-EEEEEEEES
T ss_pred eEEEEcCCCCEEEEEecCCC-------------CCCceEeEEEECCEECcCCE-EeHHHHhCCCEEEEEeCC
Confidence 46777778999999887554 11256789999999997665 777778888888876643
No 373
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=23.72 E-value=1.1e+02 Score=22.77 Aligned_cols=38 Identities=8% Similarity=0.036 Sum_probs=32.5
Q ss_pred CceeEEEeeccchHHHHHHhhccccCCCCCceEEE-EcC
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 199 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g 199 (230)
.+.|.+.|++.+|=.++|..|+..+++.+...+-+ ..|
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~ 60 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDK 60 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCC
Confidence 46799999999999999999999999988877554 454
No 374
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=23.61 E-value=2.6e+02 Score=19.44 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=30.4
Q ss_pred CEEEEEcCCCc--EEEEEecCCCcHHHHHHHhhhhhCCC
Q 026957 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
|+-|++.-+++ +-.+.|+..+|..++-+.+-+++.+.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 67788777766 45699999999999999999888844
No 375
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=22.82 E-value=3.5e+02 Score=22.79 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=42.1
Q ss_pred eeecCCCChHHHHHHHHHhHh--------------C-CCCCCcEEEEcCcccCCCcchhhhc---cccCCceEEEEEe
Q 026957 90 TLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVLRL 149 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~--------------~-i~~~~q~L~~~g~~L~d~~~L~~~~---i~~~~~i~l~~~~ 149 (230)
.+..+.--.|..++.-|.+++ . .|.+...|.++|+.|..+.||+... .+.++.|.+..|.
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~ 328 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRR 328 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEe
Confidence 455555568888888888888 2 3455678999999999988876653 4556656555443
No 376
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=22.70 E-value=50 Score=20.71 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=10.9
Q ss_pred CCcccccCCCCCCEEEE
Q 026957 205 GRTLADYNIQKESTLHL 221 (230)
Q Consensus 205 ~~~L~~~~i~~~~~i~~ 221 (230)
.+.|...|+++||+|.+
T Consensus 46 ~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 46 EKALRKAGAKEGDTVRI 62 (69)
T ss_dssp HHHHHTTT--TT-EEEE
T ss_pred HHHHHHcCCCCCCEEEE
Confidence 35788889999999865
No 377
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.61 E-value=2.4e+02 Score=23.14 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=24.6
Q ss_pred EecCCCcHHHHHHHhhhhhCCCCCceEEE
Q 026957 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (230)
Q Consensus 16 ~v~~~~tv~~lK~~i~~~~gi~~~~q~l~ 44 (230)
.++...+|.+|-++|.+.+.|++....+.
T Consensus 68 ~Ie~fsnv~ELY~kIAe~F~Is~~dIlfc 96 (334)
T KOG3938|consen 68 RIEGFSNVRELYQKIAEAFDISPDDILFC 96 (334)
T ss_pred eecccccHHHHHHHHHHHhcCCccceEEE
Confidence 35667899999999999999999877665
No 378
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=22.52 E-value=1.9e+02 Score=17.99 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=16.3
Q ss_pred ccccCCCCCceEEEEcCeecC
Q 026957 183 QDKEGIPPDQQRLIFAGKQLE 203 (230)
Q Consensus 183 ~~~~~~~~~~~~l~~~g~~l~ 203 (230)
|+..|.|+-...|+.+|..++
T Consensus 5 C~a~G~P~P~i~W~k~g~~l~ 25 (77)
T cd05874 5 CEAKGKPPPSFSWTRNGTHFD 25 (77)
T ss_pred eeCcccCCCeEEEEECCeECC
Confidence 455678888889998888774
No 379
>PHA02090 hypothetical protein
Probab=21.44 E-value=16 Score=22.49 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=22.3
Q ss_pred EcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE
Q 026957 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (230)
Q Consensus 6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~ 44 (230)
|+-+|....+++-++-+...=-+.+.-..|||.+.|+++
T Consensus 33 ksk~g~lrv~e~m~dg~~ktna~flgy~igip~~eq~~f 71 (79)
T PHA02090 33 KSKEGDLRVIEVMEDGGWKTNAEFLGYAIGIPVNEQKFF 71 (79)
T ss_pred hccCCceEEEEeccCCCccccceeeeeeeCccchHHHHH
Confidence 344566666666666554433334445567777777654
No 380
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=21.40 E-value=90 Score=21.13 Aligned_cols=50 Identities=12% Similarity=0.331 Sum_probs=28.2
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccc
Q 026957 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~ 64 (230)
+++.++...|+..+.+...+....+....++++ ...+++.|+-.|-+.+|
T Consensus 45 lP~~~~~~ls~~~i~~~f~~l~~~~~~~~ri~L--Aiv~~DsTiVYY~i~~G 94 (101)
T PF09631_consen 45 LPVPLTEKLSLEQIDEVFDSLPNPSGDPKRILL--AIVDDDSTIVYYKIHDG 94 (101)
T ss_dssp EEEETT-EEEHHHHHHHHHHHHHHCT---EEEE--EEE-TTS-EEEEEEE--
T ss_pred EeeccCCCcCHHHHHHHHHHhcccCCCCcEEEE--EEEcCCCCEEEEEEeCC
Confidence 455667777888888876665555533445554 34567788888877665
No 381
>PRK08453 fliD flagellar capping protein; Validated
Probab=21.29 E-value=3e+02 Score=25.85 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=48.2
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhC--C--------CCCCcEEEEcCcccCCC------cchhhhccccCCceEEEE
Q 026957 84 LTGKTITLEVESSDTIDNVKAKIQDKEG--I--------PPDQQRLIFAGKQLEDG------RTLADYNIQKESTLHLVL 147 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~--i--------~~~~q~L~~~g~~L~d~------~~L~~~~i~~~~~i~l~~ 147 (230)
.+|+.+.++++...|+.+|..+|-...+ + .....+|+..+...-.+ .+|.+..+..|.--.+-.
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~~~ 214 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLVDG 214 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCCCccEEEEEeccCcCCCceEEEeccccccccCCcccccccc
Confidence 4699999999999999999999984322 1 11246666665544222 233333443333111111
Q ss_pred EeecceeEEEEeccCceeEEEe
Q 026957 148 RLRGGMQIFVKTLTGKTITLEV 169 (230)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~~~~v 169 (230)
.-.+...+.++..+|+...+.+
T Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 215 SGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccceeeeeccCCccccccc
Confidence 2223356666666665554433
No 382
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=21.15 E-value=62 Score=20.31 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=15.0
Q ss_pred CCcccccCCCCCCEEEEE
Q 026957 205 GRTLADYNIQKESTLHLV 222 (230)
Q Consensus 205 ~~~L~~~~i~~~~~i~~~ 222 (230)
...|...|+++||+|.+.
T Consensus 46 ~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHcCCCCCCEEEEc
Confidence 457899999999999764
No 383
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=21.03 E-value=1.8e+02 Score=19.28 Aligned_cols=19 Identities=26% Similarity=0.386 Sum_probs=10.9
Q ss_pred CCCCCceEEEEcCeecCCC
Q 026957 187 GIPPDQQRLIFAGKQLEDG 205 (230)
Q Consensus 187 ~~~~~~~~l~~~g~~l~d~ 205 (230)
|-|+-.+.|+.+|+.+.++
T Consensus 26 G~p~p~v~W~kdg~~l~~~ 44 (98)
T cd05762 26 GTQPITCTWMKFRKQIQEG 44 (98)
T ss_pred ccCCCceEEEECCEEecCC
Confidence 4555556666666666543
No 384
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=20.98 E-value=2.5e+02 Score=18.19 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=22.4
Q ss_pred cCCCcHHHHHHHhhhhhCCCCCceEEE
Q 026957 18 ESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (230)
Q Consensus 18 ~~~~tv~~lK~~i~~~~gi~~~~q~l~ 44 (230)
..+.++.+|++.++..++++..+-..+
T Consensus 47 ~~G~~i~~L~~~L~k~~~~~~~~i~v~ 73 (81)
T cd02413 47 EKGRRIRELTSLVQKRFNFPEGSVELY 73 (81)
T ss_pred CCchhHHHHHHHHHHHhCCCCCeEEEE
Confidence 456899999999999999987766654
No 385
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=20.95 E-value=2.6e+02 Score=18.46 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=40.9
Q ss_pred eEEEeeccchHHHHHHhhcccc-C--CCC--C-ceEEEEcC--eecCCCCcccccCCCCCCEEEEEEE
Q 026957 165 ITLEVESSDTIDNVKAKIQDKE-G--IPP--D-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~~~v~~~~tv~~lK~~i~~~~-~--~~~--~-~~~l~~~g--~~l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
.-+.|+..+|+.++=+++.... | +++ . ..++.++| ..+..+.++.+-||.+=+.|.+...
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 4467888899999988876654 4 322 2 35666888 8899999999999999999988754
No 386
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=20.68 E-value=1.7e+02 Score=21.43 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=26.3
Q ss_pred ecCceeeEEEeccCeeEeeecCCCChHHHHH
Q 026957 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVK 103 (230)
Q Consensus 73 ~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK 103 (230)
+++.++|++...+|..+.+++....|+.+.-
T Consensus 32 ~~g~v~I~~~~~dG~~~~v~~~~G~sLLeal 62 (143)
T PTZ00490 32 TPGKVKVCVKKRDGTHCDVEVPVGMSLMHAL 62 (143)
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCccHHHHH
Confidence 4677899999999999999999999887753
No 387
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=20.60 E-value=1.8e+02 Score=21.26 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=22.8
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHH
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|+|...+|...++++.++.|+.+.=.
T Consensus 37 ~I~~~~~dG~~~~v~~~~G~sLLeal~ 63 (143)
T PTZ00490 37 KVCVKKRDGTHCDVEVPVGMSLMHALR 63 (143)
T ss_pred EEEEEcCCCCEEEEEECCCccHHHHHH
Confidence 567777789999999999999998644
No 388
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=20.59 E-value=85 Score=18.99 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=20.6
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhh
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD 32 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~ 32 (230)
|.|.+++.+|..|.++...-.--.-|+..++.
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhh
Confidence 67889999999999985433333334454543
No 389
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.55 E-value=2.5e+02 Score=18.04 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=41.1
Q ss_pred eeccchHHHHHHhhccccCCCCCceEEE-EcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 169 VESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 169 v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+++....--+-+.-.+++.+|+..-.++ -+|.-....++-...-++.||.+.++-|-+=|
T Consensus 33 vpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~iprdrvg 93 (94)
T KOG3483|consen 33 VPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 93 (94)
T ss_pred CCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEeccccccC
Confidence 4444444444445556667888777666 55666677778888889999999998876544
No 390
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=20.10 E-value=1.2e+02 Score=18.06 Aligned_cols=37 Identities=16% Similarity=0.423 Sum_probs=24.9
Q ss_pred HHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeee
Q 026957 25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 25 ~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
+|++.+.+..|+++ ..++++..+.++|+.+=..+.+.
T Consensus 2 ~l~~~~~~~l~~~~---------~~i~~~~~~~~lG~DSl~~~~l~ 38 (67)
T PF00550_consen 2 QLREIIAEVLGVDP---------EEIDPDTDFFDLGLDSLDAIELV 38 (67)
T ss_dssp HHHHHHHHHHTSSG---------GCTSTTSBTTTTTSSHHHHHHHH
T ss_pred HHHHHHHHHHCcCH---------hhCCCCCCHHHhCCchHHHHHHH
Confidence 56777778887665 45677788888888654444443
No 391
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=20.09 E-value=2.6e+02 Score=18.04 Aligned_cols=31 Identities=13% Similarity=0.256 Sum_probs=27.4
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhCCCC
Q 026957 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~ 114 (230)
..|++..+.++..-...++.+++...+|-+.
T Consensus 7 ~~gEKRIi~f~RPvkf~dl~~kv~~afGq~m 37 (79)
T cd06405 7 HNGEKRIIQFPRPVKFKDLQQKVTTAFGQPM 37 (79)
T ss_pred ecCceEEEecCCCccHHHHHHHHHHHhCCee
Confidence 5688889999999999999999999999654
Done!