BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026959
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1
PE=2 SV=2
Length = 534
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 91/179 (50%), Gaps = 22/179 (12%)
Query: 2 VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQ 61
V D E+GK ++ R S +LS +D +V+ I RI T L E +Q+ +Y G
Sbjct: 365 VHDPETGKLTTAQYRVSKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGG 424
Query: 62 KYEPHFDFFR----DKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSEC 117
+YEPHFDF R D + G+RIAT L Y+S V GG TVFP
Sbjct: 425 QYEPHFDFARKDEPDAFRELGTGNRIATWLFYMSDVSAGGATVFPEV------------- 471
Query: 118 ARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN--FDKP 174
G +V P KG A+ +++L D ++ H +CPV+ G KW + KW+H R F +P
Sbjct: 472 ---GASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRP 527
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1
SV=1
Length = 516
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 92/179 (51%), Gaps = 22/179 (12%)
Query: 2 VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQ 61
V D E+GK + R S +LS + +V+ I RI T L E +Q+ +Y G
Sbjct: 347 VHDPETGKLTTAHYRVSKSAWLSGYESPVVSRINTRIQDLTGLDVSTAEELQVANYGVGG 406
Query: 62 KYEPHFDFFR----DKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSEC 117
+YEPHFDF R D + G+RIAT L Y+S V GG TVFP EV
Sbjct: 407 QYEPHFDFGRKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFP--EV----------- 453
Query: 118 ARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR--NFDKP 174
G +V P KG A+ +++L P D ++ H +CPV+ G KW + KW+H R F +P
Sbjct: 454 ---GASVWPKKGTAVFWYNLFPSGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRP 509
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2
SV=1
Length = 534
Score = 104 bits (260), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 2 VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQ 61
V D ++G + R S +L + D +VA + R+ T L + E +Q+ +Y G
Sbjct: 367 VRDPKTGVLTVASYRVSKSSWLEEDDDPVVAKVNQRMQQITGLTVKTAELLQVANYGMGG 426
Query: 62 KYEPHFDFFRDKMNQQLG--GHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECAR 119
+YEPHFDF R + L G+R+AT L Y+S VE GG TVFP+
Sbjct: 427 QYEPHFDFSRRPFDSTLKSEGNRLATFLNYMSDVEAGGATVFPDF--------------- 471
Query: 120 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR 169
G A+ P KG A+ +++L D + H +CPV+ G KW + KW H R
Sbjct: 472 -GAAIWPKKGTAVFWYNLFRSGEGDYRTRHAACPVLVGCKWVSNKWFHER 520
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2
SV=2
Length = 534
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 22/165 (13%)
Query: 16 RTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR---- 71
R S +LS +D +V+ I RI T L E +Q+ +Y G +YEPHFDF R
Sbjct: 379 RISKSAWLSGYEDPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEP 438
Query: 72 DKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDA 131
D + G+RIAT L Y+S V GG TVFP G +V P KG A
Sbjct: 439 DAFRELGTGNRIATWLFYMSDVSAGGATVFPEV----------------GASVWPKKGTA 482
Query: 132 LLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN--FDKP 174
+ +++L D ++ H +CPV+ G KW + KW+H R F +P
Sbjct: 483 VFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRP 527
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2
SV=1
Length = 537
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 22/179 (12%)
Query: 2 VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQ 61
V D ++G + R S +L + D +VA + R+ T L + E +Q+ +Y G
Sbjct: 368 VRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGG 427
Query: 62 KYEPHFDFFR----DKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSEC 117
+YEPHFDF R D + G+R+AT L Y+S VE GG TVFP+
Sbjct: 428 QYEPHFDFSRSDDEDAFKRLGTGNRVATFLNYMSDVEAGGATVFPDL------------- 474
Query: 118 ARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN--FDKP 174
G A+ P KG A+ +++L D + H +CPV+ G KW + KW H R F +P
Sbjct: 475 ---GAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRP 530
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1
SV=1
Length = 535
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 22/179 (12%)
Query: 2 VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQ 61
V D ++G + R S +L + D +VA + R+ T L + E +Q+ +Y G
Sbjct: 366 VRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGVGG 425
Query: 62 KYEPHFDFF----RDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSEC 117
+YEPHFDF RD G+R+AT L Y+S VE GG TVFP+
Sbjct: 426 QYEPHFDFSRNDERDTFKHLGTGNRVATFLNYMSDVEAGGATVFPDL------------- 472
Query: 118 ARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN--FDKP 174
G A+ P KG A+ +++L D + H +CPV+ G KW + KW H R F +P
Sbjct: 473 ---GAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRP 528
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2
SV=1
Length = 534
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 22/165 (13%)
Query: 16 RTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR---- 71
R S +LS ++ +V+ I RI T L E +Q+ +Y G +YEPHFDF R
Sbjct: 379 RISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEP 438
Query: 72 DKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDA 131
D + G+RIAT L Y+S V GG TVFP G +V P KG A
Sbjct: 439 DAFKELGTGNRIATWLFYMSDVSAGGATVFPEV----------------GASVWPKKGTA 482
Query: 132 LLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN--FDKP 174
+ +++L D ++ H +CPV+ G KW + KW+H R F +P
Sbjct: 483 VFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRP 527
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1
SV=2
Length = 534
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 22/165 (13%)
Query: 16 RTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR---- 71
R S +LS ++ +V+ I RI T L E +Q+ +Y G +YEPHFDF R
Sbjct: 379 RISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEP 438
Query: 72 DKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDA 131
D + G+RIAT L Y+S V GG TVFP G +V P KG A
Sbjct: 439 DAFKELGTGNRIATWLFYMSDVSAGGATVFPEV----------------GASVWPKKGTA 482
Query: 132 LLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN--FDKP 174
+ +++L D ++ H +CPV+ G KW + KW+H R F +P
Sbjct: 483 VFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRP 527
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1
SV=1
Length = 534
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 22/165 (13%)
Query: 16 RTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFR---- 71
R S +LS ++ +V+ I RI T L E +Q+ +Y G +YEPHFDF R
Sbjct: 379 RISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEP 438
Query: 72 DKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDA 131
D + G+RIAT L Y+S V GG TVFP G +V P KG A
Sbjct: 439 DAFKELGTGNRIATWLFYMSDVLAGGATVFPEV----------------GASVWPKKGTA 482
Query: 132 LLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN--FDKP 174
+ +++L D ++ H +CPV+ G KW + KW+H R F +P
Sbjct: 483 VFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRP 527
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans
GN=phy-2 PE=1 SV=1
Length = 539
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 22/179 (12%)
Query: 2 VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQ 61
V ++++G+ + R S +L D ++ + RI +T L E +Q+ +Y G
Sbjct: 355 VQNSKTGELEHATYRISKSAWLKGDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGG 414
Query: 62 KYEPHFDFFRDKMNQQL----GGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSEC 117
Y+PHFDF R + G+RIATVL Y+S E+GG TVF +
Sbjct: 415 HYDPHFDFARKEEKNAFKTLNTGNRIATVLFYMSQPERGGATVFNHL------------- 461
Query: 118 ARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVR--NFDKP 174
G AV P K DAL +++L D D + H +CPV+ G KW + KWIH + F +P
Sbjct: 462 ---GTAVFPSKNDALFWYNLRRDGEGDLRTRHAACPVLLGVKWVSNKWIHEKGQEFTRP 517
>sp|Q75UG4|P4HA3_BOVIN Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2
SV=1
Length = 544
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 97/191 (50%), Gaps = 32/191 (16%)
Query: 1 MVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFL--PPENGEAMQILHYE 58
+VA E K + E R S +L D ++ +++ RIAA T L P E +Q+++Y
Sbjct: 375 VVASGE--KQLPVEYRISKSAWLKDTVDPVLVTLDHRIAALTGLDVQPPYAEYLQVVNYG 432
Query: 59 HGQKYEPHFDFFRD------KMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDG 112
G YEPHFD +MN G+R+AT ++YLS VE GG T F G
Sbjct: 433 IGGHYEPHFDHATSPSSPLYRMN---SGNRVATFMIYLSSVEAGGATAFIY--------G 481
Query: 113 NWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV--RN 170
N+S V +K AL +++LH D +LH +CPV+ G+KW A KWIH +
Sbjct: 482 NFS--------VPVVKNAALFWWNLHRSGEGDGDTLHAACPVLVGDKWVANKWIHEYGQE 533
Query: 171 FDKP-EKEPED 180
F +P PED
Sbjct: 534 FRRPCSSRPED 544
>sp|Q6W3E9|P4HA3_RAT Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3
PE=2 SV=1
Length = 544
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 96/188 (51%), Gaps = 26/188 (13%)
Query: 1 MVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFL--PPENGEAMQILHYE 58
+VA E K + E R S +L D ++ +++ RIAA T L P E +Q+++Y
Sbjct: 375 VVASGE--KQLQVEYRISKSAWLKDTVDPVLVTLDRRIAALTGLDIQPPYAEYLQVVNYG 432
Query: 59 HGQKYEPHFDFFRDK---MNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWS 115
G YEPHFD + + G+R AT+++YLS VE GG T F GN+S
Sbjct: 433 IGGHYEPHFDHATSPSSPLYKMKSGNRAATLMIYLSSVEAGGATAFIY--------GNFS 484
Query: 116 ECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV--RNFDK 173
V +K AL +++LH D +LH CPV+ G+KW A KWIH + F +
Sbjct: 485 --------VPVVKNAALFWWNLHRSGEGDDDTLHAGCPVLVGDKWVANKWIHEYGQEFRR 536
Query: 174 P-EKEPED 180
P + PED
Sbjct: 537 PCDTNPED 544
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans
GN=dpy-18 PE=1 SV=2
Length = 559
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 20/170 (11%)
Query: 2 VADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQ 61
V D+ +GK + + R S +L + + ++V ++ RI T L E E +QI +Y G
Sbjct: 358 VHDSVTGKLVTATYRISKSAWLKEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGG 417
Query: 62 KYEPHFDFFR---DKMNQQLG-GHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSEC 117
Y+PHFD + K + LG G+RIATVL Y+S GG TVF ++ +
Sbjct: 418 HYDPHFDHAKKEESKSFESLGTGNRIATVLFYMSQPSHGGGTVFTEAKST---------- 467
Query: 118 ARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIH 167
+ P K DAL +++L+ + + H +CPV+ G KW + KWIH
Sbjct: 468 ------ILPTKNDALFWYNLYKQGDGNPDTRHAACPVLVGIKWVSNKWIH 511
>sp|Q6W3F0|P4HA3_MOUSE Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2
SV=1
Length = 542
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 95/188 (50%), Gaps = 26/188 (13%)
Query: 1 MVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFL--PPENGEAMQILHYE 58
+VA E K + E R S +L D ++ +++ RIAA T L P E +Q+++Y
Sbjct: 373 VVASGE--KQLQVEYRISKSAWLKDTVDPMLVTLDHRIAALTGLDIQPPYAEYLQVVNYG 430
Query: 59 HGQKYEPHFDFFRDK---MNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWS 115
G YEPHFD + + G+R+AT ++YLS VE GG T F GN+S
Sbjct: 431 IGGHYEPHFDHATSPSSPLYRMKSGNRVATFMIYLSSVEAGGATAFIY--------GNFS 482
Query: 116 ECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV--RNFDK 173
V +K AL +++LH D +LH CPV+ G+KW A KWIH + F +
Sbjct: 483 --------VPVVKNAALFWWNLHRSGEGDGDTLHAGCPVLVGDKWVANKWIHEYGQEFRR 534
Query: 174 P-EKEPED 180
P PED
Sbjct: 535 PCSTNPED 542
>sp|Q7Z4N8|P4HA3_HUMAN Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapiens GN=P4HA3 PE=1
SV=1
Length = 544
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 93/188 (49%), Gaps = 26/188 (13%)
Query: 1 MVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLP--PENGEAMQILHYE 58
+VA E K + E R S +L D + ++ RIAA T L P E +Q+++Y
Sbjct: 375 VVASGE--KQLQVEYRISKSAWLKDTVDPKLVTLNHRIAALTGLDVRPPYAEYLQVVNYG 432
Query: 59 HGQKYEPHFDFFRDK---MNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWS 115
G YEPHFD + + G+R+AT ++YLS VE GG T F + +S
Sbjct: 433 IGGHYEPHFDHATSPSSPLYRMKSGNRVATFMIYLSSVEAGGATAFIYANLS-------- 484
Query: 116 ECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV--RNFDK 173
V ++ AL +++LH DS +LH CPV+ G+KW A KWIH + F +
Sbjct: 485 --------VPVVRNAALFWWNLHRSGEGDSDTLHAGCPVLVGDKWVANKWIHEYGQEFRR 536
Query: 174 P-EKEPED 180
P PED
Sbjct: 537 PCSSSPED 544
>sp|Q5UP57|P4H_MIMIV Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L593 PE=1 SV=1
Length = 242
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 73/164 (44%), Gaps = 23/164 (14%)
Query: 14 EVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDK 73
+R S M++SK + +V I I +P +N E +Q++ Y Q Y H D D
Sbjct: 95 NIRNSQQMWISK-NNPMVKPIFENICRQFNVPFDNAEDLQVVRYLPNQYYNEHHDSCCDS 153
Query: 74 MNQ-----QLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMK 128
Q + GG RI TVL+YL++ G T FPN KP
Sbjct: 154 SKQCSEFIERGGQRILTVLIYLNNEFSDGHTYFPN----------------LNQKFKPKT 197
Query: 129 GDALLFFSLHPDAST-DSTSLHGSCPVIEGEKWSATKWIHVRNF 171
GDAL+F+ L +++ SLH PV GEKW A W R F
Sbjct: 198 GDALVFYPLANNSNKCHPYSLHAGMPVTSGEKWIANLWFRERKF 241
>sp|Q9NXG6|P4HTM_HUMAN Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1
SV=2
Length = 502
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 36/198 (18%)
Query: 7 SGKSIASE-VRTSSGMFLSKAQ--DEIVASIEARIAAWTFLPPEN---GEAMQILHYEHG 60
S K+ +SE VR S +L + + I+ +I R+ T L PE E +Q++ Y G
Sbjct: 263 SHKAESSELVRNSHHTWLYQGEGAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEG 322
Query: 61 QKYEPHFD---FFRDKM--NQQLGGH---------RIATVLMYLSHVEKGGETVFPNS-- 104
Y H D + + + + +L + R TVL YL++V GGETVFP +
Sbjct: 323 GHYHAHVDSGPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADN 382
Query: 105 ----EVSQSRDG-----NWSECARRGYAVKPMKGDALLFFSLHPDAS-----TDSTSLHG 150
E+S +D C + VKP +G A+ +++ PD D SLHG
Sbjct: 383 RTYDEMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGDVDDYSLHG 442
Query: 151 SCPVIEGEKWSATKWIHV 168
C V G KW A WI+V
Sbjct: 443 GCLVTRGTKWIANNWINV 460
>sp|Q8BG58|P4HTM_MOUSE Transmembrane prolyl 4-hydroxylase OS=Mus musculus GN=P4htm PE=2
SV=1
Length = 503
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 35/189 (18%)
Query: 15 VRTSSGMFLSKAQ--DEIVASIEARIAAWTFLPPEN---GEAMQILHYEHGQKYEPHFD- 68
VR S +L + + ++ +I R+ T L PE E +Q++ Y G Y H D
Sbjct: 273 VRNSHHTWLHQGEGAHHVMRAIRQRVLRLTRLSPEIVEFSEPLQVVRYGEGGHYHAHVDS 332
Query: 69 --FFRDKM--NQQLGGH---------RIATVLMYLSHVEKGGETVFPNS------EVSQS 109
+ + + + +L + R TVL YL++V GGETVFP + E+S
Sbjct: 333 GPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLI 392
Query: 110 RDG-----NWSECARRGYAVKPMKGDALLFFSLHPDAS-----TDSTSLHGSCPVIEGEK 159
+D C + VKP +G A+ +++ PD D SLHG C V G K
Sbjct: 393 QDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGEVDDYSLHGGCLVTRGTK 452
Query: 160 WSATKWIHV 168
W A WI+V
Sbjct: 453 WIANNWINV 461
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 OS=Caenorhabditis elegans
GN=tyr-3 PE=3 SV=5
Length = 693
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 180 DDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKPSSVSS 230
+++C D NC +W+++GEC KNPL+M + CR SC+ C S ++
Sbjct: 513 NEECSDRHTNCAMWSRSGECNKNPLWMSEN------CRSSCQKCGRSRAAT 557
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 183 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKPSSV 228
C +ED C +WA+ G+C+ NP YM C+ SC VC+P+ V
Sbjct: 591 CYNEDQCCPIWAQRGQCRSNPGYMTCQ------CKVSCGVCRPNYV 630
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 183 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKPS 226
C +E+ C W+ GEC+KNP+YM +C+ SC+ C P+
Sbjct: 472 CFNENECCGPWSAKGECQKNPVYM------NVWCKASCRQCTPN 509
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 183 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVC 223
C D +C WA+ GEC KN K CR+SC C
Sbjct: 634 CADYHYDCAAWARRGECLKN-------KWMPENCRRSCNTC 667
>sp|P34269|TYR1_CAEEL Putative tyrosinase-like protein tyr-1 OS=Caenorhabditis elegans
GN=tyr-1 PE=3 SV=2
Length = 601
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 173 KPEKEPEDDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCK 224
+P P+ + C +ED C W++ EC+ N +YM YCRKSC +C+
Sbjct: 471 RPATTPQSN-CYNEDPCCNQWSRQNECRTNTVYM------NRYCRKSCGLCQ 515
>sp|Q0AP20|Y1675_MARMM PKHD-type hydroxylase Mmar10_1675 OS=Maricaulis maris (strain
MCS10) GN=Mmar10_1675 PE=3 SV=1
Length = 219
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 84/209 (40%), Gaps = 43/209 (20%)
Query: 5 NESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYE 64
+ +++ + + +G + + E+ ++ A +F P+ + + Y G Y
Sbjct: 34 GQVARAVKANEQLEAGARVDTVRSEVRKALMAHAGFVSFARPKTLSRILVSRYRDGMAYG 93
Query: 65 PHFDFFRDKMNQQLGGHRI-ATVLMYLSHVEK--GGETVF--PNSEVSQSRDGNWSECAR 119
PH D + +GG R + ++LS + GGE V P+ E
Sbjct: 94 PHID------DALMGGRRADLSFTLFLSDPDSYDGGELVMDGPDGETE------------ 135
Query: 120 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIH--VRNFDKPEKE 177
+K GDA+++ ++++H PV GE+ + W+ VR D+ E
Sbjct: 136 ----IKLAAGDAVVYA---------TSAIHQVAPVTRGERVAVVGWVRSLVRRPDQREIL 182
Query: 178 PEDDDCVDEDLNCVVWAKAGECKKNPLYM 206
+ D + ++A+ G+ ++ L +
Sbjct: 183 FDLDQV-----SAALFARDGKTRELDLVL 206
>sp|B1JJF1|MUTS_YERPY DNA mismatch repair protein MutS OS=Yersinia pseudotuberculosis
serotype O:3 (strain YPIII) GN=mutS PE=3 SV=1
Length = 851
Score = 35.4 bits (80), Expect = 0.36, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 18 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 75
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 76 QQL 78
QQL
Sbjct: 211 QQL 213
>sp|Q66EB5|MUTS_YERPS DNA mismatch repair protein MutS OS=Yersinia pseudotuberculosis
serotype I (strain IP32953) GN=mutS PE=3 SV=1
Length = 851
Score = 35.4 bits (80), Expect = 0.36, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 18 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 75
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 76 QQL 78
QQL
Sbjct: 211 QQL 213
>sp|A4TQ04|MUTS_YERPP DNA mismatch repair protein MutS OS=Yersinia pestis (strain
Pestoides F) GN=mutS PE=3 SV=1
Length = 851
Score = 35.4 bits (80), Expect = 0.36, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 18 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 75
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 76 QQL 78
QQL
Sbjct: 211 QQL 213
>sp|Q1CLQ9|MUTS_YERPN DNA mismatch repair protein MutS OS=Yersinia pestis bv. Antiqua
(strain Nepal516) GN=mutS PE=3 SV=1
Length = 851
Score = 35.4 bits (80), Expect = 0.36, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 18 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 75
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 76 QQL 78
QQL
Sbjct: 211 QQL 213
>sp|A9R111|MUTS_YERPG DNA mismatch repair protein MutS OS=Yersinia pestis bv. Antiqua
(strain Angola) GN=mutS PE=3 SV=1
Length = 851
Score = 35.4 bits (80), Expect = 0.36, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 18 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 75
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 76 QQL 78
QQL
Sbjct: 211 QQL 213
>sp|Q8ZBQ3|MUTS_YERPE DNA mismatch repair protein MutS OS=Yersinia pestis GN=mutS PE=3
SV=1
Length = 851
Score = 35.4 bits (80), Expect = 0.36, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 18 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 75
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 76 QQL 78
QQL
Sbjct: 211 QQL 213
>sp|B2K584|MUTS_YERPB DNA mismatch repair protein MutS OS=Yersinia pseudotuberculosis
serotype IB (strain PB1/+) GN=mutS PE=3 SV=1
Length = 851
Score = 35.4 bits (80), Expect = 0.36, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 18 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 75
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 76 QQL 78
QQL
Sbjct: 211 QQL 213
>sp|Q1C471|MUTS_YERPA DNA mismatch repair protein MutS OS=Yersinia pestis bv. Antiqua
(strain Antiqua) GN=mutS PE=3 SV=1
Length = 854
Score = 35.4 bits (80), Expect = 0.36, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 18 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 75
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 76 QQL 78
QQL
Sbjct: 211 QQL 213
>sp|A7FLX1|MUTS_YERP3 DNA mismatch repair protein MutS OS=Yersinia pseudotuberculosis
serotype O:1b (strain IP 31758) GN=mutS PE=3 SV=1
Length = 851
Score = 35.4 bits (80), Expect = 0.36, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 18 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 75
SSG F A E +A+ R L PEN E M ++ + HG + P ++F D
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEPMSLIEHRHGLRRRPLWEFELDTAK 210
Query: 76 QQL 78
QQL
Sbjct: 211 QQL 213
>sp|Q6D8C1|MUTS_ERWCT DNA mismatch repair protein MutS OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=mutS
PE=3 SV=1
Length = 854
Score = 34.3 bits (77), Expect = 0.81, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 18 SSGMF-LSKAQD-EIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 75
SSG F +S+ D E +A+ R L PE+ E+M+++ HG + P ++F D
Sbjct: 153 SSGRFRVSEPADRETMAAELQRTNPAELLYPESFESMELIDNRHGLRRRPMWEFEPDTAR 212
Query: 76 QQL 78
QQL
Sbjct: 213 QQL 215
>sp|A1JJU1|MUTS_YERE8 DNA mismatch repair protein MutS OS=Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081) GN=mutS PE=3
SV=1
Length = 851
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 18 SSGMF--LSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN 75
SSG F A E +A+ R L PEN E M ++ + HG + P ++F +
Sbjct: 151 SSGRFRVAEPADLETMAAELQRTNPAELLYPENFEQMSLIEHRHGLRRRPLWEFELETAK 210
Query: 76 QQL 78
QQL
Sbjct: 211 QQL 213
>sp|Q19269|NAS14_CAEEL Zinc metalloproteinase nas-14 OS=Caenorhabditis elegans GN=nas-14
PE=2 SV=2
Length = 503
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 183 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCK 224
C D + +C +W + G C+ + YM YCRK+C +C+
Sbjct: 380 CEDLNAHCGMWEQLGHCQHSVKYMA------HYCRKACNLCE 415
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 183 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVC 223
C D++L C WAK GEC +M + +C+ SC C
Sbjct: 469 CEDKNLFCSYWAKIGECNSESKFM------KIFCKASCGKC 503
>sp|A5FZW5|RL3_ACICJ 50S ribosomal protein L3 OS=Acidiphilium cryptum (strain JF-5)
GN=rplC PE=3 SV=1
Length = 227
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 41 WTFLPPENGEAMQILHYE---HGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGG 97
W F E + I H G + +P F KM LGG RI T+ + ++ +++
Sbjct: 129 WNFRGLEASHGVSISHRSLGSTGNRQDPGKTFKNKKMAGHLGGERITTLNLEVAAIDEAR 188
Query: 98 ETVFPNSEVSQSRDG 112
+ V ++DG
Sbjct: 189 NLIMIKGAVPGAKDG 203
>sp|Q09662|YS51_CAEEL Uncharacterized protein ZK673.1 OS=Caenorhabditis elegans
GN=ZK673.1 PE=2 SV=2
Length = 154
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 183 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCKPS 226
CVD NC W K G C Y +K + YC K+CK+C +
Sbjct: 113 CVDSSTNCANWEKNGFCSST-FYDCANK--KQYCAKTCKLCTTT 153
>sp|Q04648|CCBS_OENBE Probable cytochrome c biosynthesis protein OS=Oenothera berteriana
PE=2 SV=3
Length = 577
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 117 CARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKPEK 176
C+RR + G AL + L+P+ L PV+ GE +H+ DK
Sbjct: 160 CSRRN---RTFDGPALFYAPLYPERKMSFAFLGARLPVVRGEGKRTYLLLHLARDDKERA 216
Query: 177 EPEDDDCVDEDL 188
D+ +D L
Sbjct: 217 SSIDEQRIDGAL 228
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,943,141
Number of Sequences: 539616
Number of extensions: 3926403
Number of successful extensions: 8029
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 7954
Number of HSP's gapped (non-prelim): 42
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)