BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026960
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SHE8|PSAF_ARATH Photosystem I reaction center subunit III, chloroplastic
OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1
Length = 221
Score = 357 bits (916), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 177/231 (76%), Positives = 195/231 (84%), Gaps = 11/231 (4%)
Query: 1 MSLTIPTNLSKPLLKPRSNSQLSHA-KLSKQMITCSSSAGSEETSSSSGKAAKPLQAFSA 59
MSLTIP NL +L PRSN L+ + S CS S T S ++AFSA
Sbjct: 1 MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQS-------MKAFSA 50
Query: 60 ALALSSILLSAPQPAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIK 119
A+ALSSILLSAP PAVADISGLTPCK+SKQFAKREKQQ+KKLESSLKLYAP+SAPALA+
Sbjct: 51 AVALSSILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALN 110
Query: 120 ATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRS 179
A +EKTKRRFDNYGKYGLLCGSDGLPHLIV+GDQRHWGEFITPG+LFLYIAGWIGWVGRS
Sbjct: 111 AQIEKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRS 170
Query: 180 YLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKDV 230
YLIAISGEKKPAMKEIIIDVPLASR++FRGF WPVAAYREF+NG+L+ KDV
Sbjct: 171 YLIAISGEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLIAKDV 221
>sp|P46486|PSAF_FLATR Photosystem I reaction center subunit III, chloroplastic
OS=Flaveria trinervia GN=PSAF PE=2 SV=1
Length = 232
Score = 310 bits (795), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 168/231 (72%), Positives = 189/231 (81%), Gaps = 8/231 (3%)
Query: 1 MSLTIPTNLSKPLL--KPRSNSQLSHAKLSKQMITCSSSAGSEETSSSSGKAAKPLQAFS 58
MS TI T+ +PL +S+ S +K++ I CS GS + ++ L+A S
Sbjct: 1 MSFTISTSFLQPLEISNLKSSPITSKSKVTSTSIVCS---GSTDEKINNADGKSSLKALS 57
Query: 59 AALALSSILLSAPQPAV---ADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPA 115
AALALSSIL+S+ PA+ ADISGLTPCKESKQFAKREKQ LKKLESSLKLYAPDSAPA
Sbjct: 58 AALALSSILVSSTVPALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPA 117
Query: 116 LAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGW 175
LAIKATMEKTKRRFDNYGK GLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGW
Sbjct: 118 LAIKATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGW 177
Query: 176 VGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELV 226
VGRSYLIAI EKKP KEIIIDVPLA++L+FRGFSWPVAAYRE++NGEL+
Sbjct: 178 VGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228
>sp|P12355|PSAF_SPIOL Photosystem I reaction center subunit III, chloroplastic
OS=Spinacia oleracea GN=PSAF PE=1 SV=1
Length = 231
Score = 307 bits (787), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 163/229 (71%), Positives = 176/229 (76%), Gaps = 5/229 (2%)
Query: 1 MSLTIPTNLSKPL-LKPRSNSQLSHAKLSKQMITCSSSAGSEETSSSS-GKAAKPLQAFS 58
MS TIPTNL KPL KP+ S S A SK I C ++ K A
Sbjct: 1 MSFTIPTNLYKPLATKPKHLSSSSFAPRSK--IVCQQENDQQQPKKLELAKVGANAAAAL 58
Query: 59 AALALSSILLS-APQPAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALA 117
A ++ S AP A+ADI+GLTPCKESKQFAKREKQ LKKL++SLKLYA DSAPALA
Sbjct: 59 ALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALA 118
Query: 118 IKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVG 177
IKATMEKTK+RFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVG
Sbjct: 119 IKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVG 178
Query: 178 RSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELV 226
RSYLIAI EKKP KEIIIDVPLAS L+FRGFSWPVAAYRE +NGELV
Sbjct: 179 RSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227
>sp|P13192|PSAF_HORVU Photosystem I reaction center subunit III, chloroplastic OS=Hordeum
vulgare GN=PSAF PE=1 SV=2
Length = 235
Score = 287 bits (735), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 146/202 (72%), Positives = 174/202 (86%), Gaps = 4/202 (1%)
Query: 32 ITCSSSAGSEETSSSSGKAAKPLQAFSAALALSSILLSAPQPAVA----DISGLTPCKES 87
++CS+S+G S+++ + ++ FSAALALSS+LLS+ + DI+GLTPCKES
Sbjct: 29 VSCSASSGDNNNSTATPSLSASIKTFSAALALSSVLLSSAATSPPPAAADIAGLTPCKES 88
Query: 88 KQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHL 147
K FAKREKQ +KKL SSLK YAPDSAPALAI+AT++KTKRRF+NYGK+GLLCGSDGLPHL
Sbjct: 89 KAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHL 148
Query: 148 IVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVF 207
IVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+SGEKKPAM+EIIIDV LA+R++
Sbjct: 149 IVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIP 208
Query: 208 RGFSWPVAAYREFVNGELVVKD 229
RGF WPVAAYRE +NG+LVV D
Sbjct: 209 RGFIWPVAAYRELINGDLVVDD 230
>sp|P12356|PSAF_CHLRE Photosystem I reaction center subunit III, chloroplastic
OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1
Length = 227
Score = 196 bits (499), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 96/163 (58%), Positives = 119/163 (73%), Gaps = 4/163 (2%)
Query: 71 PQPAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFD 130
P A+ADI+GLTPC ESK +AK EK++LK LE LK Y DSAPA+A+KATME+TK RF
Sbjct: 57 PSAAMADIAGLTPCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFA 116
Query: 131 NYGKYGLLCGSDGLPHLI----VSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISG 186
NY K GLLCG+DGLPHLI ++ H GE P FLY+AG+IG+VGR YLIA+ G
Sbjct: 117 NYAKAGLLCGNDGLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKG 176
Query: 187 EKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
E KP KEIIIDVPLA++L ++G WP+AA +E G L+ K+
Sbjct: 177 EAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEKE 219
>sp|Q1XDU4|PSAF_PORYE Photosystem I reaction center subunit III OS=Porphyra yezoensis
GN=psaF PE=3 SV=1
Length = 181
Score = 189 bits (480), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 119/167 (71%)
Query: 63 LSSILLSAPQPAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATM 122
L+ +++S P A A+++GL PCK+S F KR +KKL++ L Y D+ PALA+ +
Sbjct: 7 LALLIMSNPIIANAEVAGLVPCKDSAAFNKRMVNSVKKLQARLAKYDADTPPALALNKQI 66
Query: 123 EKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLI 182
EKTK RF YG+ GLLCG+DGLPHLI G G+F+ PGLLFLYI GWIGWVGR YL+
Sbjct: 67 EKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLL 126
Query: 183 AISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
+++ KP KEII+DVPLA + + GF+WP+AA++EF +G+L+ +
Sbjct: 127 SVAKTSKPTEKEIILDVPLAIKFMSSGFAWPLAAWQEFSSGQLIASN 173
>sp|O78457|PSAF_GUITH Photosystem I reaction center subunit III OS=Guillardia theta
GN=psaF PE=3 SV=1
Length = 183
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 109/159 (68%)
Query: 71 PQPAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFD 130
P + AD++GL PCK SK+F +R +KKLES L Y P++ P LA++ + KTK RF
Sbjct: 17 PVASHADVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPPYLALETQINKTKNRFT 76
Query: 131 NYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKP 190
YG GLLCG+DGLPHLI G H GEF+ PGL FLYIAGWIGWVGR+Y+ S KP
Sbjct: 77 QYGNAGLLCGTDGLPHLIADGRWSHAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKP 136
Query: 191 AMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
KEIIIDVP+A + G+ WP AA++EF +G L+ K+
Sbjct: 137 TEKEIIIDVPVALSFISTGYIWPFAAFKEFTSGNLIAKE 175
>sp|P51193|PSAF_PORPU Photosystem I reaction center subunit III OS=Porphyra purpurea
GN=psaF PE=3 SV=1
Length = 185
Score = 186 bits (473), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 85/164 (51%), Positives = 117/164 (71%)
Query: 63 LSSILLSAPQPAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATM 122
L+ +L+S P A+++GL PCK+S F KR +KKL++ L Y ++ PALA+ +
Sbjct: 11 LAVLLVSNPIVVNAEVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPPALALNKQI 70
Query: 123 EKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLI 182
EKTK RF YG+ GLLCG+DGLPHLI G G+F+ PGLLFLYI GWIGWVGR YL+
Sbjct: 71 EKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLL 130
Query: 183 AISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELV 226
+++ KP KEII+DVPLA + + GF+WP+AA++EF +G+L+
Sbjct: 131 SVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSSGQLI 174
>sp|P48115|PSAF_CYAPA Photosystem I reaction center subunit III OS=Cyanophora paradoxa
GN=psaF PE=3 SV=1
Length = 186
Score = 184 bits (467), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 57 FSAALALSSILLSAP-QPAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPA 115
F LS ++L+ +P AD++GL PC +S F +R K ++LE+ LK Y P SAPA
Sbjct: 5 FLLMFCLSGLILTTDIRPVRADVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAPA 64
Query: 116 LAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGW 175
A++ ++KT++RFD Y GLLCG+DGLPHLI G H GEF PGLLFLYIAG+IGW
Sbjct: 65 EALQKQIDKTQQRFDKYRNSGLLCGADGLPHLITDGRWSHAGEFTIPGLLFLYIAGFIGW 124
Query: 176 VGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
GRSYL A++ KEIIID+P+A + V +GF WP+AA +EF +G+L +D
Sbjct: 125 SGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFSSGKLTARD 178
>sp|P49483|PSAF_ODOSI Photosystem I reaction center subunit III OS=Odontella sinensis
GN=psaF PE=3 SV=1
Length = 185
Score = 183 bits (465), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 88/177 (49%), Positives = 120/177 (67%), Gaps = 1/177 (0%)
Query: 54 LQAFSAALALSSILLSA-PQPAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDS 112
++ F+ + LS++L+S P A+ADI GLT C ES F KR K +KKLE + Y S
Sbjct: 1 MKRFNFLILLSTVLISLFPNRALADIGGLTKCSESPAFEKRLKASVKKLEQRMGKYEAGS 60
Query: 113 APALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGW 172
PALA++ +E+T+ RFD Y + LLCG+DGLPHLI G H EFI PG F+YI+GW
Sbjct: 61 PPALALQQQIERTQARFDKYSRSELLCGTDGLPHLIADGRWSHAAEFILPGFGFIYISGW 120
Query: 173 IGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
IGWVGR YL A+S K P EIII+VPLA +++ G+ WP++A++EF++ +LV D
Sbjct: 121 IGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGYIWPISAWQEFISNDLVALD 177
>sp|Q6B948|PSAF_GRATL Photosystem I reaction center subunit III OS=Gracilaria
tenuistipitata var. liui GN=psaF PE=3 SV=1
Length = 187
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 106/156 (67%)
Query: 74 AVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYG 133
A + +GLT C+ES F KR +KKLE+ L Y ++ PA+A++ + KTK RF+ Y
Sbjct: 24 AEVETAGLTKCQESPAFTKRLNNSVKKLETRLAKYDANTPPAIALQTQIIKTKIRFNKYA 83
Query: 134 KYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMK 193
K G+LCG+DGLPHLI G H GEF+ PG+LFLYI GWIGWVGR YL IS KP K
Sbjct: 84 KSGILCGTDGLPHLITDGRWNHAGEFMIPGVLFLYITGWIGWVGRGYLRDISQTTKPTEK 143
Query: 194 EIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
EII+DVPLA + GF+WP+AA +E +GELV +
Sbjct: 144 EIILDVPLALKYCLSGFTWPLAAIKELTSGELVADN 179
>sp|Q9TLW6|PSAF_CYACA Photosystem I reaction center subunit III OS=Cyanidium caldarium
GN=psaF PE=3 SV=1
Length = 187
Score = 170 bits (431), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
Query: 51 AKPLQAFSAALALSSILLSAPQPAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAP 110
+K LQ F L +++ LL S LTPC+ S QF R +KKLE+ L Y
Sbjct: 3 SKVLQRF--VLCITASLLFWNLNIATHASTLTPCENSAQFQARLNNNIKKLENKLTYYKQ 60
Query: 111 DSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIA 170
+S +IK +EKTK RFD Y K LLCG DGLPHLI GD +H GEF P +LF+YIA
Sbjct: 61 NSQEYTSIKQQIEKTKIRFDKYAKSSLLCGEDGLPHLITDGDWQHSGEFFIPSVLFIYIA 120
Query: 171 GWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
GWIGW G+ YL KP EIIID+P A + +F GF+WP+ A +EF NG L+ +
Sbjct: 121 GWIGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGFAWPILALKEFKNGSLLASN 179
>sp|P31083|PSAF_SYNP6 Photosystem I reaction center subunit III OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaF
PE=1 SV=2
Length = 159
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 105/172 (61%), Gaps = 26/172 (15%)
Query: 57 FSAALALSSILLSAPQPAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPAL 116
F+ LA L APQ A AD++GLTPC ES +F +R +
Sbjct: 5 FAVVLAACLWLGFAPQ-ASADVAGLTPCSESPRFIQRAE--------------------- 42
Query: 117 AIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWV 176
A + K RF+NY + LCG+DGLPHLIV G H G+FI P LLFLYIAGWIGWV
Sbjct: 43 --AAATPQAKARFENYSQ--ALCGADGLPHLIVDGRLDHAGDFIIPSLLFLYIAGWIGWV 98
Query: 177 GRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVK 228
GRSYL AI +K A KEI+IDVPLA + GF+WP+AA++EF +G+L+ K
Sbjct: 99 GRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLLAK 150
>sp|P0A401|PSAF_THEEB Photosystem I reaction center subunit III OS=Thermosynechococcus
elongatus (strain BP-1) GN=psaF PE=1 SV=1
Length = 164
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 94/156 (60%), Gaps = 20/156 (12%)
Query: 74 AVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYG 133
A AD++GL PCK+S F KR +A A+ A ++RF+ Y
Sbjct: 21 ASADVAGLVPCKDSPAFQKR------------------AAAAVNTTADPASGQKRFERYS 62
Query: 134 KYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMK 193
+ LCG DGLPHL+V G G+F+ P +LFLYIAGWIGWVGR+YLIA+ + K
Sbjct: 63 QA--LCGEDGLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEK 120
Query: 194 EIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
EIIIDVPLA + + GF+WP+AA +E +GEL KD
Sbjct: 121 EIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKD 156
>sp|P0A402|PSAF_SYNEL Photosystem I reaction center subunit III OS=Synechococcus
elongatus GN=psaF PE=1 SV=1
Length = 164
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 94/156 (60%), Gaps = 20/156 (12%)
Query: 74 AVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYG 133
A AD++GL PCK+S F KR +A A+ A ++RF+ Y
Sbjct: 21 ASADVAGLVPCKDSPAFQKR------------------AAAAVNTTADPASGQKRFERYS 62
Query: 134 KYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMK 193
+ LCG DGLPHL+V G G+F+ P +LFLYIAGWIGWVGR+YLIA+ + K
Sbjct: 63 QA--LCGEDGLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEK 120
Query: 194 EIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
EIIIDVPLA + + GF+WP+AA +E +GEL KD
Sbjct: 121 EIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKD 156
>sp|P29256|PSAF_SYNY3 Photosystem I reaction center subunit III OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=psaF PE=1 SV=1
Length = 165
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 91/160 (56%), Gaps = 20/160 (12%)
Query: 70 APQPAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRF 129
AP + D + LTPC E+ + + K L P+S K R
Sbjct: 18 APSASADDFANLTPCSENPAYLAKSKNFLNTTND------PNSG------------KIRA 59
Query: 130 DNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 189
+ Y LCG +G PHLIV G H G+F+ P +LFLYIAGWIGWVGRSYLI I K
Sbjct: 60 ERYAS--ALCGPEGYPHLIVDGRFTHAGDFLIPSILFLYIAGWIGWVGRSYLIEIRESKN 117
Query: 190 PAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
P M+E++I+VPLA + + GF WP+AA E+ +G+LV+KD
Sbjct: 118 PEMQEVVINVPLAIKKMLGGFLWPLAAVGEYTSGKLVMKD 157
>sp|O31127|PSAF_MASLA Photosystem I reaction center subunit III OS=Mastigocladus
laminosus GN=psaF PE=1 SV=1
Length = 165
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 96/174 (55%), Gaps = 22/174 (12%)
Query: 57 FSAALALSSILLSAPQPAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPAL 116
F+ LA+ AP PA A + L PC ES F +R + A
Sbjct: 5 FALILAIFLWFHFAP-PAQALGADLVPCSESPAFQQRAQV------------------AR 45
Query: 117 AIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWV 176
A E K+RF+ Y + LCG +GLPHLIV G H G+F+ P +LFLYIAGWIGWV
Sbjct: 46 NTTADPESGKKRFERYSQ--ALCGPEGLPHLIVDGRLDHAGDFLIPSILFLYIAGWIGWV 103
Query: 177 GRSYLIAISGE-KKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
GR+YL I + KEI I++P+A ++ GF+WP AA +EF++GEL KD
Sbjct: 104 GRAYLQTIKKQGSNVEQKEIQIELPIALPIMLSGFAWPAAAIKEFLSGELTAKD 157
>sp|P31091|PSAF_ANAVT Photosystem I reaction center subunit III OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=psaF PE=3 SV=2
Length = 164
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 85/157 (54%), Gaps = 20/157 (12%)
Query: 73 PAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNY 132
PA A + LTPC E+ F K A A + ++RF+ Y
Sbjct: 20 PAKALGADLTPCAENPAFQALAKN------------------ARNTTADPQSGQKRFERY 61
Query: 133 GKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAM 192
+ LCG +G PHLIV G G+F+ P +LFLYIAGWIGWVGR+YL AI +
Sbjct: 62 SQA--LCGPEGYPHLIVDGRLDRAGDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQ 119
Query: 193 KEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
KEI +D+ LA ++ GF+WP AA +E ++GEL KD
Sbjct: 120 KEIQLDLGLALPIIATGFAWPAAAVKELLSGELTAKD 156
>sp|P58564|PSAF_NOSS1 Photosystem I reaction center subunit III OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=psaF PE=3 SV=1
Length = 164
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 85/157 (54%), Gaps = 20/157 (12%)
Query: 73 PAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNY 132
PA A + LTPC E+ F K A A + ++RF+ Y
Sbjct: 20 PAKALGADLTPCAENPAFQALAKN------------------ARNTTADPQSGQKRFERY 61
Query: 133 GKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAM 192
+ LCG +G PHLIV G G+F+ P +LFLYIAGWIGWVGR+YL AI +
Sbjct: 62 SQA--LCGPEGYPHLIVDGRLDRAGDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQ 119
Query: 193 KEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
KEI +D+ +A ++ GF+WP AA +E ++GEL KD
Sbjct: 120 KEIQLDLGIALPIIATGFAWPAAAVKELLSGELTAKD 156
>sp|Q9X7I4|PSAF_PROMA Photosystem I reaction center subunit III OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=psaF PE=1
SV=1
Length = 183
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 80/160 (50%), Gaps = 34/160 (21%)
Query: 79 SGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLL 138
S LT C E+ +F +R Q AT K RF+ Y K
Sbjct: 40 SALTTCSENTRFNERASQ-----------------------ATTPKDIARFERYSKAS-- 74
Query: 139 CGSDGLPHLIVSG---------DQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK 189
CG DGLPHL+++ ++ H G+ + PG +F+Y+AG IGW GR YL A K
Sbjct: 75 CGDDGLPHLVIAATIEPWGALANRHHEGDILIPGHIFIYVAGIIGWSGREYLRASKKTKN 134
Query: 190 PAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229
PA EIIID LA + + +G +WPV A ++ +G+L KD
Sbjct: 135 PAENEIIIDFALARQCLIKGAAWPVEANKQGRSGDLREKD 174
>sp|Q7NH05|PSAF_GLOVI Photosystem I reaction center subunit III OS=Gloeobacter violaceus
(strain PCC 7421) GN=psaF PE=1 SV=1
Length = 181
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 79/145 (54%), Gaps = 10/145 (6%)
Query: 83 PCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSD 142
P K K ++ + ++LE++ K A D P +A TK++F+ Y CG D
Sbjct: 37 PLKLCKDVPAYQELKTQRLEAAQKAQA-DGKPVTFNEAG---TKQKFERYDT--AYCGQD 90
Query: 143 GLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLA 202
G PHLI SG G+F+ P +LFL+IAG +GW GR YL E K EIIID+P A
Sbjct: 91 GYPHLITSGQLDRAGDFLIPSVLFLWIAGALGWAGRLYL----AESKGPEDEIIIDLPKA 146
Query: 203 SRLVFRGFSWPVAAYREFVNGELVV 227
+ + G WPV A E ++G++ V
Sbjct: 147 IKCLLLGLIWPVQAIPELISGKIRV 171
>sp|P42048|PSAF_CUCSA Photosystem I reaction center subunit III (Fragment) OS=Cucumis
sativus GN=PSAF PE=1 SV=1
Length = 26
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/26 (88%), Positives = 23/26 (88%)
Query: 77 DISGLTPCKESKQFAKREKQQLKKLE 102
DISGLTPCKESKQF KREKQQ K LE
Sbjct: 1 DISGLTPCKESKQFXKREKQQXKXLE 26
>sp|P20119|PSAF_PEA Photosystem I reaction center subunit III (Fragment) OS=Pisum
sativum GN=PSAF PE=1 SV=1
Length = 20
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/19 (100%), Positives = 19/19 (100%)
Query: 78 ISGLTPCKESKQFAKREKQ 96
ISGLTPCKESKQFAKREKQ
Sbjct: 2 ISGLTPCKESKQFAKREKQ 20
>sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3
PE=1 SV=2
Length = 1580
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 56 AFSAALALSSILLSAPQPAVADISGLTPCKESKQFAKREKQQLKKLESSLK----LYAPD 111
+A+ + ++S+P A +S L +SK F E++ ++K +++K LY P
Sbjct: 200 GLTASAVIRKGIVSSPSNYAAQVSELERLMDSKIFNPEEREGVEKFATTVKEGPILYNPS 259
Query: 112 SAPALAIKATMEKTKRRFD 130
+ +L +K +E + +FD
Sbjct: 260 PSCSLELKEKLETSHLKFD 278
>sp|A4SJR5|IF2_AERS4 Translation initiation factor IF-2 OS=Aeromonas salmonicida (strain
A449) GN=infB PE=3 SV=1
Length = 898
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 40 SEETSSSSGKAAKPLQAFSAALALSSILLSAPQPAVADISGLTPCKESKQFAKREKQQLK 99
+EE + + A+ A + S APQPA A S T +E+++ AKRE ++LK
Sbjct: 136 AEEKARREAEQARREAEEKARIEAQSKARQAPQPAKAASS--TAQQEAEKMAKREAEELK 193
Query: 100 KLESSLKLYAPDSAPALAIKATME 123
+ + L A LA K E
Sbjct: 194 RQQEQTAL---QKAEELAAKKAEE 214
>sp|Q9TM31|ATPI_CYACA ATP synthase subunit a, chloroplastic OS=Cyanidium caldarium
GN=atpI PE=3 SV=1
Length = 239
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 121 TMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIG 174
M+K R F N+ +Y D + I + W FI+ LF++++ W+G
Sbjct: 51 NMQKEPRGFQNFLEYVFEFLQDISKNQIEEKYYKSWVPFISTLFLFIFVSNWLG 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,771,506
Number of Sequences: 539616
Number of extensions: 3175505
Number of successful extensions: 11550
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 11321
Number of HSP's gapped (non-prelim): 196
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)