Query 026959
Match_columns 230
No_of_seqs 263 out of 1403
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:01:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 1.5E-70 3.3E-75 490.3 20.3 224 1-224 83-309 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 5.7E-44 1.2E-48 316.0 13.6 156 3-172 129-288 (289)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 4.6E-31 9.9E-36 218.2 14.5 135 11-167 40-178 (178)
4 PRK05467 Fe(II)-dependent oxyg 99.9 5.2E-22 1.1E-26 170.7 11.7 129 12-167 37-177 (226)
5 PHA02869 C4L/C10L-like gene fa 99.7 2.2E-16 4.8E-21 143.5 11.2 129 3-164 51-187 (418)
6 PHA02813 hypothetical protein; 99.6 8.5E-16 1.8E-20 138.0 10.7 130 4-164 43-178 (354)
7 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.6 5.1E-16 1.1E-20 116.4 6.7 91 52-167 1-100 (100)
8 COG3128 PiuC Uncharacterized i 99.2 7.3E-11 1.6E-15 97.9 8.9 96 48-167 80-180 (229)
9 smart00254 ShKT ShK toxin doma 99.1 3.5E-11 7.6E-16 73.2 1.1 33 183-223 1-33 (33)
10 PF01549 ShK: ShK domain-like; 98.8 1.2E-09 2.7E-14 67.9 -0.1 36 182-223 1-38 (38)
11 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.6 7.5E-08 1.6E-12 68.2 4.6 52 49-104 10-65 (70)
12 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.5 1.1E-07 2.3E-12 70.8 4.4 90 50-167 2-97 (98)
13 PF03336 Pox_C4_C10: Poxvirus 98.4 1.8E-06 4E-11 77.8 8.9 124 12-163 37-164 (339)
14 KOG3710 EGL-Nine (EGLN) protei 98.3 5.8E-06 1.3E-10 71.0 10.0 126 13-167 97-238 (280)
15 COG3751 EGL-9 Predicted prolin 98.0 4E-05 8.6E-10 67.1 8.5 101 51-170 137-242 (252)
16 PF09859 Oxygenase-NA: Oxygena 97.8 6.6E-05 1.4E-09 61.5 7.3 101 51-168 63-172 (173)
17 PHA02866 Hypothetical protein; 97.7 0.00013 2.8E-09 64.9 7.2 105 28-164 58-165 (333)
18 PF13759 2OG-FeII_Oxy_5: Putat 97.2 0.00093 2E-08 50.2 5.7 88 55-162 5-98 (101)
19 TIGR02408 ectoine_ThpD ectoine 96.9 0.0048 1E-07 54.7 8.4 122 33-163 94-244 (277)
20 KOG3844 Predicted component of 96.9 0.0052 1.1E-07 56.9 8.4 112 36-171 103-220 (476)
21 TIGR02466 conserved hypothetic 96.8 0.023 5E-07 48.4 11.1 91 52-162 98-194 (201)
22 PF12851 Tet_JBP: Oxygenase do 96.4 0.014 3.1E-07 48.3 7.5 79 62-167 86-170 (171)
23 PF05721 PhyH: Phytanoyl-CoA d 95.5 0.043 9.3E-07 44.6 6.5 113 33-157 70-206 (211)
24 PHA02923 hypothetical protein; 94.9 0.26 5.6E-06 44.3 9.6 101 28-168 43-145 (315)
25 TIGR01762 chlorin-enz chlorina 94.5 0.66 1.4E-05 41.5 11.5 118 32-158 74-236 (288)
26 COG3826 Uncharacterized protei 94.3 0.25 5.4E-06 41.6 7.7 101 51-168 125-234 (236)
27 KOG3371 Uncharacterized conser 91.3 0.07 1.5E-06 46.6 0.4 39 180-225 24-64 (243)
28 PRK15401 alpha-ketoglutarate-d 89.6 4.7 0.0001 34.7 10.2 101 30-157 96-196 (213)
29 PHA02985 hypothetical protein; 87.7 3.2 6.9E-05 36.7 8.0 107 28-171 39-145 (271)
30 PLN02485 oxidoreductase 85.9 4.1 8.9E-05 36.9 8.1 110 30-168 155-287 (329)
31 PF06822 DUF1235: Protein of u 85.7 6.3 0.00014 35.0 8.7 108 28-171 32-140 (266)
32 PF13532 2OG-FeII_Oxy_2: 2OG-F 85.0 2.5 5.5E-05 34.6 5.8 102 29-157 75-177 (194)
33 PLN03001 oxidoreductase, 2OG-F 84.9 4.1 8.8E-05 35.9 7.4 106 31-167 89-212 (262)
34 PLN02984 oxidoreductase, 2OG-F 83.2 13 0.00027 34.1 10.1 107 30-167 170-297 (341)
35 TIGR00568 alkb DNA alkylation 82.5 11 0.00025 31.0 8.6 41 29-69 74-114 (169)
36 COG5285 Protein involved in bi 82.3 6.4 0.00014 35.4 7.5 96 63-171 133-233 (299)
37 COG4340 Uncharacterized protei 80.6 5.8 0.00013 33.6 6.2 52 86-156 148-201 (226)
38 PLN02299 1-aminocyclopropane-1 79.7 9.3 0.0002 34.6 7.8 109 30-168 127-256 (321)
39 PLN02365 2-oxoglutarate-depend 79.2 12 0.00027 33.4 8.4 109 31-167 125-248 (300)
40 PLN02639 oxidoreductase, 2OG-F 78.9 22 0.00048 32.3 10.1 106 31-168 163-288 (337)
41 PLN00417 oxidoreductase, 2OG-F 77.3 20 0.00043 32.8 9.3 107 31-168 175-301 (348)
42 COG3145 AlkB Alkylated DNA rep 77.1 9.9 0.00021 32.2 6.7 100 15-135 71-170 (194)
43 PLN02904 oxidoreductase 77.1 25 0.00054 32.3 10.0 105 31-167 181-304 (357)
44 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 75.2 5.9 0.00013 33.4 4.9 99 28-156 70-179 (195)
45 PLN02912 oxidoreductase, 2OG-F 75.0 26 0.00057 32.0 9.5 105 31-168 170-294 (348)
46 PLN02758 oxidoreductase, 2OG-F 74.7 29 0.00062 32.0 9.7 108 31-167 184-309 (361)
47 PLN02750 oxidoreductase, 2OG-F 72.2 35 0.00076 31.1 9.6 107 31-168 166-292 (345)
48 PLN02216 protein SRG1 71.9 35 0.00076 31.4 9.5 105 31-167 182-307 (357)
49 PLN02515 naringenin,2-oxogluta 70.3 31 0.00066 31.8 8.8 87 51-168 196-294 (358)
50 PLN02393 leucoanthocyanidin di 68.7 27 0.00059 32.1 8.1 86 51-168 214-311 (362)
51 PLN02704 flavonol synthase 67.8 19 0.00042 32.7 6.9 106 31-168 170-296 (335)
52 PLN02403 aminocyclopropanecarb 67.8 28 0.0006 31.3 7.8 46 121-168 201-252 (303)
53 PLN02947 oxidoreductase 67.0 55 0.0012 30.4 9.7 104 31-167 195-321 (374)
54 PLN02997 flavonol synthase 66.7 31 0.00068 31.3 8.0 87 51-168 184-280 (325)
55 PLN02276 gibberellin 20-oxidas 65.5 79 0.0017 29.1 10.5 87 50-167 206-302 (361)
56 COG3491 PcbC Isopenicillin N s 61.0 40 0.00087 30.8 7.3 107 30-166 146-270 (322)
57 PF02668 TauD: Taurine catabol 58.8 10 0.00022 32.1 3.1 39 119-165 218-258 (258)
58 PTZ00273 oxidase reductase; Pr 58.5 29 0.00062 31.2 6.2 107 31-168 150-275 (320)
59 PLN02254 gibberellin 3-beta-di 57.6 56 0.0012 30.1 8.0 87 51-167 211-307 (358)
60 PLN03178 leucoanthocyanidin di 55.9 46 0.001 30.6 7.2 85 51-168 212-308 (360)
61 PLN03002 oxidoreductase, 2OG-F 53.9 47 0.001 30.1 6.8 110 31-167 153-283 (332)
62 cd00250 CAS_like Clavaminic ac 53.2 23 0.00049 30.6 4.5 40 120-167 218-260 (262)
63 PLN02156 gibberellin 2-beta-di 53.1 1.8E+02 0.0039 26.5 10.7 87 51-167 179-277 (335)
64 KOG4176 Uncharacterized conser 50.1 1.8E+02 0.0038 26.7 9.8 120 28-174 189-310 (323)
65 KOG4459 Membrane-associated pr 47.7 3.6 7.8E-05 39.1 -1.5 72 79-170 363-436 (471)
66 KOG1971 Lysyl hydroxylase [Pos 42.3 23 0.0005 33.4 2.9 77 79-169 279-357 (415)
67 PF08686 PLAC: PLAC (protease 41.6 17 0.00037 22.0 1.3 32 182-221 1-33 (34)
68 PF08562 Crisp: Crisp; InterP 40.0 13 0.00028 25.1 0.6 30 184-221 20-49 (55)
69 TIGR02409 carnitine_bodg gamma 38.2 94 0.002 28.4 6.3 37 62-104 186-222 (366)
70 PF10851 DUF2652: Protein of u 36.6 34 0.00074 26.6 2.5 21 120-140 13-33 (116)
71 PRK09553 tauD taurine dioxygen 33.2 30 0.00065 30.4 2.1 34 64-103 95-128 (277)
72 PF07350 DUF1479: Protein of u 32.4 26 0.00056 33.2 1.5 40 122-170 319-359 (416)
73 cd00250 CAS_like Clavaminic ac 32.0 88 0.0019 26.9 4.8 37 61-103 94-130 (262)
74 KOG0143 Iron/ascorbate family 29.1 2.5E+02 0.0053 25.5 7.3 85 51-166 177-273 (322)
75 PF13621 Cupin_8: Cupin-like d 28.7 1.3E+02 0.0028 25.0 5.2 41 120-169 207-248 (251)
76 TIGR02410 carnitine_TMLD trime 26.5 92 0.002 28.5 4.1 38 120-166 311-348 (362)
77 PF04194 PDCD2_C: Programmed c 25.0 83 0.0018 25.6 3.2 30 27-65 56-85 (164)
78 PF06415 iPGM_N: BPG-independe 23.6 46 0.00099 28.8 1.4 15 127-141 167-181 (223)
79 PF00642 zf-CCCH: Zinc finger 22.4 67 0.0014 17.9 1.5 16 187-202 3-18 (27)
80 TIGR02409 carnitine_bodg gamma 22.3 1.3E+02 0.0028 27.6 4.2 39 120-166 312-352 (366)
81 cd03528 Rieske_RO_ferredoxin R 21.9 1.3E+02 0.0028 21.4 3.5 49 87-158 4-52 (98)
82 PTZ00413 lipoate synthase; Pro 21.8 35 0.00075 32.1 0.4 22 202-227 149-170 (398)
83 PRK09965 3-phenylpropionate di 21.7 1.6E+02 0.0034 21.7 3.9 49 85-157 4-52 (106)
84 PF11403 Yeast_MT: Yeast metal 21.6 40 0.00086 20.5 0.5 8 214-221 18-25 (40)
85 COG2850 Uncharacterized conser 21.5 1.4E+02 0.003 28.0 4.1 40 29-72 101-141 (383)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=1.5e-70 Score=490.35 Aligned_cols=224 Identities=67% Similarity=1.189 Sum_probs=205.7
Q ss_pred CcccCCCCceeecCeEecceeeeCCCCcHHHHHHHHHHHHhcCCCCCCCCcceEEecCCCCCccccccCCCccccccCCC
Q 026959 1 MVADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGG 80 (230)
Q Consensus 1 ~vv~~~~g~~~~~~~RtS~~~~l~~~~~~v~~~i~~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~ 80 (230)
+|+++.+|+++.+++|||+++||+..+++++++|++||++++++|.++.|+|||+||++||+|.+|+|++.+..+...++
T Consensus 83 ~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg 162 (310)
T PLN00052 83 MVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGG 162 (310)
T ss_pred eeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCC
Confidence 47788888888899999999999988899999999999999999999999999999999999999999997644445689
Q ss_pred ceeEEEEEeccCCCCCcceeccCCcc--cccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccc
Q 026959 81 HRIATVLMYLSHVEKGGETVFPNSEV--SQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGE 158 (230)
Q Consensus 81 ~R~~T~liYLnd~~~GGeT~Fp~~~~--~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~ 158 (230)
+|++||||||||+++||||+||.++. .++.+..|++|++.+++|+|+||+||||+|+++||+.|++++|++|||++|+
T Consensus 163 ~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~ 242 (310)
T PLN00052 163 HRYATVLMYLSTVDKGGETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGE 242 (310)
T ss_pred ceeEEEEEEeccCCCCCceecCCcccccccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCe
Confidence 99999999999999999999999753 3455678999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeEEeccCCCCCCC-CCCCccccCCcChHhHHhcCCCCCCccccccccCCCchhhhhcCcCC
Q 026959 159 KWSATKWIHVRNFDKPEKE-PEDDDCVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVCK 224 (230)
Q Consensus 159 K~~~~~Wi~~~~~~~~~~~-~~~~~C~d~~~~C~~Wa~~geC~~np~~M~~~~~~~~~C~~sC~~C~ 224 (230)
||++|+|||..++..+-.. .++..|.|.++.|+.||+.|||++||.||+|+++..++|+|||+.|.
T Consensus 243 Kw~atkWi~~~~~~~~~~~~~~~~~C~d~~~~C~~Wa~~GeC~~Np~yM~g~~~~~~~C~~SC~~C~ 309 (310)
T PLN00052 243 KWSAPKWIHIRSYEHPPVVPKDTEGCADKSAHCAEWAAAGECEKNPVYMVGAEGAPGNCRKSCGVCD 309 (310)
T ss_pred EEEEEEeeecccccCCCcCCccCCCCcCCcccChhHhhCCccccChHhhcCCCCCCChhhccccccC
Confidence 9999999999998754221 24678999999999999999999999999999999999999999997
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-44 Score=315.97 Aligned_cols=156 Identities=58% Similarity=0.961 Sum_probs=141.9
Q ss_pred ccCCCCceeecCeEecceeeeCCCCcHHHHHHHHHHHHhcCCCCCCCCcceEEecCCCCCccccccCCCc--c--ccccC
Q 026959 3 ADNESGKSIASEVRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRD--K--MNQQL 78 (230)
Q Consensus 3 v~~~~g~~~~~~~RtS~~~~l~~~~~~v~~~i~~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~H~D~~~~--~--~~~~~ 78 (230)
.|..+|.+..+.+|+|+++||..+.++++++|++||++++++|.++.|+|||++|+.||+|.+|+|++.+ + .....
T Consensus 129 ~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~ 208 (289)
T KOG1591|consen 129 ADKGTGHSTTSAVRTSSGTFLPDGASPVVSRIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLN 208 (289)
T ss_pred ccCCcccccceeeEecceeEecCCCCHHHHHHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhhcc
Confidence 5666677777889999999999988999999999999999999999999999999999999999999953 1 12356
Q ss_pred CCceeEEEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccc
Q 026959 79 GGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGE 158 (230)
Q Consensus 79 ~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~ 158 (230)
+++|++|+|+||+|+++||+|+||.+.. .++|+|+||+||||||+++||..|+++.|++|||+.|.
T Consensus 209 ~g~RiaT~l~yls~v~~GG~TvFP~~~~--------------~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~ 274 (289)
T KOG1591|consen 209 GGNRIATVLMYLSDVEQGGETVFPNLGM--------------KPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGS 274 (289)
T ss_pred cCCcceeEEEEecccCCCCcccCCCCCC--------------cccccCCCCCeeEEEEccCCCCCCccccccCCCeeecc
Confidence 8999999999999999999999999731 24999999999999999999999999999999999999
Q ss_pred eEEEEEeEEeccCC
Q 026959 159 KWSATKWIHVRNFD 172 (230)
Q Consensus 159 K~~~~~Wi~~~~~~ 172 (230)
||++|+|||+..+.
T Consensus 275 kw~~~~wi~~~~~~ 288 (289)
T KOG1591|consen 275 KWIATKWIHEKNQE 288 (289)
T ss_pred ceeeeeeeeecccc
Confidence 99999999998664
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.97 E-value=4.6e-31 Score=218.20 Aligned_cols=135 Identities=43% Similarity=0.721 Sum_probs=119.6
Q ss_pred eecCeEecceeeeCCCC-cHHHHHHHHHHHHhcCCC---CCCCCcceEEecCCCCCccccccCCCccccccCCCceeEEE
Q 026959 11 IASEVRTSSGMFLSKAQ-DEIVASIEARIAAWTFLP---PENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATV 86 (230)
Q Consensus 11 ~~~~~RtS~~~~l~~~~-~~v~~~i~~Ri~~~~~l~---~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~ 86 (230)
..+++|+|.++|+...+ ++++++|.+||+++++++ ....|.+||++|++|++|.+|+|...... .++|.+|+
T Consensus 40 ~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~----~~~r~~T~ 115 (178)
T smart00702 40 HDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRGLPLSAEDAQVARYGPGGHYGPHVDNFEDDE----NGDRIATF 115 (178)
T ss_pred ccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCchhhccCcceEEEEECCCCcccCcCCCCCCCC----CCCeEEEE
Confidence 56789999999999865 899999999999999998 78899999999999999999999986532 26899999
Q ss_pred EEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccceEEEEEeE
Q 026959 87 LMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWI 166 (230)
Q Consensus 87 liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi 166 (230)
++|||++++||+|.||.... .....|+|++|++|||++.. +.++|+++||.+|+||++++|+
T Consensus 116 ~~yLn~~~~GG~~~f~~~~~------------~~~~~v~P~~G~~v~f~~~~------~~~~H~v~pv~~G~r~~~~~W~ 177 (178)
T smart00702 116 LLYLNDVEEGGELVFPGLGL------------MVCATVKPKKGDLLFFPSGR------GRSLHGVCPVTRGSRWAITGWI 177 (178)
T ss_pred EEEeccCCcCceEEecCCCC------------ccceEEeCCCCcEEEEeCCC------CCccccCCcceeCCEEEEEEEE
Confidence 99999999999999998631 12469999999999999743 3799999999999999999999
Q ss_pred E
Q 026959 167 H 167 (230)
Q Consensus 167 ~ 167 (230)
|
T Consensus 178 ~ 178 (178)
T smart00702 178 R 178 (178)
T ss_pred C
Confidence 5
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.87 E-value=5.2e-22 Score=170.67 Aligned_cols=129 Identities=25% Similarity=0.318 Sum_probs=99.8
Q ss_pred ecCeEecceeeeCCCCcHHHHHHHHHHHHhc---------CCCCCCCCcceEEecCCCCCccccccCCCcccc-ccCCCc
Q 026959 12 ASEVRTSSGMFLSKAQDEIVASIEARIAAWT---------FLPPENGEAMQILHYEHGQKYEPHFDFFRDKMN-QQLGGH 81 (230)
Q Consensus 12 ~~~~RtS~~~~l~~~~~~v~~~i~~Ri~~~~---------~l~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~-~~~~~~ 81 (230)
.+++|..... + .++++++.|.++|...+ .+|.. ..++++.||.+|++|++|+|....... .....+
T Consensus 37 ~~~vKnN~ql--~-~d~~~a~~l~~~i~~~L~~~~l~~sa~lp~~-i~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~r 112 (226)
T PRK05467 37 AAQVKNNQQL--P-EDSPLARELGNLILDALTRNPLFFSAALPRK-IHPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVR 112 (226)
T ss_pred chhccccccc--C-CCCHHHHHHHHHHHHHHhcCchhhhhccccc-cccceEEEECCCCccCccccCCcccCCCCCccee
Confidence 4567776544 3 24678888888887654 23333 357899999999999999999865321 111235
Q ss_pred eeEEEEEeccCCC--CCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccce
Q 026959 82 RIATVLMYLSHVE--KGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEK 159 (230)
Q Consensus 82 R~~T~liYLnd~~--~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~K 159 (230)
|.+|++|||||++ +||||+|+... ....|+|++|++|+|++ .++|+++||++|+|
T Consensus 113 s~lS~~lyLnd~~~yeGGEl~~~~~~--------------g~~~Vkp~aG~~vlfps---------~~lH~v~pVt~G~R 169 (226)
T PRK05467 113 TDLSATLFLSDPDDYDGGELVIEDTY--------------GEHRVKLPAGDLVLYPS---------TSLHRVTPVTRGVR 169 (226)
T ss_pred EEEEEEEEeCCCCCCcCCceEEecCC--------------CcEEEecCCCeEEEECC---------CCceeeeeccCccE
Confidence 6899999999875 79999998742 25789999999999996 69999999999999
Q ss_pred EEEEEeEE
Q 026959 160 WSATKWIH 167 (230)
Q Consensus 160 ~~~~~Wi~ 167 (230)
|+++.|++
T Consensus 170 ~~~~~Wi~ 177 (226)
T PRK05467 170 VASFFWIQ 177 (226)
T ss_pred EEEEecHH
Confidence 99999994
No 5
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.68 E-value=2.2e-16 Score=143.53 Aligned_cols=129 Identities=23% Similarity=0.252 Sum_probs=100.0
Q ss_pred ccCCCCce-eecCeEecceeeeCCCCcHHHHHHHHHHHHhc-----CC--CCCCCCcceEEecCCCCCccccccCCCccc
Q 026959 3 ADNESGKS-IASEVRTSSGMFLSKAQDEIVASIEARIAAWT-----FL--PPENGEAMQILHYEHGQKYEPHFDFFRDKM 74 (230)
Q Consensus 3 v~~~~g~~-~~~~~RtS~~~~l~~~~~~v~~~i~~Ri~~~~-----~l--~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~ 74 (230)
.|..+|.. ....-|+|++.-+. ..+.+.|.+||+.++ ++ .+.-.|.++++||.+||+|++|.|+....
T Consensus 51 ~~~~~g~e~~~~~~~ksKqii~e---~~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~H~Dg~~~r- 126 (418)
T PHA02869 51 FFPEKRTELLSIKDRKSKQIVFE---NSLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARHRDFSTVF- 126 (418)
T ss_pred eccccCceeEeeccccceeEEec---hHHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCcccccccCceec-
Confidence 34445633 34456999998888 346667777776543 32 34567899999999999999999986542
Q ss_pred cccCCCceeEEEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccc
Q 026959 75 NQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPV 154 (230)
Q Consensus 75 ~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv 154 (230)
.+.....|+|||||++++||||.|..- ....|.|+.| |+|. ....|.|.+|
T Consensus 127 ---s~e~s~~tLLLYLNd~~~GGET~f~~~---------------~~~sI~pksg--LLFd---------h~l~Heg~~V 177 (418)
T PHA02869 127 ---SKNIICVHLLLYLEQPETGGETVIYID---------------NNTSVKLKTD--HLFD---------KTIEHESITV 177 (418)
T ss_pred ---CCCEEEEEEEEEEeccCCCCceEEEeC---------------CCceEecCCC--eEec---------cccccCCcEe
Confidence 245567899999999999999999873 2577999999 8885 5899999999
Q ss_pred cccceEEEEE
Q 026959 155 IEGEKWSATK 164 (230)
Q Consensus 155 ~~G~K~~~~~ 164 (230)
.+|.|++|..
T Consensus 178 ~sG~KyVart 187 (418)
T PHA02869 178 ESGRKCVALF 187 (418)
T ss_pred ecCeEEEEEE
Confidence 9999998853
No 6
>PHA02813 hypothetical protein; Provisional
Probab=99.64 E-value=8.5e-16 Score=137.95 Aligned_cols=130 Identities=24% Similarity=0.354 Sum_probs=96.3
Q ss_pred cCCCC-ceeecCeEecceeeeCCCCcHHHHHHHHHHHH-hcCCC----CCCCCcceEEecCCCCCccccccCCCcccccc
Q 026959 4 DNESG-KSIASEVRTSSGMFLSKAQDEIVASIEARIAA-WTFLP----PENGEAMQILHYEHGQKYEPHFDFFRDKMNQQ 77 (230)
Q Consensus 4 ~~~~g-~~~~~~~RtS~~~~l~~~~~~v~~~i~~Ri~~-~~~l~----~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~ 77 (230)
|..+| +....++|++..+.++.. +.+..+|++-|.+ +.+.+ +.-.|.++++||.+||+|++|.|+.....
T Consensus 43 ~~~~~ge~l~~~iRnNkrviid~~-~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~kGq~F~~H~Dg~~~r~--- 118 (354)
T PHA02813 43 DHEKGGEVINTNERQCKQYIIRGL-DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEKGDFFNNHRDFIHFKS--- 118 (354)
T ss_pred ccccCceEEccccccceEEEEcCH-HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEECCCcccCcccCCceeec---
Confidence 43344 455678999999999953 3444444444332 22333 35578999999999999999999865421
Q ss_pred CCCceeEEEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCcccccc
Q 026959 78 LGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEG 157 (230)
Q Consensus 78 ~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G 157 (230)
......|+|||||++++||||.|..-+ .-.|. .|.+|+|. ....|+|.||.+|
T Consensus 119 -k~~s~~tLLLYLN~~~~GGeT~f~~~~---------------~tsI~--~g~dlLFd---------h~l~Heg~~V~sG 171 (354)
T PHA02813 119 -KNCYCYHLVLYLNNTSKGGNTNIHIKD---------------NTIFS--TKNDVLFD---------KTLNHSSDIITDG 171 (354)
T ss_pred -CCceEEEEEEEEeccCCCCceEEEcCC---------------CceEe--ecceEEEe---------cccccCCcEeccC
Confidence 123889999999999999999998642 12455 99999996 5899999999999
Q ss_pred ceEEEEE
Q 026959 158 EKWSATK 164 (230)
Q Consensus 158 ~K~~~~~ 164 (230)
.||+|..
T Consensus 172 ~KyVa~~ 178 (354)
T PHA02813 172 EKNIALI 178 (354)
T ss_pred eEEEEEE
Confidence 9987743
No 7
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.63 E-value=5.1e-16 Score=116.41 Aligned_cols=91 Identities=40% Similarity=0.603 Sum_probs=69.7
Q ss_pred ceEEecCCCCCccccccCCCccccccCCCceeEEEEEeccCCC---CCcceeccCCcccccCCCCcchhcCcCeEE----
Q 026959 52 MQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVE---KGGETVFPNSEVSQSRDGNWSECARRGYAV---- 124 (230)
Q Consensus 52 lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~---~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v---- 124 (230)
+|+.+|.+|++|.||.|... ...+.+|+|||||+++ +||+|.|..... .+. ....+
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-------~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~---~~~-------~~~~~~~~~ 63 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-------DPHRRVTLLLYLNDPEWEFEGGELEFYPSKD---SDD-------VSREVEDFD 63 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-------CCSEEEEEEEESS-CS-HCEE--EEETTTS----TSS-------TCEEEGGGS
T ss_pred CEEEEECcCCEEeeeECCCC-------CCcceEEEEEEECCCCcccCCCEEEEecccc---CCC-------cceEEEecc
Confidence 58999999999999999964 2579999999999887 899999976310 000 12223
Q ss_pred -eCCCccEEEEeecCCCCCCCCCcccCCccc-cccceEEEEEeEE
Q 026959 125 -KPMKGDALLFFSLHPDASTDSTSLHGSCPV-IEGEKWSATKWIH 167 (230)
Q Consensus 125 -~P~kG~allf~n~~~~g~~D~~~~H~g~pv-~~G~K~~~~~Wi~ 167 (230)
+|+.|++|+|.+ ..++|++.|| ..|.|++++.|++
T Consensus 64 ~~p~~g~~v~F~~--------~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 64 IVPKPGRLVIFPS--------DNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp EE-BTTEEEEEES--------CTCEEEEEEE-EESEEEEEEEEEE
T ss_pred ccCCCCEEEEEeC--------CCCeecCcccCCCCCEEEEEEEEC
Confidence 399999999986 3899999999 9999999999986
No 8
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.20 E-value=7.3e-11 Score=97.91 Aligned_cols=96 Identities=30% Similarity=0.445 Sum_probs=78.3
Q ss_pred CCCcceEEecCCCCCccccccCCCccccccCCCcee---EEEEEeccCCC--CCcceeccCCcccccCCCCcchhcCcCe
Q 026959 48 NGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRI---ATVLMYLSHVE--KGGETVFPNSEVSQSRDGNWSECARRGY 122 (230)
Q Consensus 48 ~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~---~T~liYLnd~~--~GGeT~Fp~~~~~~~~~~~~~~C~~~~~ 122 (230)
.-++.++.+|..|+.|.+|.|+....... ..+.|+ +++-+||+|++ +|||++.-+.. +..
T Consensus 80 t~~~P~Fn~Y~eg~~f~fHvDgavr~~hp-~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtY--------------g~h 144 (229)
T COG3128 80 TCLPPLFNRYQEGDFFGFHVDGAVRSIHP-GSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTY--------------GNH 144 (229)
T ss_pred ccCCchhhhccCCCcccccccCcccccCC-CCCceeEeeeeeeeecCCccccCCceEEEeccc--------------cce
Confidence 45789999999999999999997653111 123244 56778999987 59999987643 267
Q ss_pred EEeCCCccEEEEeecCCCCCCCCCcccCCccccccceEEEEEeEE
Q 026959 123 AVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIH 167 (230)
Q Consensus 123 ~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~ 167 (230)
.||-..||+|+|++ .++|.+.||++|+++..-.|+.
T Consensus 145 ~VklPAGdLVlypS---------tSlH~VtPVTRg~R~asffW~q 180 (229)
T COG3128 145 RVKLPAGDLVLYPS---------TSLHEVTPVTRGERFASFFWIQ 180 (229)
T ss_pred EEeccCCCEEEccc---------ccceeccccccCceEEEeeehH
Confidence 89988899999997 7999999999999999999984
No 9
>smart00254 ShKT ShK toxin domain. ShK toxin domain
Probab=99.07 E-value=3.5e-11 Score=73.21 Aligned_cols=33 Identities=48% Similarity=1.237 Sum_probs=31.5
Q ss_pred cccCCcChHhHHhcCCCCCCccccccccCCCchhhhhcCcC
Q 026959 183 CVDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCKVC 223 (230)
Q Consensus 183 C~d~~~~C~~Wa~~geC~~np~~M~~~~~~~~~C~~sC~~C 223 (230)
|.|.+.+|+.|| .|+| +||.||. .+|++|||+|
T Consensus 1 C~D~~~~C~~wa-~~~C-~~~~~~~------~~C~ktCg~C 33 (33)
T smart00254 1 CVDRHPDCAAWA-KGFC-TNPFYMK------SNCPKTCGFC 33 (33)
T ss_pred CCCCcccCcchh-hCcC-CChhHHH------hhhhhhcccC
Confidence 789999999999 9999 7999998 9999999998
No 10
>PF01549 ShK: ShK domain-like; InterPro: IPR003582 The ShK toxin domain is found in metridin, a toxin from Metridium senile (brown sea anemone) and in ShK, a structurally defined polypeptide from the sea anemone Stoichactis helianthus (Stichodactyla helianthus) (Caribbean sea anemone). ShK is a powerful inhibitor of T lymphocyte voltage-gated potassium channels, in particular Kv1.3 []. It has been proposed that structural analogues may have use as an immunosuppressants for the prevention of graft rejection and for the treatment of autoimmune diseases []. The ShK toxin domain, is also found in one or more copies as a C-terminal domain in the metallopeptidases of Caenorhabditis elegans. The metallopeptidases belonging to MEROPS peptidase families: M10A, M12A and M14A. The majority belonging to M12A, the astacin/adamalysin family of metallopeptidases.; PDB: 1BGK_A 2K72_A.
Probab=98.76 E-value=1.2e-09 Score=67.90 Aligned_cols=36 Identities=36% Similarity=0.912 Sum_probs=28.7
Q ss_pred ccccCCcChHhHHhcCCCCCCc--cccccccCCCchhhhhcCcC
Q 026959 182 DCVDEDLNCVVWAKAGECKKNP--LYMVGSKSSRGYCRKSCKVC 223 (230)
Q Consensus 182 ~C~d~~~~C~~Wa~~geC~~np--~~M~~~~~~~~~C~~sC~~C 223 (230)
.|.|.++.|+.|+..|+|..+. .||. .+||+|||+|
T Consensus 1 ~C~D~~~~C~~~~~~g~C~~~~~~~~m~------~~C~~tCg~C 38 (38)
T PF01549_consen 1 NCRDKNPNCATWANNGFCTNPFYQDFMR------KNCPKTCGFC 38 (38)
T ss_dssp ---S-HCHHHHHHCCTTTTTSH--HHHH------CCTTTTTT--
T ss_pred CCCCchhhhhhhhhhhhhcccccchhhh------chhcccCcCC
Confidence 4899999999999999999887 8998 9999999998
No 11
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.58 E-value=7.5e-08 Score=68.23 Aligned_cols=52 Identities=27% Similarity=0.443 Sum_probs=43.7
Q ss_pred CCcceEEecCCCCCccccccCCCccccccCCCceeEEEEEecc----CCCCCcceeccCC
Q 026959 49 GEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLS----HVEKGGETVFPNS 104 (230)
Q Consensus 49 ~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLn----d~~~GGeT~Fp~~ 104 (230)
.+.+++.+|..|++|.+|.|...... +.+|.+|+||||| +...||++.|+..
T Consensus 10 ~~~~~~~~~~~g~~~~~H~D~~~~~~----~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~ 65 (70)
T PF13661_consen 10 RPNFRFYRYRRGDFFGWHVDADPSSS----GKRRFLTLLLYLNEDWDEDFGGGELFFDDD 65 (70)
T ss_pred CcceeEEEcCCCCEeeeeEcCCcccc----ccceeEEEEEEecccccCccCCcEEEEeCC
Confidence 46789999999999999999976532 5889999999999 4556888888874
No 12
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.53 E-value=1.1e-07 Score=70.85 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=57.1
Q ss_pred CcceEEecC---CCCCccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEEeC
Q 026959 50 EAMQILHYE---HGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKP 126 (230)
Q Consensus 50 E~lqv~rY~---~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P 126 (230)
+.+++++|. .+..+.+|.|.. .+++|+|++ +++|++.|.... ..+.|.|
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~----------~~~~Til~~----~~~~gL~~~~~~--------------~~~~v~~ 53 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE----------DGLLTILFQ----DEVGGLQVRDDG--------------EWVDVPP 53 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES------------SSEEEEEE----TSTS-EEEEETT--------------EEEE---
T ss_pred CEEEEEECCCcccCCceeCCCcCC----------CCeEEEEec----ccchheeccccc--------------cccCccC
Confidence 568999999 899999999995 478999999 778889988742 2466777
Q ss_pred CCccEEEEe-ecC--CCCCCCCCcccCCccccccceEEEEEeEE
Q 026959 127 MKGDALLFF-SLH--PDASTDSTSLHGSCPVIEGEKWSATKWIH 167 (230)
Q Consensus 127 ~kG~allf~-n~~--~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~ 167 (230)
..+..+++. ++. -.+......+|+++|+.+|.|++++.|++
T Consensus 54 ~~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 54 PPGGFIVNFGDALEILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp -TTCEEEEEBHHHHHHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred ccceeeeeceeeeecccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 666555554 311 12345678999999999999999999985
No 13
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=98.36 E-value=1.8e-06 Score=77.83 Aligned_cols=124 Identities=23% Similarity=0.333 Sum_probs=88.7
Q ss_pred ecCeEecceeeeCCC-CcHHHHHHHHHHHHhc-C-C-CCCCCCcceEEecCCCCCccccccCCCccccccCCCceeEEEE
Q 026959 12 ASEVRTSSGMFLSKA-QDEIVASIEARIAAWT-F-L-PPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVL 87 (230)
Q Consensus 12 ~~~~RtS~~~~l~~~-~~~v~~~i~~Ri~~~~-~-l-~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l 87 (230)
....|.|...-+... .+++.++|++.|..-+ . + .+.-.+.+.+++|..|++|+.|.|.... ......-.+++
T Consensus 37 d~~~r~sk~iv~~~~~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~----~~~n~~~y~Lv 112 (339)
T PF03336_consen 37 DHEFRKSKQIVIEDSLNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKR----DSKNCLEYHLV 112 (339)
T ss_pred cccccccceEEEeccchHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhccccee----ccCCceEEEEE
Confidence 344889988777732 3678888888776532 2 1 1234467999999999999999995433 23456779999
Q ss_pred EeccCCCCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccceEEEE
Q 026959 88 MYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSAT 163 (230)
Q Consensus 88 iYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~K~~~~ 163 (230)
|||+.+++||+|.+.--+. ..-.+.+ .+-||| |....|.+.+|.+|.|++|.
T Consensus 113 LyL~~~~~GGktkiyi~~~-------------~~tvI~~--~~DvLF---------dKsl~h~s~~V~~G~K~VAl 164 (339)
T PF03336_consen 113 LYLNNPENGGKTKIYIDPN-------------DNTVIST--SEDVLF---------DKSLNHESIIVEEGRKIVAL 164 (339)
T ss_pred EEEeccCCCceEEEEECCC-------------Cceeeec--cccEEE---------eccccccceEeccCeEEEEE
Confidence 9999999999999652110 0112333 566777 45899999999999999854
No 14
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=98.30 E-value=5.8e-06 Score=70.98 Aligned_cols=126 Identities=21% Similarity=0.334 Sum_probs=87.2
Q ss_pred cCeEecceeeeCCCCcHHHHHHHHHHHHh------c--CCC--CCCCCcceEEecC-CCCCccccccCCCccccccCCCc
Q 026959 13 SEVRTSSGMFLSKAQDEIVASIEARIAAW------T--FLP--PENGEAMQILHYE-HGQKYEPHFDFFRDKMNQQLGGH 81 (230)
Q Consensus 13 ~~~RtS~~~~l~~~~~~v~~~i~~Ri~~~------~--~l~--~~~~E~lqv~rY~-~G~~y~~H~D~~~~~~~~~~~~~ 81 (230)
.++|.-..+|+...+ +-...|.-.++.+ . .+. .-.--.-.|+.|. .|-.|-.|.|+.. +--
T Consensus 97 k~iRgd~i~wi~G~e-~gc~~i~~L~s~~d~~i~h~~~r~~~~~~gRtkAMVAcYPGNGtgYVrHVDNP~-------gDG 168 (280)
T KOG3710|consen 97 KDIRGDKITWVGGNE-PGCETIMLLPSPIDSVILHCNGRLGSYIIGRTKAMVACYPGNGTGYVRHVDNPH-------GDG 168 (280)
T ss_pred hhhccCCceEecCCC-CCccceeeecccchhhhhhhccccccccccceeEEEEEecCCCceeeEeccCCC-------CCc
Confidence 469999999998643 2121111111110 0 010 0112356788898 6889999999954 457
Q ss_pred eeEEEEEeccC---CCC-Ccce-eccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccc
Q 026959 82 RIATVLMYLSH---VEK-GGET-VFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIE 156 (230)
Q Consensus 82 R~~T~liYLnd---~~~-GGeT-~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~ 156 (230)
|-+|.+.|||. +.. ||-+ .||.... .-..|.|+-+..||||| |.+-.|++.|+..
T Consensus 169 RcITcIYYlNqNWD~kv~Gg~Lri~pe~~~-------------~~adieP~fdrLlffwS-------drrnPhev~Pa~~ 228 (280)
T KOG3710|consen 169 RCITCIYYLNQNWDVKVHGGILRIFPEGST-------------TFADIEPKFDRLLFFWS-------DRRNPHEVQPAYA 228 (280)
T ss_pred eEEEEEEEcccCcceeeccceeEeccCCCC-------------cccccCcCCCeEEEEEe-------cCCCccccccccc
Confidence 99999999994 433 5444 6998542 13459999999999998 6688899999999
Q ss_pred cceEEEEEeEE
Q 026959 157 GEKWSATKWIH 167 (230)
Q Consensus 157 G~K~~~~~Wi~ 167 (230)
+||.++.|.-
T Consensus 229 -tryaitvwyf 238 (280)
T KOG3710|consen 229 -TRYAITVWYF 238 (280)
T ss_pred -cceEEEEEEe
Confidence 7999999984
No 15
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=4e-05 Score=67.08 Aligned_cols=101 Identities=28% Similarity=0.323 Sum_probs=75.6
Q ss_pred cceEEecCCCCCccccccCCCccccccCCCceeEEEEEeccC---CCCCcce-eccCCcccccCCCCcchhcCcCeEEeC
Q 026959 51 AMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSH---VEKGGET-VFPNSEVSQSRDGNWSECARRGYAVKP 126 (230)
Q Consensus 51 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd---~~~GGeT-~Fp~~~~~~~~~~~~~~C~~~~~~v~P 126 (230)
+.|+.-|.+|-+|..|-|.+.+ ...|.+|.++|++. ++.||++ .|+.....-+. +..-..+.|
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~~~~-------~~~~~ti~P 203 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRD------KDIRLATYVYYLTREWKPEYGGELRLFHSLQKNNTA-------ADSFKTIAP 203 (252)
T ss_pred eeeeeEecCCceeEeecccCCC------ccceEEEEEeccCCCCCcCCCCceeecccccccccc-------cccccccCC
Confidence 5899999999999999999865 36799999999997 6789999 78875310000 012345888
Q ss_pred CCccEEEEeecCCCCCCCCCcccCCcccc-ccceEEEEEeEEecc
Q 026959 127 MKGDALLFFSLHPDASTDSTSLHGSCPVI-EGEKWSATKWIHVRN 170 (230)
Q Consensus 127 ~kG~allf~n~~~~g~~D~~~~H~g~pv~-~G~K~~~~~Wi~~~~ 170 (230)
.=+..+||.+-. .++.|.+.+|. +..+..++.|++...
T Consensus 204 ~fn~lv~F~s~~------~Hs~h~V~~~~~~~~RlsV~GW~r~~~ 242 (252)
T COG3751 204 VFNSLVFFKSRP------SHSVHSVEEPYAAADRLSVTGWFRRPG 242 (252)
T ss_pred CCceEEEEEecC------CccceeccccccccceEEEeeEEecCC
Confidence 888888887622 24888888754 568999999997653
No 16
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=97.83 E-value=6.6e-05 Score=61.49 Aligned_cols=101 Identities=27% Similarity=0.350 Sum_probs=75.0
Q ss_pred cceEEecCCCCCccccccCCCccccccCCCceeEEEEEeccCCC---CCcceeccCCcc-cccCCCCcchhcCcCeEEeC
Q 026959 51 AMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVE---KGGETVFPNSEV-SQSRDGNWSECARRGYAVKP 126 (230)
Q Consensus 51 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~---~GGeT~Fp~~~~-~~~~~~~~~~C~~~~~~v~P 126 (230)
..-+++|++|++=..|.|..-+.. =-+-+++-||++. .|||.++-...+ .|+ ....+.+
T Consensus 63 tplllrY~~gdyn~LHqdlyGe~v-------FPlQvv~lLs~Pg~DftGGEFVltEQrPR~QS----------R~~V~~L 125 (173)
T PF09859_consen 63 TPLLLRYGPGDYNCLHQDLYGEHV-------FPLQVVILLSEPGEDFTGGEFVLTEQRPRMQS----------RAMVLPL 125 (173)
T ss_pred chhhheeCCCCccccccCCCCCcc-------cCeEEEEEcCCCCCcccCceEEEEEecCCccC----------ccccCCc
Confidence 356899999999999999865421 1146788899865 699999866443 121 3678999
Q ss_pred CCccEEEEee-cCCC----CCCCCCcccCCccccccceEEEEEeEEe
Q 026959 127 MKGDALLFFS-LHPD----ASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 127 ~kG~allf~n-~~~~----g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
++|+|++|.. ..|- |-.-....|++-+|.+|+++.+-.-||.
T Consensus 126 ~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgliFHD 172 (173)
T PF09859_consen 126 RQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLGLIFHD 172 (173)
T ss_pred CCCCEEEEecCCCCcCCCccceecccccccccccccceEEEEEEeec
Confidence 9999999984 3332 3334578899999999999998877763
No 17
>PHA02866 Hypothetical protein; Provisional
Probab=97.68 E-value=0.00013 Score=64.87 Aligned_cols=105 Identities=22% Similarity=0.274 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHHhcCCCC---CCCCcceEEecCCCCCccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCC
Q 026959 28 DEIVASIEARIAAWTFLPP---ENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNS 104 (230)
Q Consensus 28 ~~v~~~i~~Ri~~~~~l~~---~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~ 104 (230)
++|..+|. |+.++. ++. --.+-+-+++|..|.+|.-|.|..... ....+-.++||||+.++.||+|.++--
T Consensus 58 ~~v~~~v~-~~~~~~-~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~~~~----~~~~~~Y~LvLyL~~p~~GGkt~iyv~ 131 (333)
T PHA02866 58 KQVFGAVK-RVLASS-LTDYDVYVCEHLTIVKCFKGVGFDNRFSILTED----RHRGREYTLVLHLSSPKNGGKTDVCVG 131 (333)
T ss_pred HHHHHHHH-HHHhcc-CCCccEEEeeeEEEEEEecccccccceeEEEec----cCCceEEEEEEEEeccccCCceEEEeC
Confidence 56777666 444332 221 223458899999999999999987542 235567899999999999999998842
Q ss_pred cccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccceEEEEE
Q 026959 105 EVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATK 164 (230)
Q Consensus 105 ~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~K~~~~~ 164 (230)
+ -.+--.+- =++| |....|...-|.+|.|.+|..
T Consensus 132 ~----------------~t~i~~~~-DvLF---------DKsl~h~S~~V~~G~K~Vali 165 (333)
T PHA02866 132 D----------------KTVISTAD-DFLL---------EKRSEQLSNVVQEGEKIVVAV 165 (333)
T ss_pred C----------------CceEeecc-ceee---------eccccccceeeecCcEEEEEE
Confidence 2 11111222 2444 468899999999999977643
No 18
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=97.19 E-value=0.00093 Score=50.19 Aligned_cols=88 Identities=25% Similarity=0.290 Sum_probs=44.9
Q ss_pred EecCCCCCccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCcc----cccC-CCCcchhcCcCeEEeCCCc
Q 026959 55 LHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEV----SQSR-DGNWSECARRGYAVKPMKG 129 (230)
Q Consensus 55 ~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~----~~~~-~~~~~~C~~~~~~v~P~kG 129 (230)
..|++|++-.+|.= ..-.++.++||+.++..|.+.|.+-.. ..+. ......-......++|+.|
T Consensus 5 ni~~~g~~~~~H~H-----------~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G 73 (101)
T PF13759_consen 5 NIYRKGGYNEPHNH-----------PNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEG 73 (101)
T ss_dssp EEE-TT--EEEE-------------TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TT
T ss_pred EEeCCCCccCceEC-----------CCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCC
Confidence 45678877777751 234789999999999889999865321 0000 0000111234678999999
Q ss_pred cEEEEeecCCCCCCCCCcccCCcccccc-ceEEE
Q 026959 130 DALLFFSLHPDASTDSTSLHGSCPVIEG-EKWSA 162 (230)
Q Consensus 130 ~allf~n~~~~g~~D~~~~H~g~pv~~G-~K~~~ 162 (230)
++|||++ ...|++.|.... .|+++
T Consensus 74 ~lvlFPs---------~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 74 DLVLFPS---------WLWHGVPPNNSDEERISI 98 (101)
T ss_dssp EEEEEET---------TSEEEE----SSS-EEEE
T ss_pred EEEEeCC---------CCEEeccCcCCCCCEEEE
Confidence 9999997 789999998864 55544
No 19
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=96.90 E-value=0.0048 Score=54.67 Aligned_cols=122 Identities=15% Similarity=0.110 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCCCCCCCCcceEEecC-CCCCccccccCCCccccccCCCceeEEEEEeccCCCCC-cceec-cCCccc--
Q 026959 33 SIEARIAAWTFLPPENGEAMQILHYE-HGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKG-GETVF-PNSEVS-- 107 (230)
Q Consensus 33 ~i~~Ri~~~~~l~~~~~E~lqv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~G-GeT~F-p~~~~~-- 107 (230)
+|.+.+++++|-++......-+.+.. .|+.+.||.|...-.........+.+|+.|+|.|+.+. |.+.| |.....
T Consensus 94 ~l~~~~~~LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~ 173 (277)
T TIGR02408 94 RVANAARQILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFI 173 (277)
T ss_pred HHHHHHHHHcCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcc
Confidence 45556666776443221111123333 35678899997431100001123689999999998753 76765 543210
Q ss_pred -----ccCC---CCc-------chh-------cCc-CeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccc-eEEEE
Q 026959 108 -----QSRD---GNW-------SEC-------ARR-GYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGE-KWSAT 163 (230)
Q Consensus 108 -----~~~~---~~~-------~~C-------~~~-~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~-K~~~~ 163 (230)
.+.+ ..+ .+. ... -+.+.-++|++|||.. .++|++-|..... ++++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~~---------~~~H~S~~N~s~~~R~~l~ 244 (277)
T TIGR02408 174 SCVGETPRDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFDC---------NTMHGSGSNITPWPRSNVF 244 (277)
T ss_pred cCCccccchhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEcc---------ccccCCCCCCCCCcceeEE
Confidence 0000 000 000 011 1346669999999974 8999999998753 44443
No 20
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=96.87 E-value=0.0052 Score=56.86 Aligned_cols=112 Identities=23% Similarity=0.308 Sum_probs=80.1
Q ss_pred HHHHHhcCCCCCCCCcceEEecCCCCCccccccCCCccccccCCCceeEEEEEeccCCC----CCccee-ccCCcccccC
Q 026959 36 ARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVE----KGGETV-FPNSEVSQSR 110 (230)
Q Consensus 36 ~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~----~GGeT~-Fp~~~~~~~~ 110 (230)
.-|..++|--....-++-+..|..|.+-..|-|-. +.|-+.+++||.++. .||++. ||.....|++
T Consensus 103 ~~~q~vtg~~s~sk~Dms~s~Y~kgd~LL~HDD~i---------etRriaFilYL~~~Dwds~~GG~L~Lf~~d~~~~P~ 173 (476)
T KOG3844|consen 103 GEIQDVTGGLSTSKIDMSGSYYRKGDHLLCHDDVI---------ETRRIAFILYLVDPDWDSEYGGELRLFPDDCPSQPK 173 (476)
T ss_pred HHHHhccCccccceeeeceeeeeccceeccccccc---------cceEEEEEEEecCcccccccCceeEecccccccCcc
Confidence 33444554322333478999999999999998875 458899999999876 488875 7775544332
Q ss_pred CCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccce-EEEEEeEEeccC
Q 026959 111 DGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEK-WSATKWIHVRNF 171 (230)
Q Consensus 111 ~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~K-~~~~~Wi~~~~~ 171 (230)
. .-..+.|.....+||.- -|.+.|.+..|..-++ ..++.|+|....
T Consensus 174 s--------~~asl~P~~Nql~fFeV-------sp~SFH~V~Ev~sde~RlSIsGWfH~p~~ 220 (476)
T KOG3844|consen 174 S--------VAASLEPQWNQLVFFEV-------SPISFHDVEEVLSDEPRLSISGWFHFPQI 220 (476)
T ss_pred c--------hhhccCcccceEEEEEe-------cccchhhHHHHhccCcceeEeeeecCCcc
Confidence 2 12347788777777753 3689999999997654 899999997543
No 21
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=96.76 E-value=0.023 Score=48.35 Aligned_cols=91 Identities=22% Similarity=0.225 Sum_probs=60.0
Q ss_pred ceEEecCCCCCccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccC--Ccc--cccCC-CCcchhcCcCeEEeC
Q 026959 52 MQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPN--SEV--SQSRD-GNWSECARRGYAVKP 126 (230)
Q Consensus 52 lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~--~~~--~~~~~-~~~~~C~~~~~~v~P 126 (230)
.=+.++.+|++-..|. . .+-.++-..||+.++.+|.+.|-+ ... ..+.. .....-....+.|+|
T Consensus 98 ~W~ni~~~Gg~h~~H~---H--------p~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P 166 (201)
T TIGR02466 98 AWVNILPQGGTHSPHL---H--------PGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPP 166 (201)
T ss_pred EeEEEcCCCCccCceE---C--------CCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECC
Confidence 3456778898777775 1 235789999999998889888843 211 00000 000011123457999
Q ss_pred CCccEEEEeecCCCCCCCCCcccCCccccc-cceEEE
Q 026959 127 MKGDALLFFSLHPDASTDSTSLHGSCPVIE-GEKWSA 162 (230)
Q Consensus 127 ~kG~allf~n~~~~g~~D~~~~H~g~pv~~-G~K~~~ 162 (230)
+.|+.|||+| ..+|++.|... ++|+++
T Consensus 167 ~~G~lvlFPS---------~L~H~v~p~~~~~~RISi 194 (201)
T TIGR02466 167 QEGRVLLFES---------WLRHEVPPNESEEERISV 194 (201)
T ss_pred CCCeEEEECC---------CCceecCCCCCCCCEEEE
Confidence 9999999997 78999999885 456554
No 22
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=96.41 E-value=0.014 Score=48.30 Aligned_cols=79 Identities=27% Similarity=0.298 Sum_probs=57.7
Q ss_pred CccccccCCCccccccCCCceeEEEEEeccCC-CCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCC
Q 026959 62 KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHV-EKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPD 140 (230)
Q Consensus 62 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~-~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~ 140 (230)
....|.|.... +--.|+++-|... ++||..++|.++. .-.|++|.|..|++|+|-.
T Consensus 86 ~t~~HrD~~~~--------~~~~~~~~t~~~gd~~~g~l~lp~~~~-----------~~~g~~~~~~~GtVl~~~~---- 142 (171)
T PF12851_consen 86 CTHSHRDTHNM--------PNGYDVLCTLGRGDYDGGRLELPGLDP-----------NILGVAFAYQPGTVLIFCA---- 142 (171)
T ss_pred CccceecCCCC--------CCCeEEEEecCCccccCceEecccccc-----------ccCCEEEecCCCcEEEEcc----
Confidence 34566666432 2346666666543 7899999998221 0128999999999999974
Q ss_pred CCCCCCcccCCccccc-----cceEEEEEeEE
Q 026959 141 ASTDSTSLHGSCPVIE-----GEKWSATKWIH 167 (230)
Q Consensus 141 g~~D~~~~H~g~pv~~-----G~K~~~~~Wi~ 167 (230)
...+|+..||.. |+++.+.-+.|
T Consensus 143 ----~~~~Hgvtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 143 ----KRELHGVTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred ----cceeeecCcccCCCCCCCeEEEEEEEeE
Confidence 368999999997 89999887765
No 23
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=95.52 E-value=0.043 Score=44.60 Aligned_cols=113 Identities=22% Similarity=0.106 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCCCC----CCCcce-EEecC-CCCCc-cccccCCCccccccCCCceeEEEEEeccCCC-CCcceec-cC
Q 026959 33 SIEARIAAWTFLPPE----NGEAMQ-ILHYE-HGQKY-EPHFDFFRDKMNQQLGGHRIATVLMYLSHVE-KGGETVF-PN 103 (230)
Q Consensus 33 ~i~~Ri~~~~~l~~~----~~E~lq-v~rY~-~G~~y-~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~-~GGeT~F-p~ 103 (230)
.|.+.++++++-... ....++ +.+-. +|... .||.|...... ....+.+|+.|+|.|+. +.|.+.+ |.
T Consensus 70 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~---~~~~~~~~~wi~L~d~~~~~G~~~v~pG 146 (211)
T PF05721_consen 70 RILDLVRALLGSDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHT---DPPENQLTVWIALDDITPENGPLEVVPG 146 (211)
T ss_dssp HHHHHHHHHHTSSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTE---ESSSCEEEEEEESS-BBTTCTCEEEETT
T ss_pred HHHHHHHHhhCCcchhhhhhHHHHHhhhhccccCCCCCCCCCCCccccc---CCccceEEEEEeeccCCcccCceEeecC
Confidence 566667777775422 112221 22222 46665 99999865421 11678999999999985 4455654 55
Q ss_pred Cccc--cc--CC---C---Cc----c-hhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCcccccc
Q 026959 104 SEVS--QS--RD---G---NW----S-ECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEG 157 (230)
Q Consensus 104 ~~~~--~~--~~---~---~~----~-~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G 157 (230)
.... .. .. . .+ . .-...-+.+..++|++|||. ..++|++-|....
T Consensus 147 SH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~---------~~~~H~s~~N~s~ 206 (211)
T PF05721_consen 147 SHKWGVEPHEERFPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFH---------SRLIHGSGPNTSD 206 (211)
T ss_dssp GCCSCCEEECCCCCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEE---------TTSEEEEE-B-SS
T ss_pred CcCCCcccccccccccccccccccccccccCceEEeecCCCeEEEEc---------CCccccCCCCCCc
Confidence 3211 00 00 0 00 0 01134578999999999997 4899999987653
No 24
>PHA02923 hypothetical protein; Provisional
Probab=94.85 E-value=0.26 Score=44.25 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHHHhcCCC--CCCCCcceEEecCCCCCccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCc
Q 026959 28 DEIVASIEARIAAWTFLP--PENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSE 105 (230)
Q Consensus 28 ~~v~~~i~~Ri~~~~~l~--~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~ 105 (230)
+++...|++.|.+-+... +.-...+-++.|++|.. .|. .....-..+||||+.++.||+|.|+.-+
T Consensus 43 ~di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l----------~~~~~~y~LvLyL~~p~~GGt~i~~~~~ 110 (315)
T PHA02923 43 IDISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL----------TDDNMGYYLVIYLNRPKSGKTLIYPTPE 110 (315)
T ss_pred hHHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee----------ecCceEEEEEEEEeccCCCCeEEEecCC
Confidence 678888888876543322 11223588999999984 111 0123678899999999999999998742
Q ss_pred ccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccceEEEEEeEEe
Q 026959 106 VSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 106 ~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
. .+. -+- =++| |....|...-|.+|.|.+|-. +-+
T Consensus 111 t--------------~i~---~~~-DvLF---------dKsl~h~s~~V~~G~K~VAl~-V~l 145 (315)
T PHA02923 111 T--------------VIT---SSE-DIMF---------SKSLNFRFENVKRGYKLVMCS-ISL 145 (315)
T ss_pred C--------------eEe---ecc-ceee---------ecccccceeeeecCcEEEEEE-EEE
Confidence 1 111 122 2444 468899999999999998776 544
No 25
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=94.47 E-value=0.66 Score=41.45 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCCCCCCCcceEEecCCCCCccccccCCCccccc--------cCCCceeEEEEEeccCCCC-Ccceec-
Q 026959 32 ASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQ--------QLGGHRIATVLMYLSHVEK-GGETVF- 101 (230)
Q Consensus 32 ~~i~~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~--------~~~~~R~~T~liYLnd~~~-GGeT~F- 101 (230)
.+|...+++++|-++...-..-+.+...++.+.||.|...-.... .....+.+|+.|.|.|+.. -|.+.|
T Consensus 74 ~~l~~~~~~llG~~v~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~vi 153 (288)
T TIGR01762 74 PEICHRVESILGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQFI 153 (288)
T ss_pred HHHHHHHHHHhCCcEEeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEEE
Confidence 455566666776444322222344555455589999964321100 0123488999999999764 455554
Q ss_pred cCCccccc---C--------------------------------CCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCC
Q 026959 102 PNSEVSQS---R--------------------------------DGNWSECARRGYAVKPMKGDALLFFSLHPDASTDST 146 (230)
Q Consensus 102 p~~~~~~~---~--------------------------------~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~ 146 (230)
|....... . +..+......-+.+.-++|+++||. ..
T Consensus 154 PGSH~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~~~~~~~~~v~~~lkaGd~~~f~---------~~ 224 (288)
T TIGR01762 154 PGTHNSMNYDETRRMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFW---------ST 224 (288)
T ss_pred CCCCCCCCCCcccccccCccccccccccccccccccccchhhcccccCCccccceeeeeeCCceEEEEC---------CC
Confidence 43211000 0 0000001112356777899999997 48
Q ss_pred cccCCccccccc
Q 026959 147 SLHGSCPVIEGE 158 (230)
Q Consensus 147 ~~H~g~pv~~G~ 158 (230)
++|++.|.....
T Consensus 225 t~HgS~~N~S~~ 236 (288)
T TIGR01762 225 LMHASYPNSGES 236 (288)
T ss_pred ceecCCCCCCCC
Confidence 999999998853
No 26
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.30 E-value=0.25 Score=41.56 Aligned_cols=101 Identities=24% Similarity=0.268 Sum_probs=71.7
Q ss_pred cceEEecCCCCCccccccCCCccccccCCCceeEEEEEeccCCC---CCcceeccCCcc-cccCCCCcchhcCcCeEEeC
Q 026959 51 AMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVE---KGGETVFPNSEV-SQSRDGNWSECARRGYAVKP 126 (230)
Q Consensus 51 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~---~GGeT~Fp~~~~-~~~~~~~~~~C~~~~~~v~P 126 (230)
..-++.|++|.+=-.|.|..-+-. =-+-+.|-|++++ .|||.+.-...+ .|+ .+-.|.-
T Consensus 125 TpLlLqYgpgD~NcLHQDLYGelv-------FPLQvailLsePg~DfTGGEF~lvEQRPR~QS----------r~~vvpL 187 (236)
T COG3826 125 TPLLLQYGPGDYNCLHQDLYGELV-------FPLQVAILLSEPGTDFTGGEFVLVEQRPRMQS----------RPTVVPL 187 (236)
T ss_pred CceeEEecCCccchhhhhhhhcee-------eeeeEEEeccCCCCcccCceEEEEeccccccc----------CCceeec
Confidence 456899999999999999865421 1245778899876 599988765433 111 2567888
Q ss_pred CCccEEEEeecCC--C---CCCCCCcccCCccccccceEEEEEeEEe
Q 026959 127 MKGDALLFFSLHP--D---ASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 127 ~kG~allf~n~~~--~---g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
++|++++|--.+. . |-.-.-..|+..-+.+|+++.+-.-||.
T Consensus 188 rqG~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiIFHD 234 (236)
T COG3826 188 RQGDGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGIIFHD 234 (236)
T ss_pred cCCceEEEEeecCcccCccCccccchhcchhhhhcccceeeEEEeec
Confidence 9999999975431 2 2234467799999999999988776653
No 27
>KOG3371 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.26 E-value=0.07 Score=46.55 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=31.4
Q ss_pred CCccccCCcChHhHHhcC--CCCCCccccccccCCCchhhhhcCcCCC
Q 026959 180 DDDCVDEDLNCVVWAKAG--ECKKNPLYMVGSKSSRGYCRKSCKVCKP 225 (230)
Q Consensus 180 ~~~C~d~~~~C~~Wa~~g--eC~~np~~M~~~~~~~~~C~~sC~~C~~ 225 (230)
...|+|....|+.|++.+ -|... .|.- .+|++||+.|..
T Consensus 24 ~~~c~di~~~c~~w~~s~~~~r~~~-~f~~------~nc~~Sc~~c~~ 64 (243)
T KOG3371|consen 24 ARKCRDIYKSCDRWKRSDHSSRPIT-EFFD------LNCATSCGNCSR 64 (243)
T ss_pred hhhhhhhhhhhhhhhhcCccccchh-HHhh------hhhhhhccCccc
Confidence 346999999999999987 35533 4554 899999999986
No 28
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=89.63 E-value=4.7 Score=34.67 Aligned_cols=101 Identities=23% Similarity=0.229 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcceEEecCCCCCccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCccccc
Q 026959 30 IVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQS 109 (230)
Q Consensus 30 v~~~i~~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~ 109 (230)
.+..|.++++...+++....+..-|-.|.+|+.-.+|.|..... ...-++++-| |..-+|---.. .
T Consensus 96 ~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~-----~~~pI~SvSL-------G~~~~F~~~~~--~ 161 (213)
T PRK15401 96 SFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERD-----FRAPIVSVSL-------GLPAVFQFGGL--K 161 (213)
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCccc-----CCCCEEEEeC-------CCCeEEEeccc--C
Confidence 68889999988888754455677888899999999999974221 1223444433 33334432100 0
Q ss_pred CCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCcccccc
Q 026959 110 RDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEG 157 (230)
Q Consensus 110 ~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G 157 (230)
. .+....|.-..||+|+|- |.. ...+|+.-|+..|
T Consensus 162 ~-------~~~~~~l~L~~Gdllvm~-----G~s-r~~~HgVp~~~~~ 196 (213)
T PRK15401 162 R-------SDPLQRILLEHGDVVVWG-----GPS-RLRYHGILPLKAG 196 (213)
T ss_pred C-------CCceEEEEeCCCCEEEEC-----chH-hheeccCCcCCCC
Confidence 0 012467899999999984 332 3567998888765
No 29
>PHA02985 hypothetical protein; Provisional
Probab=87.74 E-value=3.2 Score=36.71 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCcceEEecCCCCCccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCccc
Q 026959 28 DEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVS 107 (230)
Q Consensus 28 ~~v~~~i~~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~ 107 (230)
..++..|++++.+- +--.+.+++..|+.|+.|.- . ...++..+|+=|..+..||..+--+-..
T Consensus 39 ~~I~~EI~~~i~E~----V~~~n~i~i~~f~~~~~~~~-~-----------~~~~~SkilICiqsAkkGG~iIi~~~~~- 101 (271)
T PHA02985 39 KIILDEIEQYIDET----VLVKNLISIEVFNKKKKYYQ-N-----------IPSRLSKIIICIQSAKKGGCIIIINNIT- 101 (271)
T ss_pred hHHHHHHHHhcCCe----EEecceeEEEEEcCCcceEe-e-----------CCCCceeEEEEEeecccCCEEEEecccc-
Confidence 45667777776432 22346799999998866532 1 1347788999999999999998633110
Q ss_pred ccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccceEEEEEeEEeccC
Q 026959 108 QSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNF 171 (230)
Q Consensus 108 ~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~~~~ 171 (230)
...-.+.|..|.||+-- |.+-....+|.+|.-.++..=+...++
T Consensus 102 -----------~~K~ii~~~~n~aVlLS---------PLs~Y~Vs~V~kGsli~i~l~idIPSm 145 (271)
T PHA02985 102 -----------NNKKIITLNINHIIILS---------PLSKYTVSKVSKGSLIIIVLDIDIPSM 145 (271)
T ss_pred -----------cCceEEecCCCeEEEec---------chhhceEEEecCCcEEEEEEEecCCce
Confidence 12567999999999985 578899999999988777665554443
No 30
>PLN02485 oxidoreductase
Probab=85.92 E-value=4.1 Score=36.88 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCCCCCC------CC---cceEEecCCCCC----------ccccccCCCccccccCCCceeEEEEEec
Q 026959 30 IVASIEARIAAWTFLPPEN------GE---AMQILHYEHGQK----------YEPHFDFFRDKMNQQLGGHRIATVLMYL 90 (230)
Q Consensus 30 v~~~i~~Ri~~~~~l~~~~------~E---~lqv~rY~~G~~----------y~~H~D~~~~~~~~~~~~~R~~T~liYL 90 (230)
+...|.+-|+..+|++... .+ .+++++|.+-.. -.+|.|+. .+|+|+.
T Consensus 155 l~~~ll~~~a~~Lgl~~~~f~~~~~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g------------~lTlL~q- 221 (329)
T PLN02485 155 LSRKILRGIALALGGSPDEFEGKMAGDPFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYG------------LLTLVNQ- 221 (329)
T ss_pred HHHHHHHHHHHHcCCChHHhhhhhccCccceEEEEeCCCCccccCCcccCcccccccCCC------------eEEEEec-
Confidence 3445555555556776321 11 378899986321 34666662 4676643
Q ss_pred cCCCCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEe----ecCCCCCCCCCcccCCccccccceEEEEEeE
Q 026959 91 SHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWI 166 (230)
Q Consensus 91 nd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~----n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi 166 (230)
|...||-=++... + .-+.|+|..|..||-- ..+-|| .-..++|.+.+.....++.+.-++
T Consensus 222 -d~~~~GLqV~~~~-------g-------~Wi~V~p~pg~~vVNiGD~L~~~TnG-~~~St~HRVv~~~~~~R~Si~~F~ 285 (329)
T PLN02485 222 -DDDITALQVRNLS-------G-------EWIWAIPIPGTFVCNIGDMLKIWSNG-VYQSTLHRVINNSPKYRVCVAFFY 285 (329)
T ss_pred -cCCCCeeeEEcCC-------C-------cEEECCCCCCcEEEEhHHHHHHHHCC-EeeCCCceecCCCCCCeEEEEEEe
Confidence 4344564444321 1 2488999999777632 011122 234688999765555788888877
Q ss_pred Ee
Q 026959 167 HV 168 (230)
Q Consensus 167 ~~ 168 (230)
+-
T Consensus 286 ~p 287 (329)
T PLN02485 286 ET 287 (329)
T ss_pred cC
Confidence 43
No 31
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=85.66 E-value=6.3 Score=34.97 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCcceEEecCCCCCccc-cccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCcc
Q 026959 28 DEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEP-HFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEV 106 (230)
Q Consensus 28 ~~v~~~i~~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~-H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~ 106 (230)
..++..|++.+.+ ++.-.+.+++..|..|+-|+- +.+ .....++|+=|+.+..||..++-+..
T Consensus 32 ~~i~~EI~kh~~e----~V~~~~~i~i~~f~~~~~~~~~~~~-----------~~~~sr~lvCi~sakkGG~iii~~~~- 95 (266)
T PF06822_consen 32 KIILSEIEKHINE----PVYVNNLISIQVFDKGQCYKSRIQD-----------NSSLSRILVCIQSAKKGGCIIIRNTI- 95 (266)
T ss_pred HHHHHHHHHhcCC----eEEecCcEEEEEEeCCCceeccccC-----------CCcceeEEEEeeccccCCeEEEeecc-
Confidence 3556666666633 333456899999999988853 221 34678899999999999998875532
Q ss_pred cccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccceEEEEEeEEeccC
Q 026959 107 SQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNF 171 (230)
Q Consensus 107 ~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~~~~ 171 (230)
....-.++|..|.||+-- |.+.....+|.+|.-.++..=+...++
T Consensus 96 -----------~~~kkii~~~~~~aVlLs---------pl~~y~Vs~V~~G~~i~i~l~idIPSm 140 (266)
T PF06822_consen 96 -----------SNDKKIITPNQNMAVLLS---------PLADYDVSNVTKGSMIIIVLDIDIPSM 140 (266)
T ss_pred -----------cCCceEEecCCCeEEEec---------chhheEEEEecCCcEEEEEEEeccCcc
Confidence 123568999999999975 578899999999998887766655554
No 32
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=84.98 E-value=2.5 Score=34.61 Aligned_cols=102 Identities=23% Similarity=0.185 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcC-CCCCCCCcceEEecCCCCCccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCccc
Q 026959 29 EIVASIEARIAAWTF-LPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVS 107 (230)
Q Consensus 29 ~v~~~i~~Ri~~~~~-l~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~ 107 (230)
+.+..+.+++....+ .+........|..|..|+.-.+|.|.... ..+..++|+-| |+..+|--...
T Consensus 75 ~~l~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~-----~~~~~I~slSL-------G~~~~~~f~~~- 141 (194)
T PF13532_consen 75 EWLSRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEY-----GFGPPIASLSL-------GSSRVFRFRNK- 141 (194)
T ss_dssp HHHHHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC------CCSEEEEEEE-------ES-EEEEEEEC-
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccc-----cCCCcEEEEEE-------ccCceEEEeec-
Confidence 345666666666554 22233445677789999989999999732 13567777666 33333321100
Q ss_pred ccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCcccccc
Q 026959 108 QSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEG 157 (230)
Q Consensus 108 ~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G 157 (230)
.. .+.-+.|.-..|+++++. |...... |+..|+..+
T Consensus 142 ~~--------~~~~~~~~L~~gsl~vm~-----g~~r~~~-H~I~~~~~~ 177 (194)
T PF13532_consen 142 SD--------DDEPIEVPLPPGSLLVMS-----GEARYDW-HGIPPVKKD 177 (194)
T ss_dssp GG--------TS-EEEEEE-TTEEEEEE-----TTHHHHE-EEE-S-SCE
T ss_pred cC--------CCccEEEEcCCCCEEEeC-----hHHhhhe-eEcccccCC
Confidence 00 012477888899999997 3333344 998888774
No 33
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=84.88 E-value=4.1 Score=35.91 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCCCC--------CCCcceEEecCCC------CCccccccCCCccccccCCCceeEEEEEeccCCCCC
Q 026959 31 VASIEARIAAWTFLPPE--------NGEAMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKG 96 (230)
Q Consensus 31 ~~~i~~Ri~~~~~l~~~--------~~E~lqv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~G 96 (230)
..+|.+-|+..+|++.. ....+++++|.+- --..+|.|+ -.+|+|+. +++ |
T Consensus 89 ~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~------------g~lTlL~q-d~v--~ 153 (262)
T PLN03001 89 AQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDF------------GAITLLIQ-DDV--E 153 (262)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCC------------CeeEEEEe-CCC--C
Confidence 44444445555677631 1224788889752 124567776 24777755 332 5
Q ss_pred cceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEe----ecCCCCCCCCCcccCCccccccceEEEEEeEE
Q 026959 97 GETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWIH 167 (230)
Q Consensus 97 GeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~----n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~ 167 (230)
|==+... + .-+.|+|..|..||-- ..+.|| .-..++|.+.-.....+|.+.-+++
T Consensus 154 GLqV~~~--------g-------~Wi~V~p~p~a~vVNiGD~l~~~tng-~~~S~~HRVv~~~~~~R~Sia~F~~ 212 (262)
T PLN03001 154 GLQLLKD--------A-------EWLMVPPISDAILIIIADQTEIITNG-NYKSAQHRAIANANKARLSVATFHD 212 (262)
T ss_pred ceEEeeC--------C-------eEEECCCCCCcEEEEccHHHHHHhCC-ccccccceEEcCCCCCEEEEEEEEc
Confidence 5333322 1 2578999999766632 011122 2346789887554557898888774
No 34
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.24 E-value=13 Score=34.11 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcCCC--CC--------CCCcceEEecCCCC----C--ccccccCCCccccccCCCceeEEEEEeccCC
Q 026959 30 IVASIEARIAAWTFLP--PE--------NGEAMQILHYEHGQ----K--YEPHFDFFRDKMNQQLGGHRIATVLMYLSHV 93 (230)
Q Consensus 30 v~~~i~~Ri~~~~~l~--~~--------~~E~lqv~rY~~G~----~--y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~ 93 (230)
+..+|.+-|+..+|++ .. ....+++++|.+-. . ..+|.|+. .+|+|+. |
T Consensus 170 La~~ll~~lA~~Lgl~~~~~~f~~~~~~~~~~lRl~~YPp~~~~~~~~g~~aHTD~g------------~lTlL~Q--d- 234 (341)
T PLN02984 170 IAVTLFEAIAKTLSLELSGDQKMSYLSESTGVIRVYRYPQCSNEAEAPGMEVHTDSS------------VISILNQ--D- 234 (341)
T ss_pred HHHHHHHHHHHHcCCCcchhHHHHHhcCccceEEEEeCCCCCCcccccCccCccCCC------------ceEEEEe--C-
Confidence 3444445555556777 21 12258999998632 2 34777763 4777765 3
Q ss_pred CCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEe----ecCCCCCCCCCcccCCc-cccccceEEEEEeEE
Q 026959 94 EKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFF----SLHPDASTDSTSLHGSC-PVIEGEKWSATKWIH 167 (230)
Q Consensus 94 ~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~----n~~~~g~~D~~~~H~g~-pv~~G~K~~~~~Wi~ 167 (230)
..||==+... + .-+.|+|..|..||-- ..+.|| .-..++|.+- +-....+|.+.-+++
T Consensus 235 ~v~GLQV~~~--------g-------~Wv~V~p~pgalVVNiGD~Le~wTNg-~~kSt~HRVv~~~~~~~R~Sia~F~~ 297 (341)
T PLN02984 235 EVGGLEVMKD--------G-------EWFNVKPIANTLVVNLGDMMQVISDD-EYKSVLHRVGKRNKKKERYSICYFVF 297 (341)
T ss_pred CCCCeeEeeC--------C-------ceEECCCCCCeEEEECChhhhhhcCC-eeeCCCCccccCCCCCCeEEEEEEec
Confidence 2356333322 1 2588999998877743 011122 2346889993 433457888887764
No 35
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=82.49 E-value=11 Score=31.00 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcceEEecCCCCCccccccC
Q 026959 29 EIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDF 69 (230)
Q Consensus 29 ~v~~~i~~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~H~D~ 69 (230)
+.+..|.++|+...+++....+..-|-.|.+|+.-.+|.|-
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~ 114 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDR 114 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCcccccccc
Confidence 67889999999998886666677888889999999999994
No 36
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.26 E-value=6.4 Score=35.44 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=60.0
Q ss_pred ccccccCCCccccccCCCceeEEEEEeccCCC-CCcceec-cCCcccc--cCCCCc-chhcCcCeEEeCCCccEEEEeec
Q 026959 63 YEPHFDFFRDKMNQQLGGHRIATVLMYLSHVE-KGGETVF-PNSEVSQ--SRDGNW-SECARRGYAVKPMKGDALLFFSL 137 (230)
Q Consensus 63 y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~-~GGeT~F-p~~~~~~--~~~~~~-~~C~~~~~~v~P~kG~allf~n~ 137 (230)
=.+|.|+... ..+..-+..+.+=|.|.. +-|.|.+ |...... ++.... ..-.+..+-|.-.|||||||.
T Consensus 133 t~~HqD~~~~----~~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~~~r~d~~~y~~~~~~pv~lekGDallF~-- 206 (299)
T COG5285 133 TRWHQDYPLV----SPGYPALVNAWIALCDFTEDNGATLVVPGSHKWDVIPERPDHETYLERNAVPVELEKGDALLFN-- 206 (299)
T ss_pred cccccccccc----cCCccceEEEEEeccccccccCceEEEecccccccCCCCCCccchhhhcceeeeecCCCEEEEc--
Confidence 3689996433 234556677888888865 4677765 5532211 111111 111234677889999999996
Q ss_pred CCCCCCCCCcccCCccccccceEEEEEeEEeccC
Q 026959 138 HPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNF 171 (230)
Q Consensus 138 ~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~~~~ 171 (230)
+.++|++--...+.+-++...--...+
T Consensus 207 -------~~L~HaA~aNrT~~~R~A~~~~~~~~~ 233 (299)
T COG5285 207 -------GSLWHAAGANRTSADRVALTLQFTVSF 233 (299)
T ss_pred -------chhhhhhhcCCCCcccceEEEEEeecc
Confidence 589999999988866666554444444
No 37
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.64 E-value=5.8 Score=33.62 Aligned_cols=52 Identities=27% Similarity=0.482 Sum_probs=30.4
Q ss_pred EEEeccCCC--CCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccc
Q 026959 86 VLMYLSHVE--KGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIE 156 (230)
Q Consensus 86 ~liYLnd~~--~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~ 156 (230)
+.|++-|=+ .||||.....+. ++.+..---..|.++|-. |.+.+|..||+.-
T Consensus 148 I~I~~vDR~NI~gGet~lY~~~~-----------~~p~f~kvl~pGe~~~l~--------Dh~~~H~~tpi~p 201 (226)
T COG4340 148 IIIMLVDRQNIDGGETDLYAPDG-----------ASPGFFKVLAPGEAVFLD--------DHRVLHGVTPIVP 201 (226)
T ss_pred EEEEEeeeccccCceEEEEccCC-----------CCcceEEeccCCcEEEec--------cchhcccccceec
Confidence 445555533 599998644211 012333334456665543 7899999999874
No 38
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=79.66 E-value=9.3 Score=34.62 Aligned_cols=109 Identities=12% Similarity=0.147 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCCCCC-------C----CCcceEEecCCCC------CccccccCCCccccccCCCceeEEEEEeccC
Q 026959 30 IVASIEARIAAWTFLPPE-------N----GEAMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSH 92 (230)
Q Consensus 30 v~~~i~~Ri~~~~~l~~~-------~----~E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd 92 (230)
+..+|.+-|+..+|+|.+ . .-.+++++|.+-. -..+|.|+. .+|+|+. |
T Consensus 127 l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YPp~~~~~~~~G~~~HTD~g------------~lTlL~q--d 192 (321)
T PLN02299 127 LAEELLDLLCENLGLEKGYLKKAFHGSKGPTFGTKVSNYPPCPKPDLVKGLRAHTDAG------------GIILLFQ--D 192 (321)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCCCCccceeeeEecCCCCCcccccCccCccCCC------------eEEEEEe--c
Confidence 344444455555677631 1 1137899998521 245777773 4677643 3
Q ss_pred CCCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEe----ecCCCCCCCCCcccCCccccccceEEEEEeEEe
Q 026959 93 VEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 93 ~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~----n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
...||==++.. + .-+.|+|..|..||-- ..+.|| .-..++|.+.....+.++.+.-+++-
T Consensus 193 ~~v~GLQV~~~--------g-------~Wi~V~p~pg~lvVNiGD~l~~~Tng-~~kS~~HRVv~~~~~~R~Si~~F~~p 256 (321)
T PLN02299 193 DKVSGLQLLKD--------G-------EWVDVPPMRHSIVVNLGDQLEVITNG-KYKSVMHRVVAQTDGNRMSIASFYNP 256 (321)
T ss_pred CCCCCcCcccC--------C-------eEEECCCCCCeEEEEeCHHHHHHhCC-ceecccceeecCCCCCEEEEEEEecC
Confidence 33455333322 1 2578999998777642 011223 23578898875456689999887754
No 39
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=79.17 E-value=12 Score=33.42 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCC-CCCCC----CcceEEecCCC------CCccccccCCCccccccCCCceeEEEEEeccCCCCCcce
Q 026959 31 VASIEARIAAWTFL-PPENG----EAMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGET 99 (230)
Q Consensus 31 ~~~i~~Ri~~~~~l-~~~~~----E~lqv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT 99 (230)
..+|.+-|+..+|+ +.... ..+++++|.+- -.-.+|.|+. .+|+|+. |...||==
T Consensus 125 ~~~ll~~la~~Lgl~~~~~f~~~~~~lr~~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~q--d~~~~GLq 190 (300)
T PLN02365 125 AMDLARKLAESLGLVEGDFFQGWPSQFRINKYNFTPETVGSSGVQIHTDSG------------FLTILQD--DENVGGLE 190 (300)
T ss_pred HHHHHHHHHHHcCCCChHHHhhcccceeeeecCCCCCccccccccCccCCC------------ceEEEec--CCCcCceE
Confidence 34444445555677 53222 35889999542 1134666662 4777754 33345533
Q ss_pred eccCCcccccCCCCcchhcCcCeEEeCCCccEEEEe----ecCCCCCCCCCcccCCccccccceEEEEEeEE
Q 026959 100 VFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWIH 167 (230)
Q Consensus 100 ~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~----n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~ 167 (230)
+.... ++ .-+.|.|..|..||-- ..+.|| .-..++|.+...-..++|.+.-+++
T Consensus 191 V~~~~------~g-------~Wi~V~p~pga~vVNiGD~l~~~TNG-~~~St~HRVv~~~~~~R~Si~~F~~ 248 (300)
T PLN02365 191 VMDPS------SG-------EFVPVDPLPGTLLVNLGDVATAWSNG-RLCNVKHRVQCKEATMRISIASFLL 248 (300)
T ss_pred EEECC------CC-------eEEecCCCCCeEEEEhhHHHHHHhCC-ceecccceeEcCCCCCEEEEEEEec
Confidence 33220 11 2478999999877732 001122 3457889886544557998887764
No 40
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=78.89 E-value=22 Score=32.34 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCCCC--------CCCcceEEecCCCC------CccccccCCCccccccCCCceeEEEEEeccCCCCC
Q 026959 31 VASIEARIAAWTFLPPE--------NGEAMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKG 96 (230)
Q Consensus 31 ~~~i~~Ri~~~~~l~~~--------~~E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~G 96 (230)
..+|.+-|+..+|||.. ....+++++|.+-. -..+|.|+. .+|+|+. |...|
T Consensus 163 ~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~q--d~~v~ 228 (337)
T PLN02639 163 GFRLQEAISESLGLEKDYIKNVLGEQGQHMAVNYYPPCPEPELTYGLPAHTDPN------------ALTILLQ--DQQVA 228 (337)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCccEEEEEcCCCCCCcccccCCCCCcCCC------------ceEEEEe--cCCcC
Confidence 34444445555677632 22357888898631 144676662 4677654 33345
Q ss_pred cceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecC------CCCCCCCCcccCCccccccceEEEEEeEEe
Q 026959 97 GETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLH------PDASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 97 GeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~------~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
|==++++- .-+.|+|..|..||- +. .|| .-..++|.+-.....++|++.-+++-
T Consensus 229 GLQV~~~g---------------~Wi~V~p~pg~lVVN--iGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Sia~F~~p 288 (337)
T PLN02639 229 GLQVLKDG---------------KWVAVNPHPGAFVIN--IGDQLQALSNG-RYKSVWHRAVVNTDKERMSVASFLCP 288 (337)
T ss_pred ceEeecCC---------------eEEeccCCCCeEEEe--chhHHHHHhCC-eeeccCcccccCCCCCEEEEEEEecC
Confidence 53344321 258899999987773 32 122 23468899854334579999887743
No 41
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=77.30 E-value=20 Score=32.84 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCCCCC-----C----CcceEEecCCC----C--CccccccCCCccccccCCCceeEEEEEeccCCCC
Q 026959 31 VASIEARIAAWTFLPPEN-----G----EAMQILHYEHG----Q--KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEK 95 (230)
Q Consensus 31 ~~~i~~Ri~~~~~l~~~~-----~----E~lqv~rY~~G----~--~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~ 95 (230)
..+|.+-|+.-+|++... . -.+++++|.+- . ...+|.|+. .+|+|+. |...
T Consensus 175 ~~~ll~~la~~LGl~~~~f~~~~~~~~~~~lRl~~YPp~~~~~~~~g~~~HTD~g------------~lTlL~q--d~~v 240 (348)
T PLN00417 175 IEKFFKAMARSLELEENCFLEMYGENATMDTRFNMYPPCPRPDKVIGVKPHADGS------------AFTLLLP--DKDV 240 (348)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhccCccceeeeeecCCCCCcccccCCcCccCCC------------ceEEEEe--cCCC
Confidence 334444444456776421 1 13789999752 1 245677763 4676644 3334
Q ss_pred CcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCC-----CCCCCCCcccCCccccccceEEEEEeEEe
Q 026959 96 GGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHP-----DASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 96 GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~-----~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
||==+... + .-+.|+|..|..||- +.. .+..-..++|.+-+.....+|.+.-+++-
T Consensus 241 ~GLQV~~~--------g-------~Wi~V~p~pg~lVVN--iGD~Le~~Tng~~kSt~HRVv~~~~~~R~Si~fF~~P 301 (348)
T PLN00417 241 EGLQFLKD--------G-------KWYKAPIVPDTILIN--VGDQMEIMSNGIYKSPVHRVVTNREKERISVATFCIP 301 (348)
T ss_pred CceeEeEC--------C-------eEEECCCCCCcEEEE--cChHHHHHhCCeecccceEEecCCCCCEEEEEEEecC
Confidence 55333322 1 258899999987764 221 01234578899876556689999887753
No 42
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=77.11 E-value=9.9 Score=32.24 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=62.1
Q ss_pred eEecceeeeCCCCcHHHHHHHHHHHHhcCCCCCCCCcceEEecCCCCCccccccCCCccccccCCCceeEEEEEeccCCC
Q 026959 15 VRTSSGMFLSKAQDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVE 94 (230)
Q Consensus 15 ~RtS~~~~l~~~~~~v~~~i~~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~ 94 (230)
+|+|...-+...-.|....+...+...++.+....|..-|-.|.+|..-.+|.|--... ...-++++-|
T Consensus 71 y~y~~~~p~~~~p~p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~-----~~~~v~slSL------ 139 (194)
T COG3145 71 YRYSLRSPLTGKPWPPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEED-----DRPPVASLSL------ 139 (194)
T ss_pred ccccccccCCCCCCCccHHHHHHHHHHhcCCCCChhheeEEeccCCCcccccccccccc-----CCCceEEEec------
Confidence 45554444443222455667777777888888888889999999999999999986431 1122333333
Q ss_pred CCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEe
Q 026959 95 KGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFF 135 (230)
Q Consensus 95 ~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~ 135 (230)
|....|-.-... . .....++.-..||+|++-
T Consensus 140 -g~~~~F~~~~~~--------r-~~~~~~~~L~~Gdvvvm~ 170 (194)
T COG3145 140 -GAPCIFRLRGRR--------R-RGPGLRLRLEHGDVVVMG 170 (194)
T ss_pred -CCCeEEEecccc--------C-CCCceeEEecCCCEEEec
Confidence 323333221000 0 123678999999999995
No 43
>PLN02904 oxidoreductase
Probab=77.10 E-value=25 Score=32.35 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCCCC--------CCCcceEEecCCC------CCccccccCCCccccccCCCceeEEEEEeccCCCCC
Q 026959 31 VASIEARIAAWTFLPPE--------NGEAMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKG 96 (230)
Q Consensus 31 ~~~i~~Ri~~~~~l~~~--------~~E~lqv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~G 96 (230)
..+|.+-|+..+|++.+ ....+++.+|.+- --..+|.|+ -.+|+|+. |+ +
T Consensus 181 ~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~p~~~~~~g~~~HtD~------------g~lTlL~q--d~--~ 244 (357)
T PLN02904 181 HKQLIEAISESLGLEKNYLQEEIEEGSQVMAVNCYPACPEPEIALGMPPHSDF------------GSLTILLQ--SS--Q 244 (357)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCcccEEEeeecCCCCCcccccCCcCccCC------------CceEEEec--CC--C
Confidence 34444445555677631 2224788889862 113467766 24788864 53 4
Q ss_pred cceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCC-----CCCCCCcccCCccccccceEEEEEeEE
Q 026959 97 GETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPD-----ASTDSTSLHGSCPVIEGEKWSATKWIH 167 (230)
Q Consensus 97 GeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~-----g~~D~~~~H~g~pv~~G~K~~~~~Wi~ 167 (230)
|==+... ++ .-+.|+|..|..||- +..- +..-..++|.+-.....++|.+.-+++
T Consensus 245 GLQV~~~-------~g-------~Wi~V~p~pgalVVN--iGD~Le~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~ 304 (357)
T PLN02904 245 GLQIMDC-------NK-------NWVCVPYIEGALIVQ--LGDQVEVMSNGIYKSVVHRVTVNKDYKRLSFASLHS 304 (357)
T ss_pred eeeEEeC-------CC-------CEEECCCCCCeEEEE--ccHHHHHHhCCeeeccCCcccCCCCCCEEEEEEeec
Confidence 5333322 11 258899999977763 3210 113357889885444557888887774
No 44
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=75.17 E-value=5.9 Score=33.35 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCcc----eEEecCCCCC-------ccccccCCCccccccCCCceeEEEEEeccCCCCC
Q 026959 28 DEIVASIEARIAAWTFLPPENGEAM----QILHYEHGQK-------YEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKG 96 (230)
Q Consensus 28 ~~v~~~i~~Ri~~~~~l~~~~~E~l----qv~rY~~G~~-------y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~G 96 (230)
.+++++|......+++......+++ .-.|+..... =..|.|+ -.-++++||--+++ +|
T Consensus 70 ~~~~~~ll~~~~~~~~~~~~~~~~~~i~vHq~Ri~a~~~~~g~ptPEGiH~DG----------~d~v~~~li~r~Ni-~G 138 (195)
T PF10014_consen 70 NPVLQALLRFDAEIFGWDEDSSEPWHIGVHQIRIIATPDEPGEPTPEGIHRDG----------VDFVFIHLINRHNI-EG 138 (195)
T ss_dssp SHHHHHHHHHHHHHHHCCS-GGGEEEEEEEEEEEETTTS--B--STTSSB--S----------SSEEEEEEEEEESE-EE
T ss_pred CHHHHHHHHHHHHHhcccccCCCCEEEEEEEEEEEEecCccCCcCCCCccCCC----------CCEEEEEEEcCCCc-cC
Confidence 5677777777777766554222333 2344443211 1234444 45678888888778 68
Q ss_pred cceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccc
Q 026959 97 GETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIE 156 (230)
Q Consensus 97 GeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~ 156 (230)
|+|.....+.. ......--..|+.+++. |.+.+|.+.||..
T Consensus 139 G~s~i~~~~~~-----------~~~~~~l~~p~d~l~~~--------D~~~~H~vtpI~~ 179 (195)
T PF10014_consen 139 GESQIYDNDKE-----------ILFFFTLLEPGDTLLVD--------DRRVWHYVTPIRP 179 (195)
T ss_dssp --EEEEETTSS-----------EEEEE---STTEEEEEE--------TTTEEEEE--EEE
T ss_pred ceEEEEeCCCC-----------cceEEEecCCCCEEEEe--------CCcceECCCceec
Confidence 88875332110 01223446778888885 6899999999984
No 45
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=74.97 E-value=26 Score=32.05 Aligned_cols=105 Identities=23% Similarity=0.250 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCCCCC--------CCCcceEEecCCC------CCccccccCCCccccccCCCceeEEEEEeccCCCCC
Q 026959 31 VASIEARIAAWTFLPPE--------NGEAMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKG 96 (230)
Q Consensus 31 ~~~i~~Ri~~~~~l~~~--------~~E~lqv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~G 96 (230)
..+|.+-|+..+|++.+ ....+++.+|.+- -.-.+|.|+. .+|+|+. | +.|
T Consensus 170 ~~~il~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~G~~~HtD~g------------~lTlL~Q--d-~v~ 234 (348)
T PLN02912 170 VLTLLEAISESLGLEKDRVSNTLGKHGQHMAINYYPPCPQPELTYGLPGHKDAN------------LITVLLQ--D-EVS 234 (348)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCccceeeeeecCCCCChhhcCCcCCCcCCC------------ceEEEEE--C-CCC
Confidence 34444444445676631 2235788889862 1145677663 4677755 3 345
Q ss_pred cceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecC------CCCCCCCCcccCCccccccceEEEEEeEEe
Q 026959 97 GETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLH------PDASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 97 GeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~------~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
|==++..- .-+.|+|..|..||- +. .|| .-..++|.+-....+.+|.+.-+++-
T Consensus 235 GLQV~~~g---------------~Wi~V~p~pgalvVN--iGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Sia~F~~p 294 (348)
T PLN02912 235 GLQVFKDG---------------KWIAVNPIPNTFIVN--LGDQMQVISND-KYKSVLHRAVVNTDKERISIPTFYCP 294 (348)
T ss_pred ceEEEECC---------------cEEECCCcCCeEEEE--cCHHHHHHhCC-EEEcccccccCCCCCCEEEEEEEecC
Confidence 64444321 258899999876663 22 122 23578899854445679999887754
No 46
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=74.72 E-value=29 Score=31.97 Aligned_cols=108 Identities=16% Similarity=0.109 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCCCCCCC--------CcceEEecCCC----CC--ccccccCCCccccccCCCceeEEEEEeccCCCCC
Q 026959 31 VASIEARIAAWTFLPPENG--------EAMQILHYEHG----QK--YEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKG 96 (230)
Q Consensus 31 ~~~i~~Ri~~~~~l~~~~~--------E~lqv~rY~~G----~~--y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~G 96 (230)
..+|.+-|+..+|++.+.. .-+++.+|.+- .. -.+|.|+. .+|+|+. .++..|
T Consensus 184 ~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q-d~~~v~ 250 (361)
T PLN02758 184 CQRLLKYIAMTLGLKEDRFEEMFGEAVQAVRMNYYPPCSRPDLVLGLSPHSDGS------------ALTVLQQ-GKGSCV 250 (361)
T ss_pred HHHHHHHHHHHcCCChhhhHHHhcCccceeeeecCCCCCCcccccCccCccCCc------------eeEEEEe-CCCCCC
Confidence 4444444555567764321 24677888752 11 34677662 4677754 122445
Q ss_pred cceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEee----cCCCCCCCCCcccCCccccccceEEEEEeEE
Q 026959 97 GETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIH 167 (230)
Q Consensus 97 GeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n----~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~ 167 (230)
|==++.. + .-+.|+|..|..||--- .+.|| .-..++|.+-.....+++.+.-+++
T Consensus 251 GLQV~~~--------g-------~Wi~V~p~pgalVVNiGD~L~~~SNG-~~kS~~HRVv~~~~~~R~Sia~F~~ 309 (361)
T PLN02758 251 GLQILKD--------N-------TWVPVHPVPNALVINIGDTLEVLTNG-KYKSVEHRAVTNKEKDRLSIVTFYA 309 (361)
T ss_pred CeeeeeC--------C-------EEEeCCCCCCeEEEEccchhhhhcCC-eeecccceeecCCCCCEEEEEEEec
Confidence 6333322 1 25789999987776431 11122 3357889886544456888887664
No 47
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=72.22 E-value=35 Score=31.12 Aligned_cols=107 Identities=20% Similarity=0.162 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCCCC--------CCCcceEEecCCCC------CccccccCCCccccccCCCceeEEEEEeccCCCCC
Q 026959 31 VASIEARIAAWTFLPPE--------NGEAMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKG 96 (230)
Q Consensus 31 ~~~i~~Ri~~~~~l~~~--------~~E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~G 96 (230)
...|.+-|+..+|++.. ....+++++|.+-. ...+|.|+. .+|+|+. | ..|
T Consensus 166 ~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YPp~~~~~~~~g~~~HtD~g------------~lTlL~q--d-~v~ 230 (345)
T PLN02750 166 AFKLLELISLSLGLPADRLNGYFKDQISFARFNHYPPCPAPHLALGVGRHKDGG------------ALTVLAQ--D-DVG 230 (345)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCcceEEEEEecCCCCCcccccCcCCCCCCC------------eEEEEec--C-CCC
Confidence 34444445555677632 22358889998631 245677762 4677644 3 245
Q ss_pred cceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCC------CCCCCCCcccCCccccccceEEEEEeEEe
Q 026959 97 GETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHP------DASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 97 GeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~------~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
|==++... ++ .-+.|+|..|..|| |+.. || .-..++|.+-.....++|.+.-+++-
T Consensus 231 GLQV~~~~------~g-------~Wi~V~p~pg~~vV--NiGD~L~~~Tng-~~~St~HRVv~~~~~~R~Si~~F~~P 292 (345)
T PLN02750 231 GLQISRRS------DG-------EWIPVKPIPDAFII--NIGNCMQVWTND-LYWSAEHRVVVNSQKERFSIPFFFFP 292 (345)
T ss_pred ceEEeecC------CC-------eEEEccCCCCeEEE--EhHHHHHHHhCC-eeecccceeccCCCCCEEEEEEeecC
Confidence 54343211 11 25889999987766 3321 22 33578999975545679988877743
No 48
>PLN02216 protein SRG1
Probab=71.85 E-value=35 Score=31.36 Aligned_cols=105 Identities=20% Similarity=0.266 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCCCC-------C--CCcceEEecCCCC------CccccccCCCccccccCCCceeEEEEEeccCCCC
Q 026959 31 VASIEARIAAWTFLPPE-------N--GEAMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEK 95 (230)
Q Consensus 31 ~~~i~~Ri~~~~~l~~~-------~--~E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~ 95 (230)
..+|.+-|+..+||+.. . ...|++.+|.+-. -..+|.|+ -.+|+|+.-++ .
T Consensus 182 ~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~------------g~lTlL~q~~~--v 247 (357)
T PLN02216 182 AKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDA------------VGLTILLQVNE--V 247 (357)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccC------------ceEEEEEecCC--C
Confidence 34444445555677631 1 1247888897621 13466665 24666655433 4
Q ss_pred CcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCC------CCCCCCCcccCCccccccceEEEEEeEE
Q 026959 96 GGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHP------DASTDSTSLHGSCPVIEGEKWSATKWIH 167 (230)
Q Consensus 96 GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~------~g~~D~~~~H~g~pv~~G~K~~~~~Wi~ 167 (230)
||==++.. + .-+.|+|..|..||- +.. || .-..++|.+-......++.+.-+++
T Consensus 248 ~GLQV~~~--------g-------~Wi~V~p~pgalvVN--iGD~L~~~TNG-~~kS~~HRVv~~~~~~R~Si~~F~~ 307 (357)
T PLN02216 248 EGLQIKKD--------G-------KWVSVKPLPNALVVN--VGDILEIITNG-TYRSIEHRGVVNSEKERLSVATFHN 307 (357)
T ss_pred CceeEEEC--------C-------EEEECCCCCCeEEEE--cchhhHhhcCC-eeeccCceeecCCCCCEEEEEEEec
Confidence 55434432 1 258899999877763 221 22 3357889985444567888887764
No 49
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=70.32 E-value=31 Score=31.81 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=51.5
Q ss_pred cceEEecCCCC------CccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEE
Q 026959 51 AMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 124 (230)
Q Consensus 51 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v 124 (230)
.+++.+|.+-. -..+|.|+. .+|+|+. | ..||==+.... ++ .-+.|
T Consensus 196 ~lrl~~YP~~~~~~~~~G~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~~------~~-------~Wi~V 247 (358)
T PLN02515 196 KVVVNYYPKCPQPDLTLGLKRHTDPG------------TITLLLQ--D-QVGGLQATRDG------GK-------TWITV 247 (358)
T ss_pred eEEEeecCCCCChhhccCCCCCCCCC------------eEEEEec--C-CCCceEEEECC------CC-------eEEEC
Confidence 46788888521 245677763 4677755 3 23553333221 01 25889
Q ss_pred eCCCccEEEEeecC------CCCCCCCCcccCCccccccceEEEEEeEEe
Q 026959 125 KPMKGDALLFFSLH------PDASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 125 ~P~kG~allf~n~~------~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
+|..|..||- +. .|| .-..++|.+-....+.+|.+.-+++-
T Consensus 248 pp~pgalVVN--iGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Si~~F~~P 294 (358)
T PLN02515 248 QPVEGAFVVN--LGDHGHYLSNG-RFKNADHQAVVNSNCSRLSIATFQNP 294 (358)
T ss_pred CCCCCeEEEE--ccHHHHHHhCC-eeeeecceEECCCCCCEEEEEEEecC
Confidence 9999876663 32 233 23578899765555679998887744
No 50
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=68.71 E-value=27 Score=32.12 Aligned_cols=86 Identities=17% Similarity=0.114 Sum_probs=49.9
Q ss_pred cceEEecCCC------CCccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEE
Q 026959 51 AMQILHYEHG------QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 124 (230)
Q Consensus 51 ~lqv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v 124 (230)
-+++++|.+- -...+|.|+. .+|+|+. +...||==++.. + .-+.|
T Consensus 214 ~lRl~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~q--~~~v~GLQV~~~--------g-------~W~~V 264 (362)
T PLN02393 214 CLRVNYYPKCPQPDLTLGLSPHSDPG------------GMTILLP--DDNVAGLQVRRD--------D-------AWITV 264 (362)
T ss_pred eeeeeecCCCCCcccccccccccCCc------------eEEEEee--CCCCCcceeeEC--------C-------EEEEC
Confidence 4777888642 1245777663 3566644 333455434422 1 24789
Q ss_pred eCCCccEEEEeecCC------CCCCCCCcccCCccccccceEEEEEeEEe
Q 026959 125 KPMKGDALLFFSLHP------DASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 125 ~P~kG~allf~n~~~------~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
+|..|..||- +.. || .-..++|.+-.....++|++.-+++-
T Consensus 265 ~p~pgalVVN--iGD~l~~~Tng-~~kSt~HRVv~~~~~~R~SiafF~~P 311 (362)
T PLN02393 265 KPVPDAFIVN--IGDQIQVLSNA-IYKSVEHRVIVNSAKERVSLAFFYNP 311 (362)
T ss_pred CCCCCeEEEE--cchhhHhhcCC-eeeccceecccCCCCCEEEEEEEecC
Confidence 9999877763 221 22 23568899854334578888887744
No 51
>PLN02704 flavonol synthase
Probab=67.83 E-value=19 Score=32.66 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCCCCC------C----CcceEEecCCCC----C--ccccccCCCccccccCCCceeEEEEEeccCCC
Q 026959 31 VASIEARIAAWTFLPPEN------G----EAMQILHYEHGQ----K--YEPHFDFFRDKMNQQLGGHRIATVLMYLSHVE 94 (230)
Q Consensus 31 ~~~i~~Ri~~~~~l~~~~------~----E~lqv~rY~~G~----~--y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~ 94 (230)
..+|.+-|+..+|++... . --+++++|.+-. . ..+|.|+. .+|+|+. |.
T Consensus 170 ~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q--d~- 234 (335)
T PLN02704 170 ADKLFKTLSLGLGLEEDELKEAVGGEELEYLLKINYYPPCPRPDLALGVVAHTDMS------------AITILVP--NE- 234 (335)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhcCCchhhhhhhhcCCCCCCcccccCccCccCCc------------ceEEEec--CC-
Confidence 344444445556776321 0 136677887521 1 34677763 4677665 32
Q ss_pred CCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCC-----CCCCCCcccCCccccccceEEEEEeEEe
Q 026959 95 KGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPD-----ASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 95 ~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~-----g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
.||==+.+. + .-+.|+|..|..||- +..- +..-..++|.+-..-...+|.+.-+++-
T Consensus 235 v~GLQV~~~--------g-------~Wi~V~p~pg~lvVN--vGD~L~~~TNg~~kSt~HRVv~~~~~~R~Si~~F~~p 296 (335)
T PLN02704 235 VQGLQVFRD--------D-------HWFDVKYIPNALVIH--IGDQIEILSNGKYKSVLHRTTVNKEKTRMSWPVFLEP 296 (335)
T ss_pred CCceeEeEC--------C-------EEEeCCCCCCeEEEE--echHHHHHhCCeeecccceeecCCCCCeEEEEEEecC
Confidence 455334332 1 257899999876663 3221 1234578898865445578988887754
No 52
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=67.80 E-value=28 Score=31.31 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=31.1
Q ss_pred CeEEeCCCccEEEEeecC------CCCCCCCCcccCCccccccceEEEEEeEEe
Q 026959 121 GYAVKPMKGDALLFFSLH------PDASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 121 ~~~v~P~kG~allf~n~~------~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
-+.|.|..|++|+- |+. .|| .-..++|.+-....+.+|.+.-+++-
T Consensus 201 Wi~V~p~p~~~lvV-NvGD~L~~~Tng-~~~S~~HRVv~~~~~~R~Si~~F~~p 252 (303)
T PLN02403 201 WVPIPPSKNNTIFV-NTGDQLEVLSNG-RYKSTLHRVMADKNGSRLSIATFYNP 252 (303)
T ss_pred EEECCCCCCCEEEE-EehHHHHHHhCC-eeecccceeecCCCCCEEEEEEEEcC
Confidence 57899999766654 222 122 33578899876666789999887753
No 53
>PLN02947 oxidoreductase
Probab=66.96 E-value=55 Score=30.37 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCCCC-----------CCCcceEEecCCCC------CccccccCCCccccccCCCceeEEEEEeccCC
Q 026959 31 VASIEARIAAWTFLPPE-----------NGEAMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHV 93 (230)
Q Consensus 31 ~~~i~~Ri~~~~~l~~~-----------~~E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~ 93 (230)
..+|.+-|+..+||+.. ...-+++.+|.+-. ...+|.|+ -.+|+|+. ++
T Consensus 195 ~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~------------g~lTlL~Q-d~- 260 (374)
T PLN02947 195 FLELMEAILESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDY------------GFLTLLLQ-DE- 260 (374)
T ss_pred HHHHHHHHHHHcCCCccchHHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCC------------CceEEEEe-cC-
Confidence 34455555555677521 12246677788631 14466666 35788866 33
Q ss_pred CCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCC------CCCCCCCcccCCccccccceEEEEEeEE
Q 026959 94 EKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHP------DASTDSTSLHGSCPVIEGEKWSATKWIH 167 (230)
Q Consensus 94 ~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~------~g~~D~~~~H~g~pv~~G~K~~~~~Wi~ 167 (230)
.||==++.+ + .-+.|+|..|..||- +.. || .-..++|.+-......++.+.-+++
T Consensus 261 -v~GLQV~~~--------g-------~Wi~V~p~pga~VVN--vGD~Lq~~SNG-~~kS~~HRVv~~~~~~R~Sia~F~~ 321 (374)
T PLN02947 261 -VEGLQIMHA--------G-------RWVTVEPIPGSFVVN--VGDHLEIFSNG-RYKSVLHRVRVNSTKPRISVASLHS 321 (374)
T ss_pred -CCCeeEeEC--------C-------EEEeCCCCCCeEEEE--eCceeeeeeCC-EEeccccccccCCCCCEEEEEEEec
Confidence 355444432 1 257899998866653 221 22 2357889885444557888887774
No 54
>PLN02997 flavonol synthase
Probab=66.68 E-value=31 Score=31.28 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=51.8
Q ss_pred cceEEecCCCC------CccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEE
Q 026959 51 AMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 124 (230)
Q Consensus 51 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v 124 (230)
-+++.+|.+-. ...+|.|+. .+|+|+. | ..||==++.. + .-+.|
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~--------g-------~Wi~V 233 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDMG------------AIALLIP--N-EVPGLQAFKD--------E-------QWLDL 233 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCCC------------ceEEEec--C-CCCCEEEeEC--------C-------cEEEC
Confidence 47888898631 245677662 4777754 3 2456444432 1 25889
Q ss_pred eCCCccEEEEee----cCCCCCCCCCcccCCccccccceEEEEEeEEe
Q 026959 125 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 125 ~P~kG~allf~n----~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
+|.+|..||--- ++.|| .-..++|.+..-....+|.+.-+++-
T Consensus 234 ~p~pgalvVNiGD~Le~~TNG-~~kSt~HRVv~~~~~~R~Si~fF~~P 280 (325)
T PLN02997 234 NYINSAVVVIIGDQLMRMTNG-RFKNVLHRAKTDKERLRISWPVFVAP 280 (325)
T ss_pred CCCCCeEEEEechHHHHHhCC-ccccccceeeCCCCCCEEEEEEEecC
Confidence 999997666420 01122 34578899865445568888877743
No 55
>PLN02276 gibberellin 20-oxidase
Probab=65.51 E-value=79 Score=29.07 Aligned_cols=87 Identities=23% Similarity=0.262 Sum_probs=52.7
Q ss_pred CcceEEecCCCC------CccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCeE
Q 026959 50 EAMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYA 123 (230)
Q Consensus 50 E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~ 123 (230)
..+++.+|.+-. --.+|.|+. .+|+|+. | ..||==++..- .-+.
T Consensus 206 ~~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~g---------------~Wi~ 255 (361)
T PLN02276 206 SIMRCNYYPPCQEPELTLGTGPHCDPT------------SLTILHQ--D-QVGGLQVFVDN---------------KWRS 255 (361)
T ss_pred ceeeeEeCCCCCCcccccCCccccCCc------------eeEEEEe--c-CCCceEEEECC---------------EEEE
Confidence 357888897631 134666662 4677764 3 34564444321 2588
Q ss_pred EeCCCccEEEEe----ecCCCCCCCCCcccCCccccccceEEEEEeEE
Q 026959 124 VKPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWIH 167 (230)
Q Consensus 124 v~P~kG~allf~----n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~ 167 (230)
|+|..|..||-- .++.|| .-..++|.+-......++.+.-+++
T Consensus 256 V~p~pgalVVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Sia~F~~ 302 (361)
T PLN02276 256 VRPRPGALVVNIGDTFMALSNG-RYKSCLHRAVVNSERERRSLAFFLC 302 (361)
T ss_pred cCCCCCeEEEEcHHHHHHHhCC-ccccccceeecCCCCCEEEEEEEec
Confidence 999999888753 011122 3357889875444567888887774
No 56
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=61.03 E-value=40 Score=30.76 Aligned_cols=107 Identities=18% Similarity=0.270 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhcCCCC--------CCCCcceEEecCC------CCCccccccCCCccccccCCCceeEEEEEeccCCCC
Q 026959 30 IVASIEARIAAWTFLPP--------ENGEAMQILHYEH------GQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEK 95 (230)
Q Consensus 30 v~~~i~~Ri~~~~~l~~--------~~~E~lqv~rY~~------G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~ 95 (230)
+..+|.+-|+.-++||. ...+-++++||.. ++.-..|.|+. ++|+|+ -...
T Consensus 146 ~~~rLL~aiA~~LdL~~d~Fd~~~~d~~~~~RLlrYP~~~~~~~~~~~GaHtD~G------------~lTLl~---Qd~~ 210 (322)
T COG3491 146 VGLRLLRAIALGLDLPEDFFDKRTSDPNSVLRLLRYPSRPAREGADGVGAHTDYG------------LLTLLF---QDDV 210 (322)
T ss_pred HHHHHHHHHHHHcCCChhhhhhccCCchheEEEEecCCCcccccccccccccCCC------------eEEEEE---eccc
Confidence 34455555555556653 2345699999994 34457888773 244443 3455
Q ss_pred CcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEee-c---CCCCCCCCCcccCCccccccceEEEEEeE
Q 026959 96 GGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFS-L---HPDASTDSTSLHGSCPVIEGEKWSATKWI 166 (230)
Q Consensus 96 GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n-~---~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi 166 (230)
||--+++... .-+.|.|..|..|+..- + ..+| .-..+.|.++--..=++|.+--++
T Consensus 211 ~GLqv~~~~g--------------~Wl~v~P~pgtlvVNiGdmLe~~Tng-~lrST~HRV~~~~~~~R~SipfF~ 270 (322)
T COG3491 211 GGLEVRPPNG--------------GWLDVPPIPGTLVVNIGDMLERWTNG-RLRSTVHRVRNPPGVDRYSIPFFL 270 (322)
T ss_pred CCeEEecCCC--------------CeeECCCCCCeEEEeHHHHHHHHhCC-eeccccceeecCCCccceeeeeec
Confidence 7766776532 26889999999998751 1 1122 335788988766554777777655
No 57
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=58.85 E-value=10 Score=32.07 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=28.3
Q ss_pred CcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccc--cccceEEEEEe
Q 026959 119 RRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPV--IEGEKWSATKW 165 (230)
Q Consensus 119 ~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv--~~G~K~~~~~W 165 (230)
+..+.+.-++|++|||.|. +.+|+..+. ..|.+++...|
T Consensus 218 ~~~~~~~~~~GDlli~dN~--------~~lHgR~~~~~~~~~R~L~R~~ 258 (258)
T PF02668_consen 218 EYTYRHRWQPGDLLIWDNH--------RVLHGRTAFDDPDGDRHLLRVW 258 (258)
T ss_dssp GGEEEEE--TTEEEEEETT--------TEEEEE--E-STTSSEEEEEEE
T ss_pred hhcccccCCCceEEEEcCC--------eeEecCCCCCCCCCCEEEEEeC
Confidence 3456788899999999984 899999998 56788887776
No 58
>PTZ00273 oxidase reductase; Provisional
Probab=58.50 E-value=29 Score=31.20 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCCCCC--------CCCcceEEecCCCC-----C--ccccccCCCccccccCCCceeEEEEEeccCCCC
Q 026959 31 VASIEARIAAWTFLPPE--------NGEAMQILHYEHGQ-----K--YEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEK 95 (230)
Q Consensus 31 ~~~i~~Ri~~~~~l~~~--------~~E~lqv~rY~~G~-----~--y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~ 95 (230)
...|.+-|+..+|++.. ....+++++|.+.. . -.+|.|+ -.+|+|+. | ..
T Consensus 150 ~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~------------g~lTlL~q--d-~~ 214 (320)
T PTZ00273 150 ALVLLRALALAIGLREDFFDSKFMEPLSVFRMKHYPALPQTKKGRTVCGEHTDY------------GIITLLYQ--D-SV 214 (320)
T ss_pred HHHHHHHHHHHhCcCHHHHHHhhCCCcceeeeeecCCCCCccccCcccccccCC------------CeEEEEec--C-CC
Confidence 34444444455666632 12347888897531 1 3466666 24677753 3 23
Q ss_pred CcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEe----ecCCCCCCCCCcccCCccccccceEEEEEeEEe
Q 026959 96 GGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 96 GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~----n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
||==++..- + .-+.|+|..|..||-- ..+.|| .-..++|.+... ..+++.+.-+++-
T Consensus 215 ~GLqV~~~~-------g-------~Wi~V~p~pg~lvVNvGD~l~~~TnG-~~kSt~HRVv~~-~~~R~Si~~F~~p 275 (320)
T PTZ00273 215 GGLQVRNLS-------G-------EWMDVPPLEGSFVVNIGDMMEMWSNG-RYRSTPHRVVNT-GVERYSMPFFCEP 275 (320)
T ss_pred CceEEECCC-------C-------CEEeCCCCCCeEEEEHHHHHHHHHCC-eeeCCCccccCC-CCCeEEEEEEEcC
Confidence 553344321 1 2478999999877642 011222 234688988643 3578888877743
No 59
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=57.61 E-value=56 Score=30.08 Aligned_cols=87 Identities=20% Similarity=0.247 Sum_probs=51.7
Q ss_pred cceEEecCCCC------CccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEE
Q 026959 51 AMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 124 (230)
Q Consensus 51 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v 124 (230)
.+++.+|.+-. ...+|.|+ -.+|+|+. | ..||==++..- + .-+.|
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~------------g~lTiL~Q--d-~v~GLQV~~~~-------~-------~Wi~V 261 (358)
T PLN02254 211 ALQLNSYPVCPDPDRAMGLAPHTDS------------SLLTILYQ--S-NTSGLQVFREG-------V-------GWVTV 261 (358)
T ss_pred eEEEecCCCCCCcccccCcCCccCC------------CcEEEEec--C-CCCCceEECCC-------C-------EEEEc
Confidence 46788888621 24567766 35788775 3 23564444331 1 25889
Q ss_pred eCCCccEEEEee----cCCCCCCCCCcccCCccccccceEEEEEeEE
Q 026959 125 KPMKGDALLFFS----LHPDASTDSTSLHGSCPVIEGEKWSATKWIH 167 (230)
Q Consensus 125 ~P~kG~allf~n----~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~ 167 (230)
+|..|..||--- .+.|| .-..++|.+-.-...+++.+.-+++
T Consensus 262 ~p~pgalVVNiGD~lq~~SNg-~~kS~~HRVv~~~~~~R~Sia~F~~ 307 (358)
T PLN02254 262 PPVPGSLVVNVGDLLHILSNG-RFPSVLHRAVVNKTRHRISVAYFYG 307 (358)
T ss_pred ccCCCCEEEEhHHHHHHHhCC-eeccccceeecCCCCCEEEEEEEec
Confidence 999998887420 11123 3457889885433457888887663
No 60
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=55.94 E-value=46 Score=30.55 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=51.1
Q ss_pred cceEEecCCC----C--CccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEE
Q 026959 51 AMQILHYEHG----Q--KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 124 (230)
Q Consensus 51 ~lqv~rY~~G----~--~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v 124 (230)
.+++.+|.+- . -..+|.|+. .+|+|+. | ..||==++.. + .-+.|
T Consensus 212 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~q--d-~v~GLQV~~~--------g-------~Wi~V 261 (360)
T PLN03178 212 QMKINYYPRCPQPDLALGVEAHTDVS------------ALTFILH--N-MVPGLQVLYE--------G-------KWVTA 261 (360)
T ss_pred hhheeccCCCCCCccccCcCCccCCC------------ceEEEee--C-CCCceeEeEC--------C-------EEEEc
Confidence 4678889752 1 145777773 4777753 3 2455333322 1 25889
Q ss_pred eCCCccEEEEeecCC------CCCCCCCcccCCccccccceEEEEEeEEe
Q 026959 125 KPMKGDALLFFSLHP------DASTDSTSLHGSCPVIEGEKWSATKWIHV 168 (230)
Q Consensus 125 ~P~kG~allf~n~~~------~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~ 168 (230)
+|..|..|| |+.. || .-..++|.+-..-...+|.+.-+++-
T Consensus 262 ~p~pg~lvV--NiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Si~~F~~P 308 (360)
T PLN03178 262 KCVPDSIVV--HIGDTLEILSNG-RYKSILHRGLVNKEKVRISWAVFCEP 308 (360)
T ss_pred CCCCCeEEE--EccHHHHHHhCC-ccccccceeecCCCCCeEEEEEEecC
Confidence 999997665 3332 22 34578899743334579999887744
No 61
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=53.88 E-value=47 Score=30.12 Aligned_cols=110 Identities=18% Similarity=0.169 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCCCCCC----------CcceEEecCCCC-----C--ccccccCCCccccccCCCceeEEEEEeccCC
Q 026959 31 VASIEARIAAWTFLPPENG----------EAMQILHYEHGQ-----K--YEPHFDFFRDKMNQQLGGHRIATVLMYLSHV 93 (230)
Q Consensus 31 ~~~i~~Ri~~~~~l~~~~~----------E~lqv~rY~~G~-----~--y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~ 93 (230)
..+|.+-|+..+||+.... ..|++++|.+-. . ..+|.|+. .+|+|+. |
T Consensus 153 ~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~q--d- 217 (332)
T PLN03002 153 SMAIAKLLALALDLDVGYFDRTEMLGKPIATMRLLRYQGISDPSKGIYACGAHSDFG------------MMTLLAT--D- 217 (332)
T ss_pred HHHHHHHHHHHcCCChHHhccccccCCCchheeeeeCCCCCCcccCccccccccCCC------------eEEEEee--C-
Confidence 3344444444556663211 247889998631 1 34676662 5788853 3
Q ss_pred CCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEe----ecCCCCCCCCCcccCCccccccceEEEEEeEE
Q 026959 94 EKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWIH 167 (230)
Q Consensus 94 ~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~----n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~ 167 (230)
..||-=++.... ..+ ..-+.|.|..|..||-- ..+.|| .-..++|.+..- ...+|.+.-+++
T Consensus 218 ~v~GLQV~~~~~---~~~-------g~Wi~Vpp~pg~~VVNiGD~L~~wTng-~~kSt~HRVv~~-~~~R~Sia~F~~ 283 (332)
T PLN03002 218 GVMGLQICKDKN---AMP-------QKWEYVPPIKGAFIVNLGDMLERWSNG-FFKSTLHRVLGN-GQERYSIPFFVE 283 (332)
T ss_pred CCCceEEecCCC---CCC-------CcEEECCCCCCeEEEEHHHHHHHHhCC-eeECcCCeecCC-CCCeeEEEEEec
Confidence 245644443210 001 12578999998877742 011122 234678888532 346888877664
No 62
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=53.23 E-value=23 Score=30.60 Aligned_cols=40 Identities=28% Similarity=0.517 Sum_probs=32.5
Q ss_pred cCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccc---cceEEEEEeEE
Q 026959 120 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIE---GEKWSATKWIH 167 (230)
Q Consensus 120 ~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~---G~K~~~~~Wi~ 167 (230)
..+.++-++|++|+|.| .+++|+..+-.. +.+|....|+.
T Consensus 218 ~~~~~~l~~Gdivi~DN--------~r~lHgR~~f~~~~~~~R~L~r~~i~ 260 (262)
T cd00250 218 NQLTVKLEPGDLLIFDN--------RRVLHGRTAFSPRYGGDRWLKGCYVD 260 (262)
T ss_pred hEEEEEcCCCCEEEEec--------hhhhcCCCCCCCCCCCceEEEEEEec
Confidence 45678999999999998 489999988664 56888888873
No 63
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=53.13 E-value=1.8e+02 Score=26.50 Aligned_cols=87 Identities=14% Similarity=0.245 Sum_probs=52.5
Q ss_pred cceEEecCCCC------C--ccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCe
Q 026959 51 AMQILHYEHGQ------K--YEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGY 122 (230)
Q Consensus 51 ~lqv~rY~~G~------~--y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~ 122 (230)
.+++++|.+-. . -.+|.|+ -.+|+|+. | +.||==+... ++ .-+
T Consensus 179 ~lRl~~YP~~~~~~~~~~~g~~~HTD~------------g~lTlL~Q--d-~v~GLQV~~~-------~g-------~Wi 229 (335)
T PLN02156 179 CLRMNHYPEKEETPEKVEIGFGEHTDP------------QLISLLRS--N-DTAGLQICVK-------DG-------TWV 229 (335)
T ss_pred eEeEEeCCCCCCCccccccCCCCccCC------------CceEEEEe--C-CCCceEEEeC-------CC-------CEE
Confidence 48889998632 1 2457765 24777755 3 2355333321 12 258
Q ss_pred EEeCCCccEEEEe----ecCCCCCCCCCcccCCccccccceEEEEEeEE
Q 026959 123 AVKPMKGDALLFF----SLHPDASTDSTSLHGSCPVIEGEKWSATKWIH 167 (230)
Q Consensus 123 ~v~P~kG~allf~----n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~ 167 (230)
.|.|..|..||-- ..+.|| .-..++|.+......++|.+.-+++
T Consensus 230 ~Vpp~pga~VVNiGD~l~~wTNg-~~kSt~HRVv~~~~~~R~SiafF~~ 277 (335)
T PLN02156 230 DVPPDHSSFFVLVGDTLQVMTNG-RFKSVKHRVVTNTKRSRISMIYFAG 277 (335)
T ss_pred EccCCCCcEEEEhHHHHHHHhCC-eeeccceeeecCCCCCEEEEEEeec
Confidence 8999999877742 111222 2357889887655667998887774
No 64
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.15 E-value=1.8e+02 Score=26.70 Aligned_cols=120 Identities=21% Similarity=0.273 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCcceEEecCCCCCccccccCCCccccccCCCceeEEEEEeccCCCC--CcceeccCCc
Q 026959 28 DEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEK--GGETVFPNSE 105 (230)
Q Consensus 28 ~~v~~~i~~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~--GGeT~Fp~~~ 105 (230)
-+++.-|.+|+-.|--||. .-+.+-|-.|++|+.-.+|+|... -.+. ...|.+|+++.. |=...+-..
T Consensus 189 Ps~~~~ii~rlv~~~~ip~-~pd~~~iN~Ye~G~~i~ph~~~~~-------F~~P-i~slS~lSe~~m~Fg~~~~~~~~- 258 (323)
T KOG4176|consen 189 PSLFKSIIDRLVSWRVIPE-RPDQCTINFYEPGDGIPPHIDHSA-------FLDP-ISSLSFLSECTMEFGHGLLSDNI- 258 (323)
T ss_pred chHHHHHHHHhhhhccCCC-CCCeeEEEeeCCCCCCCCCCChHH-------hcCc-eEEEEeecceeEEecccccccCc-
Confidence 3577888899988888887 456788999999999999995522 1233 444556776542 211111111
Q ss_pred ccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccceEEEEEeEEeccCCCC
Q 026959 106 VSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRNFDKP 174 (230)
Q Consensus 106 ~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~~~~~~~ 174 (230)
.... +-+.+.-+.|..++-.+-. -....|+.+| .. .|.+...+.+..+....
T Consensus 259 ------~~~~----g~~s~p~~~g~~lvi~~~~-----ad~~~~~~~~-~~-~kRisitfrki~~~~~~ 310 (323)
T KOG4176|consen 259 ------GNFR----GSLSLPLRYGSVLVIRGRS-----ADVAPHCIRP-SR-NKRISITFRKIRPDPCF 310 (323)
T ss_pred ------cccc----cccccccccCeEEEeCCCc-----ccccccccCC-CC-CceEEEEEEEeccCCCC
Confidence 1111 1256667777777766422 2367788888 33 46666667877655433
No 65
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=47.75 E-value=3.6 Score=39.10 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=55.1
Q ss_pred CCceeEEEEEeccCCCCCcceecc--CCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccc
Q 026959 79 GGHRIATVLMYLSHVEKGGETVFP--NSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIE 156 (230)
Q Consensus 79 ~~~R~~T~liYLnd~~~GGeT~Fp--~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~ 156 (230)
.+-+....++|++|+.+||+..|- ++.+ ....++|+-|+.+-|-+-. ...|...+|++
T Consensus 363 ~~~~~~~a~~~~~dd~~~~el~~t~~d~~t-------------~~a~~k~~~~re~~~~~g~-------e~~~~~~~~~k 422 (471)
T KOG4459|consen 363 YTELDYFALLYLNDDFEGGELLFTEPDAKT-------------YTAISKPECGRECAFSSGA-------ENPHGVKAVTK 422 (471)
T ss_pred HHHHHhhccHhhcCccccccceecCCcccc-------------hhhccccccccchhhhccc-------cCccchhhhhh
Confidence 456678899999999999999984 3322 3467899999999997633 45689999999
Q ss_pred cceEEEEEeEEecc
Q 026959 157 GEKWSATKWIHVRN 170 (230)
Q Consensus 157 G~K~~~~~Wi~~~~ 170 (230)
|..=.+.-|....+
T Consensus 423 g~e~~~~lw~~~~~ 436 (471)
T KOG4459|consen 423 GLECAVALWPTLAP 436 (471)
T ss_pred hhHHhhhcCcccCh
Confidence 98766777775554
No 66
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=42.30 E-value=23 Score=33.38 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=49.5
Q ss_pred CCceeEEEEEeccCCCCCcceeccCCccc--ccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccc
Q 026959 79 GGHRIATVLMYLSHVEKGGETVFPNSEVS--QSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIE 156 (230)
Q Consensus 79 ~~~R~~T~liYLnd~~~GGeT~Fp~~~~~--~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~ 156 (230)
...|-+|+.+||++..+||++.|-..... +...+.|. -+...=..|.|+|..+ .+.|+..+.+.
T Consensus 279 ~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~~~~~E-----iFdn~h~p~qa~LHrg---------~~~~~a~~~~~ 344 (415)
T KOG1971|consen 279 VDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRTDDLWE-----IFDNSHDPGQAYLHRG---------YHKHGARATIV 344 (415)
T ss_pred cchhhcceeEEecccccCCeeEeeccccccccCCCchhh-----hccCcCCCccceecCc---------chhccccccCC
Confidence 36788999999999999999999764320 00000000 1112223466677654 67778888777
Q ss_pred cceEEEEEeEEec
Q 026959 157 GEKWSATKWIHVR 169 (230)
Q Consensus 157 G~K~~~~~Wi~~~ 169 (230)
|.-+....|+...
T Consensus 345 ~~~~~nv~~~~~~ 357 (415)
T KOG1971|consen 345 GQPCPNVYWFPIS 357 (415)
T ss_pred CCCCCceeeehhH
Confidence 7777778888554
No 67
>PF08686 PLAC: PLAC (protease and lacunin) domain; InterPro: IPR010909 The PLAC (protease and lacunin) domain is a six-cysteine region of about 40 residues that is present at or near the C-terminal of various enzymes and matrix proteins, including: mammalian PACE4 (paired basic amino acid cleaving enzyme 4), mammalian PCSK5 (proprotein convertase subtilisin/kexin type 5), mammalian metalloproteinases ADAMTS-2, -3, -10, -12, -14, -16, -17, and -19, and manduca Sexta matrix protein lacunin []. The PLAC domain is often associated with other domains, such as the thrombospondin type I repeat (TSP1) (IPR000884 from INTERPRO), the Kunitz proteinase inhibitor domain (IPR002223 from INTERPRO), the Ig-like domain (IPR007110 from INTERPRO), the WAP domain (IPR008197 from INTERPRO), the subtilase domain (IPR000209 from INTERPRO), or the ADAM-type metalloprotease domain (IPR001590 from INTERPRO).; GO: 0008233 peptidase activity
Probab=41.57 E-value=17 Score=21.99 Aligned_cols=32 Identities=31% Similarity=0.779 Sum_probs=26.6
Q ss_pred ccccCCc-ChHhHHhcCCCCCCccccccccCCCchhhhhcC
Q 026959 182 DCVDEDL-NCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCK 221 (230)
Q Consensus 182 ~C~d~~~-~C~~Wa~~geC~~np~~M~~~~~~~~~C~~sC~ 221 (230)
+|+|... .|..=.+.+-|. ++.|- +.|-+||.
T Consensus 1 ~C~D~~~~~C~lV~q~~lC~-~~~Y~-------~~CC~SC~ 33 (34)
T PF08686_consen 1 ECKDKPRFNCSLVVQARLCS-YKYYR-------QFCCRSCS 33 (34)
T ss_pred CCCCCCCccchhhhhcCCCC-cHHHH-------HHHHHhhC
Confidence 4899999 999999999997 55555 78999985
No 68
>PF08562 Crisp: Crisp; InterPro: IPR013871 This entry is found on Crisp proteins which contain IPR001283 from INTERPRO and has been termed the Crisp domain. It is found in the mammalian reproductive tract and the venom of reptiles, and has been shown to regulate ryanodine receptor Ca2+ signalling []. It contains 10 conserved cysteines which are all involved in disulphide bonds and is structurally related to the ion channel inhibitor toxins BgK and ShK []. ; PDB: 3MZ8_B 1XX5_B 2GIZ_A 1XTA_A 1RC9_A 2A05_A 2CQ7_A 2DDA_C 2EPF_A 2DDB_C ....
Probab=39.96 E-value=13 Score=25.14 Aligned_cols=30 Identities=27% Similarity=0.559 Sum_probs=24.5
Q ss_pred ccCCcChHhHHhcCCCCCCccccccccCCCchhhhhcC
Q 026959 184 VDEDLNCVVWAKAGECKKNPLYMVGSKSSRGYCRKSCK 221 (230)
Q Consensus 184 ~d~~~~C~~Wa~~geC~~np~~M~~~~~~~~~C~~sC~ 221 (230)
.|...+|....++--|.. .+|. .+|+.||.
T Consensus 20 ~D~~sNC~~l~~~~~C~~--~~~k------~~C~AtC~ 49 (55)
T PF08562_consen 20 EDKYSNCKSLKKQWGCQH--PYVK------SNCKATCF 49 (55)
T ss_dssp --SSTTHHHHHHHSTTTS--HHHH------HHSHHHHH
T ss_pred cccccccHHHHHhcCCCC--hHHh------cCCCCeeC
Confidence 588899999999999986 4676 89999995
No 69
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=38.20 E-value=94 Score=28.45 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=25.5
Q ss_pred CccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCC
Q 026959 62 KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNS 104 (230)
Q Consensus 62 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~ 104 (230)
...+|.|....+ ..-.+++|.-+.-..+||+|.|-+.
T Consensus 186 ~l~~HtD~~y~~------~pP~~~~L~c~~~~~~GG~T~~~d~ 222 (366)
T TIGR02409 186 GLPFHTDNPYRD------HPPGLQLLHCLESTVEGGDSLFVDG 222 (366)
T ss_pred cccccccCCccC------CCCceeeeeecccCCCCcceeeeeH
Confidence 456899875432 1223667777777889999999773
No 70
>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function.
Probab=36.55 E-value=34 Score=26.58 Aligned_cols=21 Identities=33% Similarity=0.706 Sum_probs=17.5
Q ss_pred cCeEEeCCCccEEEEeecCCC
Q 026959 120 RGYAVKPMKGDALLFFSLHPD 140 (230)
Q Consensus 120 ~~~~v~P~kG~allf~n~~~~ 140 (230)
.++.+.--.|||+|||....+
T Consensus 13 ~~l~lseiEGDAilFy~~~~~ 33 (116)
T PF10851_consen 13 LGLKLSEIEGDAILFYKYGKD 33 (116)
T ss_pred CCcEEEEecccEEEEEcCCCC
Confidence 588899999999999986543
No 71
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=33.24 E-value=30 Score=30.42 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=24.3
Q ss_pred cccccCCCccccccCCCceeEEEEEeccCCCCCcceeccC
Q 026959 64 EPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPN 103 (230)
Q Consensus 64 ~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 103 (230)
.+|.|..... ..-.+++|.-+.-+..||+|.|-+
T Consensus 95 ~wHtD~sy~~------~pp~~~~L~~~~~p~~GG~T~fad 128 (277)
T PRK09553 95 NWHTDVTFIE------TPPLGAILAAKQLPSTGGDTLWAS 128 (277)
T ss_pred CCeecccCee------CCCceeEEEEEecCCCCCccHhhh
Confidence 4888886543 223367777777788999999965
No 72
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=32.38 E-value=26 Score=33.20 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=20.1
Q ss_pred eEEe-CCCccEEEEeecCCCCCCCCCcccCCccccccceEEEEEeEEecc
Q 026959 122 YAVK-PMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWIHVRN 170 (230)
Q Consensus 122 ~~v~-P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi~~~~ 170 (230)
+.|. =++||.|+|+. ++.|++.++..|..+....+|-.-|
T Consensus 319 v~iP~v~PGD~V~WHc---------D~iH~Vd~~h~g~~~ssV~Yipa~P 359 (416)
T PF07350_consen 319 VSIPDVEPGDYVFWHC---------DLIHAVDPEHNGKGDSSVMYIPACP 359 (416)
T ss_dssp EE---B-TT-EEEEET---------T--EEE--BSS-SS---EEE--B-E
T ss_pred ccCCCCCCCCeEEEeC---------CccccccccCCCCCCCCeeEecCCC
Confidence 4444 46899999984 8999999999999988887774433
No 73
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=31.95 E-value=88 Score=26.88 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=26.2
Q ss_pred CCccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccC
Q 026959 61 QKYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPN 103 (230)
Q Consensus 61 ~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~ 103 (230)
....+|.|....+ ..--+++|.-|....+||+|.|-+
T Consensus 94 ~~l~~HtD~~y~~------~pp~~~~L~cl~~~~~GG~T~~vd 130 (262)
T cd00250 94 TLLPLHTDLAYHE------YRPGLQILHCLRNTATGGATLLVD 130 (262)
T ss_pred CCcCccccCCCCC------CCCceEEEEEeccCCCCCcceeee
Confidence 5566888886432 123456777788888899999976
No 74
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=29.06 E-value=2.5e+02 Score=25.48 Aligned_cols=85 Identities=24% Similarity=0.337 Sum_probs=52.4
Q ss_pred cceEEecCCCC------CccccccCCCccccccCCCceeEEEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEE
Q 026959 51 AMQILHYEHGQ------KYEPHFDFFRDKMNQQLGGHRIATVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAV 124 (230)
Q Consensus 51 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v 124 (230)
-+++.+|.+-- -..+|.|.. .+|+|+ .|...||--+|.. ++ .-+.|
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~------------~lTiLl--qd~~V~GLQv~~~-------dg-------~Wi~V 228 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKS------------FLTILL--QDDDVGGLQVFTK-------DG-------KWIDV 228 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcC------------ceEEEE--ccCCcCceEEEec-------CC-------eEEEC
Confidence 57778888632 145666652 255554 4446678777751 11 25899
Q ss_pred eCCCccEEEEeecC------CCCCCCCCcccCCccccccceEEEEEeE
Q 026959 125 KPMKGDALLFFSLH------PDASTDSTSLHGSCPVIEGEKWSATKWI 166 (230)
Q Consensus 125 ~P~kG~allf~n~~------~~g~~D~~~~H~g~pv~~G~K~~~~~Wi 166 (230)
+|.+|.-|+ |+. .|| .-...+|.+......+++.+.-++
T Consensus 229 ~P~p~a~vV--NiGD~l~~lSNG-~ykSv~HRV~~n~~~~R~Sia~F~ 273 (322)
T KOG0143|consen 229 PPIPGAFVV--NIGDMLQILSNG-RYKSVLHRVVVNGEKERISVAFFV 273 (322)
T ss_pred CCCCCCEEE--EcccHHhHhhCC-cccceEEEEEeCCCCceEEEEEEe
Confidence 999954444 332 233 345788999888877777776655
No 75
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=28.68 E-value=1.3e+02 Score=25.00 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=29.2
Q ss_pred cCeEEeCCCccEEEEeecCCCCCCCCCcccCCccc-cccceEEEEEeEEec
Q 026959 120 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPV-IEGEKWSATKWIHVR 169 (230)
Q Consensus 120 ~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv-~~G~K~~~~~Wi~~~ 169 (230)
..+.+.=++|++|+.+. ..+|.+.-+ ..+.-...|.|++..
T Consensus 207 ~~~~~~l~pGD~LfiP~---------gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPP---------GWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp -EEEEEEETT-EEEE-T---------T-EEEEEESTTSSCEEEEEEEEESS
T ss_pred ceeEEEECCCeEEEECC---------CCeEEEEEcCCCCeEEEEEEEeccc
Confidence 46788889999999985 789999888 344477889898653
No 76
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=26.46 E-value=92 Score=28.54 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=30.7
Q ss_pred cCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccceEEEEEeE
Q 026959 120 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGEKWSATKWI 166 (230)
Q Consensus 120 ~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~K~~~~~Wi 166 (230)
.-+.++=++|++|+|-| .+++|+...-. |.+|..--++
T Consensus 311 ~~~~~~l~pGd~vi~DN--------~rvLHgRtaf~-g~R~L~G~Y~ 348 (362)
T TIGR02410 311 NEIEFKLRPGTVLIFDN--------WRVLHSRTSFT-GYRRMCGCYL 348 (362)
T ss_pred cEEEEEcCCccEEEEee--------EEEeecCCCcC-CceEEEEEEE
Confidence 45678899999999998 48999998874 7777766655
No 77
>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone. It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm
Probab=24.99 E-value=83 Score=25.59 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=21.2
Q ss_pred CcHHHHHHHHHHHHhcCCCCCCCCcceEEecCCCCCccc
Q 026959 27 QDEIVASIEARIAAWTFLPPENGEAMQILHYEHGQKYEP 65 (230)
Q Consensus 27 ~~~v~~~i~~Ri~~~~~l~~~~~E~lqv~rY~~G~~y~~ 65 (230)
.|.+..+..+||+. .+=||+||..||.--+
T Consensus 56 ~D~~f~~F~~rl~~---------~P~QvlRY~~gG~PLw 85 (164)
T PF04194_consen 56 VDKAFLKFQKRLSR---------NPEQVLRYCRGGKPLW 85 (164)
T ss_pred cCHHHHHHHHHHhc---------CCCeEEEECCCCeEEE
Confidence 35666666666663 3689999999988433
No 78
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=23.57 E-value=46 Score=28.84 Aligned_cols=15 Identities=47% Similarity=1.034 Sum_probs=8.8
Q ss_pred CCccEEEEeecCCCC
Q 026959 127 MKGDALLFFSLHPDA 141 (230)
Q Consensus 127 ~kG~allf~n~~~~g 141 (230)
+.||+|||+|+++|-
T Consensus 167 ~dgD~vif~NFR~DR 181 (223)
T PF06415_consen 167 KDGDAVIFFNFRPDR 181 (223)
T ss_dssp -TT-EEEE--S-STT
T ss_pred cCCCEEEEEecChhH
Confidence 679999999999984
No 79
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=22.37 E-value=67 Score=17.95 Aligned_cols=16 Identities=19% Similarity=0.526 Sum_probs=10.4
Q ss_pred CcChHhHHhcCCCCCC
Q 026959 187 DLNCVVWAKAGECKKN 202 (230)
Q Consensus 187 ~~~C~~Wa~~geC~~n 202 (230)
...|..|.+.|.|...
T Consensus 3 ~~~C~~f~~~g~C~~G 18 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFG 18 (27)
T ss_dssp SSB-HHHHHTS--TTG
T ss_pred cccChhhccCCccCCC
Confidence 4679999999999853
No 80
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=22.33 E-value=1.3e+02 Score=27.57 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=31.1
Q ss_pred cCeEEeCCCccEEEEeecCCCCCCCCCcccCCcccc--ccceEEEEEeE
Q 026959 120 RGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVI--EGEKWSATKWI 166 (230)
Q Consensus 120 ~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~--~G~K~~~~~Wi 166 (230)
..+.++=++|++|+|.| .+++|+..+-. .|.+++.--++
T Consensus 312 ~~~~~~l~pGd~vi~DN--------~rvlH~R~af~~~~~~R~L~g~Y~ 352 (366)
T TIGR02409 312 FKFTFKLEPGDLVLFDN--------TRLLHARDAFSNPEGKRHLQGCYA 352 (366)
T ss_pred cEEEEEcCCCcEEEEec--------eEEeecCCCcCCCCCceEEEEEEE
Confidence 45788999999999998 48999998875 57777766555
No 81
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=21.87 E-value=1.3e+02 Score=21.45 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=28.7
Q ss_pred EEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCccccccc
Q 026959 87 LMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEGE 158 (230)
Q Consensus 87 liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G~ 158 (230)
+.-++|...|+...|.... ..+.|.-..|....|.| .-.|.++|+..|.
T Consensus 4 v~~~~~l~~g~~~~~~~~g--------------~~~~v~r~~~~~~a~~~---------~CpH~g~~L~~g~ 52 (98)
T cd03528 4 VCAVDELPEGEPKRVDVGG--------------RPIAVYRVDGEFYATDD---------LCTHGDASLSEGY 52 (98)
T ss_pred EEEhhhcCCCCEEEEEECC--------------eEEEEEEECCEEEEECC---------cCCCCCCCCCCCe
Confidence 4446666666655554321 13444444565555554 7899999998763
No 82
>PTZ00413 lipoate synthase; Provisional
Probab=21.84 E-value=35 Score=32.10 Aligned_cols=22 Identities=23% Similarity=0.606 Sum_probs=17.1
Q ss_pred CccccccccCCCchhhhhcCcCCCCC
Q 026959 202 NPLYMVGSKSSRGYCRKSCKVCKPSS 227 (230)
Q Consensus 202 np~~M~~~~~~~~~C~~sC~~C~~~~ 227 (230)
...||+. ...|...|++|..+.
T Consensus 149 tATfmil----G~~CTr~C~FCaqst 170 (398)
T PTZ00413 149 TATIMVM----GDHCTRGCRFCSVKT 170 (398)
T ss_pred eeEeeec----CCCCCCCCCCCCCCC
Confidence 4578873 379999999998754
No 83
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=21.68 E-value=1.6e+02 Score=21.75 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=31.1
Q ss_pred EEEEeccCCCCCcceeccCCcccccCCCCcchhcCcCeEEeCCCccEEEEeecCCCCCCCCCcccCCcccccc
Q 026959 85 TVLMYLSHVEKGGETVFPNSEVSQSRDGNWSECARRGYAVKPMKGDALLFFSLHPDASTDSTSLHGSCPVIEG 157 (230)
Q Consensus 85 T~liYLnd~~~GGeT~Fp~~~~~~~~~~~~~~C~~~~~~v~P~kG~allf~n~~~~g~~D~~~~H~g~pv~~G 157 (230)
+.+.-++|..+|+...|.... .+.|.-..|....|.| .-.|.++|+..|
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~~---------------~i~v~~~~g~~~A~~~---------~CpH~g~~L~~G 52 (106)
T PRK09965 4 IYACPVADLPEGEALRVDTSP---------------VIALFNVGGEFYAIDD---------RCSHGNASLSEG 52 (106)
T ss_pred EEeeeHHHcCCCCeEEEeCCC---------------eEEEEEECCEEEEEeC---------cCCCCCCCCCce
Confidence 345667788888776664311 3444445666555554 788999999765
No 84
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=21.57 E-value=40 Score=20.50 Aligned_cols=8 Identities=50% Similarity=1.144 Sum_probs=5.7
Q ss_pred chhhhhcC
Q 026959 214 GYCRKSCK 221 (230)
Q Consensus 214 ~~C~~sC~ 221 (230)
..|+|||.
T Consensus 18 eqcqkscs 25 (40)
T PF11403_consen 18 EQCQKSCS 25 (40)
T ss_dssp TTSTTS-S
T ss_pred HHHhhcCC
Confidence 67888886
No 85
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=21.46 E-value=1.4e+02 Score=28.01 Aligned_cols=40 Identities=28% Similarity=0.456 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcceEEecC-CCCCccccccCCCc
Q 026959 29 EIVASIEARIAAWTFLPPENGEAMQILHYE-HGQKYEPHFDFFRD 72 (230)
Q Consensus 29 ~v~~~i~~Ri~~~~~l~~~~~E~lqv~rY~-~G~~y~~H~D~~~~ 72 (230)
+-++++.+ .+.+||--...++.|. |. +||-|++|+|..+.
T Consensus 101 p~v~~l~~---~FrflP~wr~ddiMIS-~a~~GGgvg~H~D~YDV 141 (383)
T COG2850 101 PEVAALME---PFRFLPDWRIDDIMIS-FAAPGGGVGPHFDQYDV 141 (383)
T ss_pred HHHHHHHH---HhccCccccccceEEE-EecCCCccCccccchhe
Confidence 34444444 5557887667778777 65 79999999999754
Done!