BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026959
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 101/169 (59%), Positives = 131/169 (77%), Gaps = 3/169 (1%)
Query: 2 VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQ 61
V DNESGKS+ SE+RTS+G + +K +D +++ IE R+A T +P EN E +Q+LHY GQ
Sbjct: 59 VVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQ 118
Query: 62 KYEPHFDFFRDKMNQ--QLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECAR 119
KYEPH+D+F D +N + GG R+ T+LMYL+ VE+GGETV PN+E + DG WSECA+
Sbjct: 119 KYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDG-WSECAK 177
Query: 120 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 168
RG AVKP+KGDAL+F+SL PD S D SLHGSCP ++G+KWSATKWIHV
Sbjct: 178 RGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 101/169 (59%), Positives = 131/169 (77%), Gaps = 3/169 (1%)
Query: 2 VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQ 61
V DNESGKS+ SE+RTS+G + +K +D +++ IE R+A T +P EN E +Q+LHY GQ
Sbjct: 51 VVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQ 110
Query: 62 KYEPHFDFFRDKMNQ--QLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECAR 119
KYEPH+D+F D +N + GG R+ T+LMYL+ VE+GGETV PN+E + DG WSECA+
Sbjct: 111 KYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDG-WSECAK 169
Query: 120 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 168
RG AVKP+KGDAL+F+SL PD S D SLHGSCP ++G+KWSATKWIHV
Sbjct: 170 RGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 218
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 101/169 (59%), Positives = 131/169 (77%), Gaps = 3/169 (1%)
Query: 2 VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQ 61
V DNESGKS+ SE+RTS+G + +K +D +++ IE R+A T +P EN E +Q+LHY GQ
Sbjct: 50 VVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQ 109
Query: 62 KYEPHFDFFRDKMNQ--QLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECAR 119
KYEPH+D+F D +N + GG R+ T+LMYL+ VE+GGETV PN+E + DG WSECA+
Sbjct: 110 KYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDG-WSECAK 168
Query: 120 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 168
RG AVKP+KGDAL+F+SL PD S D SLHGSCP ++G+KWSATKWIHV
Sbjct: 169 RGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 217
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 217 bits (552), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 100/169 (59%), Positives = 128/169 (75%), Gaps = 3/169 (1%)
Query: 2 VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQ 61
V DNESGKS+ SE+RTS+G + +K +D +++ IE R+A T +P EN E +Q+LHY GQ
Sbjct: 59 VVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRVAQVTXIPLENHEGLQVLHYHDGQ 118
Query: 62 KYEPHFDFFRDKMNQ--QLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECAR 119
KYEPH+D+F D +N + GG R+ T L YL+ VE+GGETV PN+E + DG WSECA+
Sbjct: 119 KYEPHYDYFHDPVNAGPEHGGQRVVTXLXYLTTVEEGGETVLPNAEQKVTGDG-WSECAK 177
Query: 120 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 168
RG AVKP+KGDAL F+SL PD S D SLHGSCP ++G+KWSATKWIHV
Sbjct: 178 RGLAVKPIKGDALXFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 113 bits (283), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 19/155 (12%)
Query: 12 ASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR 71
+++RTSSG FL +E+ A IE RI++ +P +GE + IL+YE Q+Y+ H+D+F
Sbjct: 75 VNDIRTSSGAFLD--DNELTAKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYFA 132
Query: 72 DKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDA 131
+ ++ +RI+T++ YL+ VE+GGET FP +S V P KG A
Sbjct: 133 EH-SRSAANNRISTLVXYLNDVEEGGETFFPKLNLS----------------VHPRKGXA 175
Query: 132 LLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWI 166
+ F + D S + +LHG PV +GEKW AT+W+
Sbjct: 176 VYFEYFYQDQSLNELTLHGGAPVTKGEKWIATQWV 210
>pdb|1YCD|A Chain A, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
Serine Hydrolase Family
pdb|1YCD|B Chain B, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
Serine Hydrolase Family
Length = 243
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 21 MFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEH 59
+F+ A D+ V S+ ++ +L +NG ++L YEH
Sbjct: 176 IFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYEH 214
>pdb|3OAI|A Chain A, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
pdb|3OAI|B Chain B, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
Length = 507
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 41 WTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHR 82
W + P +A+ I HY GQ Y F++++ Q +G R
Sbjct: 423 WRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERI-QWVGDPR 463
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,380,907
Number of Sequences: 62578
Number of extensions: 231916
Number of successful extensions: 414
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 8
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)