Query 026957
Match_columns 230
No_of_seqs 280 out of 2388
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 04:03:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 1.2E-38 4.1E-43 238.6 17.3 153 1-153 3-158 (159)
2 3u30_A Ubiquitin, linear DI-ub 100.0 4.5E-38 1.5E-42 238.2 15.3 152 1-152 21-172 (172)
3 3rt3_B Ubiquitin-like protein 100.0 1.4E-37 4.7E-42 232.8 17.6 153 77-229 3-158 (159)
4 3u30_A Ubiquitin, linear DI-ub 100.0 2.5E-37 8.5E-42 234.2 15.9 155 74-228 18-172 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 1.2E-36 4.1E-41 226.1 17.3 152 1-152 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 1.1E-35 3.7E-40 220.9 17.4 152 77-228 1-152 (152)
7 2kdi_A Ubiquitin, vacuolar pro 99.8 1.3E-21 4.6E-26 137.3 3.2 101 1-101 10-113 (114)
8 3phx_B Ubiquitin-like protein 99.8 2.6E-20 8.7E-25 122.6 8.8 74 1-74 5-78 (79)
9 3plu_A Ubiquitin-like modifier 99.8 2.6E-20 8.9E-25 123.4 8.3 70 1-70 22-91 (93)
10 2kk8_A Uncharacterized protein 99.8 2.1E-20 7.3E-25 124.0 7.9 73 1-73 11-84 (84)
11 4fbj_B NEDD8; effector-HOST ta 99.8 5.4E-20 1.8E-24 123.4 8.4 76 1-76 1-76 (88)
12 1yx5_B Ubiquitin; proteasome, 99.8 9.5E-20 3.2E-24 124.7 9.0 91 1-91 1-91 (98)
13 3phx_B Ubiquitin-like protein 99.8 2.2E-19 7.7E-24 118.0 9.3 77 151-227 3-79 (79)
14 2lxa_A Ubiquitin-like protein 99.8 6.6E-20 2.3E-24 121.9 6.5 74 1-74 2-79 (87)
15 4fbj_B NEDD8; effector-HOST ta 99.8 1.6E-19 5.6E-24 121.0 7.9 77 153-229 1-77 (88)
16 2kdi_A Ubiquitin, vacuolar pro 99.8 1.2E-20 4E-25 132.5 2.2 104 74-177 7-113 (114)
17 1ndd_A NEDD8, protein (ubiquit 99.8 3.4E-19 1.2E-23 116.2 8.9 74 1-74 1-74 (76)
18 4eew_A Large proline-rich prot 99.8 3.5E-19 1.2E-23 119.5 8.8 88 136-224 1-88 (88)
19 3v6c_B Ubiquitin; structural g 99.8 2.7E-19 9.1E-24 120.8 8.3 73 1-73 18-90 (91)
20 4eew_A Large proline-rich prot 99.8 2.1E-19 7.1E-24 120.6 7.6 88 60-148 1-88 (88)
21 1sif_A Ubiquitin; hydrophobic 99.8 2.3E-19 8E-24 120.3 7.9 80 151-230 8-87 (88)
22 1uh6_A Ubiquitin-like 5; beta- 99.8 1.4E-19 4.9E-24 122.3 6.6 71 1-71 29-99 (100)
23 2faz_A Ubiquitin-like containi 99.8 2.9E-19 1E-23 117.1 7.8 73 1-73 3-77 (78)
24 1sif_A Ubiquitin; hydrophobic 99.8 3.9E-19 1.3E-23 119.2 8.4 74 1-74 10-83 (88)
25 4dwf_A HLA-B-associated transc 99.8 3.9E-19 1.4E-23 119.8 8.5 73 1-74 6-78 (90)
26 3plu_A Ubiquitin-like modifier 99.8 3.1E-19 1E-23 118.3 7.6 77 70-146 15-91 (93)
27 3dbh_I NEDD8; cell cycle, acti 99.8 3.5E-19 1.2E-23 119.5 8.1 74 1-74 13-86 (88)
28 2hj8_A Interferon-induced 17 k 99.8 3.2E-19 1.1E-23 119.6 7.7 74 1-74 5-78 (88)
29 3a9j_A Ubiquitin; protein comp 99.8 6.6E-19 2.2E-23 114.8 9.0 74 1-74 1-74 (76)
30 4hcn_B Polyubiquitin, ubiquiti 99.8 5.1E-19 1.7E-23 121.0 8.6 74 1-74 23-96 (98)
31 3n3k_B Ubiquitin; hydrolase, p 99.8 5.6E-19 1.9E-23 117.7 7.9 74 1-74 4-77 (85)
32 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 8.7E-19 3E-23 119.5 9.0 78 1-78 2-79 (96)
33 3dbh_I NEDD8; cell cycle, acti 99.8 5.2E-19 1.8E-23 118.7 7.7 78 151-228 11-88 (88)
34 1ndd_A NEDD8, protein (ubiquit 99.8 1E-18 3.4E-23 113.9 8.5 76 153-228 1-76 (76)
35 2dzi_A Ubiquitin-like protein 99.8 1.2E-18 4.1E-23 115.0 8.8 73 1-73 8-80 (81)
36 2uyz_B Small ubiquitin-related 99.8 5.7E-19 2E-23 116.0 7.1 74 1-74 4-77 (79)
37 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 1.1E-18 3.7E-23 119.0 8.8 78 152-229 1-78 (96)
38 3n3k_B Ubiquitin; hydrolase, p 99.8 9.3E-19 3.2E-23 116.6 8.2 78 152-229 3-80 (85)
39 3mtn_B UBA80, ubcep1, ubiquiti 99.8 1.1E-18 3.9E-23 116.2 8.5 74 1-74 4-77 (85)
40 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 1.1E-18 3.7E-23 116.8 8.2 75 1-75 8-82 (87)
41 4hcn_B Polyubiquitin, ubiquiti 99.8 9.1E-19 3.1E-23 119.7 7.9 78 151-228 21-98 (98)
42 3a9j_A Ubiquitin; protein comp 99.8 1.9E-18 6.6E-23 112.5 8.9 76 153-228 1-76 (76)
43 2uyz_B Small ubiquitin-related 99.8 1.1E-18 3.7E-23 114.7 7.7 76 153-228 4-79 (79)
44 2kan_A Uncharacterized protein 99.8 1.2E-18 4.1E-23 118.0 8.0 74 1-75 16-90 (94)
45 1uel_A HHR23B, UV excision rep 99.8 2.4E-18 8.3E-23 116.9 9.5 73 1-73 1-76 (95)
46 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 2E-18 6.9E-23 115.5 9.0 79 151-229 6-84 (87)
47 3m62_B UV excision repair prot 99.8 7.1E-19 2.4E-23 121.9 6.8 74 1-74 2-75 (106)
48 3l0w_B Monoubiquitinated proli 99.8 1.8E-18 6.3E-23 129.5 9.6 99 1-99 1-102 (169)
49 2wyq_A HHR23A, UV excision rep 99.8 2E-18 6.8E-23 115.0 8.6 74 1-74 6-82 (85)
50 1wy8_A NP95-like ring finger p 99.8 2E-18 6.9E-23 116.0 8.5 75 1-75 8-84 (89)
51 2hj8_A Interferon-induced 17 k 99.8 1.3E-18 4.3E-23 116.7 7.4 79 151-229 3-81 (88)
52 4a20_A Ubiquitin-like protein 99.8 1.3E-18 4.5E-23 118.1 7.5 73 1-73 20-96 (98)
53 3mtn_B UBA80, ubcep1, ubiquiti 99.8 2.3E-18 7.7E-23 114.7 8.5 78 152-229 3-80 (85)
54 1yx5_B Ubiquitin; proteasome, 99.8 2.6E-18 8.8E-23 117.6 8.4 89 77-165 1-89 (98)
55 3vdz_A Ubiquitin-40S ribosomal 99.8 2.6E-18 8.8E-23 120.0 8.5 74 1-74 36-109 (111)
56 1wyw_B Ubiquitin-like protein 99.8 1.8E-18 6.1E-23 118.0 7.4 74 1-74 22-95 (97)
57 2bwf_A Ubiquitin-like protein 99.8 3.2E-18 1.1E-22 111.9 8.3 72 1-73 5-76 (77)
58 1wyw_B Ubiquitin-like protein 99.8 2.5E-18 8.5E-23 117.3 7.9 79 150-228 19-97 (97)
59 3b1l_X E3 ubiquitin-protein li 99.6 6.9E-20 2.4E-24 119.5 0.0 74 1-74 1-74 (76)
60 2l7r_A Ubiquitin-like protein 99.7 2.8E-18 9.4E-23 116.1 7.8 72 1-74 20-91 (93)
61 2ojr_A Ubiquitin; lanthide-bin 99.7 2.5E-18 8.7E-23 120.2 7.7 78 151-228 34-111 (111)
62 3q3f_A Ribonuclease/ubiquitin 99.7 2E-18 6.8E-23 130.6 7.6 82 1-82 106-187 (189)
63 3vdz_A Ubiquitin-40S ribosomal 99.7 5.1E-18 1.7E-22 118.5 9.1 77 152-228 35-111 (111)
64 4ajy_B Transcription elongatio 99.7 3.3E-18 1.1E-22 118.4 7.9 74 1-74 1-82 (118)
65 2kan_A Uncharacterized protein 99.7 4.7E-18 1.6E-22 115.1 8.4 78 151-229 14-92 (94)
66 1wy8_A NP95-like ring finger p 99.7 8.3E-18 2.8E-22 113.0 9.5 80 151-230 6-87 (89)
67 2kk8_A Uncharacterized protein 99.7 5.7E-18 2E-22 112.2 8.2 74 75-148 9-83 (84)
68 2fnj_B Transcription elongatio 99.7 4.2E-18 1.4E-22 118.4 7.4 72 1-72 1-80 (118)
69 2l7r_A Ubiquitin-like protein 99.7 3.4E-18 1.2E-22 115.7 6.8 77 150-228 17-93 (93)
70 4ajy_B Transcription elongatio 99.7 9.8E-18 3.3E-22 116.0 8.6 77 153-230 1-85 (118)
71 3v6c_B Ubiquitin; structural g 99.7 9.3E-18 3.2E-22 113.2 8.4 76 151-226 16-91 (91)
72 2fnj_B Transcription elongatio 99.7 6.8E-18 2.3E-22 117.3 7.7 77 153-230 1-85 (118)
73 1ttn_A DC-UBP, dendritic cell- 99.7 6.3E-18 2.1E-22 117.2 7.5 74 1-74 24-97 (106)
74 2ojr_A Ubiquitin; lanthide-bin 99.7 1.5E-17 5.2E-22 116.2 9.2 93 60-152 11-111 (111)
75 2faz_A Ubiquitin-like containi 99.7 1.8E-17 6.2E-22 108.5 9.0 75 151-225 1-77 (78)
76 4dwf_A HLA-B-associated transc 99.7 1.9E-17 6.5E-22 111.4 9.0 77 151-228 4-80 (90)
77 1v2y_A 3300001G02RIK protein; 99.7 3.3E-18 1.1E-22 117.1 5.2 74 1-74 8-97 (105)
78 1wgd_A Homocysteine-responsive 99.7 1.1E-17 3.7E-22 113.3 7.6 74 1-74 8-87 (93)
79 1yqb_A Ubiquilin 3; structural 99.7 1E-17 3.6E-22 114.7 7.6 74 1-75 23-96 (100)
80 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.7E-17 6E-22 113.8 8.5 73 1-74 26-98 (101)
81 1wx8_A Riken cDNA 4931431F19; 99.7 8.8E-18 3E-22 114.5 6.7 73 1-74 18-90 (96)
82 1uh6_A Ubiquitin-like 5; beta- 99.7 1.2E-17 4.2E-22 112.9 7.1 71 76-146 28-98 (100)
83 1wju_A NEDD8 ultimate buster-1 99.7 2.9E-17 9.8E-22 111.1 8.1 74 155-229 18-95 (100)
84 2lxa_A Ubiquitin-like protein 99.7 1.8E-17 6.1E-22 110.1 7.0 74 77-150 2-79 (87)
85 2dzi_A Ubiquitin-like protein 99.7 4.6E-17 1.6E-21 107.3 8.7 75 75-149 6-80 (81)
86 3l0w_B Monoubiquitinated proli 99.7 2.2E-17 7.6E-22 123.6 7.8 82 77-158 1-82 (169)
87 1we6_A Splicing factor, putati 99.7 2.5E-17 8.5E-22 115.1 7.4 74 1-74 28-105 (111)
88 1wgd_A Homocysteine-responsive 99.7 3.6E-17 1.2E-21 110.7 7.6 79 151-229 6-90 (93)
89 1wgh_A Ubiquitin-like 3, HCG-1 99.7 5E-17 1.7E-21 113.3 8.3 74 1-74 17-100 (116)
90 3u5e_m 60S ribosomal protein L 99.7 1.1E-18 3.9E-23 125.0 0.0 74 1-74 1-74 (128)
91 1j8c_A Ubiquitin-like protein 99.7 5.2E-17 1.8E-21 115.5 8.5 73 1-74 33-105 (125)
92 1we6_A Splicing factor, putati 99.7 3.4E-17 1.2E-21 114.4 7.4 80 150-229 25-108 (111)
93 3m63_B Ubiquitin domain-contai 99.7 1.3E-17 4.5E-22 114.3 5.2 92 54-148 8-99 (101)
94 1wx7_A Ubiquilin 3; ubiquitin- 99.7 4.7E-17 1.6E-21 112.8 7.8 73 1-74 18-90 (106)
95 1v5o_A 1700011N24RIK protein; 99.7 3.7E-17 1.3E-21 112.4 7.2 74 1-74 8-86 (102)
96 4dbg_A Ranbp-type and C3HC4-ty 99.7 6.3E-17 2.2E-21 110.2 8.1 73 1-73 25-100 (105)
97 1wju_A NEDD8 ultimate buster-1 99.7 4.6E-17 1.6E-21 110.0 7.4 68 3-70 18-89 (100)
98 2wyq_A HHR23A, UV excision rep 99.7 1E-16 3.5E-21 106.6 8.6 76 75-150 4-82 (85)
99 2kd0_A LRR repeats and ubiquit 99.7 7.7E-17 2.6E-21 107.1 7.9 71 3-73 14-84 (85)
100 3q3f_A Ribonuclease/ubiquitin 99.7 6.7E-17 2.3E-21 122.2 8.5 82 148-229 101-182 (189)
101 1uel_A HHR23B, UV excision rep 99.7 1.7E-16 5.7E-21 107.8 9.5 76 153-228 1-79 (95)
102 3m63_B Ubiquitin domain-contai 99.7 1.7E-17 5.7E-22 113.8 4.4 71 1-72 29-99 (101)
103 1v5t_A 8430435I17RIK protein; 99.7 4.8E-17 1.7E-21 109.3 6.3 73 1-74 8-84 (90)
104 2dzm_A FAS-associated factor 1 99.7 6E-17 2E-21 110.1 6.7 73 1-73 9-82 (100)
105 3u5c_f 40S ribosomal protein S 99.7 2.7E-18 9.2E-23 125.8 0.0 74 1-74 1-74 (152)
106 1se9_A Ubiquitin family; ubiqu 99.7 1.2E-16 4.1E-21 112.3 8.3 74 1-74 17-104 (126)
107 2gow_A HCG-1 protein, ubiquiti 99.7 9.1E-17 3.1E-21 113.5 7.7 74 1-74 18-101 (125)
108 1wgg_A Ubiquitin carboxyl-term 99.7 6.4E-17 2.2E-21 109.8 6.7 72 1-74 8-80 (96)
109 3m62_B UV excision repair prot 99.7 6.1E-17 2.1E-21 112.1 6.6 74 77-150 2-75 (106)
110 4a20_A Ubiquitin-like protein 99.7 2.4E-16 8.3E-21 106.9 9.4 77 150-226 17-97 (98)
111 3b1l_X E3 ubiquitin-protein li 99.5 3.3E-18 1.1E-22 111.5 0.0 75 153-227 1-75 (76)
112 2kdb_A Homocysteine-responsive 99.7 6.1E-17 2.1E-21 110.1 6.3 70 1-70 24-99 (99)
113 1we7_A SF3A1 protein; structur 99.7 1.8E-16 6.3E-21 111.4 8.7 69 161-229 44-112 (115)
114 1yqb_A Ubiquilin 3; structural 99.7 1.6E-16 5.6E-21 108.7 8.2 78 151-229 21-98 (100)
115 1ttn_A DC-UBP, dendritic cell- 99.7 2.1E-16 7.2E-21 109.4 8.5 79 151-229 22-100 (106)
116 1wx8_A Riken cDNA 4931431F19; 99.7 6.7E-17 2.3E-21 110.1 5.9 77 152-229 17-93 (96)
117 2bwf_A Ubiquitin-like protein 99.7 3.7E-16 1.3E-20 101.9 9.0 72 153-225 5-76 (77)
118 1v2y_A 3300001G02RIK protein; 99.7 4.8E-17 1.6E-21 111.3 4.7 77 152-228 7-99 (105)
119 3u5e_m 60S ribosomal protein L 99.7 6.9E-18 2.4E-22 120.9 0.3 77 153-229 1-77 (128)
120 1j8c_A Ubiquitin-like protein 99.7 3.1E-16 1E-20 111.5 8.7 77 152-229 32-108 (125)
121 1wx7_A Ubiquilin 3; ubiquitin- 99.6 4.3E-16 1.5E-20 107.9 8.2 77 152-229 17-93 (106)
122 3u5c_f 40S ribosomal protein S 99.6 1.2E-17 4.1E-22 122.3 0.0 77 153-229 1-77 (152)
123 2klc_A Ubiquilin-1; ubiquitin- 99.6 8E-16 2.7E-20 105.5 9.1 81 147-228 20-100 (101)
124 1v5o_A 1700011N24RIK protein; 99.6 3.2E-16 1.1E-20 107.7 7.1 78 152-229 7-89 (102)
125 1wxv_A BAG-family molecular ch 99.6 4.7E-16 1.6E-20 105.0 7.8 73 1-74 8-86 (92)
126 1v86_A DNA segment, CHR 7, way 99.6 1.7E-16 5.9E-21 107.6 5.6 71 1-73 18-88 (95)
127 1x1m_A Ubiquitin-like protein 99.6 3E-16 1E-20 108.8 6.9 74 1-74 13-101 (107)
128 1we7_A SF3A1 protein; structur 99.6 7.4E-16 2.5E-20 108.2 8.7 79 75-153 24-112 (115)
129 1se9_A Ubiquitin family; ubiqu 99.6 1.4E-15 4.9E-20 106.8 9.9 79 151-229 15-107 (126)
130 1wgh_A Ubiquitin-like 3, HCG-1 99.6 7.5E-16 2.6E-20 107.3 8.4 80 72-151 12-101 (116)
131 1wia_A Hypothetical ubiquitin- 99.6 5E-16 1.7E-20 105.5 7.4 71 1-74 8-79 (95)
132 2dzj_A Synaptic glycoprotein S 99.6 3.9E-16 1.3E-20 104.1 5.6 69 1-69 11-85 (88)
133 2daf_A FLJ35834 protein; hypot 99.6 1.1E-15 3.7E-20 105.1 7.3 77 2-78 17-94 (118)
134 2kjr_A CG11242; UBL, ubiquitin 99.6 1.3E-15 4.6E-20 102.8 7.7 69 2-70 17-93 (95)
135 4b6w_A Tubulin-specific chaper 99.6 1.2E-15 4E-20 101.2 7.2 72 2-73 4-84 (86)
136 4dbg_A Ranbp-type and C3HC4-ty 99.6 3.3E-15 1.1E-19 101.8 8.3 73 76-148 24-99 (105)
137 1v5t_A 8430435I17RIK protein; 99.6 5.1E-15 1.7E-19 99.3 8.7 74 75-149 6-83 (90)
138 2gow_A HCG-1 protein, ubiquiti 99.6 3.4E-15 1.2E-19 105.4 8.2 77 153-229 18-104 (125)
139 2xzm_9 RPS31E; ribosome, trans 99.6 8.7E-17 3E-21 120.8 0.0 69 1-74 1-69 (189)
140 2daf_A FLJ35834 protein; hypot 99.6 5.8E-15 2E-19 101.5 8.7 77 76-152 15-92 (118)
141 2kd0_A LRR repeats and ubiquit 99.6 3.6E-15 1.2E-19 99.0 7.5 69 80-148 15-83 (85)
142 2kdb_A Homocysteine-responsive 99.6 2.3E-15 7.9E-20 102.3 6.5 72 75-146 22-99 (99)
143 2io1_B Small ubiquitin-related 99.6 7.3E-15 2.5E-19 99.0 8.5 79 152-230 7-85 (94)
144 3ai5_A Yeast enhanced green fl 99.6 3.8E-15 1.3E-19 120.5 8.2 73 1-73 234-306 (307)
145 1x1m_A Ubiquitin-like protein 99.6 8.4E-15 2.9E-19 101.5 8.5 76 75-150 11-101 (107)
146 2kj6_A Tubulin folding cofacto 99.6 5.3E-15 1.8E-19 100.1 7.2 70 2-71 16-94 (97)
147 1wia_A Hypothetical ubiquitin- 99.6 1.8E-14 6.2E-19 97.7 9.1 75 151-228 6-81 (95)
148 1wf9_A NPL4 family protein; be 99.6 6.6E-15 2.3E-19 101.9 6.7 72 1-73 8-95 (107)
149 2io0_B Small ubiquitin-related 99.5 3.9E-14 1.3E-18 94.7 9.5 79 152-230 5-83 (91)
150 2kjr_A CG11242; UBL, ubiquitin 99.5 2.2E-14 7.4E-19 96.8 8.1 73 74-146 13-93 (95)
151 4b6w_A Tubulin-specific chaper 99.5 1E-14 3.4E-19 96.7 6.3 67 83-149 11-84 (86)
152 1wgg_A Ubiquitin carboxyl-term 99.5 1.1E-14 3.7E-19 98.8 6.6 70 153-224 8-78 (96)
153 1t0y_A Tubulin folding cofacto 99.5 1.7E-14 5.9E-19 102.2 7.8 72 1-72 7-86 (122)
154 1wxv_A BAG-family molecular ch 99.5 2.2E-14 7.5E-19 96.7 8.0 75 75-150 6-86 (92)
155 1v6e_A Cytoskeleton-associated 99.5 2.2E-14 7.5E-19 97.2 6.9 70 2-71 9-86 (95)
156 2dzm_A FAS-associated factor 1 99.5 1.7E-14 5.8E-19 97.9 6.0 74 152-225 8-82 (100)
157 1v86_A DNA segment, CHR 7, way 99.5 2E-14 6.8E-19 97.4 6.3 72 75-148 16-87 (95)
158 1oqy_A HHR23A, UV excision rep 99.5 2E-14 6.8E-19 119.5 7.1 73 1-73 8-84 (368)
159 2kj6_A Tubulin folding cofacto 99.5 9.7E-14 3.3E-18 93.9 8.2 72 76-147 14-94 (97)
160 2xzm_9 RPS31E; ribosome, trans 99.5 2.6E-15 8.7E-20 112.8 0.1 72 153-229 1-72 (189)
161 2dzj_A Synaptic glycoprotein S 99.5 3.2E-14 1.1E-18 94.7 5.4 70 76-145 10-85 (88)
162 3ai5_A Yeast enhanced green fl 99.5 1.1E-13 3.8E-18 111.9 8.9 78 149-226 230-307 (307)
163 2d07_B Ubiquitin-like protein 99.5 1.9E-13 6.4E-18 91.9 8.6 77 152-228 17-93 (93)
164 2kzr_A Ubiquitin thioesterase 99.5 7.4E-14 2.5E-18 92.8 5.5 71 1-72 1-77 (86)
165 2io1_B Small ubiquitin-related 99.4 2.3E-13 7.8E-18 91.6 7.6 75 1-75 8-82 (94)
166 1wz0_A Ubiquitin-like protein 99.4 2E-13 6.7E-18 93.4 6.7 79 152-230 24-102 (104)
167 1oqy_A HHR23A, UV excision rep 99.4 1.9E-13 6.6E-18 113.6 7.3 79 151-229 6-88 (368)
168 2eke_C Ubiquitin-like protein 99.4 5.4E-13 1.9E-17 91.3 8.3 76 152-228 31-106 (106)
169 3shq_A UBLCP1; phosphatase, hy 99.4 1.9E-13 6.7E-18 111.9 6.6 75 1-76 6-83 (320)
170 1v6e_A Cytoskeleton-associated 99.4 4.4E-13 1.5E-17 90.7 6.7 71 77-147 8-86 (95)
171 1wm3_A Ubiquitin-like protein 99.4 1.1E-12 3.9E-17 84.0 7.6 70 1-70 2-71 (72)
172 2io0_B Small ubiquitin-related 99.4 1.1E-12 3.8E-17 87.6 7.6 79 75-153 4-82 (91)
173 1wf9_A NPL4 family protein; be 99.4 5.5E-13 1.9E-17 92.2 5.9 72 76-148 7-94 (107)
174 1t0y_A Tubulin folding cofacto 99.4 1.8E-12 6.2E-17 91.7 8.4 72 153-224 7-86 (122)
175 2k8h_A Small ubiquitin protein 99.4 6.2E-13 2.1E-17 91.7 5.6 78 152-229 26-103 (110)
176 1wm3_A Ubiquitin-like protein 99.3 4.3E-12 1.5E-16 81.2 8.1 70 153-222 2-71 (72)
177 2d07_B Ubiquitin-like protein 99.3 3.1E-12 1.1E-16 86.0 7.0 78 75-152 16-93 (93)
178 2kzr_A Ubiquitin thioesterase 99.3 2.5E-12 8.4E-17 85.4 6.2 70 77-147 1-76 (86)
179 3a4r_A Nfatc2-interacting prot 99.3 7.2E-12 2.5E-16 81.6 7.8 70 1-70 8-78 (79)
180 2k8h_A Small ubiquitin protein 99.3 4.9E-12 1.7E-16 87.2 7.2 81 74-154 24-104 (110)
181 1wz0_A Ubiquitin-like protein 99.3 7.9E-12 2.7E-16 85.4 7.8 74 1-74 25-98 (104)
182 3a4r_A Nfatc2-interacting prot 99.3 2.3E-11 8E-16 79.2 8.9 73 74-146 5-78 (79)
183 2eke_C Ubiquitin-like protein 99.3 7.8E-12 2.7E-16 85.5 6.8 78 74-152 29-106 (106)
184 1wjn_A Tubulin-folding protein 99.3 1.3E-11 4.6E-16 83.7 7.6 71 2-72 11-92 (97)
185 3shq_A UBLCP1; phosphatase, hy 99.2 7.7E-12 2.6E-16 102.4 6.5 71 153-224 6-79 (320)
186 3kyd_D Small ubiquitin-related 99.2 2.2E-10 7.6E-15 79.0 9.2 75 153-227 41-115 (115)
187 1wjn_A Tubulin-folding protein 99.1 2.7E-10 9.1E-15 77.2 8.9 65 160-224 20-92 (97)
188 3tix_A Ubiquitin-like protein 99.1 2.4E-10 8.4E-15 84.8 6.7 76 153-229 58-133 (207)
189 3pge_A SUMO-modified prolifera 99.0 7.7E-10 2.6E-14 83.9 8.5 76 153-229 30-105 (200)
190 3kyd_D Small ubiquitin-related 99.0 2E-09 6.7E-14 74.3 7.8 75 75-149 39-113 (115)
191 3v7o_A Minor nucleoprotein VP3 98.9 1.4E-10 4.6E-15 87.4 0.4 79 150-229 19-97 (227)
192 3goe_A DNA repair protein RAD6 98.9 1.8E-08 6.2E-13 63.3 8.8 70 154-223 11-81 (82)
193 3pge_A SUMO-modified prolifera 98.8 7.5E-09 2.6E-13 78.5 7.4 79 73-152 26-104 (200)
194 3tix_A Ubiquitin-like protein 98.8 4.2E-09 1.4E-13 78.3 5.3 80 73-153 54-133 (207)
195 2pjh_A Protein NPL4, nuclear p 98.8 4.5E-09 1.5E-13 68.3 4.1 69 1-70 5-78 (80)
196 3goe_A DNA repair protein RAD6 98.8 3.9E-08 1.3E-12 61.8 8.0 71 77-147 10-81 (82)
197 3v7o_A Minor nucleoprotein VP3 98.7 2.4E-09 8.2E-14 80.6 0.1 82 71-153 16-97 (227)
198 2jxx_A Nfatc2-interacting prot 98.6 2.1E-07 7.1E-12 62.3 8.1 70 153-222 26-96 (97)
199 2pjh_A Protein NPL4, nuclear p 98.6 5.2E-08 1.8E-12 63.2 5.0 70 76-146 4-78 (80)
200 4efo_A Serine/threonine-protei 98.6 2.1E-07 7.2E-12 61.6 7.3 54 8-61 21-76 (94)
201 2al3_A TUG long isoform; TUG U 98.5 1.9E-07 6.4E-12 61.0 6.2 74 151-224 8-81 (90)
202 3uf8_A Ubiquitin-like protein 98.5 2.3E-07 7.9E-12 71.5 7.9 79 150-229 19-97 (209)
203 3ivf_A Talin-1; FERM domain, c 98.5 5.3E-06 1.8E-10 69.5 16.5 143 78-224 5-167 (371)
204 2jxx_A Nfatc2-interacting prot 98.5 6.2E-07 2.1E-11 60.0 8.2 73 74-146 23-96 (97)
205 3ix6_A TS, tsase, thymidylate 98.4 2.2E-08 7.5E-13 82.3 0.0 79 150-229 19-97 (360)
206 2l76_A Nfatc2-interacting prot 98.4 1.2E-06 3.9E-11 57.8 7.5 71 153-224 22-92 (95)
207 2al3_A TUG long isoform; TUG U 98.3 3.4E-06 1.1E-10 55.0 7.6 74 75-148 8-81 (90)
208 3ivf_A Talin-1; FERM domain, c 98.3 3E-05 1E-09 64.8 15.5 133 10-145 12-164 (371)
209 3ix6_A TS, tsase, thymidylate 98.3 1E-07 3.5E-12 78.3 -0.0 83 70-153 15-97 (360)
210 2l76_A Nfatc2-interacting prot 98.3 5.7E-06 1.9E-10 54.5 8.0 72 75-147 20-91 (95)
211 3uf8_A Ubiquitin-like protein 98.2 3.4E-06 1.2E-10 64.9 6.8 82 70-152 15-96 (209)
212 4da1_A Protein phosphatase 1K, 98.2 2.1E-07 7.2E-12 78.5 0.0 76 153-229 31-106 (389)
213 4efo_A Serine/threonine-protei 98.1 4.7E-06 1.6E-10 55.1 5.6 55 83-137 20-76 (94)
214 2kc2_A Talin-1, F1; FERM, adhe 98.1 5.7E-06 2E-10 58.0 5.4 69 3-71 14-121 (128)
215 2ylm_A Ubiquitin carboxyl-term 98.1 0.00015 5.1E-09 63.4 15.4 183 13-196 38-286 (530)
216 2kc2_A Talin-1, F1; FERM, adhe 98.0 9E-06 3.1E-10 57.0 5.3 71 154-224 13-122 (128)
217 4da1_A Protein phosphatase 1K, 97.9 1.9E-06 6.4E-11 72.7 0.0 82 75-157 29-110 (389)
218 3qx1_A FAS-associated factor 1 97.8 0.00013 4.5E-09 47.4 7.8 70 153-223 8-82 (84)
219 2bps_A YUKD protein; ubiquitin 97.7 8.3E-05 2.8E-09 47.8 6.0 68 2-69 6-80 (81)
220 2bps_A YUKD protein; ubiquitin 97.7 0.00011 3.8E-09 47.2 6.3 62 160-221 14-80 (81)
221 3qx1_A FAS-associated factor 1 97.6 0.00039 1.3E-08 45.2 8.0 68 2-70 9-81 (84)
222 2ylm_A Ubiquitin carboxyl-term 97.5 0.017 5.7E-07 50.5 19.4 210 2-211 132-408 (530)
223 1wj4_A KIAA0794 protein; UBX d 97.4 0.00068 2.3E-08 47.4 7.9 72 74-146 41-117 (124)
224 2dzk_A UBX domain-containing p 97.3 0.00092 3.1E-08 45.7 7.0 72 153-224 14-90 (109)
225 1wj4_A KIAA0794 protein; UBX d 97.2 0.00075 2.6E-08 47.2 6.0 70 153-223 44-118 (124)
226 2dzk_A UBX domain-containing p 97.2 0.0024 8.2E-08 43.6 8.2 70 2-71 15-89 (109)
227 2daj_A KIAA0977 protein, COBL- 96.9 0.0035 1.2E-07 39.9 6.4 66 74-139 8-76 (91)
228 3jyu_A Ubiquitin carboxyl-term 96.9 0.016 5.6E-07 44.9 11.7 66 165-230 154-226 (231)
229 2l32_A Small archaeal modifier 96.9 0.0052 1.8E-07 38.7 7.2 61 1-71 1-61 (74)
230 2daj_A KIAA0977 protein, COBL- 96.9 0.0019 6.3E-08 41.2 4.9 63 153-215 11-76 (91)
231 2cr5_A Reproduction 8; UBX dom 96.7 0.006 2.1E-07 41.5 7.2 71 153-224 24-98 (109)
232 4a3p_A Ubiquitin carboxyl-term 96.7 0.0043 1.5E-07 47.8 6.6 67 164-230 141-214 (217)
233 2cr5_A Reproduction 8; UBX dom 96.5 0.011 3.6E-07 40.3 7.2 71 76-147 23-97 (109)
234 1s3s_G P47 protein; AAA ATPase 96.2 0.014 4.7E-07 40.9 6.6 69 75-143 51-123 (127)
235 1s3s_G P47 protein; AAA ATPase 96.2 0.0077 2.6E-07 42.2 5.1 67 153-219 53-123 (127)
236 1ryj_A Unknown; beta/alpha pro 95.8 0.16 5.5E-06 31.3 9.4 67 152-228 4-70 (70)
237 4e71_A Plexin-B2, MM1; transme 95.7 0.047 1.6E-06 36.9 6.9 62 10-71 23-109 (111)
238 4a3p_A Ubiquitin carboxyl-term 95.6 0.036 1.2E-06 42.5 7.1 64 88-151 141-211 (217)
239 2juo_A GA-binding protein alph 95.4 0.052 1.8E-06 34.4 5.9 61 13-73 5-65 (89)
240 4e71_A Plexin-B2, MM1; transme 95.3 0.078 2.7E-06 35.9 7.0 62 86-147 23-109 (111)
241 2r2o_A Plexin-B1; effector dom 95.2 0.09 3.1E-06 36.9 7.4 65 162-226 40-130 (138)
242 2juo_A GA-binding protein alph 95.2 0.11 3.9E-06 32.9 7.0 61 165-225 5-65 (89)
243 2r2o_A Plexin-B1; effector dom 95.2 0.078 2.7E-06 37.2 6.8 64 87-150 41-130 (138)
244 3jyu_A Ubiquitin carboxyl-term 95.1 0.061 2.1E-06 41.7 6.9 64 89-152 154-224 (231)
245 2l32_A Small archaeal modifier 95.0 0.053 1.8E-06 34.0 5.2 66 77-152 1-66 (74)
246 1oey_A P67-PHOX, neutrophil cy 94.8 0.071 2.4E-06 34.1 5.5 44 2-47 7-50 (83)
247 3h6n_A Plexin-D1; structural g 94.6 0.3 1E-05 33.7 8.5 65 161-225 15-105 (127)
248 1ryj_A Unknown; beta/alpha pro 94.5 0.2 6.7E-06 30.9 7.0 65 76-150 4-68 (70)
249 1oey_A P67-PHOX, neutrophil cy 94.4 0.097 3.3E-06 33.5 5.4 46 77-124 6-51 (83)
250 3h6n_A Plexin-D1; structural g 94.4 0.26 8.8E-06 34.0 7.8 65 9-73 15-105 (127)
251 1tyg_B YJBS; alpha beta barrel 93.4 0.28 9.7E-06 31.7 6.2 61 161-228 26-87 (87)
252 3rpf_C Molybdopterin convertin 93.1 0.36 1.2E-05 30.0 6.3 68 1-73 1-71 (74)
253 1vjk_A Molybdopterin convertin 93.1 0.62 2.1E-05 30.6 7.8 73 151-228 8-98 (98)
254 2kvr_A Ubiquitin carboxyl-term 93.1 0.1 3.4E-06 36.6 4.0 34 13-46 58-91 (130)
255 4e74_A Plexin-A4; RBD, structu 93.0 0.24 8.1E-06 33.8 5.6 64 162-225 26-115 (117)
256 1vjk_A Molybdopterin convertin 93.0 0.61 2.1E-05 30.6 7.7 71 75-150 8-96 (98)
257 2kl0_A Putative thiamin biosyn 92.6 0.22 7.4E-06 31.1 4.7 61 1-72 1-61 (73)
258 1tyg_B YJBS; alpha beta barrel 92.3 0.4 1.4E-05 30.9 5.8 67 75-151 19-86 (87)
259 4e74_A Plexin-A4; RBD, structu 92.3 0.38 1.3E-05 32.8 5.8 63 11-73 27-115 (117)
260 2k5p_A THis protein, thiamine- 92.2 0.41 1.4E-05 30.2 5.7 65 1-73 1-66 (78)
261 3kuz_A Plexin-C1; structural g 92.1 0.64 2.2E-05 32.0 6.8 60 11-70 39-124 (126)
262 1ip9_A BEM1 protein; ubiquitin 91.9 0.19 6.6E-06 32.0 3.8 30 8-37 19-48 (85)
263 3rpf_C Molybdopterin convertin 91.8 1.1 3.8E-05 27.6 7.4 58 166-228 15-74 (74)
264 2cu3_A Unknown function protei 91.3 0.49 1.7E-05 28.4 5.1 60 161-228 5-64 (64)
265 1f0z_A THis protein; ubiquitin 91.1 0.32 1.1E-05 29.5 4.1 61 161-228 6-66 (66)
266 1ef1_A Moesin; membrane, FERM 90.9 1.1 3.6E-05 35.7 8.3 72 153-225 2-79 (294)
267 1vd2_A Protein kinase C, IOTA 90.5 1.2 4.1E-05 28.8 6.6 40 8-47 13-53 (89)
268 2kl0_A Putative thiamin biosyn 90.1 0.45 1.5E-05 29.5 4.2 61 161-229 6-66 (73)
269 2k5p_A THis protein, thiamine- 89.8 0.32 1.1E-05 30.7 3.4 62 161-229 6-70 (78)
270 1h4r_A Merlin; FERM, neurofibr 89.6 1.5 5.1E-05 35.2 8.2 74 151-225 21-99 (314)
271 3kuz_A Plexin-C1; structural g 89.6 1.5 5.1E-05 30.1 6.8 61 163-223 39-125 (126)
272 1vd2_A Protein kinase C, IOTA 89.5 1.6 5.4E-05 28.2 6.6 48 77-125 7-55 (89)
273 2kvr_A Ubiquitin carboxyl-term 89.2 0.45 1.5E-05 33.2 4.1 33 89-121 58-90 (130)
274 3po0_A Small archaeal modifier 89.2 1.3 4.3E-05 28.4 6.1 61 87-152 18-89 (89)
275 1f0z_A THis protein; ubiquitin 89.0 0.53 1.8E-05 28.5 3.9 60 85-151 6-65 (66)
276 3po0_A Small archaeal modifier 88.8 1.4 4.9E-05 28.1 6.2 61 163-228 18-89 (89)
277 2i1j_A Moesin; FERM, coiled-co 88.5 1.8 6.3E-05 38.0 8.5 73 152-225 4-82 (575)
278 3dwg_C 9.5 kDa culture filtrat 88.3 1.9 6.3E-05 27.8 6.5 71 1-73 1-90 (93)
279 1fm0_D Molybdopterin convertin 87.6 1.2 3.9E-05 27.9 5.0 59 164-228 18-81 (81)
280 4eut_A Serine/threonine-protei 87.4 2.1 7.1E-05 35.3 7.9 40 9-48 320-359 (396)
281 3qa8_A MGC80376 protein; kinas 86.6 0.74 2.5E-05 41.3 4.9 51 9-59 320-371 (676)
282 1fm0_D Molybdopterin convertin 86.5 1.1 3.7E-05 28.1 4.4 58 88-151 18-80 (81)
283 2q5w_D Molybdopterin convertin 86.0 1.2 4.1E-05 27.6 4.4 58 88-151 17-76 (77)
284 1ef1_A Moesin; membrane, FERM 85.4 3.9 0.00013 32.3 8.2 68 1-69 2-75 (294)
285 2q5w_D Molybdopterin convertin 85.3 1 3.4E-05 27.9 3.8 59 164-228 17-77 (77)
286 1h4r_A Merlin; FERM, neurofibr 84.9 4.8 0.00016 32.2 8.6 65 2-67 24-93 (314)
287 1ip9_A BEM1 protein; ubiquitin 84.7 5.5 0.00019 25.3 6.8 46 75-123 11-57 (85)
288 3dwg_C 9.5 kDa culture filtrat 84.2 6.2 0.00021 25.2 7.5 61 166-228 20-93 (93)
289 1wgy_A RAP guanine nucleotide 84.1 4.5 0.00016 26.8 6.6 73 76-148 9-86 (104)
290 1rws_A Hypothetical protein PF 83.5 0.51 1.7E-05 29.6 1.7 52 90-150 24-75 (77)
291 3hm6_X Plexin-B1; structural g 83.4 5.3 0.00018 35.1 8.4 65 162-226 273-363 (644)
292 3ig3_A Plxna3 protein; plexin 83.3 4.8 0.00017 35.3 8.1 63 11-73 247-335 (627)
293 2cu3_A Unknown function protei 83.1 1.5 5E-05 26.2 3.6 60 84-151 4-63 (64)
294 1rws_A Hypothetical protein PF 83.1 0.38 1.3E-05 30.2 1.0 54 166-228 24-77 (77)
295 3ig3_A Plxna3 protein; plexin 82.7 5.7 0.00019 34.9 8.3 65 162-226 246-336 (627)
296 2g1e_A Hypothetical protein TA 82.0 3.2 0.00011 26.3 5.3 61 167-228 19-90 (90)
297 2kmm_A Guanosine-3',5'-BIS(dip 82.0 4.4 0.00015 24.5 5.7 61 1-70 1-61 (73)
298 3qij_A Protein 4.1; cytoskelet 81.1 3.8 0.00013 32.6 6.4 74 151-224 16-95 (296)
299 1wgk_A Riken cDNA 2900073H19 p 80.5 7.3 0.00025 26.3 6.8 74 76-152 11-108 (114)
300 1q1o_A Cell division control p 80.5 1.9 6.6E-05 28.3 3.7 28 10-37 22-49 (98)
301 2i1j_A Moesin; FERM, coiled-co 79.9 8 0.00027 34.0 8.5 68 1-69 5-78 (575)
302 1wgr_A Growth factor receptor- 79.6 4.1 0.00014 26.9 5.1 61 75-135 8-75 (100)
303 3hm6_X Plexin-B1; structural g 79.4 5.6 0.00019 35.0 7.2 63 11-73 274-362 (644)
304 3qij_A Protein 4.1; cytoskelet 79.3 3.1 0.00011 33.1 5.4 59 1-59 18-82 (296)
305 2c7h_A RBBP6, retinoblastoma-b 76.7 9.6 0.00033 24.3 6.0 70 155-228 9-84 (86)
306 2qjl_A URM1, ubiquitin-related 76.3 11 0.00039 24.4 6.7 64 87-151 20-98 (99)
307 1wgy_A RAP guanine nucleotide 75.1 13 0.00043 24.7 6.4 65 9-73 18-87 (104)
308 2qjl_A URM1, ubiquitin-related 74.0 15 0.00052 23.7 7.6 35 1-35 2-46 (99)
309 1wgr_A Growth factor receptor- 73.6 6.9 0.00024 25.8 4.9 37 3-39 12-48 (100)
310 1j0g_A Hypothetical protein 18 73.6 11 0.00039 23.5 5.5 64 166-229 27-91 (92)
311 3r8s_T 50S ribosomal protein L 73.4 5.1 0.00018 26.0 4.2 40 10-49 27-67 (93)
312 1wgk_A Riken cDNA 2900073H19 p 73.4 18 0.00061 24.3 8.7 63 164-229 31-109 (114)
313 2kmm_A Guanosine-3',5'-BIS(dip 72.7 9.4 0.00032 22.9 5.3 63 153-224 1-63 (73)
314 2g1e_A Hypothetical protein TA 72.6 5.9 0.0002 25.0 4.5 59 91-150 19-88 (90)
315 2k9x_A Tburm1, uncharacterized 71.9 2.4 8.3E-05 28.5 2.5 75 77-153 5-103 (110)
316 2dhz_A RAP guanine nucleotide 71.2 13 0.00043 25.4 5.9 72 75-146 8-90 (120)
317 1vq8_S 50S ribosomal protein L 70.9 5.5 0.00019 25.4 3.8 33 10-42 22-54 (85)
318 2kmc_A Fermitin family homolog 70.5 19 0.00066 23.5 8.5 71 2-72 21-99 (102)
319 1y8x_B Ubiquitin-activating en 69.9 4.2 0.00014 26.7 3.2 60 11-70 5-82 (98)
320 2zjd_A Microtubule-associated 69.8 15 0.00052 25.4 6.2 75 74-148 33-119 (130)
321 4eut_A Serine/threonine-protei 69.8 16 0.00056 29.8 7.7 53 84-136 319-373 (396)
322 1y8x_B Ubiquitin-activating en 69.8 5.8 0.0002 26.0 3.9 60 163-222 5-82 (98)
323 2l52_A Methanosarcina acetivor 69.6 20 0.00068 23.2 7.1 68 1-72 4-95 (99)
324 1q1o_A Cell division control p 69.4 7.8 0.00027 25.4 4.4 48 77-124 6-65 (98)
325 2r2q_A Gamma-aminobutyric acid 69.1 15 0.00051 24.5 5.9 72 75-146 26-107 (110)
326 3qa8_A MGC80376 protein; kinas 68.6 5.3 0.00018 35.8 4.6 52 84-135 319-371 (676)
327 2c7h_A RBBP6, retinoblastoma-b 67.9 21 0.00071 22.7 7.1 54 89-146 20-78 (86)
328 2k9x_A Tburm1, uncharacterized 65.9 5.1 0.00018 26.9 3.1 65 162-228 20-102 (110)
329 2zjr_Q 50S ribosomal protein L 65.7 7 0.00024 25.5 3.6 37 12-48 24-61 (95)
330 3j21_T 50S ribosomal protein L 65.7 8.6 0.00029 24.5 3.9 33 10-42 23-55 (86)
331 3tve_T 50S ribosomal protein L 65.3 7.7 0.00026 25.1 3.7 39 10-48 21-60 (92)
332 3ge3_C Toluene-4-monooxygenase 62.9 26 0.00088 22.1 6.1 58 89-146 17-81 (84)
333 3rui_B Autophagy-related prote 61.8 28 0.00097 23.5 6.2 74 74-147 28-111 (118)
334 3au4_A Myosin-X; protein-prote 60.4 18 0.00061 31.4 6.3 44 2-45 218-263 (555)
335 3m95_A Autophagy related prote 60.2 35 0.0012 23.3 6.5 74 74-147 34-117 (125)
336 2v1y_A Phosphatidylinositol-4, 59.9 19 0.00066 23.9 5.0 32 3-34 22-53 (108)
337 2kmc_A Fermitin family homolog 59.7 34 0.0011 22.4 8.7 71 77-147 20-98 (102)
338 3onh_A Ubiquitin-activating en 59.7 23 0.00078 24.3 5.4 50 172-222 19-77 (127)
339 1j0g_A Hypothetical protein 18 59.6 29 0.001 21.6 6.5 63 89-151 26-89 (92)
340 3h9d_A ATG8, microtubule-assoc 59.6 36 0.0012 23.1 6.4 74 74-147 29-112 (119)
341 1v8c_A MOAD related protein; r 59.6 9.9 0.00034 27.5 3.9 62 166-229 17-88 (168)
342 2v1y_A Phosphatidylinositol-4, 59.4 14 0.00048 24.6 4.2 64 75-138 18-95 (108)
343 2hj1_A Hypothetical protein; s 59.4 27 0.00092 22.7 5.6 55 163-222 26-83 (97)
344 3onh_A Ubiquitin-activating en 59.4 29 0.001 23.8 5.9 51 96-147 19-78 (127)
345 2hj1_A Hypothetical protein; s 58.4 31 0.001 22.4 5.7 57 10-71 25-84 (97)
346 1pqs_A Cell division control p 58.2 10 0.00035 23.6 3.2 27 11-37 2-28 (77)
347 4dxe_H ACP, acyl carrier prote 57.8 1.9 6.4E-05 28.5 -0.3 82 12-109 17-99 (101)
348 3au4_A Myosin-X; protein-prote 57.6 33 0.0011 29.7 7.5 60 75-134 215-280 (555)
349 4gmv_A RAS-associated and plec 57.5 27 0.00092 27.6 6.3 60 76-135 31-97 (281)
350 1eo6_A GATE-16, golgi-associat 57.3 39 0.0013 22.7 6.4 74 75-148 27-110 (117)
351 3u52_E Phenol hydroxylase comp 56.0 35 0.0012 23.0 5.7 60 87-146 38-107 (119)
352 2lgx_A Fermitin family homolog 55.5 28 0.00097 23.1 5.1 60 87-146 36-100 (112)
353 3lxf_A Ferredoxin; iron, iron- 55.5 23 0.0008 23.1 4.9 27 2-28 2-28 (104)
354 3r8s_T 50S ribosomal protein L 54.7 21 0.00072 23.0 4.4 40 162-201 27-67 (93)
355 3h9d_A ATG8, microtubule-assoc 54.7 27 0.00092 23.7 5.1 44 15-58 52-96 (119)
356 3hk0_A Growth factor receptor- 53.7 52 0.0018 25.5 7.3 59 77-135 9-74 (256)
357 2zjd_A Microtubule-associated 53.6 41 0.0014 23.1 6.0 45 14-58 56-102 (130)
358 1af8_A Actinorhodin polyketide 53.6 15 0.00053 22.6 3.7 79 20-110 4-82 (86)
359 3m95_A Autophagy related prote 53.3 30 0.001 23.7 5.2 45 14-58 56-101 (125)
360 2eel_A Cell death activator CI 52.9 26 0.00089 22.5 4.5 50 21-73 28-79 (91)
361 3ge3_C Toluene-4-monooxygenase 52.1 42 0.0014 21.1 6.2 59 12-70 16-81 (84)
362 1c1y_B Proto-onkogene serine/t 51.7 37 0.0013 21.1 4.9 42 155-196 4-45 (77)
363 3pvl_A Myosin VIIA isoform 1; 51.4 22 0.00077 31.7 5.5 45 1-45 264-309 (655)
364 2inc_C TOUB protein; DIIRON, 4 51.4 43 0.0015 21.0 7.2 59 12-70 14-80 (83)
365 2l52_A Methanosarcina acetivor 50.0 42 0.0014 21.6 5.5 60 167-228 23-99 (99)
366 4gdk_A Ubiquitin-like protein 49.8 34 0.0012 21.9 4.8 45 13-57 22-68 (91)
367 1pqs_A Cell division control p 49.7 17 0.00057 22.6 3.2 36 88-123 3-43 (77)
368 1wxm_A A-RAF proto-oncogene se 49.6 37 0.0013 21.5 4.8 44 154-197 9-52 (86)
369 1f2r_I Inhibitor of caspase-ac 49.4 37 0.0013 22.2 4.9 50 21-73 37-90 (100)
370 2bt6_A Adrenodoxin 1; rutheniu 48.0 37 0.0013 22.1 5.0 27 2-28 8-34 (108)
371 2j58_A WZA, outer membrane lip 47.2 1.1E+02 0.0039 24.8 15.4 113 65-182 139-265 (359)
372 1n62_A Carbon monoxide dehydro 47.2 20 0.00069 25.9 3.8 34 2-36 5-38 (166)
373 3tca_A Amyloid beta A4 precurs 47.0 45 0.0015 25.8 6.2 39 3-41 37-75 (291)
374 2dhz_A RAP guanine nucleotide 46.4 39 0.0013 22.9 4.8 64 9-72 18-92 (120)
375 2zkr_s 60S ribosomal protein L 45.9 23 0.00077 25.3 3.7 32 10-41 93-124 (156)
376 2lgx_A Fermitin family homolog 45.7 17 0.0006 24.1 2.9 70 2-72 28-102 (112)
377 1ffv_A CUTS, iron-sulfur prote 44.7 23 0.0008 25.4 3.8 35 2-37 5-39 (163)
378 3tve_T 50S ribosomal protein L 44.3 27 0.00094 22.5 3.7 39 162-200 21-60 (92)
379 4a17_R RPL23A, 60S ribosomal p 44.0 27 0.00091 24.7 3.8 33 10-42 87-119 (150)
380 2r2q_A Gamma-aminobutyric acid 43.9 56 0.0019 21.6 5.3 45 14-58 47-92 (110)
381 3u5e_X 60S ribosomal protein L 43.7 25 0.00087 24.6 3.7 31 11-41 80-110 (142)
382 2inc_C TOUB protein; DIIRON, 4 43.1 60 0.002 20.4 7.2 60 165-224 15-82 (83)
383 1lfd_A Ralgds; RAL, effector i 43.0 62 0.0021 20.5 6.2 39 1-39 6-45 (87)
384 2y5c_A Adrenodoxin-like protei 42.1 49 0.0017 21.6 4.9 27 2-28 7-33 (109)
385 1t3q_A Quinoline 2-oxidoreduct 41.8 28 0.00097 25.0 3.9 29 1-30 10-38 (168)
386 2eel_A Cell death activator CI 41.7 34 0.0012 22.0 3.8 49 173-224 28-78 (91)
387 3u52_E Phenol hydroxylase comp 41.6 79 0.0027 21.3 6.1 59 164-222 39-107 (119)
388 3hrd_D Nicotinate dehydrogenas 41.3 30 0.001 24.8 3.9 27 2-29 5-31 (160)
389 4gmv_A RAS-associated and plec 41.2 59 0.002 25.6 5.9 67 3-69 34-111 (281)
390 3pvl_A Myosin VIIA isoform 1; 40.9 38 0.0013 30.2 5.2 47 75-121 262-309 (655)
391 1wxm_A A-RAF proto-oncogene se 40.7 68 0.0023 20.3 5.4 43 78-120 9-51 (86)
392 1rm6_C 4-hydroxybenzoyl-COA re 40.7 41 0.0014 24.0 4.6 34 3-37 5-38 (161)
393 3tca_A Amyloid beta A4 precurs 39.7 62 0.0021 24.9 6.0 41 77-117 35-75 (291)
394 1eo6_A GATE-16, golgi-associat 39.5 70 0.0024 21.4 5.3 45 14-58 48-93 (117)
395 1c1y_B Proto-onkogene serine/t 39.5 67 0.0023 19.9 5.4 42 79-120 4-45 (77)
396 1vq8_S 50S ribosomal protein L 39.3 22 0.00076 22.5 2.6 35 162-196 22-56 (85)
397 2wlb_A ETP1-FD, electron trans 38.9 75 0.0026 20.3 5.5 27 2-28 5-31 (103)
398 3rui_B Autophagy-related prote 37.8 92 0.0031 21.0 5.7 44 14-57 50-94 (118)
399 1vku_A Acyl carrier protein; T 37.4 6.1 0.00021 25.9 -0.3 75 20-110 16-90 (100)
400 1xlq_A Putidaredoxin, PDX; [2F 37.0 66 0.0023 20.7 4.9 27 2-28 2-28 (106)
401 3bbo_V Ribosomal protein L23; 36.8 18 0.00063 26.6 2.1 32 10-41 131-162 (198)
402 2cu1_A Mitogen-activated prote 36.8 87 0.003 20.4 5.9 42 3-47 9-51 (103)
403 2lte_A Specialized acyl carrie 43.0 7.3 0.00025 25.6 0.0 73 22-110 27-99 (103)
404 1uiz_A MIF, macrophage migrati 36.5 86 0.0029 20.4 5.5 87 19-124 16-102 (115)
405 2xcz_A Possible ATLS1-like lig 36.3 81 0.0028 20.5 5.3 83 23-124 20-102 (115)
406 3iz5_X 60S ribosomal protein L 36.2 29 0.001 24.6 3.0 32 11-42 90-121 (152)
407 3ny5_A Serine/threonine-protei 36.1 83 0.0028 20.3 4.9 45 154-198 15-59 (96)
408 3hvz_A Uncharacterized protein 35.3 46 0.0016 20.5 3.6 60 2-70 7-66 (78)
409 4gdk_A Ubiquitin-like protein 34.5 90 0.0031 19.9 6.1 58 89-146 22-83 (91)
410 2zjr_Q 50S ribosomal protein L 34.1 35 0.0012 22.1 3.0 37 163-199 23-60 (95)
411 2cnr_A FAS, ACP, acyl carrier 33.8 7.1 0.00024 23.9 -0.4 74 20-109 6-80 (82)
412 1uwm_A Ferredoxin VI, FDVI; el 33.5 59 0.002 21.0 4.2 27 2-28 2-28 (106)
413 3j21_T 50S ribosomal protein L 33.4 34 0.0012 21.7 2.8 35 162-196 23-57 (86)
414 2l05_A Serine/threonine-protei 33.3 98 0.0033 20.0 5.6 44 77-120 18-61 (95)
415 2os5_A Acemif; macrophage migr 32.4 82 0.0028 20.7 4.9 87 19-124 16-102 (119)
416 4a6q_A Histone deacetylase com 31.9 1.3E+02 0.0045 21.0 7.4 64 12-75 55-141 (143)
417 3e19_A FEOA; transcriptional r 31.4 61 0.0021 19.5 3.8 29 130-159 29-57 (77)
418 3hui_A Ferredoxin; cytochrome 31.3 66 0.0023 21.8 4.2 27 2-28 23-49 (126)
419 4dxa_B KREV interaction trappe 31.0 58 0.002 25.9 4.5 35 1-39 6-42 (322)
420 3ejb_A Acyl carrier protein; p 30.2 8.3 0.00028 24.9 -0.6 80 14-109 15-95 (97)
421 2cu1_A Mitogen-activated prote 30.1 1.2E+02 0.004 19.8 5.9 45 77-125 9-53 (103)
422 1ibx_B Chimera of IGG binding 29.8 42 0.0014 23.5 2.9 50 21-73 82-135 (145)
423 1rax_A Protein (RA-domain of R 29.4 68 0.0023 21.4 3.8 38 1-38 31-69 (115)
424 3hk0_A Growth factor receptor- 29.0 93 0.0032 24.0 5.2 55 3-57 11-72 (256)
425 3cjl_A Domain of unknown funct 28.9 75 0.0026 20.2 3.8 37 2-38 7-45 (88)
426 1awd_A Ferredoxin; electron tr 28.0 1.1E+02 0.0039 19.0 6.7 27 2-29 2-28 (94)
427 1frr_A Ferredoxin I; electron 27.7 1.1E+02 0.0039 19.0 6.6 26 2-28 3-28 (95)
428 2wkb_A Macrophage migration in 26.8 1.4E+02 0.0048 19.8 6.8 82 23-124 20-102 (125)
429 2kjs_A Putative acyl carrier p 26.6 14 0.0005 23.3 0.1 74 21-110 2-76 (87)
430 2ava_A ACP I, acyl carrier pro 26.1 36 0.0012 20.6 2.0 74 22-110 5-78 (82)
431 2lx9_A Ferrous iron transport 25.2 53 0.0018 20.4 2.6 23 206-228 24-46 (83)
432 2eki_A DRG 1, developmentally- 24.9 1E+02 0.0035 19.8 3.9 58 166-224 28-87 (93)
433 2al6_A Focal adhesion kinase 1 24.7 57 0.0019 26.7 3.4 55 81-135 12-77 (375)
434 2qwv_A UPF0217 protein VC_A105 24.6 1.7E+02 0.0057 21.9 5.6 65 135-199 50-115 (208)
435 3ny5_A Serine/threonine-protei 24.4 1.5E+02 0.0051 19.2 5.4 44 78-121 15-58 (96)
436 1w9e_A Syntenin 1; cell adhesi 24.1 83 0.0028 22.0 3.9 41 32-72 41-84 (166)
437 1hfo_A Migration inhibitory fa 24.1 1.5E+02 0.0051 19.1 5.5 84 22-124 18-101 (113)
438 3gzm_A Acyl carrier protein; h 24.1 10 0.00035 23.3 -1.0 74 21-110 5-79 (81)
439 2kwl_A ACP, acyl carrier prote 23.9 13 0.00043 22.9 -0.6 74 21-110 9-83 (84)
440 1b9r_A Protein (terpredoxin); 23.8 60 0.002 20.9 2.8 27 2-28 2-28 (105)
441 2ktr_A Sequestosome-1; autopha 23.5 1.5E+02 0.005 20.0 4.7 26 21-46 57-83 (117)
442 2k5l_A FEOA; structure, NESG, 22.9 1.2E+02 0.0043 18.4 4.1 29 130-158 26-54 (81)
443 4dxa_B KREV interaction trappe 22.6 90 0.0031 24.7 4.2 43 75-121 4-51 (322)
444 2nvu_B Maltose binding protein 22.6 1.5E+02 0.0052 26.9 6.1 59 164-222 713-789 (805)
445 1jq4_A Methane monooxygenase c 22.4 96 0.0033 19.5 3.6 28 2-29 6-33 (98)
446 2al6_A Focal adhesion kinase 1 22.4 67 0.0023 26.2 3.4 33 5-37 12-48 (375)
447 2qcp_X Cation efflux system pr 22.1 51 0.0018 20.4 2.1 26 202-229 45-70 (80)
448 1l0i_A Acyl carrier protein; a 21.9 18 0.00062 21.7 -0.1 73 21-109 3-76 (78)
449 1wfy_A Regulator of G-protein 21.8 1.3E+02 0.0043 19.8 3.9 52 84-135 25-78 (104)
450 2qnw_A Acyl carrier protein; m 21.7 13 0.00043 22.9 -0.9 73 21-109 7-80 (82)
451 1or5_A Acyl carrier protein; A 21.5 11 0.00039 23.1 -1.2 75 20-109 3-79 (83)
452 2h3j_A Hypothetical protein PA 20.7 54 0.0018 19.5 2.0 21 206-226 25-45 (75)
453 2k4y_A FEOA-like protein; GFT 20.7 1.4E+02 0.0047 18.4 4.0 29 130-158 29-57 (86)
454 1a70_A Ferredoxin; iron-sulfur 20.6 1.7E+02 0.0057 18.4 4.9 26 3-29 5-30 (97)
455 1rrb_A RAF-1 RBD, RAF proto-on 20.5 1.9E+02 0.0066 19.0 5.8 43 78-120 20-62 (107)
456 2vb2_X Copper protein, cation 20.5 57 0.002 20.6 2.1 26 202-229 53-78 (88)
457 3f5r_A FACT complex subunit PO 20.4 86 0.003 23.1 3.2 49 148-196 80-128 (191)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=1.2e-38 Score=238.58 Aligned_cols=153 Identities=34% Similarity=0.497 Sum_probs=147.0
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE-e-ccccccCCCcccccccccccceeeeee-ecCce
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 77 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~-~g~~l~d~~~l~~~~i~~~~~i~l~~~-~~~~~ 77 (230)
|+|+|++++|+++++++++++||.+||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++++.++ +++.|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 79999999999999999999999999999999999999999999 9 799999999999999999999999999 58899
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecce
Q 026957 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 153 (230)
+|+|+..+|+.+.+++++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.+++++|-
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998873
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=238.24 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=145.1
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeE
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++++|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+++.++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
|+..+|+.+.+++++++||++||++|+.++|+|++.|+|+|+|+.|+|+.+|++|++++|++|++.+++++|
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998875
No 3
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=1.4e-37 Score=232.80 Aligned_cols=153 Identities=34% Similarity=0.505 Sum_probs=146.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-E-cCcccCCCcchhhhccccCCceEEEEE-eecce
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 153 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~-~g~~L~d~~~L~~~~i~~~~~i~l~~~-~~~~~ 153 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++|+++++ ++++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 78999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred eEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
.++++..+|+++.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++||+
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=234.15 Aligned_cols=155 Identities=94% Similarity=1.292 Sum_probs=146.6
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecce
Q 026957 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 153 (230)
...|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++..+++
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
.++++..+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus 98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=1.2e-36 Score=226.07 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.2
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeE
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++.+|+.+++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++..+..+.+.|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 81 v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998876
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=1.1e-35 Score=220.92 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=147.8
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecceeEE
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|+++++..+..+++.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 157 v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
++..+|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+++|++|++++|++|++++|++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.3e-21 Score=137.30 Aligned_cols=101 Identities=74% Similarity=0.991 Sum_probs=94.2
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeE
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
.+|+|++++|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++..++.++..++
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~ 89 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGG 89 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceee
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred EE---eccCeeEeeecCCCChHHH
Q 026957 81 VK---TLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 81 v~---~~~g~~~~i~v~~~~tV~~ 101 (230)
++ ...|+++.+++.+++||++
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 90 AADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp SCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ccccccccCceEEEEeccccccCC
Confidence 87 4568888999998888863
No 8
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=122.55 Aligned_cols=74 Identities=35% Similarity=0.574 Sum_probs=71.6
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++..
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998753
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.82 E-value=2.6e-20 Score=123.45 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.5
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|+|+|++..|+.+.++++|++||++||++|+++.|+||++|+|.|+|+.|+|+.||++|+|.++++++|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999985
No 10
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=2.1e-20 Score=124.02 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.8
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccc-ccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~-l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.|+|++++|+++++++++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|+|.++++|++.++|
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999999999999999999 999999999999999999998764
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.81 E-value=5.4e-20 Score=123.38 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.2
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCc
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|+|+|++++|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..++
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg 76 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC--
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887543
No 12
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.81 E-value=9.5e-20 Score=124.75 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=74.5
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeE
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.++++|++..+..++..+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred EEeccCeeEee
Q 026957 81 VKTLTGKTITL 91 (230)
Q Consensus 81 v~~~~g~~~~i 91 (230)
.++.+|+.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 88887765443
No 13
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=117.99 Aligned_cols=77 Identities=35% Similarity=0.569 Sum_probs=74.5
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~ 227 (230)
+.|.++|+..+|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999987
No 14
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=6.6e-20 Score=121.88 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=70.1
Q ss_pred CEEEEEcCCCcEEEEEec--CCCcHHHHHHHh-hhhhCCCCCceEEEeccccccCCCccccccc-ccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~--~~~tv~~lK~~i-~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i-~~~~~i~l~~~~~ 74 (230)
|+|+||++.|++++++++ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+++++++..++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 899999999999998766 999999999999 9999999999999999999999999999999 7999999998873
No 15
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.79 E-value=1.6e-19 Score=120.99 Aligned_cols=77 Identities=56% Similarity=0.940 Sum_probs=72.1
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
|.++|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++||.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999995
No 16
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.2e-20 Score=132.46 Aligned_cols=104 Identities=73% Similarity=0.983 Sum_probs=96.3
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecce
Q 026957 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.+.++|+++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++..++++|+
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEE---eccCceeEEEeeccchHHH
Q 026957 154 QIFVK---TLTGKTITLEVESSDTIDN 177 (230)
Q Consensus 154 ~i~v~---~~~~~~~~~~v~~~~tv~~ 177 (230)
.++++ ...|+++++++.+++||..
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeeccccccccCceEEEEeccccccCC
Confidence 88877 4568889999998888753
No 17
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.79 E-value=3.4e-19 Score=116.16 Aligned_cols=74 Identities=55% Similarity=0.918 Sum_probs=71.5
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++..
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988764
No 18
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=119.51 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=71.8
Q ss_pred ccccCCceEEEEEeecceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCC
Q 026957 136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 136 ~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~ 215 (230)
|+.+++++++.++....|.++++..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+ +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 456788899988888889999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCEEEEEEE
Q 026957 216 ESTLHLVLR 224 (230)
Q Consensus 216 ~~~i~~~~~ 224 (230)
|++|+++.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999876
No 19
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.79 E-value=2.7e-19 Score=120.81 Aligned_cols=73 Identities=92% Similarity=1.257 Sum_probs=71.0
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++.++.
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998865
No 20
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=120.62 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=71.4
Q ss_pred ccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhcccc
Q 026957 60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 60 ~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~ 139 (230)
|..+++.+++.++.+..|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++ +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 455678889988888899999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCceEEEEE
Q 026957 140 ESTLHLVLR 148 (230)
Q Consensus 140 ~~~i~l~~~ 148 (230)
|++||++.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999864
No 21
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2.3e-19 Score=120.25 Aligned_cols=80 Identities=84% Similarity=1.240 Sum_probs=70.1
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~~ 230 (230)
.||.++++..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+++|++|++++|++|++++|++||++
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~ 87 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL 87 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999964
No 22
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=1.4e-19 Score=122.33 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=68.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|+|++..|+.+.+++.|++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 23
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2.9e-19 Score=117.15 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.2
Q ss_pred CEEEEEcCCCcEE-EEE-ecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+.+ +++ +++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7999999999985 999 999999999999999999999999999999999999999999999999999998875
No 24
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=3.9e-19 Score=119.16 Aligned_cols=74 Identities=86% Similarity=1.247 Sum_probs=69.9
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++++|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.++++|++.+++.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~ 83 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 83 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC---
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988764
No 25
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.79 E-value=3.9e-19 Score=119.76 Aligned_cols=73 Identities=34% Similarity=0.601 Sum_probs=70.6
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+| ++++||++++..
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~ 78 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAP 78 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCC
Confidence 7899999999999999999999999999999999999999999999999999999999999 899999998764
No 26
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.79 E-value=3.1e-19 Score=118.31 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=70.2
Q ss_pred eeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEE
Q 026957 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 70 ~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (230)
+...++.|+|+|+...|+++.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++.
T Consensus 15 ~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 15 VPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp -----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred cCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 34446779999999999999999999999999999999999999999999999999999999999999999999885
No 27
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.79 E-value=3.5e-19 Score=119.48 Aligned_cols=74 Identities=57% Similarity=0.942 Sum_probs=71.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998764
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.78 E-value=3.2e-19 Score=119.58 Aligned_cols=74 Identities=35% Similarity=0.574 Sum_probs=70.2
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++..+..
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999988764
No 29
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.78 E-value=6.6e-19 Score=114.79 Aligned_cols=74 Identities=95% Similarity=1.296 Sum_probs=71.6
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLR 74 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 30
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.1e-19 Score=121.01 Aligned_cols=74 Identities=97% Similarity=1.310 Sum_probs=71.8
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+.++|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 96 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCS
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 31
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=5.6e-19 Score=117.72 Aligned_cols=74 Identities=80% Similarity=1.139 Sum_probs=71.8
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~ 77 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLR 77 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 32
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.78 E-value=8.7e-19 Score=119.52 Aligned_cols=78 Identities=92% Similarity=1.244 Sum_probs=73.0
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCcee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 78 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~ 78 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++..++..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765544
No 33
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.78 E-value=5.2e-19 Score=118.65 Aligned_cols=78 Identities=58% Similarity=0.980 Sum_probs=75.3
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
..|.++|+..+|+++.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++||
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 458899999999999999999999999999999999999999999999999999999999999999999999999998
No 34
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.77 E-value=1e-18 Score=113.91 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=71.6
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
|.++++..+|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++|++..|++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 5788998899999999999999999999999999999999999999999999999999999999999999999998
No 35
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=115.04 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.5
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++.+++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998765
No 36
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.77 E-value=5.7e-19 Score=116.02 Aligned_cols=74 Identities=16% Similarity=0.401 Sum_probs=71.4
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.++++|++.++..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998754
No 37
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.77 E-value=1.1e-18 Score=119.04 Aligned_cols=78 Identities=94% Similarity=1.270 Sum_probs=73.5
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
||.++|+..+|+++.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++||.
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 588999999999999999999999999999999999999999999999999999999999999999999999999995
No 38
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=9.3e-19 Score=116.62 Aligned_cols=78 Identities=78% Similarity=1.131 Sum_probs=72.2
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
.|.++++..+++++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++|++||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999999985
No 39
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.1e-18 Score=116.18 Aligned_cols=74 Identities=92% Similarity=1.229 Sum_probs=71.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998764
No 40
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.1e-18 Score=116.85 Aligned_cols=75 Identities=33% Similarity=0.510 Sum_probs=71.9
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecC
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.++++|++.++..+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987643
No 41
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=9.1e-19 Score=119.73 Aligned_cols=78 Identities=95% Similarity=1.288 Sum_probs=74.9
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
..|.++|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 348899999999999999999999999999999999999999999999999999999999999999999999999998
No 42
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.77 E-value=1.9e-18 Score=112.55 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.4
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
|.++++..+|+.+.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++++|++|++..|++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 5788998899999999999999999999999999999999999999999999999999999999999999999998
No 43
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.77 E-value=1.1e-18 Score=114.69 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.1
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
|.++++..+|+++.+++++++||.+||++++++.|+|+++|+|+|+|+.|+|+++|++|++++|++|++++|++||
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999998
No 44
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.77 E-value=1.2e-18 Score=118.04 Aligned_cols=74 Identities=28% Similarity=0.472 Sum_probs=70.4
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-CcccccccccccceeeeeeecC
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+| ++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|+|.++++|++++++.+
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g 90 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN 90 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence 6899999988 999999999999999999999999999999999999999999 9999999999999999988753
No 45
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.4e-18 Score=116.94 Aligned_cols=73 Identities=30% Similarity=0.597 Sum_probs=70.5
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+.+.+++++++||.+||++|+.. +|+|+++|+|+|+|+.|+|+.+|++|||.++++|++.++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 899999999999999999999999999999999 8999999999999999999999999999999999998765
No 46
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2e-18 Score=115.51 Aligned_cols=79 Identities=34% Similarity=0.538 Sum_probs=76.0
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
+.|.++|+..+++++.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+++|++|++++|++|+++.|++||.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 5688999998999999999999999999999999999999999999999999999999999999999999999999996
No 47
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=7.1e-19 Score=121.86 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.4
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++++|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|+++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998753
No 48
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.76 E-value=1.8e-18 Score=129.46 Aligned_cols=99 Identities=77% Similarity=1.028 Sum_probs=83.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeE
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.++..++..-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999987765555
Q ss_pred EEec-cC--eeEeeecCCCChH
Q 026957 81 VKTL-TG--KTITLEVESSDTI 99 (230)
Q Consensus 81 v~~~-~g--~~~~i~v~~~~tV 99 (230)
|+.. .| ..-.+.+.++.++
T Consensus 81 vkfs~~Gd~g~~~i~l~~~~~~ 102 (169)
T 3l0w_B 81 IKFVADGDIGSGSVIIKPFVDM 102 (169)
T ss_dssp EEEEEECSSCEEEEEECCBCCS
T ss_pred ccccccCcccceeEEEecCCCC
Confidence 4432 22 2345666665555
No 49
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.76 E-value=2e-18 Score=115.04 Aligned_cols=74 Identities=30% Similarity=0.531 Sum_probs=69.8
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+.+.+++++++||.+||++|++. +|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++..+.+
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 89999999999999999999999999999999999987653
No 50
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2e-18 Score=116.01 Aligned_cols=75 Identities=36% Similarity=0.606 Sum_probs=71.3
Q ss_pred CEEEEEcCCC-cEEEE-EecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecC
Q 026957 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g-~~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|++.+| +++.+ ++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.+++.+
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7899999999 79999 599999999999999999999999999999999999999999999999999999988753
No 51
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=116.67 Aligned_cols=79 Identities=35% Similarity=0.566 Sum_probs=71.4
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
..|.++|+..+|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|+++.+++||.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4588999998999999999999999999999999999999999999999999999999999999999999999999984
No 52
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.76 E-value=1.3e-18 Score=118.10 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=68.2
Q ss_pred CEEEEEcCCCcEEEE--EecCCCcHHHHHHHh-hhhhCCCCCceEEEeccccccCCCccccccc-ccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~--~v~~~~tv~~lK~~i-~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i-~~~~~i~l~~~~ 73 (230)
|+|+||+++|+.|++ ++++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .++++|+++++.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 556999999999999 9999999999999999999999999999999 999999998764
No 53
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.3e-18 Score=114.72 Aligned_cols=78 Identities=90% Similarity=1.216 Sum_probs=74.5
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
.|.++++..+++++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+++++++|++++|++||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999999985
No 54
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.75 E-value=2.6e-18 Score=117.57 Aligned_cols=89 Identities=82% Similarity=1.101 Sum_probs=73.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecceeEE
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+++|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..+|..++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred EEeccCcee
Q 026957 157 VKTLTGKTI 165 (230)
Q Consensus 157 v~~~~~~~~ 165 (230)
.+..+++.-
T Consensus 81 ~~~v~~~~~ 89 (98)
T 1yx5_B 81 SSSVDKLAA 89 (98)
T ss_dssp ---------
T ss_pred cccCCCchh
Confidence 887776543
No 55
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.75 E-value=2.6e-18 Score=120.03 Aligned_cols=74 Identities=96% Similarity=1.299 Sum_probs=71.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+.++|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998764
No 56
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.75 E-value=1.8e-18 Score=118.00 Aligned_cols=74 Identities=16% Similarity=0.401 Sum_probs=71.5
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.++|.+++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998764
No 57
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.75 E-value=3.2e-18 Score=111.86 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=68.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++ +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++..++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6899999 99999999999999999999999999999999999999999999999999999999999997653
No 58
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.75 E-value=2.5e-18 Score=117.26 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=75.7
Q ss_pred ecceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
...|.|+|+..+|+++.+++++++||.+||++|+++.|+|+++|+|+|+|+.|.|+.+|++|+|++|++|++++|++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 3458899999999999999999999999999999999999999999999999999999999999999999999999998
No 59
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.61 E-value=6.9e-20 Score=119.55 Aligned_cols=74 Identities=34% Similarity=0.600 Sum_probs=71.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 60
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=116.13 Aligned_cols=72 Identities=35% Similarity=0.577 Sum_probs=69.3
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++ |+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++.
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 7899998 89999999999999999999999999999999999999999999999999999999999998764
No 61
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=120.15 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=74.0
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
..|.++|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+++|++|++++|++|++++|++||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 358899998889999999999999999999999999999999999999999999999999999999999999999998
No 62
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.75 E-value=2e-18 Score=130.63 Aligned_cols=82 Identities=91% Similarity=1.230 Sum_probs=78.0
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeE
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~ 80 (230)
|+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++..++..++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999987776666
Q ss_pred EE
Q 026957 81 VK 82 (230)
Q Consensus 81 v~ 82 (230)
|+
T Consensus 186 vk 187 (189)
T 3q3f_A 186 TK 187 (189)
T ss_dssp CC
T ss_pred Ee
Confidence 54
No 63
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.75 E-value=5.1e-18 Score=118.52 Aligned_cols=77 Identities=95% Similarity=1.307 Sum_probs=73.8
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
.|.++|+..+|+.+.+++++++||.+||++|++++++|+++|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999998
No 64
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.75 E-value=3.3e-18 Score=118.37 Aligned_cols=74 Identities=30% Similarity=0.443 Sum_probs=70.4
Q ss_pred CEEEEEcCCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCccccccccc-------ccceeeeee
Q 026957 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~-------~~~i~l~~~ 72 (230)
|.||++...++ ++.+++.+++||.+||++|+...||||++|+|+|+|+.|+|++||++|||.+ ++++||.++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 88999999887 8899999999999999999999999999999999999999999999999999 999999987
Q ss_pred ec
Q 026957 73 LR 74 (230)
Q Consensus 73 ~~ 74 (230)
..
T Consensus 81 ~~ 82 (118)
T 4ajy_B 81 AD 82 (118)
T ss_dssp CS
T ss_pred cC
Confidence 63
No 65
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=4.7e-18 Score=115.10 Aligned_cols=78 Identities=27% Similarity=0.434 Sum_probs=73.7
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCC-CcccccCCCCCCEEEEEEEecCCC
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~-~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
..|.++|+..++ ++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ ++|++|+|++|++|++++|++||+
T Consensus 14 ~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~ 92 (94)
T 2kan_A 14 RKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRA 92 (94)
T ss_dssp CCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSC
T ss_pred CCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCC
Confidence 457889998777 899999999999999999999999999999999999999999 999999999999999999999996
No 66
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=8.3e-18 Score=112.98 Aligned_cols=80 Identities=36% Similarity=0.610 Sum_probs=75.2
Q ss_pred cceeEEEEeccC-ceeEE-EeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 151 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~-~~~~~-~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
..|.++|+..+| +++.+ ++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 458899999888 69999 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026957 229 DF 230 (230)
Q Consensus 229 ~~ 230 (230)
..
T Consensus 86 ~~ 87 (89)
T 1wy8_A 86 PS 87 (89)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 67
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=5.7e-18 Score=112.24 Aligned_cols=74 Identities=32% Similarity=0.472 Sum_probs=71.0
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcc-cCCCcchhhhccccCCceEEEEE
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~-L~d~~~L~~~~i~~~~~i~l~~~ 148 (230)
..|+|+++...|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|++.+|++|+++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 458999999999999999999999999999999999999999999999999 99999999999999999999875
No 68
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.74 E-value=4.2e-18 Score=118.36 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=68.0
Q ss_pred CEEEEEcCCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccc-------cccceeeeee
Q 026957 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~-------~~~~i~l~~~ 72 (230)
|++|++...|+ ++.+++.+++||.+||++|+..+|||+++|+|+|+|+.|+|+.+|++|||. .++++||.++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 88899888886 599999999999999999999999999999999999999999999999999 7899999876
No 69
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=115.67 Aligned_cols=77 Identities=38% Similarity=0.647 Sum_probs=71.5
Q ss_pred ecceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
...|.++|+. |+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4457888886 7999999999999999999999999999999999999999999999999999999999999999998
No 70
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.73 E-value=9.8e-18 Score=115.99 Aligned_cols=77 Identities=30% Similarity=0.458 Sum_probs=69.9
Q ss_pred eeEEEEeccCc-eeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCC-------CCEEEEEEE
Q 026957 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~-------~~~i~~~~~ 224 (230)
|.++++...++ ++.+++++++||.+||++|+.+.|+|+++|+|+|+|+.|+|++||++|||++ +++|++++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 45666666655 7899999999999999999999999999999999999999999999999999 999999999
Q ss_pred ecCCCC
Q 026957 225 LRGGDF 230 (230)
Q Consensus 225 ~~~g~~ 230 (230)
. +|.|
T Consensus 81 ~-~~~f 85 (118)
T 4ajy_B 81 A-DDTF 85 (118)
T ss_dssp C-SSCC
T ss_pred c-CCCc
Confidence 7 6655
No 71
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=9.3e-18 Score=113.19 Aligned_cols=76 Identities=91% Similarity=1.259 Sum_probs=72.6
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 226 (230)
..|.++|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 4588999999999999999999999999999999999999999999999999999999999999999999999875
No 72
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.73 E-value=6.8e-18 Score=117.31 Aligned_cols=77 Identities=29% Similarity=0.450 Sum_probs=70.4
Q ss_pred eeEEEEeccCc-eeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCC-------CCCEEEEEEE
Q 026957 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~-------~~~~i~~~~~ 224 (230)
|.++++...++ ++.+++++++||.+||++|+.+.|+|+++|+|+|+|+.|+|+++|++|||+ ++++|++++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 45677766665 699999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ecCCCC
Q 026957 225 LRGGDF 230 (230)
Q Consensus 225 ~~~g~~ 230 (230)
.||.|
T Consensus 81 -~~g~f 85 (118)
T 2fnj_B 81 -ADDTF 85 (118)
T ss_dssp -SSSCB
T ss_pred -CCCce
Confidence 78765
No 73
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=6.3e-18 Score=117.16 Aligned_cols=74 Identities=28% Similarity=0.525 Sum_probs=71.1
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|+.+.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++||++.+..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988653
No 74
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=116.17 Aligned_cols=93 Identities=80% Similarity=1.042 Sum_probs=82.3
Q ss_pred ccccccceeeeeee--------cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcc
Q 026957 60 NIQKESTLHLVLRL--------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 131 (230)
Q Consensus 60 ~i~~~~~i~l~~~~--------~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~ 131 (230)
++.+++++.+...+ ...|+|+|+..+|+.+.+++++++||++||++|++.+++|+++|+|+|+|+.|+|+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~t 90 (111)
T 2ojr_A 11 GWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 90 (111)
T ss_dssp SSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCB
T ss_pred ceecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCc
Confidence 45566666665543 2469999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccCCceEEEEEeecc
Q 026957 132 LADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 132 L~~~~i~~~~~i~l~~~~~~~ 152 (230)
|++|++.+|++|++.+++++|
T Consensus 91 L~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 91 LSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp TTTTTCCTTCEEEEEECCCC-
T ss_pred HHHcCCCCCCEEEEEEeCCCC
Confidence 999999999999999998875
No 75
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.8e-17 Score=108.51 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=70.8
Q ss_pred cceeEEEEeccCcee-EEE-eeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026957 151 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~-~~~-v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 225 (230)
++|.++|+..+|+++ .++ +++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++||+++|++|++++|+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 468899999999985 899 999999999999999999999999999999999999999999999999999999986
No 76
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.72 E-value=1.9e-17 Score=111.44 Aligned_cols=77 Identities=32% Similarity=0.560 Sum_probs=72.5
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
..|.++|+..+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|.+|+| +|++|++++|.+++
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 347899999999999999999999999999999999999999999999999999999999999 89999999998776
No 77
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=3.3e-18 Score=117.14 Aligned_cols=74 Identities=24% Similarity=0.405 Sum_probs=69.1
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC---------------ceEEEecccccc-CCCcccccccccc
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~---------------~q~l~~~g~~l~-d~~~l~~~~i~~~ 64 (230)
|+|+|++++|++++++|.+++||.+||++|++..|+|+. +|+|.|+|+.|. |+.+|++|||.++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 899999999999999999999999999999999999984 569999999996 6799999999999
Q ss_pred cceeeeeeec
Q 026957 65 STLHLVLRLR 74 (230)
Q Consensus 65 ~~i~l~~~~~ 74 (230)
+++|++.+..
T Consensus 88 ~~l~lv~~lr 97 (105)
T 1v2y_A 88 DEVSFIKKLG 97 (105)
T ss_dssp EEEEEEECSC
T ss_pred CEEEEEehhc
Confidence 9999998764
No 78
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.1e-17 Score=113.32 Aligned_cols=74 Identities=28% Similarity=0.464 Sum_probs=69.4
Q ss_pred CEEEEEcCCCc--EEEEEecCCCcHHHHHHHhhhhh--CCCCCceEEEeccccccCCCccccc--ccccccceeeeeeec
Q 026957 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~--gi~~~~q~l~~~g~~l~d~~~l~~~--~i~~~~~i~l~~~~~ 74 (230)
|.|+|++.+|+ .+.+++++++||.+||++|++.+ |+|+++|+|+|+|+.|+|+.+|++| +|.++++|||++++.
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 78999999998 67777889999999999999999 9999999999999999999999999 999999999998764
No 79
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1e-17 Score=114.67 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=69.9
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecC
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|+|+|+..+|+ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++..+
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 68999999886 799999999999999999999999999999999999999999999999999999999887643
No 80
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=113.81 Aligned_cols=73 Identities=33% Similarity=0.450 Sum_probs=69.9
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+.. |+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|++..+..
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 68999998 89999999999999999999999999999999999999999999999999999999999988764
No 81
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=8.8e-18 Score=114.47 Aligned_cols=73 Identities=27% Similarity=0.352 Sum_probs=70.2
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++||++++..
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSH 90 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 78999998 99999999999999999999999999999999999999999999999999999999999988764
No 82
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=1.2e-17 Score=112.85 Aligned_cols=71 Identities=23% Similarity=0.307 Sum_probs=68.6
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEE
Q 026957 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (230)
.|.|+|+++.|+++.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999875
No 83
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.9e-17 Score=111.06 Aligned_cols=74 Identities=23% Similarity=0.305 Sum_probs=67.4
Q ss_pred EEEEecc----CceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 155 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 155 i~v~~~~----~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
+.|+..+ ++++.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|++||++|+|++|++| ++++++|..
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~ 95 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSS 95 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCC
Confidence 4455555 6789999999999999999999999999999999999999999999999999999999 888888764
No 84
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.8e-17 Score=110.10 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=68.7
Q ss_pred eeeEEEeccCeeEeeecC--CCChHHHHHHHH-HhHhCCCCCCcEEEEcCcccCCCcchhhhcc-ccCCceEEEEEee
Q 026957 77 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~--~~~tV~~lK~~i-~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~~~ 150 (230)
|+|+|++.+|+++.++++ +++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|++..++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 789999999998888755 999999999999 9999999999999999999999999999999 7999999987653
No 85
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=107.32 Aligned_cols=75 Identities=40% Similarity=0.703 Sum_probs=71.0
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEe
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (230)
..|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 468999998899999999999999999999999999999999999999999999999999999999999998764
No 86
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.70 E-value=2.2e-17 Score=123.56 Aligned_cols=82 Identities=91% Similarity=1.223 Sum_probs=75.1
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecceeEE
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 156 (230)
|+|+|+..+|+.+.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++++|++||+.+++++|..-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999886544
Q ss_pred EE
Q 026957 157 VK 158 (230)
Q Consensus 157 v~ 158 (230)
++
T Consensus 81 vk 82 (169)
T 3l0w_B 81 IK 82 (169)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 87
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.70 E-value=2.5e-17 Score=115.13 Aligned_cols=74 Identities=32% Similarity=0.449 Sum_probs=70.7
Q ss_pred CEEEEEcC---CCcEEEEEecC-CCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~---~g~~~~~~v~~-~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++. +|+.+.+++++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++..
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~ 105 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRER 105 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSC
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcC
Confidence 68999998 89999999998 9999999999999999999999999999999999999999999999999998764
No 88
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.6e-17 Score=110.69 Aligned_cols=79 Identities=29% Similarity=0.490 Sum_probs=72.1
Q ss_pred cceeEEEEeccCc--eeEEEeeccchHHHHHHhhcccc--CCCCCceEEEEcCeecCCCCccccc--CCCCCCEEEEEEE
Q 026957 151 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~--~~~~~v~~~~tv~~lK~~i~~~~--~~~~~~~~l~~~g~~l~d~~~L~~~--~i~~~~~i~~~~~ 224 (230)
..|.++|+..+++ .+.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+++|++| +|+++++|+++++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 3478888988888 56666669999999999999998 9999999999999999999999999 9999999999999
Q ss_pred ecCCC
Q 026957 225 LRGGD 229 (230)
Q Consensus 225 ~~~g~ 229 (230)
++||.
T Consensus 86 ~~gg~ 90 (93)
T 1wgd_A 86 VKSGP 90 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99985
No 89
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=5e-17 Score=113.30 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=67.5
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhh------hhCC--CCCceEEEeccccccCCCcccccccccc--cceeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gi--~~~~q~l~~~g~~l~d~~~l~~~~i~~~--~~i~l~ 70 (230)
|.|+|+++.|++++++|++++||.+||++|++ .+|+ |+++|+|+|.|+.|+|+.+|++|+|..+ +++||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 6675 6999999999999999999999999755 578888
Q ss_pred eeec
Q 026957 71 LRLR 74 (230)
Q Consensus 71 ~~~~ 74 (230)
+++.
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 7763
No 90
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.70 E-value=1.1e-18 Score=125.00 Aligned_cols=74 Identities=97% Similarity=1.310 Sum_probs=0.0
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++.+|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++..
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~ 74 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (128)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 91
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=5.2e-17 Score=115.52 Aligned_cols=73 Identities=32% Similarity=0.418 Sum_probs=69.0
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++.+..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~ 105 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRD 105 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC--
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence 68999999 99999999999999999999999999999999999999999999999999999999999988764
No 92
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.70 E-value=3.4e-17 Score=114.44 Aligned_cols=80 Identities=33% Similarity=0.459 Sum_probs=74.8
Q ss_pred ecceeEEEEec---cCceeEEEeec-cchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026957 150 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 150 ~~~~~i~v~~~---~~~~~~~~v~~-~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 225 (230)
++.+.++|+.. +|+.+.+++++ ++||.+||++|++.+|+|+++|+|+|+|+.|+|+++|++|+|++|++|++++|+
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 35577888877 78999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 026957 226 RGGD 229 (230)
Q Consensus 226 ~~g~ 229 (230)
+||.
T Consensus 105 ~GGk 108 (111)
T 1we6_A 105 RSGP 108 (111)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 9995
No 93
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.3e-17 Score=114.33 Aligned_cols=92 Identities=32% Similarity=0.529 Sum_probs=67.0
Q ss_pred CcccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchh
Q 026957 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133 (230)
Q Consensus 54 ~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~ 133 (230)
...++|.|. ++..+.......+.|.|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|+
T Consensus 8 ~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (101)
T 3m63_B 8 HPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE 84 (101)
T ss_dssp -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred CCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence 456788876 4555555555567888886 8899999999999999999999999999999999999999999999999
Q ss_pred hhccccCCceEEEEE
Q 026957 134 DYNIQKESTLHLVLR 148 (230)
Q Consensus 134 ~~~i~~~~~i~l~~~ 148 (230)
+||+++|++|+++.+
T Consensus 85 ~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 85 SYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTCCTTEEEEECCC
T ss_pred HCCCCCCCEEEEEeC
Confidence 999999999998754
No 94
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=4.7e-17 Score=112.81 Aligned_cols=73 Identities=36% Similarity=0.503 Sum_probs=69.4
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++..+..
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 90 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999999886 79999999999999999999999999999999999999999999999999999999988764
No 95
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=3.7e-17 Score=112.44 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=68.8
Q ss_pred CEEEEEcCCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-Ccccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++..| +++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ .+|++|+|.++++|++..+..
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 7899999754 7999999999999999999999999999999999999999988 799999999999999987653
No 96
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.69 E-value=6.3e-17 Score=110.23 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=67.9
Q ss_pred CEEEEEcCCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCccccccc-ccccceeeeeee
Q 026957 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i-~~~~~i~l~~~~ 73 (230)
|+|+|+...+ ..+++++.|++||++||++|++.+||||++|+|+++|+.++|+.||++||| .+|+++||++..
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999875 799999999999999999999999999999999999999999999999999 599999998743
No 97
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=4.6e-17 Score=110.03 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=62.4
Q ss_pred EEEEcCC----CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeee
Q 026957 3 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 3 v~v~~~~----g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
+.|+..+ |+.++++|++++||.+||++|++.+|+||++|+|+|+|+.|+|+.||++|+|.++++|+++
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl 89 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL 89 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEE
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE
Confidence 4555666 7899999999999999999999999999999999999999999999999999999999443
No 98
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.69 E-value=1e-16 Score=106.64 Aligned_cols=76 Identities=29% Similarity=0.504 Sum_probs=70.6
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhH---hCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEee
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~---~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (230)
..|+|+|+..+|+.+.+++++++||++||++|++. .|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.+.+
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 56899999999999999999999999999999998 88999999999999999999999999999999999987654
No 99
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=7.7e-17 Score=107.09 Aligned_cols=71 Identities=28% Similarity=0.438 Sum_probs=66.7
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
++++.++|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++...+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 56777899999999999999999999999999999999999999999999999999999999999987653
No 100
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.69 E-value=6.7e-17 Score=122.24 Aligned_cols=82 Identities=89% Similarity=1.190 Sum_probs=77.8
Q ss_pred EeecceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026957 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~ 227 (230)
.....|.++|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++|
T Consensus 101 ~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrG 180 (189)
T 3q3f_A 101 TDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 180 (189)
T ss_dssp SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCC
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCC
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026957 228 GD 229 (230)
Q Consensus 228 g~ 229 (230)
|.
T Consensus 181 G~ 182 (189)
T 3q3f_A 181 GG 182 (189)
T ss_dssp CC
T ss_pred CC
Confidence 95
No 101
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.7e-16 Score=107.81 Aligned_cols=76 Identities=29% Similarity=0.567 Sum_probs=71.2
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccc---cCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~---~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
|.++|+..+|+.+.+++++++||.+||++|++. .|+|+++|+|+|+|+.|+|+++|++|||++|++|+++.+...|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~ 79 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKA 79 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCC
Confidence 578899889999999999999999999999999 7899999999999999999999999999999999999986544
No 102
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.7e-17 Score=113.82 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=67.5
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|.|+|++ +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|+++.+
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 4688887 8999999999999999999999999999999999999999999999999999999999999865
No 103
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.68 E-value=4.8e-17 Score=109.29 Aligned_cols=73 Identities=21% Similarity=0.408 Sum_probs=68.8
Q ss_pred CEEEEEcCCCcEEEE-EecCCCcHHHHHHHhhhhhCCCCCceEEE---eccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~-~v~~~~tv~~lK~~i~~~~gi~~~~q~l~---~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+. +|+.+.+ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|.++++|+|+..+.
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~ 84 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRE 84 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCS
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCc
Confidence 7899996 7999999 99999999999999999999999999999 999999999999999999999999987653
No 104
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6e-17 Score=110.08 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=66.9
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.++++.++|+++++++++++||.+||++|++.+||||++|+|++ .+..|+|+.+|++|+|.+++++||++.+
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence 678888999999999999999999999999999999999999985 4444999999999999999999998766
No 105
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.68 E-value=2.7e-18 Score=125.78 Aligned_cols=74 Identities=97% Similarity=1.310 Sum_probs=0.0
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~ 74 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 106
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.68 E-value=1.2e-16 Score=112.33 Aligned_cols=74 Identities=27% Similarity=0.490 Sum_probs=68.2
Q ss_pred CEEEEEcCCCcEE-EEEecCCCcHHHHHHHh-----hhhhCCCC--CceEEEeccccccCCCcccccccccc------cc
Q 026957 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i-----~~~~gi~~--~~q~l~~~g~~l~d~~~l~~~~i~~~------~~ 66 (230)
|.|+|++.+|+.+ +++++|++||.+||++| ++..|+|+ ++|+|+|+|+.|+|+.||++|+|..+ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999888 79999999999999999 67889997 89999999999999999999999988 67
Q ss_pred eeeeeeec
Q 026957 67 LHLVLRLR 74 (230)
Q Consensus 67 i~l~~~~~ 74 (230)
+||++++.
T Consensus 97 mhlVlrl~ 104 (126)
T 1se9_A 97 MHVIIQAP 104 (126)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 88888774
No 107
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.68 E-value=9.1e-17 Score=113.53 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=67.9
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhh------hhCCC--CCceEEEeccccccCCCccccccccccc--ceeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gi~--~~~q~l~~~g~~l~d~~~l~~~~i~~~~--~i~l~ 70 (230)
|.|+|+++.|+++++++++++||.+||++|++ .+|+| +++|+|+|+|+.|+|+.+|++|+|..++ ++||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 78885 8999999999999999999999999665 67888
Q ss_pred eeec
Q 026957 71 LRLR 74 (230)
Q Consensus 71 ~~~~ 74 (230)
+++.
T Consensus 98 ~r~~ 101 (125)
T 2gow_A 98 ARET 101 (125)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 7764
No 108
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=6.4e-17 Score=109.84 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=67.5
Q ss_pred CEEEEEcCCCcEE-EEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+. .|+.+ .+++++++||.+||++|++.+|+|+++|+|+|.|+.|+|+ +|++|+|.++++|+|+....
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 6899995 78999 6999999999999999999999999999999999999999 99999999999999987653
No 109
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.1e-17 Score=112.08 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=69.7
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEee
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (230)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998754
No 110
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.68 E-value=2.4e-16 Score=106.92 Aligned_cols=77 Identities=21% Similarity=0.412 Sum_probs=69.7
Q ss_pred ecceeEEEEeccCceeEEE--eeccchHHHHHHhh-ccccCCCCCceEEEEcCeecCCCCcccccCC-CCCCEEEEEEEe
Q 026957 150 RGGMQIFVKTLTGKTITLE--VESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 225 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~~~--v~~~~tv~~lK~~i-~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i-~~~~~i~~~~~~ 225 (230)
...|.+++++.+|++++++ +++++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++++.
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 4568999999999988875 45999999999999 8888999999999999999999999999999 999999999875
Q ss_pred c
Q 026957 226 R 226 (230)
Q Consensus 226 ~ 226 (230)
.
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 3
No 111
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.50 E-value=3.3e-18 Score=111.52 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=71.6
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~ 227 (230)
|.++|+..+|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+++|++||+++|++|++++|++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 567888888999999999999999999999999999999999999999999999999999999999999999987
No 112
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.67 E-value=6.1e-17 Score=110.14 Aligned_cols=70 Identities=24% Similarity=0.382 Sum_probs=64.6
Q ss_pred CEEEEEcCCCc--EEEEEecCCCcHHHHHHHhhhh-hCCCC-CceEEEeccccccCCCccccc--ccccccceeee
Q 026957 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIPP-DQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~-~gi~~-~~q~l~~~g~~l~d~~~l~~~--~i~~~~~i~l~ 70 (230)
|+|+||+++|+ .+++++++++||.+||++|++. .|+|| ++|+|+|+|+.|+|+.+|++| +|.++++|||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 68999999998 6799999999999999999996 57765 999999999999999999999 99999999874
No 113
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.67 E-value=1.8e-16 Score=111.37 Aligned_cols=69 Identities=29% Similarity=0.608 Sum_probs=66.7
Q ss_pred cCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
+|+++.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++||.
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk 112 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGP 112 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 578899999999999999999999999999999999999999999999999999999999999999996
No 114
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.6e-16 Score=108.69 Aligned_cols=78 Identities=33% Similarity=0.435 Sum_probs=72.4
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
..|.++|+..+++ +.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|+++.|+++|.
T Consensus 21 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 21 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp TEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred CeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 3478888887776 78999999999999999999999999999999999999999999999999999999999998873
No 115
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2.1e-16 Score=109.43 Aligned_cols=79 Identities=27% Similarity=0.463 Sum_probs=74.3
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
..|.++|+..+|+++.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+++|++|||++|++|+++.+...++
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN 100 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 4488999988999999999999999999999999999999999999999999999999999999999999999987664
No 116
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=6.7e-17 Score=110.05 Aligned_cols=77 Identities=27% Similarity=0.341 Sum_probs=72.9
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
.|.++|+.. ++.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+++|++|+|++|++|+++.+++||.
T Consensus 17 ~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 17 IIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp EEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred cEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 477888877 89999999999999999999999999999999999999999999999999999999999999999885
No 117
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.66 E-value=3.7e-16 Score=101.90 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=68.1
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 225 (230)
|.++++. +|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++||+++|++|++..+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 7788888 88999999999999999999999999999999999999999999999999999999999998764
No 118
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=4.8e-17 Score=111.35 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=71.1
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCC---------------CceEEEEcCeecC-CCCcccccCCCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQK 215 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~---------------~~~~l~~~g~~l~-d~~~L~~~~i~~ 215 (230)
.|.|+|+..+|++++++|++++||.+||++|+++.++|+ ++|+|+|+|+.|. |+++|++|||++
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 388999999999999999999999999999999999877 3579999999995 779999999999
Q ss_pred CCEEEEEEEecCC
Q 026957 216 ESTLHLVLRLRGG 228 (230)
Q Consensus 216 ~~~i~~~~~~~~g 228 (230)
|++|+++.|++|.
T Consensus 87 g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 87 RDEVSFIKKLGQK 99 (105)
T ss_dssp SEEEEEEECSCSC
T ss_pred CCEEEEEehhccC
Confidence 9999999999875
No 119
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.66 E-value=6.9e-18 Score=120.89 Aligned_cols=77 Identities=96% Similarity=1.299 Sum_probs=0.6
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
|.++|+..+|+++.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|++||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 56788888999999999999999999999999999999999999999999999999999999999999999999995
No 120
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=3.1e-16 Score=111.53 Aligned_cols=77 Identities=30% Similarity=0.374 Sum_probs=68.7
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
.|.|+|+.. ++.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|.+|+|++|++|+++.+++||.
T Consensus 32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 32 IIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred cEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 477888877 88999999999999999999999999999999999999999999999999999999999999999884
No 121
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=4.3e-16 Score=107.91 Aligned_cols=77 Identities=34% Similarity=0.446 Sum_probs=71.6
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
.|.|+|+..+++ +.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+++|.+|+|++|++|+++.|+++|.
T Consensus 17 ~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 17 LIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp EEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred eEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 377888877775 78999999999999999999999999999999999999999999999999999999999999873
No 122
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.64 E-value=1.2e-17 Score=122.34 Aligned_cols=77 Identities=96% Similarity=1.316 Sum_probs=0.0
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++||+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 56788888999999999999999999999999999999999999999999999999999999999999999999995
No 123
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.64 E-value=8e-16 Score=105.48 Aligned_cols=81 Identities=30% Similarity=0.358 Sum_probs=72.5
Q ss_pred EEeecceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026957 147 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 147 ~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 226 (230)
+.....|.++|+.. |+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|||++|++|+++.+++
T Consensus 20 ~~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 20 QGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp ---CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred CCCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 33445688888877 78899999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 026957 227 GG 228 (230)
Q Consensus 227 ~g 228 (230)
+.
T Consensus 99 ~~ 100 (101)
T 2klc_A 99 NR 100 (101)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 124
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=3.2e-16 Score=107.74 Aligned_cols=78 Identities=21% Similarity=0.378 Sum_probs=71.2
Q ss_pred ceeEEEEeccC----ceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCC-CcccccCCCCCCEEEEEEEec
Q 026957 152 GMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 152 ~~~i~v~~~~~----~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~-~~L~~~~i~~~~~i~~~~~~~ 226 (230)
.|.+.|+...+ +.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ ++|.+|+|++|++|+++.+.+
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 47778877543 7899999999999999999999999999999999999999877 799999999999999999999
Q ss_pred CCC
Q 026957 227 GGD 229 (230)
Q Consensus 227 ~g~ 229 (230)
||.
T Consensus 87 gg~ 89 (102)
T 1v5o_A 87 VGL 89 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 125
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=4.7e-16 Score=104.98 Aligned_cols=73 Identities=23% Similarity=0.429 Sum_probs=67.3
Q ss_pred CEEEEEcCCCcEEEEEecCC-----CcHHHHHHHhhhhhCCCCCceEEEeccccccC-CCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~-----~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d-~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++ .|+.+.++++++ +||.+||++|++.+|+|+++|+|+|.|+.|.| +.+|++|+|.++++|++..+..
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN 86 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence 6899998 589999999996 99999999999999999999999999999998 5689999999999999987653
No 126
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=1.7e-16 Score=107.60 Aligned_cols=71 Identities=21% Similarity=0.367 Sum_probs=65.3
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|+ .+|+++.+++++++||.+||++|++.+|+|+++|+|+|.|+.|+| .+|++|+|.++++|+|+...
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence 578998 578999999999999999999999999999999999999999954 59999999999999997654
No 127
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=3e-16 Score=108.78 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.7
Q ss_pred CEEEEEcCCC---cEEEEEecC---------CCcHHHHHHHhhhhh--CCCCCc-eEEEeccccccCCCccccccccccc
Q 026957 1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (230)
Q Consensus 1 m~v~v~~~~g---~~~~~~v~~---------~~tv~~lK~~i~~~~--gi~~~~-q~l~~~g~~l~d~~~l~~~~i~~~~ 65 (230)
|+|+||+.+| +.+.+++++ ++||.+||++|+..+ |+|+++ |+|+|+|+.|+|+.+|++|+|.+++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 6899999999 899999555 599999999999999 999999 9999999999999999999999999
Q ss_pred ceeeeeeec
Q 026957 66 TLHLVLRLR 74 (230)
Q Consensus 66 ~i~l~~~~~ 74 (230)
+||++.+..
T Consensus 93 ~i~lv~~~~ 101 (107)
T 1x1m_A 93 TVHVLRKSW 101 (107)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999988653
No 128
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.64 E-value=7.4e-16 Score=108.23 Aligned_cols=79 Identities=29% Similarity=0.566 Sum_probs=71.3
Q ss_pred CceeeEEEec----------cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceE
Q 026957 75 GGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 144 (230)
Q Consensus 75 ~~~~v~v~~~----------~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~ 144 (230)
..+.|.|+.+ +|+.+.+++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4456666654 478899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecce
Q 026957 145 LVLRLRGGM 153 (230)
Q Consensus 145 l~~~~~~~~ 153 (230)
+++++++|.
T Consensus 104 lv~rl~GGk 112 (115)
T 1we7_A 104 LALKERSGP 112 (115)
T ss_dssp EEECCCSCC
T ss_pred EEEEcCCCC
Confidence 999988773
No 129
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.64 E-value=1.4e-15 Score=106.83 Aligned_cols=79 Identities=25% Similarity=0.449 Sum_probs=71.3
Q ss_pred cceeEEEEeccCcee-EEEeeccchHHHHHHhh-----ccccCCCC--CceEEEEcCeecCCCCcccccCCCCC------
Q 026957 151 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ 216 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~-~~~v~~~~tv~~lK~~i-----~~~~~~~~--~~~~l~~~g~~l~d~~~L~~~~i~~~------ 216 (230)
.-|.+.++..+|+.+ ++++++++||.+||++| +++.++|+ ++|+|+|.|+.|+|++||++|+|++|
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 447889999999888 79999999999999999 55667886 79999999999999999999999998
Q ss_pred CEEEEEEEecCCC
Q 026957 217 STLHLVLRLRGGD 229 (230)
Q Consensus 217 ~~i~~~~~~~~g~ 229 (230)
+++++++|++||+
T Consensus 95 ~tmhlVlrl~g~~ 107 (126)
T 1se9_A 95 TTMHVIIQAPVTE 107 (126)
T ss_dssp EEEEEEECCCSSC
T ss_pred EEEEEEeccCCcc
Confidence 7899999999885
No 130
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=7.5e-16 Score=107.31 Aligned_cols=80 Identities=23% Similarity=0.335 Sum_probs=70.2
Q ss_pred eecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHh------HhCC--CCCCcEEEEcCcccCCCcchhhhccccC--C
Q 026957 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--S 141 (230)
Q Consensus 72 ~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~------~~~i--~~~~q~L~~~g~~L~d~~~L~~~~i~~~--~ 141 (230)
.+.+.|.|+|++..|+++.+++++++||++||++|++ +.++ |+++|+|+|.|+.|+|+.+|++|+|..+ .
T Consensus 12 ~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~ 91 (116)
T 1wgh_A 12 VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT 91 (116)
T ss_dssp CCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEE
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCce
Confidence 3456799999999999999999999999999999999 4564 6999999999999999999999999866 5
Q ss_pred ceEEEEEeec
Q 026957 142 TLHLVLRLRG 151 (230)
Q Consensus 142 ~i~l~~~~~~ 151 (230)
++|+++++..
T Consensus 92 tlhLvlr~~~ 101 (116)
T 1wgh_A 92 VMHLVARETL 101 (116)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEccCCC
Confidence 6888877653
No 131
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=5e-16 Score=105.46 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=67.4
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCC-Ccccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|+..+|+.+.+++++++||.+||++|+... +++|+|+|+|+.|+|+ .+|++|+|.++++||++++.+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 7899999999999999999999999999999998 8899999999999999 999999999999999988753
No 132
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.9e-16 Score=104.11 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=63.6
Q ss_pred CEEEEEcCCCcEE--EE-EecCCCcHHHHHHHhhhh-hCCCCCceEEEec--cccccCCCcccccccccccceee
Q 026957 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~--~~-~v~~~~tv~~lK~~i~~~-~gi~~~~q~l~~~--g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
|.|+|++..|+.+ ++ +|+|++||.+||++|++. .|+||++|+|.|. |+.|+|+.+|++|+|.++++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999988765 58 999999999999999995 8999999999976 89999999999999999999775
No 133
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=105.08 Aligned_cols=77 Identities=16% Similarity=0.266 Sum_probs=69.5
Q ss_pred EEEEE-cCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCcee
Q 026957 2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 78 (230)
Q Consensus 2 ~v~v~-~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~ 78 (230)
.|.|+ ..+|..++++++++.||.+||++++...++|+++|+|.|+|+.|.|+.||.+||++++.++||+++..+.-.
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~~ 94 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDL 94 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTTT
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCcc
Confidence 35555 557889999999999999999999999999999999999999999999999999999999999988754433
No 134
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.3e-15 Score=102.78 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=61.7
Q ss_pred EEEEEcCCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec--cc---c-ccCCCcccccccccccceeee
Q 026957 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---Q-LEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~--g~---~-l~d~~~l~~~~i~~~~~i~l~ 70 (230)
.|+|++..+ +.+++++++++||++||++|+..+||||++|+|+|. |+ . ++|+.+|++|+|.++++|+++
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 578887665 489999999999999999999999999999999997 34 3 489999999999999999986
No 135
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.61 E-value=1.2e-15 Score=101.22 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=63.2
Q ss_pred EEEEEc--CCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-------ccccccCCCcccccccccccceeeeee
Q 026957 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 2 ~v~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-------~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+|.|.+ .+++.+...+++++||.+||++|+..+||||++|+|.| .|+.++|+.+|++|+|.+|++||++-.
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 455543 35677899999999999999999999999999999996 488999999999999999999999854
Q ss_pred e
Q 026957 73 L 73 (230)
Q Consensus 73 ~ 73 (230)
.
T Consensus 84 ~ 84 (86)
T 4b6w_A 84 Q 84 (86)
T ss_dssp C
T ss_pred C
Confidence 3
No 136
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.60 E-value=3.3e-15 Score=101.75 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=66.7
Q ss_pred ceeeEEEeccC--eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhcc-ccCCceEEEEE
Q 026957 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 148 (230)
Q Consensus 76 ~~~v~v~~~~g--~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~ 148 (230)
.|.|+|+...+ ..+.+++++++||++||++|++++|+|++.|||+++|+.++|+.+|.+||| ++|+++|+++-
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 36788887764 789999999999999999999999999999999999999999999999999 59999999874
No 137
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.59 E-value=5.1e-15 Score=99.35 Aligned_cols=74 Identities=22% Similarity=0.432 Sum_probs=68.1
Q ss_pred CceeeEEEeccCeeEee-ecCCCChHHHHHHHHHhHhCCCCCCcEEE---EcCcccCCCcchhhhccccCCceEEEEEe
Q 026957 75 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i-~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (230)
..|.|+|+. .|+.+.+ ++++++||++||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|.+|++|+++...
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 457888885 7889999 99999999999999999999999999999 99999999999999999999999887543
No 138
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.59 E-value=3.4e-15 Score=105.44 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=69.3
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhcc------ccCC--CCCceEEEEcCeecCCCCcccccCCCCCC--EEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~------~~~~--~~~~~~l~~~g~~l~d~~~L~~~~i~~~~--~i~~~ 222 (230)
|.+.++..+|+++++++++++||.+||++|++ +.++ ++++|+|+|.|+.|+|+++|++|+|++|+ +++++
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 67888888899999999999999999999999 5677 48899999999999999999999999776 78999
Q ss_pred EEecCCC
Q 026957 223 LRLRGGD 229 (230)
Q Consensus 223 ~~~~~g~ 229 (230)
+|+.+++
T Consensus 98 ~r~~~~~ 104 (125)
T 2gow_A 98 ARETLPE 104 (125)
T ss_dssp ECSCCSS
T ss_pred ecCCCCc
Confidence 9987764
No 139
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.59 E-value=8.7e-17 Score=120.78 Aligned_cols=69 Identities=28% Similarity=0.364 Sum_probs=0.0
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|+|+|++++|++++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|+ ++++|||++++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLr 69 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLL 69 (189)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecC
Confidence 899999999999999999999999999999999999999999999999999999998 889999998764
No 140
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.8e-15 Score=101.46 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=70.1
Q ss_pred ceeeEEE-eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 76 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 76 ~~~v~v~-~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
.+.|+|+ .+.++.+.++++++.||++||+.++...++|++.|+|+|+|+.|.|+.||.+||+++|.+||++++...+
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 3566666 5678899999999999999999999999999999999999999999999999999999999999886544
No 141
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.59 E-value=3.6e-15 Score=98.95 Aligned_cols=69 Identities=29% Similarity=0.469 Sum_probs=63.9
Q ss_pred EEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEE
Q 026957 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 80 ~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (230)
.++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.+
T Consensus 15 ~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 15 LTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 344678999999999999999999999999999999999999999999999999999999999988643
No 142
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-15 Score=102.32 Aligned_cols=72 Identities=24% Similarity=0.359 Sum_probs=64.2
Q ss_pred CceeeEEEeccCe--eEeeecCCCChHHHHHHHHHhHh-CCC-CCCcEEEEcCcccCCCcchhhh--ccccCCceEEE
Q 026957 75 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE-GIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 146 (230)
Q Consensus 75 ~~~~v~v~~~~g~--~~~i~v~~~~tV~~lK~~i~~~~-~i~-~~~q~L~~~g~~L~d~~~L~~~--~i~~~~~i~l~ 146 (230)
..|.|+|+..+|+ .+.+++++++||++||++|+++. |+| +++|+|+|+|+.|+|+.+|++| +|.++++|+++
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 4589999999887 57888999999999999999974 555 5999999999999999999999 99999999873
No 143
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=7.3e-15 Score=98.96 Aligned_cols=79 Identities=16% Similarity=0.354 Sum_probs=75.0
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~~ 230 (230)
.+.|.|+..+|+.+.+++.+++++..|+++++++.|+|+++++|+|+|+.|.++.|+++|++++||+|+++.+++||++
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~~ 85 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVP 85 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESCC
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence 4778888888999999999999999999999999999999999999999999999999999999999999999999963
No 144
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.58 E-value=3.8e-15 Score=120.49 Aligned_cols=73 Identities=96% Similarity=1.295 Sum_probs=69.4
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|+|+|++.+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++.
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998764
No 145
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=8.4e-15 Score=101.47 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=68.8
Q ss_pred CceeeEEEeccC---eeEeeecCC---------CChHHHHHHHHHhHh--CCCCCC-cEEEEcCcccCCCcchhhhcccc
Q 026957 75 GGMQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 75 ~~~~v~v~~~~g---~~~~i~v~~---------~~tV~~lK~~i~~~~--~i~~~~-q~L~~~g~~L~d~~~L~~~~i~~ 139 (230)
..|.|+|+..++ +.+.+++++ ++||++||++|+..+ ++|+++ |+|+|+|+.|+|+.+|++|++.+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 358899998888 788898554 499999999999999 999999 99999999999999999999999
Q ss_pred CCceEEEEEee
Q 026957 140 ESTLHLVLRLR 150 (230)
Q Consensus 140 ~~~i~l~~~~~ 150 (230)
|++|+++.+..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999987654
No 146
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=5.3e-15 Score=100.11 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=61.7
Q ss_pred EEEEEcCCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccc---c----ccCCCcccccccccccceeeee
Q 026957 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~---~----l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.++|++... ..+++++++++||++||++|+..+||||++|+|+|.|+ . ++|+.+|++|+|.++++|+++-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 567776544 47999999999999999999999999999999999873 2 5889999999999999999874
No 147
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=1.8e-14 Score=97.69 Aligned_cols=75 Identities=27% Similarity=0.407 Sum_probs=69.0
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCC-CcccccCCCCCCEEEEEEEecCC
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~-~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
..|.|+|+..+|+.+.+++++++||.+||++|++.. +++|+|+|+|+.|+|+ ++|++|+|++|++|+++.+..+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 357889998889999999999999999999999997 8999999999999988 99999999999999999986553
No 148
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.55 E-value=6.6e-15 Score=101.92 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=66.0
Q ss_pred CEEEEEcCCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceEEEeccc-----------c----ccCCCcccccccccc
Q 026957 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~-----------~----l~d~~~l~~~~i~~~ 64 (230)
|.|+|++.+|.. .++++ +++||.+||++|++.+|||+++|+|++.|+ . ++|+.+|++|||.++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999966 79999 999999999999999999999999999887 4 578899999999999
Q ss_pred cceeeeeee
Q 026957 65 STLHLVLRL 73 (230)
Q Consensus 65 ~~i~l~~~~ 73 (230)
++||+....
T Consensus 87 ~~L~l~~~~ 95 (107)
T 1wf9_A 87 SMVYLAYEG 95 (107)
T ss_dssp CEEECCCSS
T ss_pred CEEEEEeCC
Confidence 999998654
No 149
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=3.9e-14 Score=94.66 Aligned_cols=79 Identities=16% Similarity=0.391 Sum_probs=74.9
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~~ 230 (230)
.+.|.|+..+|+.+.+.+.+++++..|++.++++.|++++.++|+|+|..|.++.|+++|++++||+|++..+++||++
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~~ 83 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 83 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCcc
Confidence 4678888888999999999999999999999999999999999999999999999999999999999999999999963
No 150
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.54 E-value=2.2e-14 Score=96.82 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=63.3
Q ss_pred cCceeeEEEeccC--eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEc--Cc---cc-CCCcchhhhccccCCceEE
Q 026957 74 RGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 74 ~~~~~v~v~~~~g--~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~--g~---~L-~d~~~L~~~~i~~~~~i~l 145 (230)
.+.+.|.|+...+ +.+.+++++++||++||++|+..+|+|++.|+|+|. |+ .| +|+.+|++|+|++|++|++
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 3456777776655 478999999999999999999999999999999997 44 34 8999999999999999988
Q ss_pred E
Q 026957 146 V 146 (230)
Q Consensus 146 ~ 146 (230)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 6
No 151
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.54 E-value=1e-14 Score=96.68 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=60.4
Q ss_pred eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-------cCcccCCCcchhhhccccCCceEEEEEe
Q 026957 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 83 ~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-------~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (230)
..+.+.+...+++++||++||++|+..+|+|++.|+|+| .|+.++|+++|++|+|++|++||++-+.
T Consensus 11 ~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 11 ASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQ 84 (86)
T ss_dssp TCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCC
Confidence 345677899999999999999999999999999999996 4788999999999999999999998543
No 152
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.54 E-value=1.1e-14 Score=98.80 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=64.7
Q ss_pred eeEEEEeccCcee-EEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026957 153 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~-~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
|.+.|+ +.++.+ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+++..
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 667788 468899 6999999999999999999999999999999999999999 999999999999998754
No 153
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.54 E-value=1.7e-14 Score=102.15 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=62.7
Q ss_pred CEEEEEcCCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc---c---c-ccCCCcccccccccccceeeeee
Q 026957 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g---~---~-l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|.|+|++.++. .+++++++++||++||++|+..+||||++|+|+|.| + . ++|+.+|++|||.++++||+...
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 35778776553 689999999999999999999999999999999987 3 2 47899999999999999999853
No 154
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=2.2e-14 Score=96.70 Aligned_cols=75 Identities=24% Similarity=0.449 Sum_probs=66.8
Q ss_pred CceeeEEEeccCeeEeeecCCC-----ChHHHHHHHHHhHhCCCCCCcEEEEcCcccCC-CcchhhhccccCCceEEEEE
Q 026957 75 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~-----~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d-~~~L~~~~i~~~~~i~l~~~ 148 (230)
..|.|+|+. .|+.+.++++++ +||++||++|++.+|+|+++|+|+|+|+.|.| +.+|++|++.+|++|+++.+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 357888887 578889999985 99999999999999999999999999999988 66899999999999998765
Q ss_pred ee
Q 026957 149 LR 150 (230)
Q Consensus 149 ~~ 150 (230)
..
T Consensus 85 ~~ 86 (92)
T 1wxv_A 85 KN 86 (92)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 155
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=2.2e-14 Score=97.21 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=61.7
Q ss_pred EEEEEcCCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc---cc----ccCCCcccccccccccceeeee
Q 026957 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g---~~----l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.|+|++.++. .+++++++++||.+||++|+..+|+|+++|+|+|.| +. ++|+.+|++|||.++++||+..
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 5777775443 789999999999999999999999999999999986 33 5899999999999999999874
No 156
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=97.95 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=65.8
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEE-cCeecCCCCcccccCCCCCCEEEEEEEe
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~-~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 225 (230)
+|.+++..++|+++.+++++++||.+||++|++++|+||++|+|++ .+..|+|+.+|++|+|++|++|+++++-
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence 3566677789999999999999999999999999999999999984 4444899999999999999999998873
No 157
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=2e-14 Score=97.37 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=64.8
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEE
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (230)
..|.|+|+ ..++.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+| .+|++|+|.++++|+++.+
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence 34778887 568899999999999999999999999999999999999999954 5999999999999988754
No 158
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.51 E-value=2e-14 Score=119.46 Aligned_cols=73 Identities=32% Similarity=0.562 Sum_probs=68.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhh---hhCCCCCceEEEeccccccCCCcccccccccccce-eeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~---~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i-~l~~~~ 73 (230)
|+|+||+.+|+++.++|++++||.+||.+|+. .+|||+++|+|+|.|+.|+|+.+|++|+|.++++| +++.++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999 67899999999999999999999999999999998 666555
No 159
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.49 E-value=9.7e-14 Score=93.87 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=61.5
Q ss_pred ceeeEEEeccC--eeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCc---c----cCCCcchhhhccccCCceEEE
Q 026957 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g--~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~---~----L~d~~~L~~~~i~~~~~i~l~ 146 (230)
.+.+.|..... +.+++++++++||++||++|+.++|+|++.|+|+|.|+ . ++|+++|++|+|++|++|+++
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 35566655433 57899999999999999999999999999999999873 3 488999999999999999886
Q ss_pred E
Q 026957 147 L 147 (230)
Q Consensus 147 ~ 147 (230)
-
T Consensus 94 d 94 (97)
T 2kj6_A 94 D 94 (97)
T ss_dssp E
T ss_pred e
Confidence 4
No 160
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.49 E-value=2.6e-15 Score=112.82 Aligned_cols=72 Identities=29% Similarity=0.412 Sum_probs=0.5
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
|.|+|+..+|++++++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|+ ++++|+|++|++||.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 578899999999999999999999999999999999999999999999999999998 999999999999985
No 161
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=3.2e-14 Score=94.75 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=63.2
Q ss_pred ceeeEEEeccCeeE--ee-ecCCCChHHHHHHHHHhH-hCCCCCCcEEEEc--CcccCCCcchhhhccccCCceEE
Q 026957 76 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 76 ~~~v~v~~~~g~~~--~i-~v~~~~tV~~lK~~i~~~-~~i~~~~q~L~~~--g~~L~d~~~L~~~~i~~~~~i~l 145 (230)
.|.|+|+...|+.+ .+ ++++++||++||++|++. .++|+++|+|++. |+.|+|+.+|++|++.+|++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 48899999988775 47 899999999999999995 7999999999976 89999999999999999998865
No 162
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.48 E-value=1.1e-13 Score=111.92 Aligned_cols=78 Identities=92% Similarity=1.273 Sum_probs=71.6
Q ss_pred eecceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEec
Q 026957 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 149 ~~~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 226 (230)
..+.|.|.|+..+|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|++++|++
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 346689999999999999999999999999999999999999999999999999999999999999999999999874
No 163
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.47 E-value=1.9e-13 Score=91.93 Aligned_cols=77 Identities=17% Similarity=0.392 Sum_probs=70.4
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
.+.|.|+..+|+.+.+.+.+++++..|+..++++.|++++.++|+|+|..|.++.|+.+|++.+|++|+++.+++||
T Consensus 17 ~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred eEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 46677888889999999999999999999999999999999999999999999999999999999999999999998
No 164
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.46 E-value=7.4e-14 Score=92.83 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=63.5
Q ss_pred CEEEEEcCCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCceEEEec--ccccc---CCCcccccccccccceeeeee
Q 026957 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~--g~~l~---d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|+|+|++.+|.. .+. +++++||.+||++|++.+|+|+++|+|+++ ++.++ ++.+|++|||.+|++|++...
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 899999999965 477 999999999999999999999999999986 47774 678999999999999998754
No 165
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.45 E-value=2.3e-13 Score=91.60 Aligned_cols=75 Identities=16% Similarity=0.379 Sum_probs=71.4
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecC
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (230)
|.|+|+..+|+.+.+.|.+++++..|+++++++.|+|+++|+|+|+|+.|.++.|+++|++.++++|+++++..+
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEE
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 679999999999999999999999999999999999999999999999999999999999999999999987643
No 166
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=2e-13 Score=93.44 Aligned_cols=79 Identities=15% Similarity=0.341 Sum_probs=74.3
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~~ 230 (230)
.+.|.|+..+|+.+.+.+.+++++..|+..++++.|++++.++|+|+|..|.++.|+.+|++.+|++|+++.+++||+.
T Consensus 24 ~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~~ 102 (104)
T 1wz0_A 24 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGPS 102 (104)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCSS
T ss_pred eEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCC
Confidence 4667788888999999999999999999999999999999999999999999999999999999999999999999963
No 167
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.43 E-value=1.9e-13 Score=113.57 Aligned_cols=79 Identities=30% Similarity=0.568 Sum_probs=72.3
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhcc---ccCCCCCceEEEEcCeecCCCCcccccCCCCCCEE-EEEEEec
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 226 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~---~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i-~~~~~~~ 226 (230)
..|.|+|+..+|+++.++|++++||.+||++|+. +.|+|+++|+|+|+|+.|+|+++|.+|+|++|++| +++.|.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 3478999999999999999999999999999999 67799999999999999999999999999999998 7777777
Q ss_pred CCC
Q 026957 227 GGD 229 (230)
Q Consensus 227 ~g~ 229 (230)
+|.
T Consensus 86 ~~~ 88 (368)
T 1oqy_A 86 AGQ 88 (368)
T ss_dssp SSS
T ss_pred CCC
Confidence 763
No 168
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.43 E-value=5.4e-13 Score=91.28 Aligned_cols=76 Identities=13% Similarity=0.329 Sum_probs=69.8
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
.+.|.|+. +|+.+.+.+..++++..|+..++++.|++++.++|+|+|+.|.++.|+++|++++||+|++.++++||
T Consensus 31 ~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 31 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred eEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 36778888 89999999999999999999999999999999999999999999999999999999999999999998
No 169
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.42 E-value=1.9e-13 Score=111.92 Aligned_cols=75 Identities=21% Similarity=0.431 Sum_probs=66.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE---eccccccCCCcccccccccccceeeeeeecCc
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~---~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (230)
|.|+|+. +|+.+++++++++||++||++|++.+||||++|+|+ |.|+.|.|+.+|++|+|.+|++++|+..+...
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~~ 83 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEAD 83 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC--
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchhh
Confidence 4688885 799999999999999999999999999999999999 89999999999999999999999998776543
No 170
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=4.4e-13 Score=90.75 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=61.0
Q ss_pred eeeEEEeccCe-eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC---cc----cCCCcchhhhccccCCceEEEE
Q 026957 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g---~~----L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
+.+.|+..... .+.+++++++||++||++|+..+|+|+++|+|+|.| +. ++|+.+|++|++.+|++||+.-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 56666655442 688999999999999999999999999999999986 43 5899999999999999998864
No 171
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.39 E-value=1.1e-12 Score=83.95 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.6
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|+..+|+...+.|.+++++..|+++.+++.|+|++.++|+|+|+.|.++.|++++++.++++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999999999885
No 172
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=1.1e-12 Score=87.58 Aligned_cols=79 Identities=16% Similarity=0.389 Sum_probs=74.7
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecce
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 153 (230)
..+.|.|+..+|+.+.+.+.+++++..|+..++++.|+|++.++|+|.|+.|.++.|+++|++.+|++|++.....+|.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 4578899999999999999999999999999999999999999999999999999999999999999999999888774
No 173
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.38 E-value=5.5e-13 Score=92.19 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=64.9
Q ss_pred ceeeEEEeccCeeEeeecC-CCChHHHHHHHHHhHhCCCCCCcEEEEcCc-----------c----cCCCcchhhhcccc
Q 026957 76 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK 139 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~-----------~----L~d~~~L~~~~i~~ 139 (230)
.|.|.|+..+|.. .++++ +++||.+||++|++++++|+++|+|.+.++ . ++|+.+|++||+.+
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 3789999999976 78999 999999999999999999999999998887 4 58899999999999
Q ss_pred CCceEEEEE
Q 026957 140 ESTLHLVLR 148 (230)
Q Consensus 140 ~~~i~l~~~ 148 (230)
|++||+...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999988754
No 174
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.37 E-value=1.8e-12 Score=91.69 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=61.6
Q ss_pred eeEEEEeccCc-eeEEEeeccchHHHHHHhhccccCCCCCceEEEEcC---e---e-cCCCCcccccCCCCCCEEEEEEE
Q 026957 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g---~---~-l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
+.+.|+..... .+.+++++++||++||++|+..+|+|+++|+|+|.| + . ++|+++|.+|||++|++|+++..
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 45666655443 688999999999999999999999999999999876 3 2 48999999999999999998864
No 175
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.37 E-value=6.2e-13 Score=91.67 Aligned_cols=78 Identities=15% Similarity=0.374 Sum_probs=73.5
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
.+.|.|+..+|+.+.+.+.+++++..|+..++++.|++++.++|+|+|..|.++.|+.+|++++||+|+++..++||.
T Consensus 26 ~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 26 LVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 367788888899999999999999999999999999999999999999999999999999999999999999999983
No 176
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.34 E-value=4.3e-12 Score=81.23 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=66.5
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~ 222 (230)
+.+.|+..+|+.+.+.+.+++++..|+++.+++.|++++.++|+|+|..+.++.|+++|++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5678888889999999999999999999999999999999999999999999999999999999999985
No 177
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.33 E-value=3.1e-12 Score=85.96 Aligned_cols=78 Identities=17% Similarity=0.387 Sum_probs=71.4
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
..+.|.|+..+|+.+.+.+.+++++..|+..++++.|++++.++|+|.|+.|.++.|+++|++.+|++|++..+..||
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 457888888899999999999999999999999999999999999999999999999999999999999999887765
No 178
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.32 E-value=2.5e-12 Score=85.40 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=61.5
Q ss_pred eeeEEEeccCeeEeee-cCCCChHHHHHHHHHhHhCCCCCCcEEEEc--CcccC---CCcchhhhccccCCceEEEE
Q 026957 77 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~--g~~L~---d~~~L~~~~i~~~~~i~l~~ 147 (230)
|.|.|+..+|+.. +. +++++||++||++|++++|+|+++|+|.++ ++.+. |+.+|++||+.+|++|++..
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 6788999999654 77 999999999999999999999999999986 47774 68899999999999998764
No 179
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.31 E-value=7.2e-12 Score=81.60 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=66.9
Q ss_pred CEEEEEcCCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeee
Q 026957 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.|.|+..+|+ .+.+.|.+++++..|+.+.+++.|+++++++|+|+|+.|.++.|++++++.++++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 89999999999999999999999999999999999999999999999999999999875
No 180
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.31 E-value=4.9e-12 Score=87.17 Aligned_cols=81 Identities=15% Similarity=0.397 Sum_probs=75.2
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecce
Q 026957 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 153 (230)
...|.|.|+..+|+.+.+.+.+++++..|+..++++.|++++.++|+|.|+.|.++.|+++|++.+|++|+++....+|+
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999988886
Q ss_pred e
Q 026957 154 Q 154 (230)
Q Consensus 154 ~ 154 (230)
.
T Consensus 104 ~ 104 (110)
T 2k8h_A 104 E 104 (110)
T ss_dssp -
T ss_pred c
Confidence 3
No 181
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=7.9e-12 Score=85.42 Aligned_cols=74 Identities=15% Similarity=0.354 Sum_probs=70.4
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeec
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~ 74 (230)
|.|.|+..+|+.+.+.|.+++++..|+.+.+++.|++++.++|+|+|+.|.++.|+++|++.++++|++++...
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999987653
No 182
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.28 E-value=2.3e-11 Score=79.16 Aligned_cols=73 Identities=10% Similarity=0.254 Sum_probs=68.4
Q ss_pred cCceeeEEEeccCe-eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEE
Q 026957 74 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 74 ~~~~~v~v~~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (230)
...+.|.|+..+|+ .+.+.+.+++++..|+..++++.|++++.++|+|.|+.|.++.|+++|++.+|++|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35688899999995 89999999999999999999999999999999999999999999999999999999875
No 183
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.28 E-value=7.8e-12 Score=85.52 Aligned_cols=78 Identities=13% Similarity=0.317 Sum_probs=71.3
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
...|.|.|+. +|+.+.+.+..++++..|+..++++.|++++.++|+|.|+.|.++.|.++|++.+|++|++.++..||
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 3558899998 99999999999999999999999999999999999999999999999999999999999999887765
No 184
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.27 E-value=1.3e-11 Score=83.72 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=61.3
Q ss_pred EEEEEc---CCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc-------ccc-cCCCcccccccccccceeee
Q 026957 2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~---~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g-------~~l-~d~~~l~~~~i~~~~~i~l~ 70 (230)
.|+|++ .+|..+...+++++||++||.+|+..+|+|+..|+|+|.+ ..| +|..+|++|++.+|++||+.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 466665 4688999999999999999999999999999999999873 224 56789999999999999987
Q ss_pred ee
Q 026957 71 LR 72 (230)
Q Consensus 71 ~~ 72 (230)
..
T Consensus 91 d~ 92 (97)
T 1wjn_A 91 WS 92 (97)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 185
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.25 E-value=7.7e-12 Score=102.44 Aligned_cols=71 Identities=23% Similarity=0.470 Sum_probs=63.9
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE---EcCeecCCCCcccccCCCCCCEEEEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~---~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
+.+.|+ ++|+++.+++++++||.+||++|++++|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+|+-.
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 567777 5889999999999999999999999999999999999 8999999999999999999999988744
No 186
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.15 E-value=2.2e-10 Score=79.02 Aligned_cols=75 Identities=17% Similarity=0.416 Sum_probs=70.1
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~ 227 (230)
+.|.|+..+|+...+.+..++++..|+...+++.|++++.++|.|+|..+.++.|..++++.+||+|.+..++.|
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 567777778888999999999999999999999999999999999999999999999999999999999998765
No 187
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.14 E-value=2.7e-10 Score=77.24 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=57.1
Q ss_pred ccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcC-------eec-CCCCcccccCCCCCCEEEEEEE
Q 026957 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g-------~~l-~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
.+++.+...++.++||.+||.+|+..+|+|+..|+|.|.+ ..| +|.++|.+|++.+|++|++.-.
T Consensus 20 ~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 20 PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWS 92 (97)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEec
Confidence 3577889999999999999999999999999999999762 224 7889999999999999998754
No 188
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.07 E-value=2.4e-10 Score=84.82 Aligned_cols=76 Identities=12% Similarity=0.279 Sum_probs=71.3
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
+.|.|. .+|+.+.+.|..++++..|+...+++.|+++..++|.|+|..+.++.|..++++.+||+|+++..+.||+
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 556665 4788999999999999999999999999999999999999999999999999999999999999999995
No 189
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.04 E-value=7.7e-10 Score=83.86 Aligned_cols=76 Identities=13% Similarity=0.318 Sum_probs=71.1
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
+.+.|+ .+|+...+.+.+++++..|+...+++.|++++.++|.|+|+.+.++.|.+++++.+||+|++...+.||.
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 556665 4788999999999999999999999999999999999999999999999999999999999999999985
No 190
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.97 E-value=2e-09 Score=74.30 Aligned_cols=75 Identities=16% Similarity=0.375 Sum_probs=70.0
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEe
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (230)
..+.|.|+..+|..+.+.+..++++..|+...+++.|+++..++++|.|+.|.++.|.+++++.+|++|.+....
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 457888888889999999999999999999999999999999999999999999999999999999999998654
No 191
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.92 E-value=1.4e-10 Score=87.37 Aligned_cols=79 Identities=13% Similarity=0.286 Sum_probs=1.6
Q ss_pred ecceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
...+.+.| ..+|+...+.+.+++++..|++..+++.|++++.++|.|+|..+.++.|.+++++++||+|+++..+.||+
T Consensus 19 ~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~ 97 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGL 97 (227)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCc
Confidence 34466777 56788999999999999999999999999999999999999999999999999999999999999999996
No 192
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.88 E-value=1.8e-08 Score=63.30 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=63.8
Q ss_pred eEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCC-ceEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 026957 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~-~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 223 (230)
.+.+++.....+.+.++++.+|.+|-+..+.+.++|++ ..+|.|.|..|+.+.++++|++.+||.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45556666778999999999999999999999999998 89999999999999999999999999998874
No 193
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.84 E-value=7.5e-09 Score=78.46 Aligned_cols=79 Identities=13% Similarity=0.287 Sum_probs=72.8
Q ss_pred ecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 73 ~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
+...+.|.|+ .+|..+.+.+.+++++..|+...+++.|+++..++++|.|+.+.++.|.+++++.+|++|++.....+|
T Consensus 26 ~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 26 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 3456788886 488899999999999999999999999999999999999999999999999999999999999988766
No 194
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.82 E-value=4.2e-09 Score=78.26 Aligned_cols=80 Identities=11% Similarity=0.275 Sum_probs=73.5
Q ss_pred ecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 73 ~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
+...+.|+|. .+|..+.+.|.+++++..|+...+++.|+++..++++|.|+.+.++.|..++++.+|++|+++....+|
T Consensus 54 p~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 54 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp -CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred CCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3455788886 488899999999999999999999999999999999999999999999999999999999999999888
Q ss_pred e
Q 026957 153 M 153 (230)
Q Consensus 153 ~ 153 (230)
.
T Consensus 133 ~ 133 (207)
T 3tix_A 133 L 133 (207)
T ss_dssp G
T ss_pred C
Confidence 4
No 195
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.79 E-value=4.5e-09 Score=68.29 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=58.9
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecccc---c--cCCCcccccccccccceeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~---l--~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.+.|++.+| ++.+++++++|+.+|+++|++.++++++.|.+++...+ | .++.+|+++||..|+.+++.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788999876 77889999999999999999999999999888865433 3 36789999999999998875
No 196
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.78 E-value=3.9e-08 Score=61.80 Aligned_cols=71 Identities=15% Similarity=0.323 Sum_probs=64.7
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEEEcCcccCCCcchhhhccccCCceEEEE
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
+.+..+......+.+.++++.+|.+|-...+.+.+||++ .++|.|.|..|+.+.++++|++.+|+.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 455566677778999999999999999999999999999 89999999999999999999999999998764
No 197
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.67 E-value=2.4e-09 Score=80.63 Aligned_cols=82 Identities=12% Similarity=0.312 Sum_probs=1.4
Q ss_pred eeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEee
Q 026957 71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 71 ~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (230)
..+...|.|+| ..+|..+.+.+.+++++..|+...+++.|++++.+++.|+|+.+.++.|.+++++.+|++|+++....
T Consensus 16 ~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 16 VKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence 34456688888 67899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cce
Q 026957 151 GGM 153 (230)
Q Consensus 151 ~~~ 153 (230)
||.
T Consensus 95 GG~ 97 (227)
T 3v7o_A 95 GGL 97 (227)
T ss_dssp -CC
T ss_pred CCc
Confidence 885
No 198
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.61 E-value=2.1e-07 Score=62.34 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=63.8
Q ss_pred eeEEEEeccCc-eeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026957 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 153 ~~i~v~~~~~~-~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~ 222 (230)
+.+.|+..+++ .+.+.+..++++..|....+++.|++++..+|.|+|..+.++.|..++++.+||+|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 55666767774 78999999999999999999999999999999999999999999999999999999874
No 199
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.61 E-value=5.2e-08 Score=63.23 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=58.0
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcc---c--CCCcchhhhccccCCceEEE
Q 026957 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~---L--~d~~~L~~~~i~~~~~i~l~ 146 (230)
.|.+.++..+| .+.+++++++|+.+|+++|++.++++++.+.+.+...+ + .++.+|+++|++.|+.+++.
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 46788888887 57788999999999999999999999888877654433 3 47889999999999999764
No 200
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.58 E-value=2.1e-07 Score=61.59 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=45.3
Q ss_pred CCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccc--cCCCccccccc
Q 026957 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNI 61 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l--~d~~~l~~~~i 61 (230)
..+..+.+.+++++||..+|++|++.+|||+++|+|+|.|+.+ +++..-..|.-
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 3578899999999999999999999999999999999999654 44555555543
No 201
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.54 E-value=1.9e-07 Score=60.95 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=68.6
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
+||.+.|-..+++...+.+.++.++.++-+..+++.|+.++++.|.|+++.+|-+.+++..|+.+|++++++-.
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999765
No 202
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.54 E-value=2.3e-07 Score=71.45 Aligned_cols=79 Identities=13% Similarity=0.315 Sum_probs=71.9
Q ss_pred ecceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
...+.+.|.. +++...+.+..++++..|++..|++.|++++.++|.|+|..+.++.+..++.+.++|+|.+..++.||.
T Consensus 19 ~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred CCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 3445666665 677889999999999999999999999999999999999999999999999999999999999999985
No 203
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.53 E-value=5.3e-06 Score=69.48 Aligned_cols=143 Identities=23% Similarity=0.340 Sum_probs=110.8
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC----CCCCCcEEEE------cCcccCCCcchhhhccccCCceEEEE
Q 026957 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~----i~~~~q~L~~------~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
.+.|... +.+.++.++++.||.+....|.++.. .++++.-|++ .|.-|++.++|..|++.+|+.+....
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3444444 66789999999999999999988774 3677778887 33458888899999999999886654
Q ss_pred EeecceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCC-CCceEEEEcC---------eecCCCCcccccCCCCCC
Q 026957 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAG---------KQLEDGRTLADYNIQKES 217 (230)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~-~~~~~l~~~g---------~~l~d~~~L~~~~i~~~~ 217 (230)
+ .+.+.|...+|....+.++..+|+.++-..|+.+.|+. .+.+-|.+.. .-|+..+++.+.+.....
T Consensus 84 ~---~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~ 160 (371)
T 3ivf_A 84 K---QRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHE 160 (371)
T ss_dssp C---EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTC
T ss_pred c---eeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCc
Confidence 3 36788999999999999999999999999999999974 4556676421 235667788887776667
Q ss_pred EEEEEEE
Q 026957 218 TLHLVLR 224 (230)
Q Consensus 218 ~i~~~~~ 224 (230)
++++..|
T Consensus 161 ~l~frvK 167 (371)
T 3ivf_A 161 TLLLRRK 167 (371)
T ss_dssp EEEEEEC
T ss_pred eEEEEEE
Confidence 7666544
No 204
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.50 E-value=6.2e-07 Score=60.03 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=66.5
Q ss_pred cCceeeEEEeccCe-eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEE
Q 026957 74 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 74 ~~~~~v~v~~~~g~-~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (230)
...+.|.|+..+|. .+.+.+..+++...|....+++.+++++..++.|.|..+.++.|..++++.+|++|.+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34577888888884 78999999999999999999999999999999999999999999999999999999764
No 205
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.45 E-value=2.2e-08 Score=82.28 Aligned_cols=79 Identities=13% Similarity=0.301 Sum_probs=0.4
Q ss_pred ecceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 150 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
..-+.+.|+. .|+...+.+..++++..|++..+++.|++++.++|.|+|..+.++.|.+++++++||+|.+..++.||.
T Consensus 19 ~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 3445666665 577889999999999999999999999999999999999999999999999999999999999999983
No 206
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.41 E-value=1.2e-06 Score=57.76 Aligned_cols=71 Identities=14% Similarity=0.290 Sum_probs=64.7
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
+.+.|+ ..|....+.+..++....|....+++.|++++..+|.|+|..+.++.|.+++++.+||+|.++.-
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 455666 46888999999999999999999999999999999999999999999999999999999998764
No 207
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.30 E-value=3.4e-06 Score=55.04 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=67.8
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEE
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (230)
.+|.|.|-..+++...+.+.++.++.++-+..++++|+.+++..|.|+++.++-+.+++-.|+.+|+.+.++..
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 45788888899999999999999999999999999999999999999999999999999999999999988654
No 208
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.29 E-value=3e-05 Score=64.82 Aligned_cols=133 Identities=24% Similarity=0.366 Sum_probs=102.8
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhC----CCCCceEEEec------cccccCCCcccccccccccceeeeeeecCceee
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~g----i~~~~q~l~~~------g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v 79 (230)
+-+.++.++|+.||.|+...|.++.. .+.++--|++. |.=|+++++|..|++.+++.+.....+ +.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~---~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ---RPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECE---EEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCce---eEE
Confidence 77889999999999999999977764 35677788873 233788899999999999988776544 688
Q ss_pred EEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEEEcC---------cccCCCcchhhhccccCCceEE
Q 026957 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG---------KQLEDGRTLADYNIQKESTLHL 145 (230)
Q Consensus 80 ~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g---------~~L~d~~~L~~~~i~~~~~i~l 145 (230)
.|..++|....+.++..+|+.++-+.|+++.|+... ..-|.+.. .-|+.++++.+.+.....++++
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEE
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEE
Confidence 899999999999999999999999999999997643 34555422 2355566777665544444443
No 209
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.27 E-value=1e-07 Score=78.31 Aligned_cols=83 Identities=13% Similarity=0.317 Sum_probs=0.5
Q ss_pred eeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEe
Q 026957 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 70 ~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (230)
...+...+.++|+. +|+.+.+.+..++++..|+...+++.|++++.+++.|.|+.+.++.|.+++++.+|++|++....
T Consensus 15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence 34455667888876 67788999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecce
Q 026957 150 RGGM 153 (230)
Q Consensus 150 ~~~~ 153 (230)
.+||
T Consensus 94 ~g~~ 97 (360)
T 3ix6_A 94 IGGM 97 (360)
T ss_dssp ---C
T ss_pred CchH
Confidence 8885
No 210
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.26 E-value=5.7e-06 Score=54.46 Aligned_cols=72 Identities=14% Similarity=0.271 Sum_probs=66.4
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEE
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
..+.+.|+ .+|....+.+..++....|....+++.|++++..++.|.|..+.++.|.++.++.+|++|.++.
T Consensus 20 ~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 20 RLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 34778887 4688899999999999999999999999999999999999999999999999999999998875
No 211
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.18 E-value=3.4e-06 Score=64.88 Aligned_cols=82 Identities=12% Similarity=0.303 Sum_probs=72.0
Q ss_pred eeeecCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEe
Q 026957 70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (230)
Q Consensus 70 ~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (230)
.+.+...+.|+|.. +++.+.+.+..+++...|+...+++.|++++.+++.|.|+.+.++.+..+..+.++++|.+....
T Consensus 15 ~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (209)
T ss_dssp ---CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSC
T ss_pred eeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccc
Confidence 34455667888876 77788999999999999999999999999999999999999999999999999999999998776
Q ss_pred ecc
Q 026957 150 RGG 152 (230)
Q Consensus 150 ~~~ 152 (230)
.+|
T Consensus 94 ~Gg 96 (209)
T 3uf8_A 94 IGG 96 (209)
T ss_dssp TTC
T ss_pred ccc
Confidence 664
No 212
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.18 E-value=2.1e-07 Score=78.51 Aligned_cols=76 Identities=12% Similarity=0.338 Sum_probs=0.0
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
+.+.|+. .++...+.+..++++..|++..+++.|+++..++|.|+|+.+.++.|..++++.+|++|.+...+.||.
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 4455554 567888999999999999999999999999999999999999999999999999999999999999984
No 213
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.12 E-value=4.7e-06 Score=55.10 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=47.1
Q ss_pred eccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcc--cCCCcchhhhcc
Q 026957 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYNI 137 (230)
Q Consensus 83 ~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~--L~d~~~L~~~~i 137 (230)
...+..+.+.+.+.+|+..+|++|++++|||+.+|+|+|.|+. |+.+.+...|.-
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 3567889999999999999999999999999999999999965 456666666654
No 214
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.07 E-value=5.7e-06 Score=57.96 Aligned_cols=69 Identities=28% Similarity=0.393 Sum_probs=57.0
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-------------------------------------ceEEEe
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLIF 45 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-------------------------------------~q~l~~ 45 (230)
+.|+.++|...++.|+.+.||.+++..|++..||+.. +|+|..
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~ 93 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence 7899999999999999999999999999999999955 333322
Q ss_pred --ccccccCCCcccccccccccceeeee
Q 026957 46 --AGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 46 --~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
.+.-|++..+|.++||.+++++.|.-
T Consensus 94 dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 94 DDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp SSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred cCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 11346778999999999999976653
No 215
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.06 E-value=0.00015 Score=63.37 Aligned_cols=183 Identities=11% Similarity=0.208 Sum_probs=128.5
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc-c------c-ccC-----CCcccccccccccceeeeeee------
Q 026957 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-K------Q-LED-----GRTLADYNIQKESTLHLVLRL------ 73 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g-~------~-l~d-----~~~l~~~~i~~~~~i~l~~~~------ 73 (230)
.++.|...+|+.++|+.|.+.+|+|+++|||+... + + +.+ ..++.++.- .++.+.+.+..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~~ 116 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPELA 116 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHHH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccccC
Confidence 46899999999999999999999999999998542 1 0 111 112322211 22233333211
Q ss_pred -----------cCceeeEEEecc--CeeE----eeecCCCChHHHHHHHHHhHhCCCCCCcEEEEc------CcccC-CC
Q 026957 74 -----------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DG 129 (230)
Q Consensus 74 -----------~~~~~v~v~~~~--g~~~----~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~------g~~L~-d~ 129 (230)
.+.+.|+++..+ .+++ .+-++.+++|+++-..|.+..|+|++.-..+|. ...|+ .+
T Consensus 117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~ 196 (530)
T 2ylm_A 117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD 196 (530)
T ss_dssp TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence 123666776543 3333 356888999999999999999999986555454 24566 57
Q ss_pred cchhhh--ccccCCceEEEEEee-c-----------------ceeEEEEe---ccCceeEEEeeccchHHHHHHhhcccc
Q 026957 130 RTLADY--NIQKESTLHLVLRLR-G-----------------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKE 186 (230)
Q Consensus 130 ~~L~~~--~i~~~~~i~l~~~~~-~-----------------~~~i~v~~---~~~~~~~~~v~~~~tv~~lK~~i~~~~ 186 (230)
.|+.+. .+.+|+.|.+..... . .+.+..+. .+...|.++++...|-.++-++|.+..
T Consensus 197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l 276 (530)
T 2ylm_A 197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL 276 (530)
T ss_dssp SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence 899999 999999987765433 1 13344442 235669999999999999999999999
Q ss_pred CCCCCceEEE
Q 026957 187 GIPPDQQRLI 196 (230)
Q Consensus 187 ~~~~~~~~l~ 196 (230)
++.|...||.
T Consensus 277 ~~dP~~lRf~ 286 (530)
T 2ylm_A 277 NTDPMLLQFF 286 (530)
T ss_dssp TSCGGGEEEE
T ss_pred CCCchhEEEE
Confidence 9999998886
No 216
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.99 E-value=9e-06 Score=56.95 Aligned_cols=71 Identities=25% Similarity=0.380 Sum_probs=58.1
Q ss_pred eEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCC-ceEEEE-----------------------------------
Q 026957 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF----------------------------------- 197 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~-~~~l~~----------------------------------- 197 (230)
.+.|+.++|+..++.|+.+.||.+++..||.+.|++.. .+-|..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58899999999999999999999999999999998633 333331
Q ss_pred ---cCeecCCCCcccccCCCCCCEEEEEEE
Q 026957 198 ---AGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 198 ---~g~~l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
.+.-|+++++|.++||.++++|.+-.|
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 114568899999999999999876654
No 217
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.87 E-value=1.9e-06 Score=72.66 Aligned_cols=82 Identities=11% Similarity=0.320 Sum_probs=0.0
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeeccee
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~ 154 (230)
..+.|+|.. ++....+.+..+++...|+...+++.|+++..+++.|+|+.+.++.|..++++.+|++|.+.....+|..
T Consensus 29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n 107 (389)
T 4da1_A 29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN 107 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence 446677765 6778889999999999999999999999999999999999999999999999999999999998887754
Q ss_pred EEE
Q 026957 155 IFV 157 (230)
Q Consensus 155 i~v 157 (230)
...
T Consensus 108 ~~~ 110 (389)
T 4da1_A 108 LYF 110 (389)
T ss_dssp ---
T ss_pred cce
Confidence 444
No 218
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.77 E-value=0.00013 Score=47.45 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=59.5
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE--EcCeec---CCCCcccccCCCCCCEEEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l---~d~~~L~~~~i~~~~~i~~~~ 223 (230)
..|.++..+|+.+.-.++.++|+.+|...|.. .+.++..+.|. |..+.+ +.+++|.+.|+.++++|.+--
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 45778888999999999999999999999988 56777888988 666777 567999999999999998753
No 219
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.73 E-value=8.3e-05 Score=47.78 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=55.6
Q ss_pred EEEEEc--CCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc---eEEE--eccccccCCCcccccccccccceee
Q 026957 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ---QRLI--FAGKQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 2 ~v~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~---q~l~--~~g~~l~d~~~l~~~~i~~~~~i~l 69 (230)
.|++.. ..|+.+.++++...|+.+|++.+.+..+++... -.+. =.+..|.++..|++|++.+|+.+.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 466664 689999999999999999999999999988531 1222 3467799999999999999998764
No 220
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.70 E-value=0.00011 Score=47.19 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=52.3
Q ss_pred ccCceeEEEeeccchHHHHHHhhccccCCCC--Cc-e--EEEEcCeecCCCCcccccCCCCCCEEEE
Q 026957 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQ-Q--RLIFAGKQLEDGRTLADYNIQKESTLHL 221 (230)
Q Consensus 160 ~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~--~~-~--~l~~~g~~l~d~~~L~~~~i~~~~~i~~ 221 (230)
..++.+.++++...|+.+|.+.+.+..+++. .. + +..-++..|.++..|++|+|.+||.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4689999999999999999999999888643 22 3 4446778999999999999999999875
No 221
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.60 E-value=0.00039 Score=45.17 Aligned_cols=68 Identities=19% Similarity=0.383 Sum_probs=57.4
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--eccccc---cCCCcccccccccccceeee
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l---~d~~~l~~~~i~~~~~i~l~ 70 (230)
+|-|+..+|..+.-....++||.+|...|.. .+.++....|. |-.+.+ +.+.||.+.|+.+.+++.+-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5789999999999999999999999999998 67777777777 446777 34689999999998887764
No 222
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.51 E-value=0.017 Score=50.49 Aligned_cols=210 Identities=10% Similarity=0.120 Sum_probs=142.0
Q ss_pred EEEEEcCCC--cEE----EEEecCCCcHHHHHHHhhhhhCCCCCceEEEec------ccccc-CCCccccc--ccccccc
Q 026957 2 QIFVKTLTG--KTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DGRTLADY--NIQKEST 66 (230)
Q Consensus 2 ~v~v~~~~g--~~~----~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~------g~~l~-d~~~l~~~--~i~~~~~ 66 (230)
.||+|..+- .++ .+.++..++|.+|-..|.+..|+|++....+|. ...|+ .+.|+.+. .+.+|+.
T Consensus 132 LlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdI 211 (530)
T 2ylm_A 132 MLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDI 211 (530)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEE
T ss_pred EEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCE
Confidence 466776642 232 367899999999999999999999988777775 35577 67899999 9999998
Q ss_pred eeeeeeec------------------CceeeEEEe---ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-Ec--
Q 026957 67 LHLVLRLR------------------GGMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FA-- 122 (230)
Q Consensus 67 i~l~~~~~------------------~~~~v~v~~---~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~-- 122 (230)
|..-.... ..+.|.++. .+...+.+.++...|-.++-++|+++.+++|...++. .+
T Consensus 212 I~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~ 291 (530)
T 2ylm_A 212 IVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGY 291 (530)
T ss_dssp EEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTT
T ss_pred EEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccc
Confidence 87655432 124555553 2356689999999999999999999999999998886 21
Q ss_pred -Cc---c--cCCCcchhhhccccC----CceEEEE-Ee-------ecceeEEEEeccCc--eeEEEeeccchHHHHHHhh
Q 026957 123 -GK---Q--LEDGRTLADYNIQKE----STLHLVL-RL-------RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKI 182 (230)
Q Consensus 123 -g~---~--L~d~~~L~~~~i~~~----~~i~l~~-~~-------~~~~~i~v~~~~~~--~~~~~v~~~~tv~~lK~~i 182 (230)
+. . ...+.+|.+.=.... +.++..+ .. ...+.+.....+.+ .+.+-++.+.||.+|-+.+
T Consensus 292 ~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l 371 (530)
T 2ylm_A 292 RDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEEC 371 (530)
T ss_dssp SCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHH
T ss_pred cCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHH
Confidence 22 1 233456665432211 2222211 10 11233433333222 5667788899999999999
Q ss_pred ccccCCC---CCceEEE--EcCe---ecCCCCccccc
Q 026957 183 QDKEGIP---PDQQRLI--FAGK---QLEDGRTLADY 211 (230)
Q Consensus 183 ~~~~~~~---~~~~~l~--~~g~---~l~d~~~L~~~ 211 (230)
..+.+++ ....++. ++++ .++++.++...
T Consensus 372 ~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i 408 (530)
T 2ylm_A 372 KKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECL 408 (530)
T ss_dssp HTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred HHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccc
Confidence 9999886 3567775 7774 45666677654
No 223
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.43 E-value=0.00068 Score=47.42 Aligned_cols=72 Identities=19% Similarity=0.332 Sum_probs=61.0
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCccc--CC-CcchhhhccccCCceEEE
Q 026957 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLV 146 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L--~d-~~~L~~~~i~~~~~i~l~ 146 (230)
.+...|.|+.++|..+.-.+..++||.+|..-|... +.++....|+ |..+.+ .| +.+|.+.|+.+.+++.+.
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 456789999999999999999999999999999887 7777788887 567777 33 789999999998888665
No 224
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.29 E-value=0.00092 Score=45.67 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=61.2
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE--EcCeecC---CCCcccccCCCCCCEEEEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l~---d~~~L~~~~i~~~~~i~~~~~ 224 (230)
..|.++..+|+.+.-.++.++|+.++...|....+.+...+.|. |..+.+. .+++|.+.|+.+.++|.+..+
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 46788888999999999999999999999999877777788887 6677774 478999999999998877654
No 225
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.21 E-value=0.00075 Score=47.21 Aligned_cols=70 Identities=19% Similarity=0.336 Sum_probs=59.6
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE--EcCeec---CCCCcccccCCCCCCEEEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 223 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l---~d~~~L~~~~i~~~~~i~~~~ 223 (230)
..|.++..+|+.+.-.++.++|+.+|...|... +.++..+.|+ |..+.+ +.+++|.+.|+.+.+.|.+..
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 567888889999999999999999999999887 7777888888 667777 457999999999988887654
No 226
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.18 E-value=0.0024 Score=43.56 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=58.7
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE--ecccccc---CCCcccccccccccceeeee
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~--~~g~~l~---d~~~l~~~~i~~~~~i~l~~ 71 (230)
+|-|+..+|..+.-.+..++||.+|.+.|....+.+.....|. |-.+.+. .+.||.+.|+.+.+++.+..
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 5789999999999999999999999999999988776666666 4567775 36899999999988877654
No 227
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.92 E-value=0.0035 Score=39.95 Aligned_cols=66 Identities=12% Similarity=0.224 Sum_probs=57.9
Q ss_pred cCceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE---cCcccCCCcchhhhcccc
Q 026957 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 139 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~---~g~~L~d~~~L~~~~i~~ 139 (230)
...+++.|+....++.-+.|++..+..+|--.|+++..+.+....|.. .+.+|+-+++|.+|||++
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 345677788888888999999999999999999999999999998884 346788899999999986
No 228
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.90 E-value=0.016 Score=44.91 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=55.7
Q ss_pred eEEEeeccchHHHHHHhhccccCCCCC-ceEEE-EcC----eecC-CCCcccccCCCCCCEEEEEEEecCCCC
Q 026957 165 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FAG----KQLE-DGRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 165 ~~~~v~~~~tv~~lK~~i~~~~~~~~~-~~~l~-~~g----~~l~-d~~~L~~~~i~~~~~i~~~~~~~~g~~ 230 (230)
+.+.+...+|+.+|++.++...+++++ ..||- +.+ ..|. .+++|.++++.+|..|.+-.|-.+|.|
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~W 226 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTW 226 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSCC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence 456778899999999999999999887 68886 332 4565 468999999999999999999999876
No 229
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.89 E-value=0.0052 Score=38.71 Aligned_cols=61 Identities=11% Similarity=0.289 Sum_probs=49.3
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
|+|+|+..+.....++++++.||++|-+ ..|+|++.-....||+.+..+. +.+|+++.++-
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEE
Confidence 8999999966667799999999999888 8999998887778998887666 22477776653
No 230
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.87 E-value=0.0019 Score=41.19 Aligned_cols=63 Identities=13% Similarity=0.244 Sum_probs=55.7
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEE---cCeecCCCCcccccCCCC
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 215 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~---~g~~l~d~~~L~~~~i~~ 215 (230)
+.+.|+....+...+.|++..+.++|--.||++..+.|+...|.. .+..|+-+++|.+|||++
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 556777777888999999999999999999999999999998873 457899999999999987
No 231
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.75 E-value=0.006 Score=41.54 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=58.2
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE--EcCeecC--CCCcccccCCCCCCEEEEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l~--d~~~L~~~~i~~~~~i~~~~~ 224 (230)
..|.++..+|+.+.-.++.++||.+|...|... +..+..+.|. |..+.+. .++||.+.|+.+.++|.+.-+
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 457778888999999999999999999999865 5566778887 6677774 579999999999999977554
No 232
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.65 E-value=0.0043 Score=47.75 Aligned_cols=67 Identities=22% Similarity=0.419 Sum_probs=55.0
Q ss_pred eeEEEeeccchHHHHHHhhccccCCCCC-ceEEE--E-cC--eecCC-CCcccccCCCCCCEEEEEEEecCCCC
Q 026957 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AG--KQLED-GRTLADYNIQKESTLHLVLRLRGGDF 230 (230)
Q Consensus 164 ~~~~~v~~~~tv~~lK~~i~~~~~~~~~-~~~l~--~-~g--~~l~d-~~~L~~~~i~~~~~i~~~~~~~~g~~ 230 (230)
.+.+.+...+|+.+|++.+++..+++++ ..||- + .+ ..|+| +++|.++++.+|..|.+-.|..+|.|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~W 214 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGTW 214 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-CC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCCC
Confidence 3567788999999999999999999986 68875 2 22 35554 68999999999999999999999876
No 233
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.53 E-value=0.011 Score=40.32 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=57.8
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE--EcCcccC--CCcchhhhccccCCceEEEE
Q 026957 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~--d~~~L~~~~i~~~~~i~l~~ 147 (230)
...|.|+.++|+.+.-.+..++||.+|..-|... +..+....|. |-.+.+. .+.||.+.|+.+.+++.+..
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4688899999998888999999999999999865 5556677776 5567775 47899999999988886643
No 234
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.23 E-value=0.014 Score=40.88 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=55.9
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHh-CCCCCCcEEE--EcCcccCC-CcchhhhccccCCce
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 143 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~--~~g~~L~d-~~~L~~~~i~~~~~i 143 (230)
+...|.|+..+|..+.-.++.++||.+|.+-|.... +.......|+ |-.+.+.| +.||.+.|+.+...+
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 457889999999999999999999999999998864 3555667776 56677865 689999999985543
No 235
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.18 E-value=0.0077 Score=42.20 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=53.7
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhcccc-CCCCCceEEE--EcCeecC-CCCcccccCCCCCCEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLE-DGRTLADYNIQKESTL 219 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~-~~~~~~~~l~--~~g~~l~-d~~~L~~~~i~~~~~i 219 (230)
..|.++..+|+.+.-.++.++||.+|+..|.... +.....+.|+ |..+.+. ++++|.+.|+.+.+.|
T Consensus 53 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 4577788889999999999999999999998863 3455678887 6678885 5799999999985544
No 236
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.78 E-value=0.16 Score=31.29 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=47.2
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+|.+.+.... ....++++...|+.+|.+.+ ++++....+..||.....+. -+++||.|.+.--..||
T Consensus 4 ~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 3556655322 23456777778999999877 45667777779998886554 68899999887666655
No 237
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.66 E-value=0.047 Score=36.91 Aligned_cols=62 Identities=37% Similarity=0.455 Sum_probs=43.5
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhh--CCCC------CceEEEec----cccccC-------------CCcccccccccc
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIFA----GKQLED-------------GRTLADYNIQKE 64 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~--gi~~------~~q~l~~~----g~~l~d-------------~~~l~~~~i~~~ 64 (230)
+..+++.|-..|||.++|+||-+.. |.|. +...|-|. |+.|.| =.||++|++.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568889999999999999998763 5553 34456652 344443 268999999999
Q ss_pred cceeeee
Q 026957 65 STLHLVL 71 (230)
Q Consensus 65 ~~i~l~~ 71 (230)
+++.+..
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9988764
No 238
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=95.61 E-value=0.036 Score=42.50 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=51.4
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEE-Ec-C---cccCC-CcchhhhccccCCceEEEEEeec
Q 026957 88 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FA-G---KQLED-GRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~-~~-g---~~L~d-~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
.+.+.++..+|+.+|++.+++.++++++ ..||. +. . ..|++ +.+|.++++.++..|-+-.+...
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~d 211 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNED 211 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 3567889999999999999999999997 68876 22 2 34655 57999999999999877766543
No 239
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=95.39 E-value=0.052 Score=34.42 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=53.1
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
..-.++=.+++..||+.++.+.|++-+.-.+++++..|+++++|.+.++.....+.+.+..
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3446677889999999999999999999999999888999999999999988887776543
No 240
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.31 E-value=0.078 Score=35.86 Aligned_cols=62 Identities=40% Similarity=0.545 Sum_probs=43.2
Q ss_pred CeeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEEc-C---cccCC-------------CcchhhhccccC
Q 026957 86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---KQLED-------------GRTLADYNIQKE 140 (230)
Q Consensus 86 g~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~~L~d-------------~~~L~~~~i~~~ 140 (230)
+..+++.+-..+||.++|++|-+.. |.| ++.+.|-|. | +.|.| =.||+.|++++|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568888889999999999997653 333 455667652 2 33433 148999999999
Q ss_pred CceEEEE
Q 026957 141 STLHLVL 147 (230)
Q Consensus 141 ~~i~l~~ 147 (230)
+++.+..
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9997754
No 241
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.25 E-value=0.09 Score=36.88 Aligned_cols=65 Identities=32% Similarity=0.525 Sum_probs=47.2
Q ss_pred CceeEEEeeccchHHHHHHhhcccc--CCC------CCceEEEE----cCe-ecCCC-------------CcccccCCCC
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~--~~~------~~~~~l~~----~g~-~l~d~-------------~~L~~~~i~~ 215 (230)
...+++.|-..+||.++|++|-+.. |.| ++..-|.| .|+ .|.|. .||+.|+|++
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 3678899999999999999997654 444 34566665 233 35432 3899999999
Q ss_pred CCEEEEEEEec
Q 026957 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 ~~~i~~~~~~~ 226 (230)
|+++.++-|..
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99999988754
No 242
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=95.21 E-value=0.11 Score=32.89 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=52.7
Q ss_pred eEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEe
Q 026957 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 165 ~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 225 (230)
+.-.++-+.++..||+.++.+.+++.+.+.++..+..|+++++|-+.+++-...+-+.+..
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3445677889999999999999999999999888888999999999999988877777653
No 243
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.16 E-value=0.078 Score=37.20 Aligned_cols=64 Identities=31% Similarity=0.524 Sum_probs=45.4
Q ss_pred eeEeeecCCCChHHHHHHHHHhHh--CCC------CCCcEEEE-c---Cc-ccCCC-------------cchhhhccccC
Q 026957 87 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLEDG-------------RTLADYNIQKE 140 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~-~---g~-~L~d~-------------~~L~~~~i~~~ 140 (230)
..+++.|-..+||.++|++|-+.. +.| ++..-|-| . |+ .|.|. .||+.|++++|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 568899999999999999998754 343 34455655 1 22 24442 38999999999
Q ss_pred CceEEEEEee
Q 026957 141 STLHLVLRLR 150 (230)
Q Consensus 141 ~~i~l~~~~~ 150 (230)
+++.++.+..
T Consensus 121 a~l~l~~~~~ 130 (138)
T 2r2o_A 121 ATVALVPCLT 130 (138)
T ss_dssp CEEEEEEC--
T ss_pred CEEEEEECCC
Confidence 9998876543
No 244
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=95.09 E-value=0.061 Score=41.65 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=51.3
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCC-CcEEEE-cC----cccCC-CcchhhhccccCCceEEEEEeecc
Q 026957 89 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-AG----KQLED-GRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~-~g----~~L~d-~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
+.+.++..+|+.+|++.+++.++++++ ..||.. .+ ..|.| +.+|.++++.++..|-+-.+...|
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 556789999999999999999999997 688873 32 34655 689999999999998777665433
No 245
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.00 E-value=0.053 Score=34.01 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=47.6
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
|+|+|+........+++++..||++|-+. .++|++......||+.+..+. +.+|+.|.+.--..+|
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 56677666444556899999999998754 789999997778998886555 3358888776444444
No 246
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=94.83 E-value=0.071 Score=34.13 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=37.8
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
.|.|... .++.|+++++.+..+|.++|.++.++|++.-.|.|.-
T Consensus 7 ~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 7 TLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 3445443 8999999999999999999999999999888999864
No 247
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.62 E-value=0.3 Score=33.72 Aligned_cols=65 Identities=28% Similarity=0.395 Sum_probs=46.5
Q ss_pred cCceeEEEeeccchHHHHHHhhcccc--CCC------CCceEEEE-cC---e-ecCCC-------------CcccccCCC
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLEDG-------------RTLADYNIQ 214 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~--~~~------~~~~~l~~-~g---~-~l~d~-------------~~L~~~~i~ 214 (230)
++..+++.+-..+||.++|++|-+.. +.| ++.+.|.| .| + .|.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34568888888999999999996643 333 35667775 22 3 24431 589999999
Q ss_pred CCCEEEEEEEe
Q 026957 215 KESTLHLVLRL 225 (230)
Q Consensus 215 ~~~~i~~~~~~ 225 (230)
+|+++.+..+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999987653
No 248
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.54 E-value=0.2 Score=30.88 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=46.3
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEee
Q 026957 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (230)
.|+|.++...+ ...++++...||++|.+.+ ++++....+..||.....+. -+++|+.|.+.....
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~ 68 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIY 68 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTT
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccc
Confidence 46777765433 2356777778999999876 56777777778998886554 688899998765443
No 249
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=94.45 E-value=0.097 Score=33.49 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=39.9
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCc
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
+.|+|... .++.+.+++..+..+|.++|+++.++|++...|.|...
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 56666644 58999999999999999999999999999999998763
No 250
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.41 E-value=0.26 Score=34.05 Aligned_cols=65 Identities=26% Similarity=0.380 Sum_probs=47.4
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhh--hCCCC------CceEEEec-c---cc-ccC-------------CCcccccccc
Q 026957 9 TGKTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIFA-G---KQ-LED-------------GRTLADYNIQ 62 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~--~gi~~------~~q~l~~~-g---~~-l~d-------------~~~l~~~~i~ 62 (230)
++...++.|-..|||.++|+||-+. .|.|. +...|-|. | +. |.| -.||+.|++.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4567889999999999999999876 34553 45556652 2 22 433 2689999999
Q ss_pred cccceeeeeee
Q 026957 63 KESTLHLVLRL 73 (230)
Q Consensus 63 ~~~~i~l~~~~ 73 (230)
+|+++.+..+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999887543
No 251
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=93.38 E-value=0.28 Score=31.67 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=44.1
Q ss_pred cCceeEEEeecc-chHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 161 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~-~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+|+. ++++.. .|+.+|.+.+ ++++....+..||..... ....+.-+++||.|.++--..||
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEEECCC-
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEcccccC
Confidence 4554 345565 7999998876 466777777799988764 35666789999999888766665
No 252
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=93.10 E-value=0.36 Score=29.97 Aligned_cols=68 Identities=12% Similarity=0.267 Sum_probs=45.5
Q ss_pred CEEEEEcCCCcE-EEEEecCCCcHHHHHHHhhhhhCCCC--CceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.|.|+....-. -++++ ...||.+|.+.+....++.. ..-.+..||+.+.+ .+..+.+|+++.+....
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPV 71 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCB
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCC
Confidence 788888885422 35677 67899999999987544332 23355567776443 34568888888876543
No 253
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.08 E-value=0.62 Score=30.60 Aligned_cols=73 Identities=14% Similarity=0.322 Sum_probs=47.0
Q ss_pred cceeEEEEecc------C-ceeEEEeeccchHHHHHHhhccccC-C----------CCCceEEEEcCeecCCCCcccccC
Q 026957 151 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 212 (230)
Q Consensus 151 ~~~~i~v~~~~------~-~~~~~~v~~~~tv~~lK~~i~~~~~-~----------~~~~~~l~~~g~~l~d~~~L~~~~ 212 (230)
+.|.+.|+... | ....++++...||.+|.+.+...+. + ......+..||+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 34556666532 3 3566777778899999999877641 1 1244567788877653 567
Q ss_pred CCCCCEEEEEEEecCC
Q 026957 213 IQKESTLHLVLRLRGG 228 (230)
Q Consensus 213 i~~~~~i~~~~~~~~g 228 (230)
+++||.|.+.--..||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 8999999887655555
No 254
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=93.07 E-value=0.1 Score=36.58 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=31.3
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec
Q 026957 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~ 46 (230)
.++.|...+|+.+++..|.+.+|+|+++|+|...
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4678899999999999999999999999999964
No 255
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.02 E-value=0.24 Score=33.83 Aligned_cols=64 Identities=31% Similarity=0.480 Sum_probs=45.6
Q ss_pred CceeEEEeeccchHHHHHHhhcccc--CCC------CCceEEEE-cC---e-ecCC--C-----------CcccccCCCC
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLED--G-----------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~--~~~------~~~~~l~~-~g---~-~l~d--~-----------~~L~~~~i~~ 215 (230)
...+++.|-..+||.++|++|-... +.| ++.+.|.| .| + .|.| . .||++|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 4457788888999999999996643 443 34556665 23 2 2332 1 4889999999
Q ss_pred CCEEEEEEEe
Q 026957 216 ESTLHLVLRL 225 (230)
Q Consensus 216 ~~~i~~~~~~ 225 (230)
|+++.+..|+
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998775
No 256
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.00 E-value=0.61 Score=30.64 Aligned_cols=71 Identities=11% Similarity=0.269 Sum_probs=47.6
Q ss_pred CceeeEEEecc------C-eeEeeecCCCChHHHHHHHHHhHhC-C----------CCCCcEEEEcCcccCCCcchhhhc
Q 026957 75 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 136 (230)
Q Consensus 75 ~~~~v~v~~~~------g-~~~~i~v~~~~tV~~lK~~i~~~~~-i----------~~~~q~L~~~g~~L~d~~~L~~~~ 136 (230)
..|.|.|+... | ....++++...||++|.+.+..... + ......+..||+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 45677776642 3 3567788788899999999987642 1 1234567788887653 567
Q ss_pred cccCCceEEEEEee
Q 026957 137 IQKESTLHLVLRLR 150 (230)
Q Consensus 137 i~~~~~i~l~~~~~ 150 (230)
+++|+.|.+.....
T Consensus 83 L~dGDeV~i~ppv~ 96 (98)
T 1vjk_A 83 LKDGDVVGVFPPVS 96 (98)
T ss_dssp CCTTCEEEEESCC-
T ss_pred CCCCCEEEEECCCC
Confidence 88999987764433
No 257
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=92.62 E-value=0.22 Score=31.05 Aligned_cols=61 Identities=5% Similarity=0.108 Sum_probs=45.2
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
|.|+| +|+.+.+ +..||.+|-+ ..|+++..-.+..||..+. .....++-+.+|++|.++..
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVp-r~~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMT----ELDCTGGHFAVALNYDVVP-RGKWDETPVTAGDEIEILTP 61 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHH----HTTCCSSSCEEEESSSEEC-HHHHTTCBCCTTCEEEEECC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHH----HcCCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEEcc
Confidence 55555 7776554 6799999987 6788888777788998774 34566677889999888654
No 258
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=92.30 E-value=0.4 Score=30.93 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=45.0
Q ss_pred CceeeEEEeccCeeEeeecCCC-ChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeec
Q 026957 75 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~-~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
..|.|.+ +|+. ++++.. .||.+|.+.+ ++++....+..||..+..+ ...+.-+++|+.|.++....+
T Consensus 19 ~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~G 86 (87)
T 1tyg_B 19 GRHMLQL---NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGG 86 (87)
T ss_dssp ---CEEE---TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC
T ss_pred cceEEEE---CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEccccc
Confidence 3455555 4654 455666 8999998876 5777777777888877443 355667999999988765444
No 259
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=92.29 E-value=0.38 Score=32.83 Aligned_cols=63 Identities=32% Similarity=0.490 Sum_probs=45.1
Q ss_pred cEEEEEecCCCcHHHHHHHhhhh--hCCCCC------ceEEEec-c---c-cccC-------------CCcccccccccc
Q 026957 11 KTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIFA-G---K-QLED-------------GRTLADYNIQKE 64 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~--~gi~~~------~q~l~~~-g---~-~l~d-------------~~~l~~~~i~~~ 64 (230)
...++.|-..|||.++|+||-+. .|.|.+ ...|-|. | + .|.| =.||++|++.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 45888999999999999999876 355543 3455552 2 2 1333 268999999999
Q ss_pred cceeeeeee
Q 026957 65 STLHLVLRL 73 (230)
Q Consensus 65 ~~i~l~~~~ 73 (230)
+++.++.+.
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999887653
No 260
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=92.23 E-value=0.41 Score=30.19 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=46.0
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCC-CCceEEEeccccccCCCcccccccccccceeeeeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
|.|+| +|+.+.+....+.||.+|-+ ..|++ +..-.+.+||..+. .....++-+.+|++|.++-..
T Consensus 1 M~I~v---NGe~~e~~~~~~~Tl~~LL~----~l~~~~~~~vAVavNg~iVp-r~~~~~~~L~dGD~IEIv~~V 66 (78)
T 2k5p_A 1 MNLTV---NGKPSTVDGAESLNVTELLS----ALKVAQAEYVTVELNGEVLE-REAFDATTVKDGDAVEFLYFM 66 (78)
T ss_dssp CEEEE---TTEEEECSSCSCEEHHHHHH----HHTCSCTTTCCEEETTEECC-TTHHHHCEECSSBCEEECCCC
T ss_pred CEEEE---CCEEEEcCCCCCCcHHHHHH----HcCCCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEEeee
Confidence 56655 77755442216789999988 56788 77777778998774 445667778899998886543
No 261
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=92.09 E-value=0.64 Score=31.97 Aligned_cols=60 Identities=35% Similarity=0.523 Sum_probs=41.8
Q ss_pred cEEEEEecCCCcHHHHHHHhhhh----hCCCCC----ceEEEec-c---ccc----------cC----CCcccccccccc
Q 026957 11 KTITLEVESSDTIDNVKAKIQDK----EGIPPD----QQRLIFA-G---KQL----------ED----GRTLADYNIQKE 64 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~----~gi~~~----~q~l~~~-g---~~l----------~d----~~~l~~~~i~~~ 64 (230)
..+++.+-..|||.++|+||-+. .|.|.+ ...|-|. | ..| ++ -.||+.|++.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46889999999999999998765 377653 3344441 2 112 22 257888999999
Q ss_pred cceeee
Q 026957 65 STLHLV 70 (230)
Q Consensus 65 ~~i~l~ 70 (230)
+++.++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 988765
No 262
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=91.95 E-value=0.19 Score=32.01 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=27.9
Q ss_pred CCCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026957 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
.++..|.+.|+++.+..+|+.+|..+..+.
T Consensus 19 y~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 19 YKDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp BTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred ecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 368899999999999999999999999994
No 263
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=91.79 E-value=1.1 Score=27.63 Aligned_cols=58 Identities=14% Similarity=0.370 Sum_probs=40.6
Q ss_pred EEEeeccchHHHHHHhhccccCCCC--CceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 166 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tv~~lK~~i~~~~~~~~--~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
.+++ ...|+.+|.+.+....++.. ....+..||....+ .+.-+++||+|.+.--..||
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 3555 56799999999987644322 45667788876432 35568999999887766666
No 264
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=91.30 E-value=0.49 Score=28.42 Aligned_cols=60 Identities=13% Similarity=0.327 Sum_probs=42.7
Q ss_pred cCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+|+.+. + ...|+.+|.+.+ ++++....+..||..... ....+.-+++||.|.++--..||
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG-LEVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG-GGCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCc-cccCCcCCCCCCEEEEEeecccC
Confidence 455554 4 567999998877 355667777789987753 35566779999999888766665
No 265
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=91.05 E-value=0.32 Score=29.47 Aligned_cols=61 Identities=11% Similarity=0.218 Sum_probs=43.3
Q ss_pred cCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+|+.+ +++...|+.+|.+.+ ++++....+..||..... ....+.-+++||.|.+.--..||
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEEESCCCC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEEeecccC
Confidence 44543 456678999998877 456677777789987753 24455678999999887766555
No 266
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=90.90 E-value=1.1 Score=35.68 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=54.5
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCC-CceEEEE---cC--eecCCCCcccccCCCCCCEEEEEEEe
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF---AG--KQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~-~~~~l~~---~g--~~l~d~~~L~~~~i~~~~~i~~~~~~ 225 (230)
+.+.|...+| ++.+.+++.+|+.++-+.|+++.|+.. +.+-|.+ +| .-|+.++++.+.+++.+....+.+|.
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 4567778887 678999999999999999999999854 4456654 33 24687889988877766666666553
No 267
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=90.55 E-value=1.2 Score=28.80 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=33.5
Q ss_pred CCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEEecc
Q 026957 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG 47 (230)
Q Consensus 8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~~~g 47 (230)
.+|....+.++++.+..+|.+++.+..++++.+ -.+.|..
T Consensus 13 ~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 13 YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 368999999999999999999999999998655 4555643
No 268
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=90.09 E-value=0.45 Score=29.55 Aligned_cols=61 Identities=7% Similarity=0.152 Sum_probs=46.0
Q ss_pred cCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 161 ~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
+|+.+.+ +..|+.+|-+.+ ++++....+..||..+.. ....+.-+++||.|.++--..||.
T Consensus 6 NG~~~e~---~~~Tl~~LL~~l----~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 6 NGEQREV---QSASVAALMTEL----DCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp TTEEECC---CCSBHHHHHHHT----TCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCCC
T ss_pred CCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCCc
Confidence 4554444 567999987644 677888888899988764 367778899999999888777774
No 269
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=89.78 E-value=0.32 Score=30.72 Aligned_cols=62 Identities=15% Similarity=0.333 Sum_probs=46.9
Q ss_pred cCceeEEEee--ccchHHHHHHhhccccCCC-CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 161 TGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 161 ~~~~~~~~v~--~~~tv~~lK~~i~~~~~~~-~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
+|+.+ +++ ...|+.+|-+.+ +++ +....+..||..+.- ....+.-+++||.|.++.-..||+
T Consensus 6 NGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 6 NGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp TTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCCCCSC
T ss_pred CCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeeecCCC
Confidence 45544 444 568999987655 566 777777899988864 477788899999999888887775
No 270
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=89.63 E-value=1.5 Score=35.22 Aligned_cols=74 Identities=11% Similarity=0.105 Sum_probs=56.3
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCC-CceEEEE--cCe--ecCCCCcccccCCCCCCEEEEEEEe
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~-~~~~l~~--~g~--~l~d~~~L~~~~i~~~~~i~~~~~~ 225 (230)
..+.+.|...+| ++.+.+++.+|+.++-+.|+.+.|+.. +.+-|.+ +|. -|+.++++.+.+++.+....+.+|.
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 346677888888 788999999999999999999999854 4455554 443 3788889999887766666565553
No 271
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=89.63 E-value=1.5 Score=30.14 Aligned_cols=61 Identities=34% Similarity=0.541 Sum_probs=41.6
Q ss_pred ceeEEEeeccchHHHHHHhhccc----cCCC----CCceEEEE-cC---eecC----------CC----CcccccCCCCC
Q 026957 163 KTITLEVESSDTIDNVKAKIQDK----EGIP----PDQQRLIF-AG---KQLE----------DG----RTLADYNIQKE 216 (230)
Q Consensus 163 ~~~~~~v~~~~tv~~lK~~i~~~----~~~~----~~~~~l~~-~g---~~l~----------d~----~~L~~~~i~~~ 216 (230)
..+++.+-..+||.++|++|-.. .+.| ++.+.|.| .| ..|. +. .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 45778888899999999998542 3554 34556664 12 1221 11 47889999999
Q ss_pred CEEEEEE
Q 026957 217 STLHLVL 223 (230)
Q Consensus 217 ~~i~~~~ 223 (230)
+++.++-
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9997764
No 272
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=89.51 E-value=1.6 Score=28.20 Aligned_cols=48 Identities=10% Similarity=0.210 Sum_probs=38.5
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCC-cEEEEcCcc
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQ 125 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~~~g~~ 125 (230)
++|++. .+|..+.+.++++.+..+|.+++.+.++++... ..+.|....
T Consensus 7 vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe 55 (89)
T 1vd2_A 7 VRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred EEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence 555553 567788999999999999999999999987544 788887654
No 273
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=89.21 E-value=0.45 Score=33.22 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=29.7
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE
Q 026957 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~ 121 (230)
..+.|..+.|+.+|+..|++.+|+|++.++|..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 356888899999999999999999999999873
No 274
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=89.19 E-value=1.3 Score=28.38 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=43.1
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhC-C-----C-----CCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeecc
Q 026957 87 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~-i-----~-----~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 152 (230)
....++++...||++|.+.+..+.. + . .....+..||+.... +.-+++|+.|.+.....+|
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4567888888899999999987753 1 1 022567788877754 4568889999887555443
No 275
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=89.03 E-value=0.53 Score=28.45 Aligned_cols=60 Identities=10% Similarity=0.178 Sum_probs=41.4
Q ss_pred cCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeec
Q 026957 85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 85 ~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
+|+.+ +++...||.+|.+.+ ++++....+..||...... ...+.-+++|+.|.++....|
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~G 65 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAG 65 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCC
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeeccc
Confidence 45544 556778999999876 5667777777888776432 234566889999988754443
No 276
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=88.83 E-value=1.4 Score=28.12 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=43.9
Q ss_pred ceeEEEeeccchHHHHHHhhccccC-C-----C-----CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 163 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 163 ~~~~~~v~~~~tv~~lK~~i~~~~~-~-----~-----~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
....++++...||.+|.+.+...+. + . .....+..||+.... +.-+++||.|.+.--..||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4567777777899999999987652 1 0 123567788887764 4568999999887766665
No 277
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=88.54 E-value=1.8 Score=38.00 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=55.9
Q ss_pred ceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCC-CceEEEEc---C--eecCCCCcccccCCCCCCEEEEEEEe
Q 026957 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRL 225 (230)
Q Consensus 152 ~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~-~~~~l~~~---g--~~l~d~~~L~~~~i~~~~~i~~~~~~ 225 (230)
.+.+.|...+| ++.+.+++.+|+.+|-..|+...|+.. +.+-|.+. | .-|+.++++.+.+++.+....+.+|.
T Consensus 4 ~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FRv 82 (575)
T 2i1j_A 4 SMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRA 82 (575)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEEE
T ss_pred eEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEEE
Confidence 45677888887 678999999999999999999999854 45666542 2 35677888988877777766666664
No 278
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=88.30 E-value=1.9 Score=27.84 Aligned_cols=71 Identities=13% Similarity=0.122 Sum_probs=44.3
Q ss_pred CEEEEEcCC------CcEEEEEecCCCcHHHHHHHhhhhhCC-------------CCCceEEEeccccccCCCccccccc
Q 026957 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEGI-------------PPDQQRLIFAGKQLEDGRTLADYNI 61 (230)
Q Consensus 1 m~v~v~~~~------g~~~~~~v~~~~tv~~lK~~i~~~~gi-------------~~~~q~l~~~g~~l~d~~~l~~~~i 61 (230)
|.|+|+... |....++. +..||.+|.+.+.....- ....-.+..||+...+.. -.++.+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~-~~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSG-GLATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTT-GGGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcC-CCCcCC
Confidence 677887764 43335664 568999999999877520 001235567777665322 234568
Q ss_pred ccccceeeeeee
Q 026957 62 QKESTLHLVLRL 73 (230)
Q Consensus 62 ~~~~~i~l~~~~ 73 (230)
.+++.|.++...
T Consensus 79 ~~gDeV~i~Ppv 90 (93)
T 3dwg_C 79 ADGDSVTILPAV 90 (93)
T ss_dssp CTTCEEEEEECC
T ss_pred CCCCEEEEECCC
Confidence 889988877543
No 279
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=87.60 E-value=1.2 Score=27.92 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=40.8
Q ss_pred eeEEEeeccchHHHHHHhhccccC-----CCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 164 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tv~~lK~~i~~~~~-----~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
...++ ....||.+|.+.+..... ++.....+..||+.... +.-+++||.|.+.--..||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 34444 456799999999876642 22344567788887653 4568999999887666665
No 280
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=87.41 E-value=2.1 Score=35.34 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=36.3
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccc
Q 026957 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~ 48 (230)
.-....+.+++..|+.++++.++..++++++.|.+++.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~ 359 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 359 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSS
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCC
Confidence 4567788999999999999999999999999999999873
No 281
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=86.60 E-value=0.74 Score=41.35 Aligned_cols=51 Identities=31% Similarity=0.602 Sum_probs=42.5
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec-cccccCCCccccc
Q 026957 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY 59 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~-g~~l~d~~~l~~~ 59 (230)
.+..+++.+.++.|+.+++..|++.+|||++.|.+++. |..+++......|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 45667889999999999999999999999999999985 4556666565554
No 282
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=86.51 E-value=1.1 Score=28.08 Aligned_cols=58 Identities=5% Similarity=0.118 Sum_probs=39.5
Q ss_pred eEeeecCCCChHHHHHHHHHhHhC-----CCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeec
Q 026957 88 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~-----i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
...++ ....||++|.+.+..... ++.....+..||+.... +..+++|+.|.+.....|
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~G 80 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTG 80 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCC
Confidence 45555 567799999999876532 23344567788887643 556889999988654443
No 283
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=86.03 E-value=1.2 Score=27.58 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=40.2
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCCCCCc--EEEEcCcccCCCcchhhhccccCCceEEEEEeec
Q 026957 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q--~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
...++++...||.+|.+.+..... ..... .+..||+....+ ..+++|+.|.+.....|
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~G 76 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSG 76 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCC
Confidence 456777778899999999877642 11233 677888877543 56889999887654433
No 284
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=85.45 E-value=3.9 Score=32.31 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=48.7
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEEec---cc--cccCCCcccccccccccceee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~~~---g~--~l~d~~~l~~~~i~~~~~i~l 69 (230)
|.+.|..++| +..+.+++.+|+.|+-+.|.+..|+.... --|.+. |. -|+.++.+.+.++..+....+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l 75 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLF 75 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEE
Confidence 4678888888 78899999999999999999999998643 234442 32 266677777765544444333
No 285
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=85.34 E-value=1 Score=27.92 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=40.7
Q ss_pred eeEEEeeccchHHHHHHhhccccCCCCCce--EEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 164 ~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~--~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
...++++...|+.+|.+.+...+. ..... .+..||+....+ .-+++||.|.+.--..||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 455666677899999998876641 01223 677899877643 568999999876655555
No 286
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=84.93 E-value=4.8 Score=32.17 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=48.1
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEEe--cc--ccccCCCcccccccccccce
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--AG--KQLEDGRTLADYNIQKESTL 67 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~~--~g--~~l~d~~~l~~~~i~~~~~i 67 (230)
.+.|..++| ++.+.+++.+|+.+|-+.|.+..|+.... --|.+ .| .-|+.++.+.+.+...+...
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~ 93 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPV 93 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCE
Confidence 567888898 88899999999999999999999998532 24444 23 22677777877765544443
No 287
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=84.68 E-value=5.5 Score=25.28 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=35.4
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcC
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 123 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g 123 (230)
..|.|++. .++..+.+.++.+.+..+|+.+|..+..+ +...++ +++
T Consensus 11 ~~~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~ykd 57 (85)
T 1ip9_A 11 KTTKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLF 57 (85)
T ss_dssp CCEEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCS
T ss_pred CceEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEecC
Confidence 44677774 45678999999999999999999999988 344444 444
No 288
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=84.21 E-value=6.2 Score=25.24 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=41.2
Q ss_pred EEEeeccchHHHHHHhhccccCC------C-------CCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 166 TLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tv~~lK~~i~~~~~~------~-------~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
.++. +..||.+|.+.+..++.- . .....+..||.......- .+.-+++||+|.+.--..||
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCCC
Confidence 4553 457999999999877520 1 113566788876653222 34568999999888777776
No 289
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=84.11 E-value=4.5 Score=26.84 Aligned_cols=73 Identities=10% Similarity=0.206 Sum_probs=50.5
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE---EcCc--ccCCCcchhhhccccCCceEEEEE
Q 026957 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLR 148 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~--~L~d~~~L~~~~i~~~~~i~l~~~ 148 (230)
.+...|...+.....+.++.+.|+.+++..++++.+...+.+.|. ++|. .++++..--.-.+.-++.+++..+
T Consensus 9 ~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 9 EIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp CCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred ceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 344455566777888999999999999999999999876677776 5664 345544433334555666665543
No 290
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=83.53 E-value=0.51 Score=29.55 Aligned_cols=52 Identities=8% Similarity=0.186 Sum_probs=37.7
Q ss_pred eeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEee
Q 026957 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 90 ~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (230)
.++++...||.+|.+.+ ++++....+..||+....+ .-+++|+.|.+.....
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~ 75 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVS 75 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccc
Confidence 45667778999998765 4677777777899877654 5688899887764433
No 291
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=83.40 E-value=5.3 Score=35.13 Aligned_cols=65 Identities=31% Similarity=0.510 Sum_probs=45.3
Q ss_pred CceeEEEeeccchHHHHHHhhcccc--CCC------CCceEEEEc----Ce-ecCCC-------------CcccccCCCC
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~--~~~------~~~~~l~~~----g~-~l~d~-------------~~L~~~~i~~ 215 (230)
...+++.|-..+||.++|++|-... |.| ++.+.|.|. |+ .|.|. .||++|+|++
T Consensus 273 ~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 352 (644)
T 3hm6_X 273 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 352 (644)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCC
Confidence 3568888889999999999997532 433 345666652 22 34331 4899999999
Q ss_pred CCEEEEEEEec
Q 026957 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 ~~~i~~~~~~~ 226 (230)
|+++.++-+..
T Consensus 353 ga~v~L~p~~~ 363 (644)
T 3hm6_X 353 GATVALVPCLT 363 (644)
T ss_dssp TCEEEEEEC--
T ss_pred CcEEEEEeccc
Confidence 99999887653
No 292
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=83.26 E-value=4.8 Score=35.30 Aligned_cols=63 Identities=30% Similarity=0.492 Sum_probs=45.2
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhh--CCCC------CceEEEec-c---c-cccC-------------CCcccccccccc
Q 026957 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIFA-G---K-QLED-------------GRTLADYNIQKE 64 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~--gi~~------~~q~l~~~-g---~-~l~d-------------~~~l~~~~i~~~ 64 (230)
...++.|-..|||.++|+||-+.. |.|- +...|-|. | + .|.| =.||++|++.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 568899999999999999998763 4543 44455552 2 2 2332 258999999999
Q ss_pred cceeeeeee
Q 026957 65 STLHLVLRL 73 (230)
Q Consensus 65 ~~i~l~~~~ 73 (230)
+++.++.+.
T Consensus 327 a~v~L~p~~ 335 (627)
T 3ig3_A 327 SLVALVPKQ 335 (627)
T ss_dssp CEEEEEEC-
T ss_pred ceEEEEecc
Confidence 999987654
No 293
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=83.08 E-value=1.5 Score=26.23 Aligned_cols=60 Identities=13% Similarity=0.300 Sum_probs=40.5
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEeec
Q 026957 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
.+|+.+. + ...||.+|.+.+ ++++....+..||.....+ ...+.-+++|+.|.++....+
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~G 63 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQG 63 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeeccc
Confidence 4566554 4 568999998876 4566666777888766432 234456889999988755443
No 294
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=83.06 E-value=0.38 Score=30.16 Aligned_cols=54 Identities=9% Similarity=0.214 Sum_probs=38.9
Q ss_pred EEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 166 ~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
.+++++..||.+|.+.+. +++....+..||+....+ .-+++||.|.+.--..||
T Consensus 24 ~~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 345566789999988764 556667777899887654 568899998776555554
No 295
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=82.66 E-value=5.7 Score=34.88 Aligned_cols=65 Identities=28% Similarity=0.467 Sum_probs=45.4
Q ss_pred CceeEEEeeccchHHHHHHhhcccc--CCC------CCceEEEE----cCe-ecCCC-------------CcccccCCCC
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK 215 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~--~~~------~~~~~l~~----~g~-~l~d~-------------~~L~~~~i~~ 215 (230)
...+++.|-..+||.++|++|-... |.| ++.+.|.| .|+ .|.|. .||++|+|++
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 4568888889999999999996643 333 45566765 222 23331 4899999999
Q ss_pred CCEEEEEEEec
Q 026957 216 ESTLHLVLRLR 226 (230)
Q Consensus 216 ~~~i~~~~~~~ 226 (230)
|+++.++-|..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99999988764
No 296
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=82.00 E-value=3.2 Score=26.34 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=40.5
Q ss_pred EEeeccchHHHHHHhhccccC------C-----CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 167 LEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tv~~lK~~i~~~~~------~-----~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
++++...|+.+|.+.+..+.. + ......+..||+..... .-.+.-+++||.|.+.--..||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCCCC
Confidence 455556799999999877641 1 11445667888766422 2345568999999887666665
No 297
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=81.98 E-value=4.4 Score=24.47 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=39.0
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
|.++|...+|+. .++..+.|+.++-..+....+ ...--...+|+..+-+ +.+.+++.+.++
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 788998878886 567788999999887754332 1122234677655443 445556665554
No 298
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=81.06 E-value=3.8 Score=32.63 Aligned_cols=74 Identities=9% Similarity=0.009 Sum_probs=52.8
Q ss_pred cceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCC-CceEEEEc---C--eecCCCCcccccCCCCCCEEEEEEE
Q 026957 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 151 ~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~-~~~~l~~~---g--~~l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
..+.+.|...+|....+.+++.+|+.++-..|+++.|+.. +.+-|.+. | .-|+..+++.+........+++..+
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvk 95 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVK 95 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEES
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEE
Confidence 3467888899999999999999999999999999999854 44556532 2 3467778887765444445555443
No 299
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=80.49 E-value=7.3 Score=26.27 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=44.3
Q ss_pred ceeeEEEecc------C--eeEeeecCC---CChHHHHHHHHHhHhC-CC---------CC-CcEEEEcCcccCCCcch-
Q 026957 76 GMQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEG-IP---------PD-QQRLIFAGKQLEDGRTL- 132 (230)
Q Consensus 76 ~~~v~v~~~~------g--~~~~i~v~~---~~tV~~lK~~i~~~~~-i~---------~~-~q~L~~~g~~L~d~~~L- 132 (230)
.|.|+|+... | +.+.++++. ..||.+|.+.+.+++. .. .. ...++.|+... ..+
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di---~~l~ 87 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADW---ELLG 87 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBH---HHHC
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeee---eccC
Confidence 3666666542 2 356677773 3699999999988761 10 11 12233444311 111
Q ss_pred -hhhccccCCceEEEEEeecc
Q 026957 133 -ADYNIQKESTLHLVLRLRGG 152 (230)
Q Consensus 133 -~~~~i~~~~~i~l~~~~~~~ 152 (230)
.++.+++|+.|.+.....+|
T Consensus 88 gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCC
Confidence 35778999999887776666
No 300
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=80.49 E-value=1.9 Score=28.31 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=26.1
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
+..+.+-|+++.+..+|..+|..+.+++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 6789999999999999999999999876
No 301
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=79.87 E-value=8 Score=33.97 Aligned_cols=68 Identities=15% Similarity=0.273 Sum_probs=48.9
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-ceEEEec---c--ccccCCCcccccccccccceee
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHL 69 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~l~~~---g--~~l~d~~~l~~~~i~~~~~i~l 69 (230)
|.+.|..++| ++.+.+++..|+.+|-..|....|++.. .--|++. | .-|+.+..+.+.++..+..+.+
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L 78 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQF 78 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEE
Confidence 3577888888 7889999999999999999999999753 3355542 2 2366667777766554444333
No 302
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=79.60 E-value=4.1 Score=26.89 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=44.7
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCC-cEEE-Ec-----CcccCCCcchhhh
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI-FA-----GKQLEDGRTLADY 135 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~-~~-----g~~L~d~~~L~~~ 135 (230)
...-|.|...+|....+.|++++|++++-+.+..+.+...+. -.|+ .. -+.++|...+-+.
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 345677888999999999999999999999999999865433 2333 21 2456776665544
No 303
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=79.41 E-value=5.6 Score=34.98 Aligned_cols=63 Identities=30% Similarity=0.474 Sum_probs=44.7
Q ss_pred cEEEEEecCCCcHHHHHHHhhhh--hCCCC------CceEEEec----cc-cccC-------------CCcccccccccc
Q 026957 11 KTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIFA----GK-QLED-------------GRTLADYNIQKE 64 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~--~gi~~------~~q~l~~~----g~-~l~d-------------~~~l~~~~i~~~ 64 (230)
...++.|-..|||.++|+||-+. -|.|. +...|-|. |+ .|.| =.||++|++++|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 35788999999999999999865 35554 33445552 22 2333 268999999999
Q ss_pred cceeeeeee
Q 026957 65 STLHLVLRL 73 (230)
Q Consensus 65 ~~i~l~~~~ 73 (230)
+++.++.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887654
No 304
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=79.25 E-value=3.1 Score=33.13 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=45.6
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eEEEec---c--ccccCCCccccc
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADY 59 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~-q~l~~~---g--~~l~d~~~l~~~ 59 (230)
|.+.|..++|....+.+++..|+.||-+.|.+..|+.... --|.+. | .-|+.++.+.+.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q 82 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ 82 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHH
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHh
Confidence 4688999999999999999999999999999999998533 345543 2 225566666554
No 305
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=76.72 E-value=9.6 Score=24.30 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=42.9
Q ss_pred EEEEeccCc-eeEEEeec-cchHHHHHHhhccccCCCCCceEEE-Ec---CeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 155 IFVKTLTGK-TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FA---GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 155 i~v~~~~~~-~~~~~v~~-~~tv~~lK~~i~~~~~~~~~~~~l~-~~---g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
++.+....+ .-.+.++. ..+|.+||+.|..+.++-...+-|. ++ +.+..|+. .-|..++.|.+-....+|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~----~lIprnssViVrRvP~~~ 84 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDN----ALIPKNSSVIVRRIPIGG 84 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTT----CEEETTCCEEEEEEECSS
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCc----eEEecCCEEEEEeccCcc
Confidence 444555544 35577774 4699999999999887755556554 43 34444432 236677777555545444
No 306
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=76.27 E-value=11 Score=24.38 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=36.8
Q ss_pred eeEeeecC--CCChHHHHHHHHHhHhCCCCC-------------CcEEEEcCcccCCCcchhhhccccCCceEEEEEeec
Q 026957 87 KTITLEVE--SSDTIDNVKAKIQDKEGIPPD-------------QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 87 ~~~~i~v~--~~~tV~~lK~~i~~~~~i~~~-------------~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
+...++++ ...||++|.+.+.++..-... ...+..|+...+-. .=.++-+++|++|.+.....|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~-~~~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELE-GEKDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGG-TGGGCBCCTTCEEEEEECTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcccc-CCCCcCcCCCCEEEEECCCCC
Confidence 44566666 678999999999887631111 11233444321100 013567889999877655444
No 307
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=75.13 E-value=13 Score=24.70 Aligned_cols=65 Identities=9% Similarity=0.224 Sum_probs=46.7
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE---eccc--cccCCCcccccccccccceeeeeee
Q 026957 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~---~~g~--~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
+..-+++.+..+.|+.+|+..+.++.+...+.+.|. ++|. .++++..--.-.+.-+.++++..+.
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 18 EHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp SSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred cCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 456778999999999999999999999887777776 4563 3555444334445566677776543
No 308
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=73.96 E-value=15 Score=23.74 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=25.6
Q ss_pred CEEEEEcCC-------C-cEEEEEec--CCCcHHHHHHHhhhhhC
Q 026957 1 MQIFVKTLT-------G-KTITLEVE--SSDTIDNVKAKIQDKEG 35 (230)
Q Consensus 1 m~v~v~~~~-------g-~~~~~~v~--~~~tv~~lK~~i~~~~g 35 (230)
|.|.|+... | +...+++. +..||++|.+.+.+...
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 466666553 2 45677777 78999999999988763
No 309
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=73.65 E-value=6.9 Score=25.76 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=31.3
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (230)
|.|=..+|...+|.|++++|+.++-+.+..+.+....
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~ 48 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSD 48 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCC
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCC
Confidence 4444568999999999999999999999999887643
No 310
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=73.62 E-value=11 Score=23.50 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=51.3
Q ss_pred EEEeeccchHHHHHHhhccccCCCCCceEEE-EcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 166 ~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
.+.|++....-.+-+..+++..+|+....++ -+|.=....++-...-++.|+.+.++-|-+=|+
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG~ 91 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSCC
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccccC
Confidence 3667777777777778888889999888777 456667888888888899999999999966554
No 311
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=73.44 E-value=5.1 Score=26.01 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=33.1
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCce-EEEecccc
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQ 49 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~l~~~g~~ 49 (230)
.+.+.+.|++++|=.++|+.|+..+++.+..- .+...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 46899999999999999999999999998665 34455553
No 312
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=73.40 E-value=18 Score=24.29 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=39.8
Q ss_pred eeEEEeec---cchHHHHHHhhcccc-CCC---------C-CceEEEEcCeecCCCCcc--cccCCCCCCEEEEEEEecC
Q 026957 164 TITLEVES---SDTIDNVKAKIQDKE-GIP---------P-DQQRLIFAGKQLEDGRTL--ADYNIQKESTLHLVLRLRG 227 (230)
Q Consensus 164 ~~~~~v~~---~~tv~~lK~~i~~~~-~~~---------~-~~~~l~~~g~~l~d~~~L--~~~~i~~~~~i~~~~~~~~ 227 (230)
...++++. ..||.+|-..+++++ +.. . ....++.|+... .-+ .++-+++||.|.++--..|
T Consensus 31 ~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di---~~l~gldt~L~dGDeV~iip~vaG 107 (114)
T 1wgk_A 31 KHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADW---ELLGELDYQLQDQDSILFISTLHG 107 (114)
T ss_dssp EEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBH---HHHCTTTCBCCSSEEEEEEECSCC
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeee---eccCCcCcCCCCCCEEEEeCCCCC
Confidence 55677773 369999999999886 110 1 112333444311 111 3577899999999888888
Q ss_pred CC
Q 026957 228 GD 229 (230)
Q Consensus 228 g~ 229 (230)
|+
T Consensus 108 G~ 109 (114)
T 1wgk_A 108 GS 109 (114)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 313
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=72.70 E-value=9.4 Score=22.92 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=39.7
Q ss_pred eeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEE
Q 026957 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 153 ~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
|.+.+...+|+. .+++...|+.++-+.+....+ ........+|+..+-+ +-+++|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 345666666665 566678899999877755432 2223334688766554 45567888877653
No 314
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=72.63 E-value=5.9 Score=25.04 Aligned_cols=59 Identities=10% Similarity=0.179 Sum_probs=37.5
Q ss_pred eecCCCChHHHHHHHHHhHhC------C-----CCCCcEEEEcCcccCCCcchhhhccccCCceEEEEEee
Q 026957 91 LEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (230)
Q Consensus 91 i~v~~~~tV~~lK~~i~~~~~------i-----~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (230)
++++...||++|.+.+..... + ......+..||...... .-.+..+++|+.|.+.....
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~ 88 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVA 88 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTT
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCC
Confidence 345556899999999987742 1 01345677888766421 12345688999988764433
No 315
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=71.91 E-value=2.4 Score=28.49 Aligned_cols=75 Identities=16% Similarity=0.290 Sum_probs=41.8
Q ss_pred eeeEEEecc------CeeEeeecCC----CChHHHHHHHHHhHhCCCCCCcEEE-EcC--c------ccCCCcch-----
Q 026957 77 MQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRTL----- 132 (230)
Q Consensus 77 ~~v~v~~~~------g~~~~i~v~~----~~tV~~lK~~i~~~~~i~~~~q~L~-~~g--~------~L~d~~~L----- 132 (230)
|+|.|+... |+...++++. ..||.+|-+.+.+.+. ..+-.|+ -+| . .|-++...
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 455555433 3455677773 3599999998888752 1122222 111 0 12122222
Q ss_pred hhhccccCCceEEEEEeecce
Q 026957 133 ADYNIQKESTLHLVLRLRGGM 153 (230)
Q Consensus 133 ~~~~i~~~~~i~l~~~~~~~~ 153 (230)
.+|-+++|++|.+.....+|.
T Consensus 83 ldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SCCCCCSSCEEEEEECCCCC-
T ss_pred cccCCCCcCEEEEeCCCcccc
Confidence 246789999998877776665
No 316
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=71.23 E-value=13 Score=25.37 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=47.3
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCC------CcEEE---EcCc--ccCCCcchhhhccccCCce
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDGRTLADYNIQKESTL 143 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~------~q~L~---~~g~--~L~d~~~L~~~~i~~~~~i 143 (230)
+.+...|...+.....+.++.+.|+.+++..++++.+...+ .+.|. ++|. .|+++..--.-.+.-++.+
T Consensus 8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRL 87 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHL 87 (120)
T ss_dssp CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEE
T ss_pred CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceE
Confidence 34455555667777888999999999999999999986543 66665 5664 3454433333334455555
Q ss_pred EEE
Q 026957 144 HLV 146 (230)
Q Consensus 144 ~l~ 146 (230)
++.
T Consensus 88 fvc 90 (120)
T 2dhz_A 88 FAC 90 (120)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 317
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=70.95 E-value=5.5 Score=25.41 Aligned_cols=33 Identities=9% Similarity=0.259 Sum_probs=29.2
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceE
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.+.+.|++.+|=.++|+.|+..+|+.+..-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VN 54 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVN 54 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEE
Confidence 468999999999999999999999999975443
No 318
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=70.53 E-value=19 Score=23.47 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=56.0
Q ss_pred EEEEEcCCC---cEEEEEecCCCcHHHHHHHhhhhhCCCC--CceEEEecc---ccccCCCcccccccccccceeeeee
Q 026957 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 2 ~v~v~~~~g---~~~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~l~~~g---~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+|+|...+. ...++.|.-+.-|+-+-.++.+...++. ++--|.+.. ..+....||..||+..++.++....
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 688888664 5689999999999999999998888775 334555533 4478889999999999998877543
No 319
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=69.86 E-value=4.2 Score=26.71 Aligned_cols=60 Identities=12% Similarity=0.271 Sum_probs=41.9
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCC-----------ceEEEecc-ccccC------CCcccccccccccceeee
Q 026957 11 KTITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLV 70 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-----------~q~l~~~g-~~l~d------~~~l~~~~i~~~~~i~l~ 70 (230)
....+++++++|..++-+.+.+.-...-. ...|+..+ ..|+. +++|.+.|+.+|..|++.
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 35578999999999999999885332221 44555554 22322 577999999999888774
No 320
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=69.84 E-value=15 Score=25.35 Aligned_cols=75 Identities=9% Similarity=0.215 Sum_probs=48.5
Q ss_pred cCceeeEEEeccCee-------EeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCccc-CCCcchhhhcc---ccCC
Q 026957 74 RGGMQIFVKTLTGKT-------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADYNI---QKES 141 (230)
Q Consensus 74 ~~~~~v~v~~~~g~~-------~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L-~d~~~L~~~~i---~~~~ 141 (230)
++.+.|.|+-..+.. -.+-|+.+.||+++..-|.++..++++.--.+ |.+..+ ..+.++++.-- .+++
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDG 112 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDG 112 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTS
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCC
Confidence 355666665443322 34568889999999999999999999876655 655544 44566665431 2345
Q ss_pred ceEEEEE
Q 026957 142 TLHLVLR 148 (230)
Q Consensus 142 ~i~l~~~ 148 (230)
.+++...
T Consensus 113 fLyv~Ys 119 (130)
T 2zjd_A 113 FLYMVYA 119 (130)
T ss_dssp CEEEEEE
T ss_pred EEEEEEe
Confidence 5655543
No 321
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=69.82 E-value=16 Score=29.83 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=41.9
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCc--ccCCCcchhhhc
Q 026957 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK--QLEDGRTLADYN 136 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~--~L~d~~~L~~~~ 136 (230)
.......+.+.+..|+.++++++++.++++++.|.+.+.+. .++...+...|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 319 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred ccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 34556778889999999999999999999999999998873 334455555554
No 322
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=69.80 E-value=5.8 Score=26.03 Aligned_cols=60 Identities=12% Similarity=0.273 Sum_probs=42.0
Q ss_pred ceeEEEeeccchHHHHHHhhccccCC---CCC--------ceEEEEcC-eec------CCCCcccccCCCCCCEEEEE
Q 026957 163 KTITLEVESSDTIDNVKAKIQDKEGI---PPD--------QQRLIFAG-KQL------EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 163 ~~~~~~v~~~~tv~~lK~~i~~~~~~---~~~--------~~~l~~~g-~~l------~d~~~L~~~~i~~~~~i~~~ 222 (230)
....++++++.|..+|-+.+++.-.. .|+ .-.|+..+ ..| +-+++|.+.|+.+|+.|++.
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 35678999999999999999884322 122 34555444 122 23478999999999998875
No 323
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=69.60 E-value=20 Score=23.21 Aligned_cols=68 Identities=10% Similarity=0.200 Sum_probs=41.3
Q ss_pred CEEEEEcCC------C-cEEEEEecCCCcHHHHHHHhhhhhC-CCCC---------ce-------EEEeccccccCCCcc
Q 026957 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPPD---------QQ-------RLIFAGKQLEDGRTL 56 (230)
Q Consensus 1 m~v~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~g-i~~~---------~q-------~l~~~g~~l~d~~~l 56 (230)
|.|.|+... | +.+ +++ ..||.+|.+.+..... +... .- .+..||+..... .-
T Consensus 4 m~v~V~~fa~lr~~~g~~~~--~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPEL--PLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-EG 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEE--EEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-TS
T ss_pred eEEEEEEeHHHHHHhCCCeE--EEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-CC
Confidence 677887775 3 244 444 6899999999887742 1110 12 466777665322 22
Q ss_pred cccccccccceeeeee
Q 026957 57 ADYNIQKESTLHLVLR 72 (230)
Q Consensus 57 ~~~~i~~~~~i~l~~~ 72 (230)
.++.+.++++|.++..
T Consensus 80 ~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 80 LETLLKDSDEIGILPP 95 (99)
T ss_dssp TTSCCCTTEEEEEECC
T ss_pred CCCCCCCCCEEEEECC
Confidence 3446788888777643
No 324
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=69.37 E-value=7.8 Score=25.38 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=34.8
Q ss_pred eeeEEEecc-------CeeEeeecCCCChHHHHHHHHHhHhCCCC-----CCcEEEEcCc
Q 026957 77 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGK 124 (230)
Q Consensus 77 ~~v~v~~~~-------g~~~~i~v~~~~tV~~lK~~i~~~~~i~~-----~~q~L~~~g~ 124 (230)
+.|++...+ +..+.+-|+++.+..+|..+|.++.+++. ...++.|...
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDE 65 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDE 65 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECS
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcC
Confidence 556665432 45688999999999999999999998652 2246666653
No 325
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=69.14 E-value=15 Score=24.53 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=44.5
Q ss_pred CceeeEEEeccCee------EeeecCCCChHHHHHHHHHhHhCCCCCCc-EEEEcCcccCCCcchhhhcc---ccCCceE
Q 026957 75 GGMQIFVKTLTGKT------ITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADYNI---QKESTLH 144 (230)
Q Consensus 75 ~~~~v~v~~~~g~~------~~i~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~~~g~~L~d~~~L~~~~i---~~~~~i~ 144 (230)
+.+.|.|+...+.. -.+-|+.+.||+++..-|..+..++++.- -|+.++.....+.++++.-- ..++.++
T Consensus 26 ~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLy 105 (110)
T 2r2q_A 26 DRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLY 105 (110)
T ss_dssp TEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEE
T ss_pred CceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEE
Confidence 44555555443221 23467778899999999999999988764 44445554455666766531 2344555
Q ss_pred EE
Q 026957 145 LV 146 (230)
Q Consensus 145 l~ 146 (230)
+.
T Consensus 106 i~ 107 (110)
T 2r2q_A 106 VA 107 (110)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 326
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=68.59 E-value=5.3 Score=35.85 Aligned_cols=52 Identities=31% Similarity=0.602 Sum_probs=42.5
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEc-CcccCCCcchhhh
Q 026957 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY 135 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~-g~~L~d~~~L~~~ 135 (230)
...+.+.+.+.++.|+.+++..|++.+|++++.|.+++. |..+++......|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 345667788999999999999999999999999999864 4566666666665
No 327
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=67.90 E-value=21 Score=22.74 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=33.3
Q ss_pred EeeecCC-CChHHHHHHHHHhHhCCCCCCcEEE-EcCc---ccCCCcchhhhccccCCceEEE
Q 026957 89 ITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAGK---QLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 89 ~~i~v~~-~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~---~L~d~~~L~~~~i~~~~~i~l~ 146 (230)
-.+.++. ..+|.+||+.|..+.+....+.-|. ++.+ +-.|+. .-|..++.|.+.
T Consensus 20 ~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~----~lIprnssViVr 78 (86)
T 2c7h_A 20 DTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDN----ALIPKNSSVIVR 78 (86)
T ss_dssp EEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTT----CEEETTCCEEEE
T ss_pred ceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCc----eEEecCCEEEEE
Confidence 4566665 4499999999999888766666655 4432 223332 235556666443
No 328
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=65.89 E-value=5.1 Score=26.87 Aligned_cols=65 Identities=15% Similarity=0.307 Sum_probs=37.6
Q ss_pred CceeEEEeec----cchHHHHHHhhccccCCCCCceEEE-EcC--e------ecCCCCcc-----cccCCCCCCEEEEEE
Q 026957 162 GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRTL-----ADYNIQKESTLHLVL 223 (230)
Q Consensus 162 ~~~~~~~v~~----~~tv~~lK~~i~~~~~~~~~~~~l~-~~g--~------~l~d~~~L-----~~~~i~~~~~i~~~~ 223 (230)
|+...++++. ..||.+|-..+.+++.- .+-.+. -+| . +|-+++.. .+|-+++||.|.+.-
T Consensus 20 g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~--~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 20 AKQTSLQLDGVVPTGTNLNGLVQLLKTNYVK--ERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp TSCSEECCCCSCGGGCCHHHHHHHHTTTTCC--SCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred CCeEEEEeCCcCCCCccHHHHHHHHHHHccc--cchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 3455677763 35999998888887521 111111 111 0 12122222 357789999998887
Q ss_pred EecCC
Q 026957 224 RLRGG 228 (230)
Q Consensus 224 ~~~~g 228 (230)
-+-||
T Consensus 98 tlhg~ 102 (110)
T 2k9x_A 98 TLHGG 102 (110)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 77776
No 329
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=65.69 E-value=7 Score=25.48 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=30.4
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEE-eccc
Q 026957 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 48 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~ 48 (230)
.+.+.|++++|=.|+|+.|+..+|+.+..-.-. ..|+
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 389999999999999999999999998655433 4443
No 330
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.68 E-value=8.6 Score=24.53 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=29.3
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceE
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.+.+.|++.+|=.++|+.|+..+++.+..-.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VN 55 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVN 55 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEE
Confidence 478999999999999999999999999975443
No 331
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=65.26 E-value=7.7 Score=25.11 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=32.3
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceE-EEeccc
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 48 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~-l~~~g~ 48 (230)
.+.+.+.|++.+|=.++|+.|+..+++.+..-. +...|+
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 378999999999999999999999999986543 335554
No 332
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=62.87 E-value=26 Score=22.08 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=46.2
Q ss_pred EeeecCCCChHHHHHHHHHhHh-C--CC--CCCcEEEEcCcc--cCCCcchhhhccccCCceEEE
Q 026957 89 ITLEVESSDTIDNVKAKIQDKE-G--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~-~--i~--~~~q~L~~~g~~--L~d~~~L~~~~i~~~~~i~l~ 146 (230)
.-+.++..+|+.++=++++... | ++ +...+..++|.. +.++.++++.|+.+-+.|.+.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~ 81 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVV 81 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEE
Confidence 4567889999999999988754 3 22 235677789987 999999999999999888765
No 333
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=61.78 E-value=28 Score=23.53 Aligned_cols=74 Identities=11% Similarity=0.157 Sum_probs=45.9
Q ss_pred cCceeeEEEeccCe------eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCcccCCCcchhhhcc---ccCCce
Q 026957 74 RGGMQIFVKTLTGK------TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNI---QKESTL 143 (230)
Q Consensus 74 ~~~~~v~v~~~~g~------~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~~L~~~~i---~~~~~i 143 (230)
++.+.|.|.-..+. .-.+-|+.+.||+++...|.++..++++.--.+ .++.....+.++++.-- .+++.+
T Consensus 28 P~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfL 107 (118)
T 3rui_B 28 KNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFL 107 (118)
T ss_dssp SSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred CCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeE
Confidence 34455555543321 224568889999999999999999988765444 45544455666655432 234455
Q ss_pred EEEE
Q 026957 144 HLVL 147 (230)
Q Consensus 144 ~l~~ 147 (230)
++..
T Consensus 108 yv~Y 111 (118)
T 3rui_B 108 YVTY 111 (118)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 334
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=60.41 E-value=18 Score=31.43 Aligned_cols=44 Identities=16% Similarity=0.106 Sum_probs=37.4
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCC--CceEEEe
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 45 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~l~~ 45 (230)
.+.|..++|....+.+++..|+.+|-+.|..+.|+.. +.--|++
T Consensus 218 ~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 218 TSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred ceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 5778889999999999999999999999999999985 2334544
No 335
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=60.18 E-value=35 Score=23.33 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=46.1
Q ss_pred cCceeeEEEeccCe------eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCcccCCCcchhhhcc---ccCCce
Q 026957 74 RGGMQIFVKTLTGK------TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNI---QKESTL 143 (230)
Q Consensus 74 ~~~~~v~v~~~~g~------~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~~L~~~~i---~~~~~i 143 (230)
++.+.|.|.-..+. .-.+-|+.+.||+++...|.++..++++.--.+ .++.....+.++++.-- .+++.+
T Consensus 34 P~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfL 113 (125)
T 3m95_A 34 PDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFL 113 (125)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCE
T ss_pred CCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeE
Confidence 34455555543321 224568889999999999999999988875444 45544455667765432 134455
Q ss_pred EEEE
Q 026957 144 HLVL 147 (230)
Q Consensus 144 ~l~~ 147 (230)
++..
T Consensus 114 Y~~Y 117 (125)
T 3m95_A 114 YIAF 117 (125)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5543
No 336
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=59.94 E-value=19 Score=23.95 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=26.7
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhh
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 34 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~ 34 (230)
|.+=..+|-...++++.++|+.++|+.+.+..
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA 53 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEA 53 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHH
Confidence 34445689999999999999999999887763
No 337
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=59.67 E-value=34 Score=22.35 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=52.8
Q ss_pred eeeEEEecc---CeeEeeecCCCChHHHHHHHHHhHhCCCC--CCcEEEEcC---cccCCCcchhhhccccCCceEEEE
Q 026957 77 MQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 77 ~~v~v~~~~---g~~~~i~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g---~~L~d~~~L~~~~i~~~~~i~l~~ 147 (230)
+.|+|...+ ....++.|..+.-|+.+..++-++..++. ++--|-+.. ..+.-..+|..||++.++.+++..
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 455665544 35578888888999999999998887654 345565544 357888999999999999887653
No 338
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=59.67 E-value=23 Score=24.31 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=33.6
Q ss_pred cchHHHHHHhhccccCCCCCceEEEE--cCeec-----C--CCCcccccCCCCCCEEEEE
Q 026957 172 SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL-----E--DGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 172 ~~tv~~lK~~i~~~~~~~~~~~~l~~--~g~~l-----~--d~~~L~~~~i~~~~~i~~~ 222 (230)
..|..+|-+.+..++|... .+.+.- +.+.| + -.++|.+.|+++|+.|.+.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 4588888777877787653 333331 12222 2 3489999999999998765
No 339
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=59.63 E-value=29 Score=21.64 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=51.5
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE-cCcccCCCcchhhhccccCCceEEEEEeec
Q 026957 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 151 (230)
..+.|++.+....+-+-.++++.+|+...-++. .|.-++..++-...-++.|+.+.+..|.+-
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRV 89 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRV 89 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSS
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccc
Confidence 356788888888888889999999998877775 556678889999999999999988876553
No 340
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=59.59 E-value=36 Score=23.07 Aligned_cols=74 Identities=11% Similarity=0.142 Sum_probs=47.0
Q ss_pred cCceeeEEEeccCe------eEeeecCCCChHHHHHHHHHhHhCCCCCCc-EEEEcCcccCCCcchhhhcc---ccCCce
Q 026957 74 RGGMQIFVKTLTGK------TITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADYNI---QKESTL 143 (230)
Q Consensus 74 ~~~~~v~v~~~~g~------~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~~~g~~L~d~~~L~~~~i---~~~~~i 143 (230)
++.+.|.|.-..+. .-.+-|+.+.||+++...|.++..++++.- -|+.++.....+.++++.-- .+++.+
T Consensus 29 P~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfL 108 (119)
T 3h9d_A 29 PDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFL 108 (119)
T ss_dssp TTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCE
T ss_pred CCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeE
Confidence 34455665544332 224568889999999999999999988764 44457665555666665432 234455
Q ss_pred EEEE
Q 026957 144 HLVL 147 (230)
Q Consensus 144 ~l~~ 147 (230)
++..
T Consensus 109 yv~Y 112 (119)
T 3h9d_A 109 YMKY 112 (119)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 341
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=59.57 E-value=9.9 Score=27.55 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=42.1
Q ss_pred EEEeeccchHHHHHHhhccccC-C---------CCCceEEEEcCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 166 TLEVESSDTIDNVKAKIQDKEG-I---------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 166 ~~~v~~~~tv~~lK~~i~~~~~-~---------~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
.++++. .||.+|.+.+...+. + ......+..||...... .-.+.-+++||.|.++--..||+
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~-~~~dt~L~dGDeVai~PpVsGG~ 88 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYL-QGLSTPLSPGATLDLFPPVAGGG 88 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGT-TGGGCBCCTTCEEEEECSCCSEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCc-CCCccCCCCCCEEEEECcccccc
Confidence 345555 899999999877641 1 02345666888876542 23455789999998887777775
No 342
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=59.42 E-value=14 Score=24.63 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=42.5
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhC-C-------CCCCcEEEE-cC----cccCC-Ccchhhhccc
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-I-------PPDQQRLIF-AG----KQLED-GRTLADYNIQ 138 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~-i-------~~~~q~L~~-~g----~~L~d-~~~L~~~~i~ 138 (230)
..+.|.+=.++|-.+.++++.++|+.++|+.+.++.. . .++...+.. +. .++.| .+.|.+...-
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 3345555568898899999999999999999988743 2 344444442 22 23544 4677776544
No 343
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=59.41 E-value=27 Score=22.72 Aligned_cols=55 Identities=5% Similarity=0.098 Sum_probs=39.0
Q ss_pred ceeEEEeeccchHHHHHHhhcc--c-cCCCCCceEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 026957 163 KTITLEVESSDTIDNVKAKIQD--K-EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 163 ~~~~~~v~~~~tv~~lK~~i~~--~-~~~~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~ 222 (230)
..+.+++++..||.++-+...- . ..+..+...+..+|+... .+.-+++||.|.+.
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIY 83 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEEC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEE
Confidence 4567788899999999776643 2 234455667777887666 44558899999875
No 344
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=59.36 E-value=29 Score=23.79 Aligned_cols=51 Identities=27% Similarity=0.415 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHhHhCCCC-------CCcEEEEcCcccCC--CcchhhhccccCCceEEEE
Q 026957 96 SDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLED--GRTLADYNIQKESTLHLVL 147 (230)
Q Consensus 96 ~~tV~~lK~~i~~~~~i~~-------~~q~L~~~g~~L~d--~~~L~~~~i~~~~~i~l~~ 147 (230)
..|..+|-..+..++|.+. ..++|+|.-- .+| .++|++.|+.+|+.+.+.-
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~D-fDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYD-FEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETT-BCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCC-ccccccCcHHHcCcCCCcEEEEEc
Confidence 4589998888888888653 2344444332 223 6799999999999887764
No 345
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=58.42 E-value=31 Score=22.44 Aligned_cols=57 Identities=5% Similarity=0.038 Sum_probs=39.9
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhh---hCCCCCceEEEeccccccCCCcccccccccccceeeee
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~---~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~ 71 (230)
...+.+++.++.||.++-+...-. ..|......+..+|+... .++-+.+|++|.+.-
T Consensus 25 q~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 25 YYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred CEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 346788999999999998855421 233444567778888876 455577888887753
No 346
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=58.22 E-value=10 Score=23.63 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=24.5
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026957 11 KTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
..+.+.|+++.+..+|..+|..++++.
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 467899999999999999999999875
No 347
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=57.83 E-value=1.9 Score=28.49 Aligned_cols=82 Identities=18% Similarity=0.300 Sum_probs=52.2
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcc-cccccccccceeeeeeecCceeeEEEeccCeeEe
Q 026957 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT 90 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~ 90 (230)
.+-..+.+-+....|++.|.+..|++++ .+.++..| .++|+.+=..+.+.......+.|.+...
T Consensus 17 ~~~~~m~~mei~~~l~~iiae~l~~~~~---------~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~------ 81 (101)
T 4dxe_H 17 NLYFQSNAMENFDKVKDIIVDRLGVDAD---------KVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDE------ 81 (101)
T ss_dssp -------CTTHHHHHHHHHHHTTCCCGG---------GCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHH------
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHCcChh---------hCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHH------
Confidence 3455667788899999999999999864 56777788 8899887777777665544444433211
Q ss_pred eecCCCChHHHHHHHHHhH
Q 026957 91 LEVESSDTIDNVKAKIQDK 109 (230)
Q Consensus 91 i~v~~~~tV~~lK~~i~~~ 109 (230)
.+..-.||+++-..|.++
T Consensus 82 -~l~~~~Tv~dl~~~I~~~ 99 (101)
T 4dxe_H 82 -EAEKINTVGDAVKFINSL 99 (101)
T ss_dssp -HHTTCCBHHHHHHHHC--
T ss_pred -HHHcCCCHHHHHHHHHHc
Confidence 134556899988877654
No 348
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=57.59 E-value=33 Score=29.75 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=45.4
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC--CCcEEEEcCc----ccCCCcchhh
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGK----QLEDGRTLAD 134 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g~----~L~d~~~L~~ 134 (230)
..+.+.|..++|....+.++..+|+.++-+.|+++.|+.. +..-|+.... .|.++..+.+
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 4577888889999999999999999999999999999874 3456654321 2555544443
No 349
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=57.54 E-value=27 Score=27.57 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=43.4
Q ss_pred ceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCc-EEE--Ec----CcccCCCcchhhh
Q 026957 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI--FA----GKQLEDGRTLADY 135 (230)
Q Consensus 76 ~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~--~~----g~~L~d~~~L~~~ 135 (230)
.+.+.|...+|....+.|++++|+++|-+.+..+.+.+...- .|+ +. -+.|+|...+.+.
T Consensus 31 k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dv 97 (281)
T 4gmv_A 31 KLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVEN 97 (281)
T ss_dssp EEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHH
T ss_pred cEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHH
Confidence 345667778899999999999999999999988887654433 333 22 1567777766654
No 350
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=57.33 E-value=39 Score=22.71 Aligned_cols=74 Identities=12% Similarity=0.190 Sum_probs=46.0
Q ss_pred CceeeEEEeccCe------eEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCcccCCCcchhhhcc---ccCCceE
Q 026957 75 GGMQIFVKTLTGK------TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNI---QKESTLH 144 (230)
Q Consensus 75 ~~~~v~v~~~~g~------~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~~L~~~~i---~~~~~i~ 144 (230)
+.+.|.|....+. .-.+-|+.+.||+++..-|.++..++++.-..+ .++.....+.++++.-- ..++.++
T Consensus 27 ~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLy 106 (117)
T 1eo6_A 27 DRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLY 106 (117)
T ss_dssp TEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEE
T ss_pred CeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEE
Confidence 4455666544331 224467778899999999999999988764444 45554455666666532 2355666
Q ss_pred EEEE
Q 026957 145 LVLR 148 (230)
Q Consensus 145 l~~~ 148 (230)
+...
T Consensus 107 i~Ys 110 (117)
T 1eo6_A 107 VAYS 110 (117)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
No 351
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=56.05 E-value=35 Score=23.02 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=47.7
Q ss_pred eeEeeecCCCChHHHHHHHHHhH--------hCCCCCCcEEEEcCccc--CCCcchhhhccccCCceEEE
Q 026957 87 KTITLEVESSDTIDNVKAKIQDK--------EGIPPDQQRLIFAGKQL--EDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~--------~~i~~~~q~L~~~g~~L--~d~~~L~~~~i~~~~~i~l~ 146 (230)
..+.+.+++..+.++|-+++-.- ..|.-+...+..+|+.. +.+++|++.|+...+.|.+.
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 35788999999999998877542 23677778899999887 45889999999998877654
No 352
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=55.50 E-value=28 Score=23.07 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=46.4
Q ss_pred eeEeeecCCCChHHHHHHHHHhHhCCCC--CCcEEEEcC---cccCCCcchhhhccccCCceEEE
Q 026957 87 KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 146 (230)
Q Consensus 87 ~~~~i~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g---~~L~d~~~L~~~~i~~~~~i~l~ 146 (230)
...++.|..+.-|+.+..++-++..++. ++--|-+.. ..+.-..+|..||++.++.+++.
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 5677888888899999999998877654 344555533 35788899999999999988664
No 353
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=55.48 E-value=23 Score=23.10 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=24.0
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHH
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
+|++...+|..+.+++.++.|+.+.=.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 588888999999999999999998655
No 354
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=54.72 E-value=21 Score=23.05 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=34.0
Q ss_pred CceeEEEeeccchHHHHHHhhccccCCCCCceEEE-EcCee
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 201 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g~~ 201 (230)
.+.+.+.|++.+|=.++|+.++..+++.+...+-. ..|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 36899999999999999999999999999887544 66653
No 355
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=54.68 E-value=27 Score=23.68 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=32.6
Q ss_pred EEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCCcccc
Q 026957 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 15 ~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~l~~ 58 (230)
.-|+.+.||+++...|.++.++++++-.++| ++.....+.++++
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 96 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMAD 96 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHH
Confidence 4688999999999999999999997755554 5554444455443
No 356
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=53.68 E-value=52 Score=25.50 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=39.0
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEc-------CcccCCCcchhhh
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLADY 135 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~-------g~~L~d~~~L~~~ 135 (230)
..|.|...+|....+.|+++.|+++|-+.+..+..++...-..++. -+.|+|...+-+.
T Consensus 9 ~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 9 QDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred eEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 4566777889999999999999999999998877654333322221 2567777766554
No 357
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=53.61 E-value=41 Score=23.15 Aligned_cols=45 Identities=9% Similarity=0.194 Sum_probs=33.3
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCceEEE-ecccccc-CCCcccc
Q 026957 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLE-DGRTLAD 58 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~-~~g~~l~-d~~~l~~ 58 (230)
..-|+.+.||+++...|.++.++++++-.++ |.+..+. .+.++++
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~ 102 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISE 102 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHH
Confidence 4568999999999999999999999876666 6554343 3444443
No 358
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=53.55 E-value=15 Score=22.65 Aligned_cols=79 Identities=11% Similarity=0.011 Sum_probs=52.7
Q ss_pred CCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChH
Q 026957 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
..+...+++.+.+..|+++.. .-..+.++..+.++|+.+=..+.+.......+.+.+... .+....||
T Consensus 4 ~~~~~~l~~il~~~l~~~~~~-----~~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~-------~~~~~~Tv 71 (86)
T 1af8_A 4 LLTTDDLRRALVECAGETDGT-----DLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDD-------VAGRVDTP 71 (86)
T ss_dssp SSCHHHHHHHHHTTCCCCSCC-----CTTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTT-------TTTTCCSH
T ss_pred HHHHHHHHHHHHHHhCCCccc-----ccccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHH-------HHHcCCCH
Confidence 467889999999999998741 001355667788999887777777766654444443211 12345689
Q ss_pred HHHHHHHHhHh
Q 026957 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
+++-..|.++.
T Consensus 72 ~~l~~~i~~~~ 82 (86)
T 1af8_A 72 RELLDLINGAL 82 (86)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99988877653
No 359
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=53.28 E-value=30 Score=23.70 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=32.5
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCCcccc
Q 026957 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~l~~ 58 (230)
..-|+.+.||+++...|.++..+++++-.++| ++.....+.++++
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~ 101 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGS 101 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHH
Confidence 34689999999999999999999997765555 4433333444443
No 360
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.90 E-value=26 Score=22.54 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=34.5
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEe--ccccccCCCcccccccccccceeeeeee
Q 026957 21 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~--~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
.+..||+.|..+.++++...-+|.+ +|-.++|+.-+... +..+..+++.+
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 4899999999999999865566665 58888765444333 34565655544
No 361
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=52.10 E-value=42 Score=21.13 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=45.6
Q ss_pred EEEEEecCCCcHHHHHHHhhhhh-CCC----CCceEEEecccc--ccCCCcccccccccccceeee
Q 026957 12 TITLEVESSDTIDNVKAKIQDKE-GIP----PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~-gi~----~~~q~l~~~g~~--l~d~~~l~~~~i~~~~~i~l~ 70 (230)
..-+.|+.++|+.++=+++.... |.. |.-.+...+|+. +.++-++++.||.+-..+.+.
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~ 81 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVV 81 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEE
Confidence 45678999999999999987763 322 224567788877 999999999999987776654
No 362
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=51.68 E-value=37 Score=21.06 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=37.8
Q ss_pred EEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE
Q 026957 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 155 i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~ 196 (230)
+.+..++++...+++.+..|+.+--.+..++-++.++.+..+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 667788999999999999999999888888889999988877
No 363
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=51.43 E-value=22 Score=31.66 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=37.6
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-ceEEEe
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF 45 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~-~q~l~~ 45 (230)
|.+.|..++|....+.+++..|+.++-+.|..+.|+... .-.|++
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 357788999999999999999999999999999998753 334444
No 364
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=51.35 E-value=43 Score=21.05 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=45.4
Q ss_pred EEEEEecCCCcHHHHHHHhhhhh-C--CC---CCceEEEecc--ccccCCCcccccccccccceeee
Q 026957 12 TITLEVESSDTIDNVKAKIQDKE-G--IP---PDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~-g--i~---~~~q~l~~~g--~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
..-+.|+.++|+.++=+++.-.. | ++ -+-.+...+| +.+.++.|+++-||.+-..+.+.
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~ 80 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDII 80 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEE
Confidence 45678999999999999987662 3 31 1235667888 88999999999999987776654
No 365
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=49.98 E-value=42 Score=21.58 Aligned_cols=60 Identities=12% Similarity=0.253 Sum_probs=37.4
Q ss_pred EEeeccchHHHHHHhhccccC-CCC---------Cce-------EEEEcCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026957 167 LEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 167 ~~v~~~~tv~~lK~~i~~~~~-~~~---------~~~-------~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
++++ ..||.+|.+.+..++. +.. ... .+..||+..... .-.+.-+++||+|.+.--..||
T Consensus 23 ~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 23 LPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-EGLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp EEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-TSTTSCCCTTEEEEEECCCSCC
T ss_pred EEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-CCCCCCCCCCCEEEEECCCCCC
Confidence 3444 5899999998877641 111 123 566788655321 1234568999999887666665
No 366
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=49.79 E-value=34 Score=21.93 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=32.8
Q ss_pred EEEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccc-cCCCccc
Q 026957 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQL-EDGRTLA 57 (230)
Q Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l-~d~~~l~ 57 (230)
-..-|+.+.|++++...|.++.++++++-.++| ++..+ ..+.+++
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~ 68 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVG 68 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHH
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHH
Confidence 356789999999999999999999987666665 44333 3344443
No 367
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=49.74 E-value=17 Score=22.61 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=29.4
Q ss_pred eEeeecCCCChHHHHHHHHHhHhCCC-----CCCcEEEEcC
Q 026957 88 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 123 (230)
Q Consensus 88 ~~~i~v~~~~tV~~lK~~i~~~~~i~-----~~~q~L~~~g 123 (230)
.+.+.++++.+..+|..+|.++++.. ....+|.|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 46788999999999999999999965 3556777765
No 368
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=49.59 E-value=37 Score=21.51 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=39.0
Q ss_pred eEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEE
Q 026957 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~ 197 (230)
.+.++.++++...++|.+..|+.+--.+..++-++.++.+..+.
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~ 52 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYR 52 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEE
Confidence 47788899999999999999999998888888899999888873
No 369
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=49.38 E-value=37 Score=22.23 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=33.6
Q ss_pred CcHHHHHHHhhhhhCCCCCc--eEEE--eccccccCCCcccccccccccceeeeeee
Q 026957 21 DTIDNVKAKIQDKEGIPPDQ--QRLI--FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~--q~l~--~~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
.+..+|+.|....++++... -+|. -+|-.++|+.-+... +..|..+++.+
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL---p~nT~lmvL~~ 90 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL---PSNTKFVALAC 90 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS---CSCCEEEEECS
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC---CCCCEEEEEcC
Confidence 58999999999999997632 3444 468888776544443 24455555543
No 370
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=47.98 E-value=37 Score=22.11 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=22.2
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHH
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|++...+|+.+.+++.+++|+.+.=.
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa~ 34 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVVV 34 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHH
Confidence 467766789999999999999987655
No 371
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=47.19 E-value=1.1e+02 Score=24.78 Aligned_cols=113 Identities=14% Similarity=0.192 Sum_probs=64.6
Q ss_pred cceeeeeeecCceeeEEEeccCeeEeeecCC-CChHHHHHHHHHhHhCCC----CCCcEEEEcCccc--------CCCcc
Q 026957 65 STLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEGIP----PDQQRLIFAGKQL--------EDGRT 131 (230)
Q Consensus 65 ~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~-~~tV~~lK~~i~~~~~i~----~~~q~L~~~g~~L--------~d~~~ 131 (230)
..+.+.+.-.....|+|...=.+.-.+.+.. ..||.+.-. ..-|+. .....|..+|+.. .+...
T Consensus 139 P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~tl~~ai~---~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~ 215 (359)
T 2j58_A 139 PQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPLTVMDAIN---AAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDL 215 (359)
T ss_dssp CCEEEEEEECCSCEEEEEESBSSCEEEECCSSCCBHHHHHH---HTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBG
T ss_pred CeEEEEEccCCceEEEEEceecCCeEEEeCCCCCcHHHHHH---HcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCc
Confidence 3444444444455666655434444556666 667766544 333432 3456777777532 23333
Q ss_pred hhhhccccCCceEEEEEeecceeEEEEeccCceeEEEee-ccchHHHHHHhh
Q 026957 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKI 182 (230)
Q Consensus 132 L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~-~~~tv~~lK~~i 182 (230)
-.++-+++|++|++--+ ....+.+.-.-++.-.++++ .+.|+.++-...
T Consensus 216 ~~~~~L~~GD~I~Vp~~--~~~~v~V~GeV~~pg~~~l~~~~~tl~eal~~A 265 (359)
T 2j58_A 216 TQNHLLYHGDILFIPSN--DDLKVFVMGEVGKQSTLKMDRSGMTLAEALGNA 265 (359)
T ss_dssp GGCCBCCTTCEEEECBG--GGCEEEEEESBSSCEEEECBTTBCBHHHHHHHT
T ss_pred ccceeccCCCeEEEeec--eeeeEEeeccccCcceEeecCCCCCHHHHHHhC
Confidence 44567899998877532 22335555444555678885 588998886654
No 372
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=47.19 E-value=20 Score=25.86 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=24.7
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCC
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 36 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi 36 (230)
.|.+ +.+|+.+.++++++.|+.++-+.....+|.
T Consensus 5 ~i~~-~vNG~~~~~~v~~~~tLLd~LR~~lgl~g~ 38 (166)
T 1n62_A 5 HIEL-TINGHPVEALVEPRTLLIHFIREQQNLTGA 38 (166)
T ss_dssp EEEE-EETTEEEEEEECTTCBHHHHHHHTSCCTTS
T ss_pred eEEE-EECCEEEEEecCCCCcHHHHHHHcCCCCcc
Confidence 4555 347999999999999999977654333333
No 373
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=46.99 E-value=45 Score=25.75 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=32.9
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
|.|-..+|.+.++.|++..|..+|-+.+..+.+++....
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTT
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCC
Confidence 445566888999999999999999999999999876544
No 374
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=46.45 E-value=39 Score=22.91 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhhhhCCCCC------ceEEE---ecccc--ccCCCcccccccccccceeeeee
Q 026957 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~------~q~l~---~~g~~--l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+..-+++.+..+.|+.+|+..+.++.+...+ .+.|. ++|.. |+++..--.-.+.-++++++..+
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 18 DHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp TSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred cCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3445678999999999999999999987654 56666 45633 45543333333555566666554
No 375
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=45.86 E-value=23 Score=25.31 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=28.7
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
++.+.+.|++++|=.|||+.|+..+|+.+..-
T Consensus 93 ~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kV 124 (156)
T 2zkr_s 93 NNTLVFIVDVKANKHQIKQAVKKLYDIDVAKV 124 (156)
T ss_dssp HCEEEEEECTTCCHHHHHHHHHHHHCCCEEEE
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHhCCcceEE
Confidence 36899999999999999999999999997554
No 376
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=45.68 E-value=17 Score=24.07 Aligned_cols=70 Identities=23% Similarity=0.347 Sum_probs=52.0
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCC--CceEEEecc---ccccCCCcccccccccccceeeeee
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVLR 72 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~--~~q~l~~~g---~~l~d~~~l~~~~i~~~~~i~l~~~ 72 (230)
+|+|...+ ...++.|.-+.-|+-+-.++.+...++. ++--|.+.. ..+....||..||+..++.++....
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC-
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecCC
Confidence 35554443 7788899988999999999998887775 333455433 4478889999999999998877644
No 377
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=44.68 E-value=23 Score=25.43 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=25.1
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
.|.+ +.+|+.+.++++|+.|+.++-+.....+|.+
T Consensus 5 ~i~~-~vNG~~~~~~v~~~~tLLd~LR~~lgltg~k 39 (163)
T 1ffv_A 5 IITV-NVNGKAQEKAVEPRTLLIHFLREELNLTGAH 39 (163)
T ss_dssp EEEE-EETTEEEEEEECTTCBHHHHHHHTSCCTTSC
T ss_pred eEEE-EECCEEEEEecCCCCcHHHHHHhcCCCcccc
Confidence 4555 3589999999999999999776543333433
No 378
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=44.29 E-value=27 Score=22.46 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=32.9
Q ss_pred CceeEEEeeccchHHHHHHhhccccCCCCCceEEE-EcCe
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 200 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g~ 200 (230)
.+.+.+.|+..+|=.++|+.++..+++.+...+-. ..|+
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 37899999999999999999999999988877543 5653
No 379
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=43.98 E-value=27 Score=24.73 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=29.2
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceE
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
.+.+.+.|++.+|=.++|+.|+..+++.+..-.
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVN 119 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVN 119 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEE
Confidence 468999999999999999999999999975543
No 380
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=43.86 E-value=56 Score=21.65 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=32.1
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCCcccc
Q 026957 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~l~~ 58 (230)
..-|+.+.||+++...|..+.++++++-.++| ++.....+.++++
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 92 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQ 92 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHH
Confidence 34678899999999999999999997665555 4443333444443
No 381
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=43.75 E-value=25 Score=24.61 Aligned_cols=31 Identities=6% Similarity=0.097 Sum_probs=28.3
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026957 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
+.+.+.|++.+|=.++|+.|+..+++.+..-
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kV 110 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKV 110 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEE
Confidence 6899999999999999999999999997554
No 382
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=43.15 E-value=60 Score=20.38 Aligned_cols=60 Identities=20% Similarity=0.330 Sum_probs=46.4
Q ss_pred eEEEeeccchHHHHHHhhcccc-C--CC--CC-ceEEEEcC--eecCCCCcccccCCCCCCEEEEEEE
Q 026957 165 ITLEVESSDTIDNVKAKIQDKE-G--IP--PD-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 165 ~~~~v~~~~tv~~lK~~i~~~~-~--~~--~~-~~~l~~~g--~~l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
.-+.|+..+|+.++=+++.-.. | ++ |. ..+..++| ..+..+.|+.+-||.+-+.|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 3467888899999988876644 3 32 22 45677888 8899999999999999999988753
No 383
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=43.03 E-value=62 Score=20.52 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=31.8
Q ss_pred CEEEEEcCCCcEE-EEEecCCCcHHHHHHHhhhhhCCCCC
Q 026957 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (230)
++|.+...+|..+ +|.+...+....+-++.-.+++++.+
T Consensus 6 iRVs~d~~~gn~YKSI~ltsqDrtp~vI~~al~Khnl~~~ 45 (87)
T 1lfd_A 6 IRVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDED 45 (87)
T ss_dssp EEEEESSCSSEEEEEEEEETTCBHHHHHHHHHHHTTCCSS
T ss_pred EEEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCC
Confidence 3677777778766 69999999999999988899999843
No 384
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=42.11 E-value=49 Score=21.56 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=22.0
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHH
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|++...+|..+.+++.+++|+.+.=.
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~aa~ 33 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHLAQ 33 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHH
Confidence 466666789999999999999988654
No 385
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=41.82 E-value=28 Score=25.00 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=22.6
Q ss_pred CEEEEEcCCCcEEEEEecCCCcHHHHHHHh
Q 026957 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i 30 (230)
|.|.+ +.+|+.+.++++++.|+.+.-...
T Consensus 10 m~i~~-~ing~~~~~~v~~~~tlL~~Lr~~ 38 (168)
T 1t3q_A 10 MRISA-TINGKPRVFYVEPRMHLADALREV 38 (168)
T ss_dssp EEEEE-EETTEEEEEEECTTSBHHHHHHHT
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHHhc
Confidence 34555 347999999999999999877653
No 386
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.74 E-value=34 Score=21.96 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=32.9
Q ss_pred chHHHHHHhhccccCCCCCceEEE--EcCeecCCCCcccccCCCCCCEEEEEEE
Q 026957 173 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 173 ~tv~~lK~~i~~~~~~~~~~~~l~--~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
.+..+|+.+.+++..++....+|+ .+|.+++|+.-++. -+..++.+++.
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~t---Lp~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQT---LGDNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTT---SCSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhh---CCCCCEEEEEc
Confidence 379999999999999876667776 36888876543333 23444445444
No 387
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=41.58 E-value=79 Score=21.31 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=45.0
Q ss_pred eeEEEeeccchHHHHHHhhccc-cC-------CCCCceEEEEcCeec--CCCCcccccCCCCCCEEEEE
Q 026957 164 TITLEVESSDTIDNVKAKIQDK-EG-------IPPDQQRLIFAGKQL--EDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 164 ~~~~~v~~~~tv~~lK~~i~~~-~~-------~~~~~~~l~~~g~~l--~d~~~L~~~~i~~~~~i~~~ 222 (230)
-+.+-+++.++..+|-+.+-.- ++ +.-+.-.+..+|+.. +.+++|.+.|+..-|.|.+.
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 3668889999999997766442 23 344455778889876 67899999999999988765
No 388
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=41.34 E-value=30 Score=24.79 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=21.9
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHH
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
.|.+ ..+|+.+.++++|+.|+.++-+.
T Consensus 5 ~i~~-~vNG~~~~v~v~p~~tLLd~LR~ 31 (160)
T 3hrd_D 5 TINL-NLNGEARSIVTEPNKRLLDLLRE 31 (160)
T ss_dssp EEEE-EETTEEEEEEECSSSBHHHHHHT
T ss_pred eEEE-EECCEEEEEecCCCCCHHHHHHH
Confidence 5566 45799999999999999997653
No 389
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=41.23 E-value=59 Score=25.57 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=44.1
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec-------cccccCCCccc----ccccccccceee
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLA----DYNIQKESTLHL 69 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~-------g~~l~d~~~l~----~~~i~~~~~i~l 69 (230)
|.|=..+|...+|.|++++|.+||-+.+..+.+.+...-..++. -+.|.|+..+. .+....++.+.+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 34445578999999999999999999998888876444333332 15567765543 344444444444
No 390
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=40.86 E-value=38 Score=30.22 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=39.9
Q ss_pred CceeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCC-CCcEEEE
Q 026957 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 121 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~ 121 (230)
..+.+.|..++|....+.++..+|+.++-..|+.+.|+.. ...-|.+
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 4578889999999999999999999999999999999654 3456654
No 391
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=40.73 E-value=68 Score=20.31 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=36.8
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026957 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
.+.+..++++.-.++|.+..|+.+--.+..++.++.++....+
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 3455678888889999999999999999999999998877766
No 392
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=40.70 E-value=41 Score=23.99 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=25.0
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
|.+ +.+|+.+.++++++.|+.++-......+|.+
T Consensus 5 i~~-~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k 38 (161)
T 1rm6_C 5 LRL-TLNGRAREDLVPDNMLLLDYLRETVGLTGTK 38 (161)
T ss_dssp EEE-EETTEEEEEEEETTCBHHHHHHHTTCCTTSC
T ss_pred EEE-EECCEEEEEecCCcCcHHHHHHHcCCCcccc
Confidence 444 3489999999999999999877654344433
No 393
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=39.72 E-value=62 Score=24.92 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=34.2
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCc
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q 117 (230)
+.|.|...+|....+.|+++.|+.++-+.+..+.+++....
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTT
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCC
Confidence 44666678888899999999999999999999999766543
No 394
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=39.52 E-value=70 Score=21.44 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=32.1
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCCcccc
Q 026957 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~l~~ 58 (230)
..-|+.+.||+++...|..+.++++++-.++| ++.....+.++++
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 93 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQ 93 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHH
Confidence 34678899999999999999999997765555 4443333444443
No 395
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=39.49 E-value=67 Score=19.88 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=36.3
Q ss_pred eEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026957 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 79 v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
+.+..++++.-.+++.+..|+.+--.+.-++.++.++....+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 455678898889999999999999999999999988877665
No 396
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=39.29 E-value=22 Score=22.53 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=30.7
Q ss_pred CceeEEEeeccchHHHHHHhhccccCCCCCceEEE
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~ 196 (230)
.+.+.+.|++.+|=.++|+.++..+++.+...+-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~ 56 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQ 56 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEee
Confidence 46799999999999999999999999988776544
No 397
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=38.92 E-value=75 Score=20.31 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.3
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHH
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|++...+|....+++.+++|+.+.=.
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~ 31 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAH 31 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHH
Confidence 467765789889999999999998765
No 398
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=37.75 E-value=92 Score=20.95 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=31.7
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCceEEEe-ccccccCCCccc
Q 026957 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLA 57 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~-~g~~l~d~~~l~ 57 (230)
..-|+.+.||+++...|.++.++++++-.++| ++.....+.+++
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~ 94 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMS 94 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHH
Confidence 34589999999999999999999987655555 443333344443
No 399
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=37.36 E-value=6.1 Score=25.88 Aligned_cols=75 Identities=11% Similarity=0.206 Sum_probs=51.2
Q ss_pred CCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChH
Q 026957 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
.+....|++.|.+..+++++ .+.++..|.++|+.+=..+.+.......+.+.+... .+....||
T Consensus 16 ~~i~~~l~~ila~~l~v~~~---------~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~i~~~-------~l~~~~TV 79 (100)
T 1vku_A 16 KKLIAKFVEIASEKMGKDLE---------TVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDE-------EISKIRKV 79 (100)
T ss_dssp HHHHHHHHHHHHHTTCCCCC---------SCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHH-------HHTTCCBH
T ss_pred HHHHHHHHHHHHHHHCCCHH---------HCCCCCCHHHcCCchHHHHHHHHHHHHHHCCCCCHH-------HHHcCCCH
Confidence 34567899999999998874 467778889999877666666665544333333211 13445699
Q ss_pred HHHHHHHHhHh
Q 026957 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
++|-..|..+.
T Consensus 80 ~~L~~~I~~~~ 90 (100)
T 1vku_A 80 KDLIDIVIKKL 90 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99988887764
No 400
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=36.96 E-value=66 Score=20.72 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=22.5
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHH
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|++...+|....+++.+++|+.+.=.
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~ 28 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAV 28 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 467767789889999999999988655
No 401
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=36.83 E-value=18 Score=26.58 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=28.5
Q ss_pred CcEEEEEecCCCcHHHHHHHhhhhhCCCCCce
Q 026957 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (230)
Q Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q 41 (230)
++.+.+.|++++|=.|||+.|+..+|+.+..-
T Consensus 131 nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kV 162 (198)
T 3bbo_V 131 ENSLLFTVDVRADKKMIREAISNFFGVKVRKV 162 (198)
T ss_dssp SCEECCEECTTCCHHHHHHTTTTTSCCCEEEC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeEE
Confidence 46899999999999999999999999987543
No 402
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=36.82 E-value=87 Score=20.44 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=34.2
Q ss_pred EEEEcC-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEecc
Q 026957 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (230)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g 47 (230)
|.||.. .|+.+.+.++.--+..||.+++....|-+. -|.|..
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~l---dL~y~n 51 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSM---DLHYTN 51 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCE---EEEECS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCee---eEEEec
Confidence 444444 689999999999999999999999999865 566653
No 403
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=43.00 E-value=7.3 Score=25.62 Aligned_cols=73 Identities=15% Similarity=0.265 Sum_probs=48.1
Q ss_pred cHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHH
Q 026957 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~ 101 (230)
....|++.|.+..+++++ .+.++..|.++|+.+=..+.+.......+.+.+... .+....||++
T Consensus 27 i~~~l~~ila~~l~i~~~---------~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~-------~l~~~~TV~~ 90 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKE---------EISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDD-------ELDLLETVDE 90 (103)
Confidence 556788888888888763 356777788899877777777766655554444211 1233458888
Q ss_pred HHHHHHhHh
Q 026957 102 VKAKIQDKE 110 (230)
Q Consensus 102 lK~~i~~~~ 110 (230)
|-..|.++.
T Consensus 91 l~~~I~~~~ 99 (103)
T 2lte_A 91 LFQLVEKHR 99 (103)
Confidence 877776553
No 404
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=36.51 E-value=86 Score=20.42 Aligned_cols=87 Identities=6% Similarity=0.068 Sum_probs=50.0
Q ss_pred CCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCCh
Q 026957 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 98 (230)
Q Consensus 19 ~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~t 98 (230)
...=..++-+.+.+..|.|++.+.+.+.. +..+. ..++ ..+-.-+.|+...|++..- ...-
T Consensus 16 ~~~l~~~~~~~l~~~lgkP~~~~~v~~~~-----~~~~~----~~g~-------~~~~~~v~i~~~~g~~~eq---k~~l 76 (115)
T 1uiz_A 16 PDTLLSDLTKQLAKATGKPAEYIAIHIVP-----DQIMS----FGDS-------TDPCAVCSLCSIGKIGGPQ---NKSY 76 (115)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEEC-----SCEEE----ETTB-------CSSCEEEEEEESSCCSHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHCcChhHEEEEEEC-----CcceE----ECCC-------CCCeEEEEEEEecCCCHHH---HHHH
Confidence 34457778888899999999988777632 11110 1111 1222334444343332100 0124
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEEcCc
Q 026957 99 IDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 99 V~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
...+-+.+++..|+|+++..+.+...
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (115)
T 1uiz_A 77 TKLLCDILTKQLNIPANRVYINYYDL 102 (115)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEEC
Confidence 56666777888999999988876543
No 405
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=36.26 E-value=81 Score=20.54 Aligned_cols=83 Identities=16% Similarity=0.198 Sum_probs=46.4
Q ss_pred HHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHHH
Q 026957 23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 102 (230)
Q Consensus 23 v~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~l 102 (230)
+.++-+.+.+.+|.|++.+.+.+. ++..+. ..++ ..+-..+.|+...|++..- ...-+..+
T Consensus 20 ~~~~~~~l~~~lgkp~~~~~v~~~-----~~~~~~----~~g~-------~~~~~~v~i~~~~g~t~eq---k~~l~~~i 80 (115)
T 2xcz_A 20 LQELSSKLAELLGKPEKYVMTSLQ-----CGVPMT----FSGN-------TEPTCYVEVKSIGALDGSR---TQEVSELV 80 (115)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEE-----CSCCCC----BTTB-------CSSCEEEEEEESSCCCTTH---HHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHEEEEEE-----CCCceE----ECCC-------CCcEEEEEEEEecCCCHHH---HHHHHHHH
Confidence 455566677778999998777653 211111 1111 1222334444333332100 01246677
Q ss_pred HHHHHhHhCCCCCCcEEEEcCc
Q 026957 103 KAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 103 K~~i~~~~~i~~~~q~L~~~g~ 124 (230)
-+.+++..|+|+++..+.+...
T Consensus 81 ~~~l~~~lgi~~~~v~I~~~e~ 102 (115)
T 2xcz_A 81 CGHIEQNLGIPADRIYIGFEDV 102 (115)
T ss_dssp HHHHHHHHCCCGGGEEEEEEEC
T ss_pred HHHHHHHhCcCcccEEEEEEEC
Confidence 7788888999999988876543
No 406
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=36.20 E-value=29 Score=24.59 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=28.7
Q ss_pred cEEEEEecCCCcHHHHHHHhhhhhCCCCCceE
Q 026957 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (230)
Q Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~ 42 (230)
+.+.+.|++++|=.++|+.|+..+++.+..-.
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVN 121 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVN 121 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEE
Confidence 68999999999999999999999999975543
No 407
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=36.07 E-value=83 Score=20.34 Aligned_cols=45 Identities=11% Similarity=0.029 Sum_probs=39.0
Q ss_pred eEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEEEc
Q 026957 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198 (230)
Q Consensus 154 ~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~ 198 (230)
.+.+..++++...++|.+..|+.+--.+..+.-++.++.+..+..
T Consensus 15 ~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~ 59 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRI 59 (96)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEC
T ss_pred EEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEc
Confidence 467788899999999999999999988888888999998888743
No 408
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=35.29 E-value=46 Score=20.53 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=40.3
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeee
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~ 70 (230)
+|+|.+.+|..+ ++..+.|+.|+=..|....|-. .---..+|+..+- ++.+.+++.+.+.
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~--~v~AkVNG~~v~L-----~~~L~~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNR--MIGAKVDGRIVPI-----DYKVKTGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHT--EEEEEETTEEECT-----TCBCCTTCBEEEE
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcc--eEEEEECCEEcCC-----CcccCCCCEEEEE
Confidence 588999988764 5788999999988886655422 1223457766543 3456677776664
No 409
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=34.45 E-value=90 Score=19.88 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=38.1
Q ss_pred EeeecCCCChHHHHHHHHHhHhCCCCCCcEEE-EcCccc-CCCcchhhhcc--ccCCceEEE
Q 026957 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADYNI--QKESTLHLV 146 (230)
Q Consensus 89 ~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L-~d~~~L~~~~i--~~~~~i~l~ 146 (230)
-.+.|+.+.||+++..-|.++..+++++--.+ .++..+ ..+.++++.-- ..++.+++.
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~ 83 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLH 83 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEE
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEE
Confidence 35678889999999999999999988765444 455433 44556554321 144445443
No 410
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=34.15 E-value=35 Score=22.08 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=31.7
Q ss_pred ceeEEEeeccchHHHHHHhhccccCCCCCceEEE-EcC
Q 026957 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 199 (230)
Q Consensus 163 ~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~-~~g 199 (230)
..+.+.|++.+|=.++|+.++..+++.+...+-. ..|
T Consensus 23 n~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~g 60 (95)
T 2zjr_Q 23 GVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPG 60 (95)
T ss_dssp TCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCC
Confidence 3499999999999999999999999998887554 555
No 411
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=33.80 E-value=7.1 Score=23.90 Aligned_cols=74 Identities=14% Similarity=0.320 Sum_probs=46.9
Q ss_pred CCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcc-cccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCCh
Q 026957 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 98 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~t 98 (230)
.+....+++.+.+..|++++ .+.++..+ .++|+.+=..+.+.........+.+... .+....|
T Consensus 6 ~~i~~~l~~~i~~~l~~~~~---------~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~-------~~~~~~T 69 (82)
T 2cnr_A 6 EEIVAGLAEIVNEIAGIPVE---------DVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDD-------DVKNLKT 69 (82)
T ss_dssp HHHHHHHHHHHHHHSCCCTT---------TCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGG-------GGGTCSB
T ss_pred HHHHHHHHHHHHHHhCCCHH---------HCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHH-------HHHHcCC
Confidence 34556788888888888763 45666777 6888876666666555543333333211 2344568
Q ss_pred HHHHHHHHHhH
Q 026957 99 IDNVKAKIQDK 109 (230)
Q Consensus 99 V~~lK~~i~~~ 109 (230)
|+++-+.|.++
T Consensus 70 v~~l~~~i~~~ 80 (82)
T 2cnr_A 70 VGDATKYILDH 80 (82)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 412
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=33.54 E-value=59 Score=20.97 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=22.5
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHH
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|++...+|....+++.+++|+.+.=.
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa~ 28 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAAR 28 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 577777789889999999999988655
No 413
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.36 E-value=34 Score=21.71 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=30.7
Q ss_pred CceeEEEeeccchHHHHHHhhccccCCCCCceEEE
Q 026957 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 162 ~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~ 196 (230)
.+.+.+.|+...+=.++|+.++..+++.+...+-.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl 57 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTL 57 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEe
Confidence 46899999999999999999999999988776554
No 414
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=33.32 E-value=98 Score=19.96 Aligned_cols=44 Identities=11% Similarity=0.042 Sum_probs=38.2
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
..+.+..++++.-.+++.+..|+.+--.+..+..++.++....+
T Consensus 18 ~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 18 PIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred cEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 35667788999899999999999999999999999988877666
No 415
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=32.40 E-value=82 Score=20.72 Aligned_cols=87 Identities=10% Similarity=0.139 Sum_probs=51.3
Q ss_pred CCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCCh
Q 026957 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 98 (230)
Q Consensus 19 ~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~t 98 (230)
...=..++-+.+.+.+|.|++.+.+.+.. +..+. ++ ++. .+-..+.|+...|++..- ...-
T Consensus 16 ~~~l~~~~~~~l~~~lgkP~~~~~v~~~~-----~~~~~-~~---g~~-------~~~~~i~I~~~~g~~~eq---k~~l 76 (119)
T 2os5_A 16 PANFEERLTDLLAESMNKPRNRIAIEVLA-----GQRIT-HG---ASR-------NPVAVIKVESIGALSADD---NIRH 76 (119)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEEC-----SCCCC-BT---TBC-------SSCEEEEEEESSCCCHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHCcChHHEEEEEEC-----CccEE-Ec---CCC-------CCeEEEEEEEecCCCHHH---HHHH
Confidence 45557788888999999999988877732 11111 11 111 122234444444432110 0124
Q ss_pred HHHHHHHHHhHhCCCCCCcEEEEcCc
Q 026957 99 IDNVKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 99 V~~lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
+..+-+.+++..|+|+++..+.+...
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (119)
T 2os5_A 77 TQKITQFCQDTLKLPKDKVIITYFDL 102 (119)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEEC
Confidence 56666777888999999988876544
No 416
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=31.85 E-value=1.3e+02 Score=21.00 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=42.9
Q ss_pred EEEEEecCCCcHHHHHHHhhhhhCC-CCCceEEEec---------------------ccc-ccCCCccccccccccccee
Q 026957 12 TITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---------------------GKQ-LEDGRTLADYNIQKESTLH 68 (230)
Q Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~gi-~~~~q~l~~~---------------------g~~-l~d~~~l~~~~i~~~~~i~ 68 (230)
.+-|-...++|+.||-..|.+..-- +...=+|.|. |+. -+|++||++.+..-|+-|.
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyid 134 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLD 134 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEE
Confidence 3566678999999999988877421 1111233332 211 2567999999999999888
Q ss_pred eeeeecC
Q 026957 69 LVLRLRG 75 (230)
Q Consensus 69 l~~~~~~ 75 (230)
+.+.++.
T Consensus 135 vaI~pP~ 141 (143)
T 4a6q_A 135 IAITPPN 141 (143)
T ss_dssp EEEECGG
T ss_pred EEEeCCC
Confidence 8877653
No 417
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=31.40 E-value=61 Score=19.51 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=20.8
Q ss_pred cchhhhccccCCceEEEEEeecceeEEEEe
Q 026957 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKT 159 (230)
Q Consensus 130 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~ 159 (230)
+.|.+.|+.+|+.|.+.-+.+.| .+.++.
T Consensus 29 ~rL~~lGi~~G~~v~v~~~~p~g-p~~v~v 57 (77)
T 3e19_A 29 QKLVSMGLTPGATIQVLESHPMG-PIIISV 57 (77)
T ss_dssp HHHHTTTCSTTCEEEEEEC--CC-CEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEecCCC-CEEEEE
Confidence 57899999999999988765555 555553
No 418
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=31.32 E-value=66 Score=21.81 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=22.7
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHH
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|++...+|....+++.+++|+.+.=.
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa~ 49 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAAI 49 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 577776789899999999999998654
No 419
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=31.04 E-value=58 Score=25.88 Aligned_cols=35 Identities=9% Similarity=0.254 Sum_probs=29.3
Q ss_pred CEEEEEcCCCcEEEEEecC--CCcHHHHHHHhhhhhCCCCC
Q 026957 1 MQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPD 39 (230)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~--~~tv~~lK~~i~~~~gi~~~ 39 (230)
++|.|-.++|....++++. .+|+.++-+ ..|++..
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~e----~lgL~~~ 42 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIME----GMRLSQE 42 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHHT----TSSCCTT
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHHH----HhCcCcc
Confidence 4688989999999999999 999999943 4788753
No 420
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=30.20 E-value=8.3 Score=24.93 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=52.9
Q ss_pred EEEecCCCcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcc-cccccccccceeeeeeecCceeeEEEeccCeeEeee
Q 026957 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE 92 (230)
Q Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~ 92 (230)
......++....|++.|.+..|++++ .+.++..| .++|+.+=..+.+.......+.|.+... .
T Consensus 15 ~~~~t~~~i~~~l~~iia~~l~~~~~---------~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~-------~ 78 (97)
T 3ejb_A 15 PRGSHMSTIEERVKKIIGEQLGVKQE---------EVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDE-------E 78 (97)
T ss_dssp ---CCCCCHHHHHHHHHHHHSCCCTT---------TSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHH-------H
T ss_pred CCCCCHHHHHHHHHHHHHHHHCcCHH---------HCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHH-------H
Confidence 34456677888999999999999874 46777778 6999887777777666544444433211 1
Q ss_pred cCCCChHHHHHHHHHhH
Q 026957 93 VESSDTIDNVKAKIQDK 109 (230)
Q Consensus 93 v~~~~tV~~lK~~i~~~ 109 (230)
+....||++|-..|.++
T Consensus 79 l~~~~Tv~~l~~~i~~~ 95 (97)
T 3ejb_A 79 AEKITTVQAAIDYINGH 95 (97)
T ss_dssp HHHCCBHHHHHHHHHHC
T ss_pred HHhCCCHHHHHHHHHHh
Confidence 22345888888877654
No 421
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=30.12 E-value=1.2e+02 Score=19.85 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=34.6
Q ss_pred eeeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcCcc
Q 026957 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 125 (230)
Q Consensus 77 ~~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~ 125 (230)
++|++. ..|.+..+.++..-+..+|.+++...+|- .+.|.|.+.+
T Consensus 9 vRiKfE-~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq---~ldL~y~n~E 53 (103)
T 2cu1_A 9 VRVKFE-HRGEKRILQFPRPVKLEDLRSKAKIAFGQ---SMDLHYTNNE 53 (103)
T ss_dssp EEEEEE-ETTEEEEEEEESSCCHHHHHHHHHHHHSS---CEEEEECSSS
T ss_pred EEEEEE-ecCeEEEEeccCCccHHHHHHHHHHHhCC---eeeEEEecce
Confidence 444443 56888999999999999999999999996 3456665543
No 422
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=29.80 E-value=42 Score=23.53 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=33.2
Q ss_pred CcHHHHHHHhhhhhCCCCC--ceEEEe--ccccccCCCcccccccccccceeeeeee
Q 026957 21 DTIDNVKAKIQDKEGIPPD--QQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~--~q~l~~--~g~~l~d~~~l~~~~i~~~~~i~l~~~~ 73 (230)
.+..||+.|..+.++++.. .-+|.+ +|-.++|+.-+... +..+..+++.+
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tL---p~nT~LmvL~~ 135 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCL---PSNTKFVALAS 135 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHS---CSSCBEEEECS
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcC---CCCCEEEEECC
Confidence 5899999999999999763 445554 68888765444332 24455555443
No 423
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=29.37 E-value=68 Score=21.44 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=30.4
Q ss_pred CEEEEEcCCCcEE-EEEecCCCcHHHHHHHhhhhhCCCC
Q 026957 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (230)
++|.+...+|..+ +|.+...|....+-++.-++++++.
T Consensus 31 IRVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~ 69 (115)
T 1rax_A 31 IRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEE 69 (115)
T ss_dssp EEEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTT
T ss_pred EEEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCC
Confidence 3667766677765 6899999999998888888999884
No 424
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=29.01 E-value=93 Score=24.04 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=35.2
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceEEEec-------cccccCCCccc
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLA 57 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~l~~~-------g~~l~d~~~l~ 57 (230)
|.|=..+|...+|.|++++|+.||-+.+..+.+.+...-..++- -+.|+|+..+.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ 72 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVV 72 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHH
Confidence 34445678999999999999999999998887765443333332 25677765543
No 425
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=28.95 E-value=75 Score=20.21 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=31.9
Q ss_pred EEEEEcCCC--cEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026957 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPP 38 (230)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gi~~ 38 (230)
+|+|..... .++.+++..-|-+..|-+++....++.+
T Consensus 7 rITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~ 45 (88)
T 3cjl_A 7 QITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTP 45 (88)
T ss_dssp EEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCH
T ss_pred EEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCH
Confidence 688887754 7899999999999999999988888775
No 426
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=28.03 E-value=1.1e+02 Score=19.04 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=21.1
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHH
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
.|++...+| ...+++.+++|+.+.=..
T Consensus 2 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 28 (94)
T 1awd_A 2 KVTLKTPSG-EETIECPEDTYILDAAEE 28 (94)
T ss_dssp EEEEEETTE-EEEEECCTTSCHHHHHHH
T ss_pred EEEEEeCCC-cEEEEECCCCcHHHHHHH
Confidence 577766666 688999999999987663
No 427
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=27.68 E-value=1.1e+02 Score=18.96 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHH
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|++...+| ...+++.+++|+.+.=.
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~~ 28 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAAE 28 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHHH
Confidence 567765666 78899999999998765
No 428
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=26.80 E-value=1.4e+02 Score=19.76 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=45.0
Q ss_pred HHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeEEEeccCeeEeeecCC-CChHHH
Q 026957 23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDN 101 (230)
Q Consensus 23 v~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~-~~tV~~ 101 (230)
..++-+.+.+.+|.|.+.+.+.+.. +..+ ...++. .+-.-|.|+...|.+. +. ..-+..
T Consensus 20 ~~~l~~ala~~lgkPe~~~~V~~~~-----~~~~----~~gg~~-------dp~~~v~I~~~~g~t~----eqk~~l~~~ 79 (125)
T 2wkb_A 20 LSEIEDAISNILGKPVAYIMSNYDY-----QKNL----RFSGSN-------EGYCFVRLTSIGGINR----SNNSLLADK 79 (125)
T ss_dssp HHHHHHHHHHHHCSCCTTCEEEEEE-----CTTC----EETTBC-------SSCEEEEEECC---------CTHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEEc-----CCce----EeCCCC-------CCcEEEEEEECCCCCH----HHHHHHHHH
Confidence 3455566777899999988877641 1111 011111 2223344444444321 11 124677
Q ss_pred HHHHHHhHhCCCCCCcEEEEcCc
Q 026957 102 VKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 102 lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
+-+.+++..|+|+++..+.+...
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e~ 102 (125)
T 2wkb_A 80 ITKILSNHLSVKPRRVYIEFRDC 102 (125)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEC-
T ss_pred HHHHHHHHhCcCcceEEEEEEEC
Confidence 77788889999999988776543
No 429
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=26.61 E-value=14 Score=23.30 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=46.4
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccc-cccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChH
Q 026957 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD-YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~-~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
.|...|++-+.+.+++++. .+.++.++.+ +|+.+=..+.+.......+.|.+.. -.+....||
T Consensus 2 ~tle~l~~I~~e~l~~d~~---------~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i~~-------~~l~~~~TV 65 (87)
T 2kjs_A 2 PTLDALTPIFRQVFDDDSI---------VLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFAL-------GELQKLKNV 65 (87)
T ss_dssp CSHHHHHHHHHHHHTCSSC---------CCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCCCH-------HHHTTCCSH
T ss_pred chHHHHHHHHHHHhCCCcc---------ccCCCCCcccCCCCChHHHHHHHHHHHHHhCceecH-------HHHHcCCCH
Confidence 4788999999999999874 4666666665 5666555555554443333222211 123345689
Q ss_pred HHHHHHHHhHh
Q 026957 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
+++-..|.++.
T Consensus 66 ~dl~~~I~~kl 76 (87)
T 2kjs_A 66 GDLADLVDKKL 76 (87)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 430
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=26.06 E-value=36 Score=20.58 Aligned_cols=74 Identities=19% Similarity=0.247 Sum_probs=47.0
Q ss_pred cHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHH
Q 026957 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~ 101 (230)
....+++.+.+..|++++ ..+.++..|.++|+.+=..+.+.......+.+.+... .+....||++
T Consensus 5 i~~~l~~i~~~~l~~~~~--------~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~i~~~-------~~~~~~Tv~~ 69 (82)
T 2ava_A 5 TIDKVSDIVKEKLALGAD--------VVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDED-------KAQDISTIQQ 69 (82)
T ss_dssp HHHHHHHHHHHHTTCSSS--------SCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCCGG-------GSSSCCSHHH
T ss_pred HHHHHHHHHHHHhCCCcc--------cccCCCCchhhcCCCHHHHHHHHHHHHHHHCCccCHH-------HHHhCCCHHH
Confidence 456788888889998763 2466777788888876666666555443333332111 1344568998
Q ss_pred HHHHHHhHh
Q 026957 102 VKAKIQDKE 110 (230)
Q Consensus 102 lK~~i~~~~ 110 (230)
+-..|.+..
T Consensus 70 l~~~i~~~~ 78 (82)
T 2ava_A 70 AADVIEGLL 78 (82)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776543
No 431
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=25.17 E-value=53 Score=20.41 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=17.6
Q ss_pred CcccccCCCCCCEEEEEEEecCC
Q 026957 206 RTLADYNIQKESTLHLVLRLRGG 228 (230)
Q Consensus 206 ~~L~~~~i~~~~~i~~~~~~~~g 228 (230)
+.|.+.|+.+|+.|.+.-+..-|
T Consensus 24 rrL~~mGl~pG~~V~Vi~~ap~g 46 (83)
T 2lx9_A 24 QKLLSLGMLPGSSFNVVRVAPLG 46 (83)
T ss_dssp HHHHHSSCCSSSEEEEEEECTTT
T ss_pred HHHHHCCCCCCCEEEEEEeCCCC
Confidence 46788888899988888776543
No 432
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=24.92 E-value=1e+02 Score=19.82 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=37.8
Q ss_pred EEEe-eccchHHHHHHhhccccCCCCCceEEEEcCeec-CCCCcccccCCCCCCEEEEEEE
Q 026957 166 TLEV-ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLR 224 (230)
Q Consensus 166 ~~~v-~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g~~l-~d~~~L~~~~i~~~~~i~~~~~ 224 (230)
++-+ +..+||+++-.+|....+-.. .+.++|+...- +..+-=.++-++++|.|.++.+
T Consensus 28 pviL~~~GsTv~Dfa~~IH~di~~~f-kyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 28 PVVLPYSRTTVEDFCMKIHKNLIKEF-KYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 87 (93)
T ss_dssp CEEEETTSCCHHHHHHHHCTTCTTTE-EEEEEBSTTSSSSSEEECSSCCCCSSEEECEEEC
T ss_pred CEEEecCCCCHHHHHHHHHHHHHhhc-cEEEEecccccCCCEECCCCcEecCCCEEEEEeC
Confidence 3666 678999999999998864211 23455543221 2233335677889999988876
No 433
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=24.68 E-value=57 Score=26.68 Aligned_cols=55 Identities=9% Similarity=0.026 Sum_probs=39.6
Q ss_pred EEeccCe----eEeeecCCCChHHHHHHHHHhHhCCCCC-CcEEEEc----C--cccCCCcchhhh
Q 026957 81 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA----G--KQLEDGRTLADY 135 (230)
Q Consensus 81 v~~~~g~----~~~i~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~----g--~~L~d~~~L~~~ 135 (230)
|...+|. ...+.++..+|+.++-..|+++.|+... ..-|.+. + .-|+.+.++.+-
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~ 77 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNV 77 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhh
Confidence 4456766 8899999999999999999999998433 2455542 1 136677777653
No 434
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=24.57 E-value=1.7e+02 Score=21.88 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=40.6
Q ss_pred hccccCCceEEEEEeecceeEEEEeccCceeEEE-eeccchHHHHHHhhccccCCCCCceEEEEcC
Q 026957 135 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 199 (230)
Q Consensus 135 ~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~-v~~~~tv~~lK~~i~~~~~~~~~~~~l~~~g 199 (230)
.++..+..+++++.-.+.....++..+.+...+. .++..+..-+|+.+....+......+-...|
T Consensus 50 h~iR~Dv~v~lvL~g~p~pp~tI~f~g~~lr~l~~PDErs~a~lI~kAL~~~~~~~~~~~~~~~pG 115 (208)
T 2qwv_A 50 QSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVGMGKEQTRVVQPG 115 (208)
T ss_dssp SSBCSSEEEEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTTCCTTCEEEEETT
T ss_pred ccccCCeEEEEEEcCCCCCCeEEEEeCcccccCCCCchHHHHHHHHHHHHhccccccccccccCCC
Confidence 4677888888888776556666776555666677 6777888888998877554333333333444
No 435
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=24.37 E-value=1.5e+02 Score=19.16 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=36.8
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEE
Q 026957 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~ 121 (230)
.|.+..++++.-.++|.+..|+.+--.+.-+..++.++....+.
T Consensus 15 ~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~ 58 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYR 58 (96)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred EEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEE
Confidence 45566789988899999999999999999999999887666653
No 436
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=24.13 E-value=83 Score=22.00 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=26.7
Q ss_pred hhhCCCCCceEEEeccccccCCCc-cccccc--ccccceeeeee
Q 026957 32 DKEGIPPDQQRLIFAGKQLEDGRT-LADYNI--QKESTLHLVLR 72 (230)
Q Consensus 32 ~~~gi~~~~q~l~~~g~~l~d~~~-l~~~~i--~~~~~i~l~~~ 72 (230)
...|+.+.+..+.++|+.+.+... +...-+ ..++.+.+.++
T Consensus 41 ~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr 84 (166)
T 1w9e_A 41 SLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIR 84 (166)
T ss_dssp HHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEE
T ss_pred HHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEE
Confidence 356999999999999998876543 332222 14445555553
No 437
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=24.11 E-value=1.5e+02 Score=19.08 Aligned_cols=84 Identities=13% Similarity=0.121 Sum_probs=47.8
Q ss_pred cHHHHHHHhhhhhCCCCCceEEEeccccccCCCcccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChHHH
Q 026957 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDN 101 (230)
Q Consensus 22 tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV~~ 101 (230)
=..++-+.+.+..|.|.+.+.+.+.. +..+. ..++ ..+-.-+.|+...|++..- ...-...
T Consensus 18 l~~~l~~~l~~~l~kPe~~~~v~~~~-----~~~~~----~~g~-------~~~~~~i~i~~~~g~~~eq---k~~l~~~ 78 (113)
T 1hfo_A 18 FLSSTSALVGNILSKPGSYVAVHINT-----DQQLS----FGGS-------TNPAAFGTLMSIGGIEPSR---NRDHSAK 78 (113)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEEEEEC-----SCEEE----ETTB-------CSSCEEEEEEESSSCSHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHEEEEEeC-----CccEE----ecCC-------CCCeEEEEEEEecCCCHHH---HHHHHHH
Confidence 35677788888999999987776632 11111 1111 1222334444444332110 0124566
Q ss_pred HHHHHHhHhCCCCCCcEEEEcCc
Q 026957 102 VKAKIQDKEGIPPDQQRLIFAGK 124 (230)
Q Consensus 102 lK~~i~~~~~i~~~~q~L~~~g~ 124 (230)
+-+.+++..|+|+++..+.+...
T Consensus 79 i~~~l~~~lgi~~~~v~I~~~e~ 101 (113)
T 1hfo_A 79 LFDHLNTKLGIPKNRMYIHFVNL 101 (113)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEEC
T ss_pred HHHHHHHHhCcCcCeEEEEEEEC
Confidence 66777888999999988776543
No 438
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=24.06 E-value=10 Score=23.28 Aligned_cols=74 Identities=12% Similarity=0.270 Sum_probs=48.5
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcc-cccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChH
Q 026957 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
+....+++.+.+..|+++ ..+.++.++ .++|+.+=..+.+.......+.+.+... .+....||
T Consensus 5 ~i~~~l~~ii~~~l~~~~---------~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i~~~-------~~~~~~Tv 68 (81)
T 3gzm_A 5 STFDDIKKIISKQLSVEE---------DKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQ-------DALKINTV 68 (81)
T ss_dssp HHHHHHHHHHHHHHTCCG---------GGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHH-------HHHTCCBH
T ss_pred HHHHHHHHHHHHHhCcCH---------HHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCcCHH-------HHHHcCCH
Confidence 345678888888899886 346777788 6999877666666655543333333211 13345689
Q ss_pred HHHHHHHHhHh
Q 026957 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
+++-..|.++.
T Consensus 69 ~~l~~~i~~~~ 79 (81)
T 3gzm_A 69 QDAIDYIEKNN 79 (81)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99888887654
No 439
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=23.87 E-value=13 Score=22.94 Aligned_cols=74 Identities=14% Similarity=0.233 Sum_probs=46.9
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcc-cccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChH
Q 026957 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
+....+++.+.+..++++ ..+.++..| .++|+.+=..+.+.......+.+.+. .. .+....||
T Consensus 9 ~i~~~l~~~i~~~l~~~~---------~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~--~~-----~~~~~~Tv 72 (84)
T 2kwl_A 9 EIFSKVRSIISEQLDKKE---------DEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIP--EN-----EANEFETV 72 (84)
T ss_dssp HHHHHHHHHHHHHHCCCG---------GGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTT--TT-----GGGGCSSH
T ss_pred HHHHHHHHHHHHHhCCCc---------ccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCcC--HH-----HHHHCCCH
Confidence 345667888888888876 346777788 88888766666666554333333221 10 12334589
Q ss_pred HHHHHHHHhHh
Q 026957 100 DNVKAKIQDKE 110 (230)
Q Consensus 100 ~~lK~~i~~~~ 110 (230)
+++-+.|.++.
T Consensus 73 ~~l~~~i~~~~ 83 (84)
T 2kwl_A 73 GDVVNFIKKRK 83 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99988887654
No 440
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=23.79 E-value=60 Score=20.90 Aligned_cols=27 Identities=4% Similarity=0.161 Sum_probs=21.8
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHH
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~ 28 (230)
.|++...+|...++++.+++|+.+.=.
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlL~aa~ 28 (105)
T 1b9r_A 2 RVVFIDEQSGEYAVDAQDGQSLMEVAT 28 (105)
T ss_dssp EEEECCTTTSCEEEECCTTCCTTHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 567766788888999999999988654
No 441
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=23.54 E-value=1.5e+02 Score=19.96 Aligned_cols=26 Identities=4% Similarity=0.105 Sum_probs=20.3
Q ss_pred CcHHHHHHHhhhhh-CCCCCceEEEec
Q 026957 21 DTIDNVKAKIQDKE-GIPPDQQRLIFA 46 (230)
Q Consensus 21 ~tv~~lK~~i~~~~-gi~~~~q~l~~~ 46 (230)
.|..+|+++|++.+ ++....-.+.|.
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~Yk 83 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYR 83 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEE
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEE
Confidence 49999999999999 566555666664
No 442
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=22.94 E-value=1.2e+02 Score=18.36 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=20.2
Q ss_pred cchhhhccccCCceEEEEEeecceeEEEE
Q 026957 130 RTLADYNIQKESTLHLVLRLRGGMQIFVK 158 (230)
Q Consensus 130 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~ 158 (230)
..|.+.|+.+|+.|.+.-+.+.+=.+.++
T Consensus 26 ~rL~~lGl~pG~~v~V~~~~p~~gpi~v~ 54 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYIRKVAPLGDPIQIN 54 (81)
T ss_dssp HHHHHHTCCTTCEEEEEEECTTSCCEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 46889999999999887665433233444
No 443
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=22.63 E-value=90 Score=24.75 Aligned_cols=43 Identities=7% Similarity=0.162 Sum_probs=31.9
Q ss_pred CceeeEEEeccCeeEeeecCC--CChHHHHHHHHHhHhCCCCC---CcEEEE
Q 026957 75 GGMQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPD---QQRLIF 121 (230)
Q Consensus 75 ~~~~v~v~~~~g~~~~i~v~~--~~tV~~lK~~i~~~~~i~~~---~q~L~~ 121 (230)
+-+.+.|...+|....++++. ++|+.++- +..|++.. ..-|..
T Consensus 4 ~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~~~~~~FaL~~ 51 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQETQQYFTIWI 51 (322)
T ss_dssp -CCEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCTTGGGGEEEEE
T ss_pred CceEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCccccCeeEEEE
Confidence 346788888999999999999 89999994 34677643 345554
No 444
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=22.58 E-value=1.5e+02 Score=26.86 Aligned_cols=59 Identities=10% Similarity=0.225 Sum_probs=38.8
Q ss_pred eeEEEeeccchHHHHHHhhccccC--CCCCc--------eEEEEcCe--e------cCCCCcccccCCCCCCEEEEE
Q 026957 164 TITLEVESSDTIDNVKAKIQDKEG--IPPDQ--------QRLIFAGK--Q------LEDGRTLADYNIQKESTLHLV 222 (230)
Q Consensus 164 ~~~~~v~~~~tv~~lK~~i~~~~~--~~~~~--------~~l~~~g~--~------l~d~~~L~~~~i~~~~~i~~~ 222 (230)
...+.++.+.|+.++-+.++.+.. +.... ..++|... . -.-+++|.++|+.+|+.|.+.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 456778778899999888888643 32111 23444321 1 123578999999999998774
No 445
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=22.40 E-value=96 Score=19.54 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=21.0
Q ss_pred EEEEEcCCCcEEEEEecCCCcHHHHHHH
Q 026957 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
+|++...+|....+++.+++|+.+.=..
T Consensus 6 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 6 TITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred EEEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 3555544577889999999999987653
No 446
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=22.37 E-value=67 Score=26.21 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=28.5
Q ss_pred EEcCCCc----EEEEEecCCCcHHHHHHHhhhhhCCC
Q 026957 5 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIP 37 (230)
Q Consensus 5 v~~~~g~----~~~~~v~~~~tv~~lK~~i~~~~gi~ 37 (230)
|-..+|. ...+.+++..|+.+|-..|.++.||.
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~ 48 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVK 48 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCS
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 3344665 89999999999999999999999994
No 447
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=22.09 E-value=51 Score=20.40 Aligned_cols=26 Identities=8% Similarity=0.192 Sum_probs=18.9
Q ss_pred cCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 202 LEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 202 l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
+.|...|. +++.|+.|.+.+...+|+
T Consensus 45 v~~~~~l~--~lk~Gd~V~F~~~~~~~~ 70 (80)
T 2qcp_X 45 ITPQTKMS--EIKTGDKVAFNFVQQGNL 70 (80)
T ss_dssp CCTTCEEC--CCCTTCEEEEEEEEETTE
T ss_pred ccChhhhh--cCCCCCEEEEEEEEeCCE
Confidence 34444443 589999999999987774
No 448
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=21.94 E-value=18 Score=21.73 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=45.8
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcc-cccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChH
Q 026957 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
+....+++.+.+..|++++ .+.++..+ .++|+.+=..+.+.........+.+.. -.+....||
T Consensus 3 ~i~~~l~~~~~~~l~~~~~---------~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~-------~~l~~~~Tv 66 (78)
T 1l0i_A 3 TIEERVKKIIGEQLGVKQE---------EVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPD-------EEAEKMTTV 66 (78)
T ss_dssp CHHHHHHHHHHHHHTCCGG---------GCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCH-------HHHTTCCBH
T ss_pred HHHHHHHHHHHHHhCCCHH---------HCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCH-------HHHHHcCCH
Confidence 3456788888888998763 45667777 588887666666655443322222210 123345688
Q ss_pred HHHHHHHHhH
Q 026957 100 DNVKAKIQDK 109 (230)
Q Consensus 100 ~~lK~~i~~~ 109 (230)
+++-+.+.++
T Consensus 67 ~~l~~~i~~~ 76 (78)
T 1l0i_A 67 QAAIDYINGH 76 (78)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8888887765
No 449
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=21.79 E-value=1.3e+02 Score=19.80 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=42.1
Q ss_pred ccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEEEcC--cccCCCcchhhh
Q 026957 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLADY 135 (230)
Q Consensus 84 ~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g--~~L~d~~~L~~~ 135 (230)
+.++.+.+...++-++.++-+-|-.++++..+...+...| .+|+-..++...
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs~l 78 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVSSV 78 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGGGS
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchhhh
Confidence 6788899999999999999999999999998887776655 455656666554
No 450
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=21.68 E-value=13 Score=22.86 Aligned_cols=73 Identities=14% Similarity=0.278 Sum_probs=47.2
Q ss_pred CcHHHHHHHhhhhhCCCCCceEEEeccccccCCCcc-cccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCChH
Q 026957 21 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99 (230)
Q Consensus 21 ~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~d~~~l-~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~tV 99 (230)
+....+++.+.+..|+++ ..+.++..| .++|+.+=..+.+.......+.+.+... .+....||
T Consensus 7 ~i~~~l~~ii~~~l~~~~---------~~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~-------~~~~~~Tv 70 (82)
T 2qnw_A 7 PLLERVKDVVADQLGVDR---------ARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDE-------EASKIATV 70 (82)
T ss_dssp HHHHHHHHHHHHHHCCCG---------GGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHH-------HHTTCCBH
T ss_pred HHHHHHHHHHHHHHCCCH---------hhCCCccchhhccCCcHHHHHHHHHHHHHHHCCcCCHH-------HHHHcCCH
Confidence 345678888999999876 346777788 7899876666666655433333322111 13445689
Q ss_pred HHHHHHHHhH
Q 026957 100 DNVKAKIQDK 109 (230)
Q Consensus 100 ~~lK~~i~~~ 109 (230)
+++-..+.++
T Consensus 71 ~~l~~~i~~~ 80 (82)
T 2qnw_A 71 QDALSYIEKA 80 (82)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988887765
No 451
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=21.47 E-value=11 Score=23.10 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=47.6
Q ss_pred CCcHHHHHHHhhhhhCCCCCceEEEecccccc--CCCcccccccccccceeeeeeecCceeeEEEeccCeeEeeecCCCC
Q 026957 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSD 97 (230)
Q Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~l~~~g~~l~--d~~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~i~v~~~~ 97 (230)
..+...+++.+.+..|+++. ..+. ++..+.++|+.+=..+.+.......+.+.+... .+....
T Consensus 3 ~~~~~~l~~~l~~~l~~~~~--------~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~i~~~-------~~~~~~ 67 (83)
T 1or5_A 3 ALTVDDLKKLLAETAGEDDS--------VDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDE-------TVGRLG 67 (83)
T ss_dssp CSCHHHHHHHHHHHSCCCSS--------CCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHH-------HHHHCC
T ss_pred hHHHHHHHHHHHHHhCCCcc--------cccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCccCHH-------HHhccC
Confidence 35678899999999999874 1344 566689999876666666655543333333111 122345
Q ss_pred hHHHHHHHHHhH
Q 026957 98 TIDNVKAKIQDK 109 (230)
Q Consensus 98 tV~~lK~~i~~~ 109 (230)
||+++-..|.++
T Consensus 68 Tv~~l~~~i~~~ 79 (83)
T 1or5_A 68 TPRELLDEVNTT 79 (83)
T ss_dssp CSHHHHHHHTTC
T ss_pred CHHHHHHHHHHH
Confidence 888888777654
No 452
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=20.66 E-value=54 Score=19.53 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=16.8
Q ss_pred CcccccCCCCCCEEEEEEEec
Q 026957 206 RTLADYNIQKESTLHLVLRLR 226 (230)
Q Consensus 206 ~~L~~~~i~~~~~i~~~~~~~ 226 (230)
+.|.+.|+.+|+.|.+.-+..
T Consensus 25 ~rL~~lGl~~G~~v~v~~~~p 45 (75)
T 2h3j_A 25 QRLFSMGLLPGAALRVVRIAP 45 (75)
T ss_dssp HHHHHHTCCTTCEEEEEECCT
T ss_pred HHHHHcCCCCCCEEEEEEECC
Confidence 467888999999998887754
No 453
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=20.65 E-value=1.4e+02 Score=18.44 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=20.2
Q ss_pred cchhhhccccCCceEEEEEeecceeEEEE
Q 026957 130 RTLADYNIQKESTLHLVLRLRGGMQIFVK 158 (230)
Q Consensus 130 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~ 158 (230)
..|.+.|+.+|+.|.+.-+.+.+-.+.++
T Consensus 29 ~rL~~mGl~pG~~V~V~~~~p~~gpi~v~ 57 (86)
T 2k4y_A 29 RKIMDMGIVRGTEIYIEGKAPMGDPIALR 57 (86)
T ss_dssp HHHHHHTCCTTCEEEEEEECTTSCSEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEE
Confidence 46889999999999887665423233444
No 454
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=20.59 E-value=1.7e+02 Score=18.36 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=18.9
Q ss_pred EEEEcCCCcEEEEEecCCCcHHHHHHH
Q 026957 3 IFVKTLTGKTITLEVESSDTIDNVKAK 29 (230)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tv~~lK~~ 29 (230)
|++...+| ..++++.+++|+.+.=..
T Consensus 5 v~~~~~~~-~~~~~~~~g~tlL~a~~~ 30 (97)
T 1a70_A 5 VTLVTPTG-NVEFQCPDDVYILDAAEE 30 (97)
T ss_dssp EEEEETTE-EEEEEEETTSCHHHHHHH
T ss_pred EEEEeCCc-eEEEEeCCCCcHHHHHHH
Confidence 45544444 788999999999987653
No 455
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=20.48 E-value=1.9e+02 Score=19.02 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=36.6
Q ss_pred eeEEEeccCeeEeeecCCCChHHHHHHHHHhHhCCCCCCcEEE
Q 026957 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120 (230)
Q Consensus 78 ~v~v~~~~g~~~~i~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 120 (230)
.|.+..++++.-.++|.+..|+.+--.+.-+..++.++....+
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 3556678888889999999999999999999999988776665
No 456
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=20.47 E-value=57 Score=20.62 Aligned_cols=26 Identities=8% Similarity=0.192 Sum_probs=19.0
Q ss_pred cCCCCcccccCCCCCCEEEEEEEecCCC
Q 026957 202 LEDGRTLADYNIQKESTLHLVLRLRGGD 229 (230)
Q Consensus 202 l~d~~~L~~~~i~~~~~i~~~~~~~~g~ 229 (230)
+.|...|. +++.|+.|.+.+...+|+
T Consensus 53 v~~~~~l~--~lk~Gd~V~F~~~~~~~~ 78 (88)
T 2vb2_X 53 ITPQTKMS--EIKTGDKVAFNFVQQGNL 78 (88)
T ss_dssp CCTTCEEC--CCCTTCEEEEEEEEETTE
T ss_pred cCChhhhh--cCCCCCEEEEEEEEeCCE
Confidence 34444443 589999999999987774
No 457
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=20.39 E-value=86 Score=23.11 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=36.4
Q ss_pred EeecceeEEEEeccCceeEEEeeccchHHHHHHhhccccCCCCCceEEE
Q 026957 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196 (230)
Q Consensus 148 ~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~lK~~i~~~~~~~~~~~~l~ 196 (230)
|...+..+.|...++..+.+.=-..+-+..|++.+...+++++..-.+.
T Consensus 80 r~~rg~~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls 128 (191)
T 3f5r_A 80 RGCRGYDLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHS 128 (191)
T ss_dssp ECSSSEEEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSST
T ss_pred EccCCcEEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeeee
Confidence 4556788888887887777775566669999999999888776554443
Done!