Query 026960
Match_columns 230
No_of_seqs 98 out of 100
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 04:08:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_F Photosystem I reaction 100.0 5E-105 2E-109 695.6 -1.1 226 1-230 1-231 (231)
2 3lw5_F Photosystem I reaction 100.0 3.4E-95 1.2E-99 604.0 2.9 154 77-230 1-154 (154)
3 1jb0_F Photosystem 1 reaction 100.0 7.8E-89 2.7E-93 570.8 4.4 157 54-230 1-157 (164)
4 1qzv_F Plant photosystem I: su 100.0 3.8E-39 1.3E-43 266.1 5.2 78 79-156 3-80 (154)
5 1m4y_A ATP-dependent protease 46.0 10 0.00036 29.4 2.2 58 79-149 47-105 (171)
6 2ra9_A Uncharacterized protein 39.6 10 0.00035 31.2 1.3 33 136-168 18-50 (150)
7 2cqq_A RSGI RUH-037, DNAJ homo 37.2 68 0.0023 22.8 5.2 40 96-135 14-58 (72)
8 2a8e_A Hypothetical protein YK 33.4 28 0.00094 30.4 3.1 60 82-141 105-173 (220)
9 1ilo_A Conserved hypothetical 30.7 30 0.001 21.8 2.2 17 141-157 48-64 (77)
10 3mk7_C Cytochrome C oxidase, C 23.6 2.4E+02 0.0082 24.0 7.3 59 74-132 78-142 (311)
11 3swf_A CGMP-gated cation chann 22.1 45 0.0015 24.8 2.0 24 87-110 30-53 (74)
12 4dvc_A Thiol:disulfide interch 21.7 79 0.0027 23.2 3.4 29 118-153 132-160 (184)
13 3ktb_A Arsenical resistance op 21.5 21 0.00072 27.8 0.2 27 126-159 65-91 (106)
14 1nho_A Probable thioredoxin; b 20.7 41 0.0014 21.3 1.4 18 140-157 52-69 (85)
15 2b78_A Hypothetical protein SM 20.0 26 0.00089 30.8 0.5 17 140-160 102-119 (385)
No 1
>2wsc_F Photosystem I reaction center subunit III, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_F* 2wsf_F*
Probab=100.00 E-value=4.6e-105 Score=695.55 Aligned_cols=226 Identities=71% Similarity=1.108 Sum_probs=153.1
Q ss_pred CccccCCCCCCCCCCCCCcCcccccccccceeeeccCCCCCCCccCcccCCchHHH-HHHHHHH----HHHhhhCCCccc
Q 026960 1 MSLTIPTNLSKPLLKPRSNSQLSHAKLSKQMITCSSSAGSEETSSSSGKAAKPLQA-FSAALAL----SSILLSAPQPAV 75 (230)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mrr-~~A~ll~----~~l~~~~~~~A~ 75 (230)
|++++|+|+++| ++|++.....+++.+|.+++||++..+.+. .++....|++ |.+++++ .++|++++++|.
T Consensus 1 ~s~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~csa~~~~~~~---~~~~~~~~~~~~~aalal~~~~~~~~~~~~~~a~ 76 (231)
T 2wsc_F 1 MSFTIPTNLYKP-LATKPKHLSSSSFAPRSKIVCQQENDQQQP---KKLELAKVGANAAAALALSSVLLSSWSVAPDAAM 76 (231)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccchhhcCC-CCccccccccccCCcceeEEeecccccccc---cccchhhHHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence 899999999999 888877222234567889999999844443 3555667888 5555543 356677899999
Q ss_pred cccCCCccCccCHHHHHHHHHHHHHHHHhhhccCCCChhHHHHhhcHHHHHHHHHhcccCcCccCCCCCceeeecCCCcc
Q 026960 76 ADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRH 155 (230)
Q Consensus 76 AdvagLtPCseS~aF~kR~k~~vkkLe~rlkkY~~~S~palAl~a~i~~tk~RFe~Y~~~~lLCG~DGLPHLIvdG~~~H 155 (230)
||++|||||+|||+||||++++|||||+|||||++||||||||++||++||+||||||++|+|||+|||||||+||||+|
T Consensus 77 Ad~agLtPCses~aF~kR~k~~vkkle~rlkkY~~~s~palal~~~i~~tk~RFe~Y~~~g~LCG~DGLPHLIvdG~~~H 156 (231)
T 2wsc_F 77 ADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRH 156 (231)
T ss_dssp -CCSSCCCSSSCHHHHHHHHTTGGGSCCCSCCSCSSCSSCCSTTTTSHHHHSCCSCSCCCCCCCCSSCCCCBCCSSSSSC
T ss_pred ccccCCccCccCHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHhhHHHHHHHHHHhcccccccCCCCCceEecCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhchhHHHhhhhccccchhHHHHHHhCCCCCccceeeeehhHHHHHHHccccchHHHHhhhhcCeeeccCC
Q 026960 156 WGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKDV 230 (230)
Q Consensus 156 aGeF~IPgllFLYIAGwIGW~GRsYL~av~~~k~p~ekEIIIDVPLAlk~m~~Gf~WPlaA~~E~~sG~L~a~d~ 230 (230)
+|||+|||++|||||||||||||+|||+++++|||+|||||||||||++||++||+||++||||++||+|+++|.
T Consensus 157 aGeF~IPgllFLYIAGwIGW~GR~YL~av~~~k~p~ekEIIIDVPlAlk~m~~Gf~WPlaA~~E~~sG~L~a~d~ 231 (231)
T 2wsc_F 157 WGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELVDNNF 231 (231)
T ss_dssp CTTTSHHHHHHHHHTTTTTTTTTTTTTTCSCSSCCSSTTTSCSSGGGTTSGGGGTTCSSTHHHHTTSSSSCGGGC
T ss_pred eeeeeechhhHHHHhcccccccHHHHHHhccCCCcccceeEeccHHHHHHHHhhcccHHHHHHHhhcCceecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984
No 2
>3lw5_F Photosystem I reaction center subunit III, chloro; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_F*
Probab=100.00 E-value=3.4e-95 Score=604.03 Aligned_cols=154 Identities=88% Similarity=1.431 Sum_probs=152.9
Q ss_pred ccCCCccCccCHHHHHHHHHHHHHHHHhhhccCCCChhHHHHhhcHHHHHHHHHhcccCcCccCCCCCceeeecCCCccc
Q 026960 77 DISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHW 156 (230)
Q Consensus 77 dvagLtPCseS~aF~kR~k~~vkkLe~rlkkY~~~S~palAl~a~i~~tk~RFe~Y~~~~lLCG~DGLPHLIvdG~~~Ha 156 (230)
|++|||||+|||+||||++++|||||+|||||+|||||||||++|+++||+||||||++|+|||+|||||||+||||+|+
T Consensus 1 d~agLtPC~eS~aF~kr~~~~~k~le~rlk~Y~~~s~palal~~~~~~tk~RFe~Y~~~~lLCG~DGLPHLI~dG~~~ha 80 (154)
T 3lw5_F 1 DIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHW 80 (154)
T ss_dssp CCSSCCCSSSCHHHHHHHHHHHHHHHCSCCCSCSSCSSCCSTTTTSHHHHSCCSCSCCCCCCCCSSSCCCBCCCSSSSCS
T ss_pred CCCCCccCccCHHHHHHHHHHHHHHHHHHhhcCCCCchHHhhhcchHHHHHHHHHhcccccccCCCCCceEeccCCcccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhchhHHHhhhhccccchhHHHHHHhCCCCCccceeeeehhHHHHHHHccccchHHHHhhhhcCeeeccCC
Q 026960 157 GEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKDV 230 (230)
Q Consensus 157 GeF~IPgllFLYIAGwIGW~GRsYL~av~~~k~p~ekEIIIDVPLAlk~m~~Gf~WPlaA~~E~~sG~L~a~d~ 230 (230)
|||+|||++|||||||||||||+|||+++++|||+|||||||||||++||++||+||++||+|++||+|+++||
T Consensus 81 Gef~iPg~lFLYIAGwIGW~GRsYL~a~~~~k~p~ekEIiIDvpLA~~~m~~g~~WPlaA~~E~~sG~L~~~d~ 154 (154)
T 3lw5_F 81 GEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELVDNNF 154 (154)
T ss_dssp TTTSHHHHHHHHHTTTTTTTTTTTTTTCSCSSCCSSGGGSCSSGGGGGGGGGTTTCSSTHHHHTTSSSSCTTTC
T ss_pred chhhhhhHHHHHHhhhhhhhhHHHHHHHhccCCcccceeEeehHHHHHHHHHhhhhHHHHHHHHhcCceecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.16.1 PDB: 3pcq_F*
Probab=100.00 E-value=7.8e-89 Score=570.83 Aligned_cols=157 Identities=46% Similarity=0.907 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHhhhCCCccccccCCCccCccCHHHHHHHHHHHHHHHHhhhccCCCChhHHHHhhcHHHHHHHHHhcc
Q 026960 54 LQAFSAALALSSILLSAPQPAVADISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYG 133 (230)
Q Consensus 54 mrr~~A~ll~~~l~~~~~~~A~AdvagLtPCseS~aF~kR~k~~vkkLe~rlkkY~~~S~palAl~a~i~~tk~RFe~Y~ 133 (230)
|||||++++++++|+++++.|+||++|||||+|||+||||+|+++|| ++|| ++||+||||||
T Consensus 1 Mrrl~~~~l~~~~~~~~~p~a~A~~agLtpC~es~aF~kr~k~~~~~---------~~s~---------~~~k~RFe~Y~ 62 (164)
T 1jb0_F 1 MRRFLALLLVLTLWLGFTPLASADVAGLVPCKDSPAFQKRAAAAVNT---------TADP---------ASGQKRFERYS 62 (164)
T ss_dssp -----------------------CGGGCEEGGGCHHHHHHHHTCCCC---------SSST---------THHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHccCchhhhhhcCCccCcCCHHHHHHHHhhccC---------CCCh---------HHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988 4444 99999999999
Q ss_pred cCcCccCCCCCceeeecCCCcccccchhchhHHHhhhhccccchhHHHHHHhCCCCCccceeeeehhHHHHHHHccccch
Q 026960 134 KYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWP 213 (230)
Q Consensus 134 ~~~lLCG~DGLPHLIvdG~~~HaGeF~IPgllFLYIAGwIGW~GRsYL~av~~~k~p~ekEIIIDVPLAlk~m~~Gf~WP 213 (230)
+ +|||+|||||||+||||+|+|||+|||++|||||||||||||+|||+++++|||+|||||||||||++||++||+||
T Consensus 63 ~--~LCG~DGLPHLI~dG~~~hagef~iPg~lFLYIAGwIGW~GR~YL~a~~~~k~p~ekEIiIDvplAl~~m~~Gf~WP 140 (164)
T 1jb0_F 63 Q--ALCGEDGLPHLVVDGRLSRAGDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWP 140 (164)
T ss_dssp T--SEECTTSSBCBCCSSCGGGTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTHHHHBCCHHHHHHHHHTGGGHH
T ss_pred H--hccCCCCCceeecCCCcceeeeeeechHHHHHHhhcccchhHHHHHHhccCCCcccceeEeccHHHHHHHHhhcccH
Confidence 6 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCeeeccCC
Q 026960 214 VAAYREFVNGELVVKDV 230 (230)
Q Consensus 214 laA~~E~~sG~L~a~d~ 230 (230)
++||||++||+|+++|.
T Consensus 141 laA~~E~~sG~L~~~d~ 157 (164)
T 1jb0_F 141 LAALKELASGELTAKDN 157 (164)
T ss_dssp HHHHHHHHTTCSSCCGG
T ss_pred HHHHHHHhcCeeeccCC
Confidence 99999999999999983
No 4
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Probab=100.00 E-value=3.8e-39 Score=266.15 Aligned_cols=78 Identities=33% Similarity=0.331 Sum_probs=74.6
Q ss_pred CCCccCccCHHHHHHHHHHHHHHHHhhhccCCCChhHHHHhhcHHHHHHHHHhcccCcCccCCCCCceeeecCCCccc
Q 026960 79 SGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHW 156 (230)
Q Consensus 79 agLtPCseS~aF~kR~k~~vkkLe~rlkkY~~~S~palAl~a~i~~tk~RFe~Y~~~~lLCG~DGLPHLIvdG~~~Ha 156 (230)
...|||+||++|+||++++|||||+|||||+|||||||||++||++||+||++||++|||||+|||||||+||.....
T Consensus 3 ~~~TpCseS~AFaKRlk~sVKKLE~RLkKYepgSpPALALqqqIeKTK~RFdkYgkSGLLCG~DGLPHLItDG~~~~~ 80 (154)
T 1qzv_F 3 XXXXXXXXXXXXXXXEKQALKKLQASLKLYADDSAPALAIKATMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 80 (154)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcccccccccccccccccccccccccccccc
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999986643
No 5
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=46.03 E-value=10 Score=29.42 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=31.4
Q ss_pred CCCccCccCHHHHHHHHHHHHHHHHhhhccCCCChhHHHHhhcHHHHHHHHHh-cccCcCccCCCCCceeee
Q 026960 79 SGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDN-YGKYGLLCGSDGLPHLIV 149 (230)
Q Consensus 79 agLtPCseS~aF~kR~k~~vkkLe~rlkkY~~~S~palAl~a~i~~tk~RFe~-Y~~~~lLCG~DGLPHLIv 149 (230)
+|+++ |.-.+.++++.+.+ .|+-..+.+++--.+ .-.+.||.+ |+- .++.| || |||-.
T Consensus 47 aG~~a--D~~~l~~~~~~~~~-------~~~~~~~~~~~~l~~-~~~~~~~~~~~~~-~~lv~-D~-p~Ly~ 105 (171)
T 1m4y_A 47 AGSVA--DAMTLFDRFEAKLR-------EWGGNLTKAAVELAK-DWRTDRVLRRLEA-LLLVA-DK-ENIFI 105 (171)
T ss_dssp ESCHH--HHHHHHHHHHHHHH-------HTTTCHHHHHHHHHH-HHHHCTTGGGCCC-EEEEE-CS-SCEEE
T ss_pred CccHH--HHHHHHHHHHHHHH-------HhcccHHHHHHHHHH-HHHHhCCCCceEE-EEEEE-cC-CEEEE
Confidence 45543 45556666654444 344333333332233 334567666 775 57788 76 88864
No 6
>2ra9_A Uncharacterized protein DUF1285; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.40A {Shewanella baltica}
Probab=39.60 E-value=10 Score=31.18 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=25.5
Q ss_pred cCccCCCCCceeeecCCCcccccchhchhHHHh
Q 026960 136 GLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLY 168 (230)
Q Consensus 136 ~lLCG~DGLPHLIvdG~~~HaGeF~IPgllFLY 168 (230)
--+||+-.+=++=.||+|-|.|.=+-+.+.-||
T Consensus 18 p~~cgd~dli~I~~dG~W~y~G~pI~r~lVrLF 50 (150)
T 2ra9_A 18 TPLCSEVPLFDINALGDWTYLGTSLPAKFAKLF 50 (150)
T ss_dssp ----CCCCSEEECTTSCEEETTEECCHHHHHHH
T ss_pred CCCccCcCceEECCCCcEEECCccccHHHHHHH
Confidence 459998777789999999999999999877776
No 7
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=37.21 E-value=68 Score=22.81 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhccCCCChh-----HHHHhhcHHHHHHHHHhcccC
Q 026960 96 QQLKKLESSLKLYAPDSAP-----ALAIKATMEKTKRRFDNYGKY 135 (230)
Q Consensus 96 ~~vkkLe~rlkkY~~~S~p-----alAl~a~i~~tk~RFe~Y~~~ 135 (230)
.+.+.||+-|++|.++++- |-++..+.++.++||+.+-+.
T Consensus 14 eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 14 EDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp HHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4667888889999988753 334688999999999998764
No 8
>2a8e_A Hypothetical protein YKTB; X-RAY, NESG, Q45498, structural genomics, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: d.296.1.1
Probab=33.38 E-value=28 Score=30.40 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=40.3
Q ss_pred ccCccCHHHHHHHHHHHHHHHHhhhc-c-------CCCChhHHHH-hhcHHHHHHHHHhcccCcCccCC
Q 026960 82 TPCKESKQFAKREKQQLKKLESSLKL-Y-------APDSAPALAI-KATMEKTKRRFDNYGKYGLLCGS 141 (230)
Q Consensus 82 tPCseS~aF~kR~k~~vkkLe~rlkk-Y-------~~~S~palAl-~a~i~~tk~RFe~Y~~~~lLCG~ 141 (230)
-=|.+...+++++.+....+.+.|-. | .|++.|.--+ .++.+.+-.||....++++|||-
T Consensus 105 ~E~p~k~~~a~~l~~~~~~~~~~LP~df~~S~DH~~p~~~~~~~l~~~~l~~~~eRl~~VKkaE~liGr 173 (220)
T 2a8e_A 105 YESPIKEEYGKLLEVNQETITKNIPDSFVWSADHTKPGVHKQSEMDKEQLKTLFERLQTVKKAELLCGI 173 (220)
T ss_dssp TTCTTHHHHHHHHHHTHHHHHHHSCTTCEEESCTTSCCCEEGGGCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccCCCHHHHHHHHHHhHHHHHhhCCCccEeeccccCcccCCcccCCHHHHHHHHHHHHhcCcceeEEee
Confidence 34566677888887776665432221 1 3554554333 56778889999999999999993
No 9
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=30.65 E-value=30 Score=21.82 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=13.0
Q ss_pred CCCCceeeecCCCcccc
Q 026960 141 SDGLPHLIVSGDQRHWG 157 (230)
Q Consensus 141 ~DGLPHLIvdG~~~HaG 157 (230)
-.|+|.+++||+..+.|
T Consensus 48 v~~~Pt~~~~G~~~~~G 64 (77)
T 1ilo_A 48 LTALPGLAVDGELKIMG 64 (77)
T ss_dssp CSSSSCEEETTEEEECS
T ss_pred CCcCCEEEECCEEEEcC
Confidence 47999999988765444
No 10
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=23.57 E-value=2.4e+02 Score=23.99 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=33.6
Q ss_pred cccccCCCc-----cCccCHHHHHHHHHHHHHHHHhhhccCCCChhHHHHh-hcHHHHHHHHHhc
Q 026960 74 AVADISGLT-----PCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIK-ATMEKTKRRFDNY 132 (230)
Q Consensus 74 A~AdvagLt-----PCseS~aF~kR~k~~vkkLe~rlkkY~~~S~palAl~-a~i~~tk~RFe~Y 132 (230)
+.....|+. -=+....+.+..+..-...+...+++..-+.+.++-. +.++++++-|.++
T Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lf~~~ 142 (311)
T 3mk7_C 78 GLGNWKGVLPGYEGGWTQEKQWEREVAQADEKYGPIFAKYAAMSVEEVAQDPQAVKMGARLFANY 142 (311)
T ss_dssp TSTTCCCCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHTCHHHHHHHHHHHHHH
T ss_pred hccccccccccCCCCCChHHHHHHHHHHHHHhhhHHHHHhccCChhhccCCHHHHHHHHHHHhhh
Confidence 334556666 3344566666655444444444555555555544433 3478899999875
No 11
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=22.06 E-value=45 Score=24.81 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHHHhhhccCC
Q 026960 87 SKQFAKREKQQLKKLESSLKLYAP 110 (230)
Q Consensus 87 S~aF~kR~k~~vkkLe~rlkkY~~ 110 (230)
-...|+++|+.|-+||++++.+.+
T Consensus 30 y~ssQ~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 30 YESMQQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC
Confidence 356789999999999998887554
No 12
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=21.74 E-value=79 Score=23.15 Aligned_cols=29 Identities=17% Similarity=0.539 Sum_probs=21.4
Q ss_pred HhhcHHHHHHHHHhcccCcCccCCCCCceeeecCCC
Q 026960 118 IKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQ 153 (230)
Q Consensus 118 l~a~i~~tk~RFe~Y~~~~lLCG~DGLPHLIvdG~~ 153 (230)
+++.+++..+..++|| =.|-|-+|++|++
T Consensus 132 ~~~~v~~~~~~a~~~g-------v~gTPtfiINGky 160 (184)
T 4dvc_A 132 VDSMVHRFDKQFQDSG-------LTGVPAVVVNNRY 160 (184)
T ss_dssp HHHHHHHHHHHHHHHT-------CCSSSEEEETTTE
T ss_pred HHHHHHHHHHHHHHcC-------CCcCCEEEECCEE
Confidence 3455666667777776 3699999999974
No 13
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=21.46 E-value=21 Score=27.76 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=20.7
Q ss_pred HHHHHhcccCcCccCCCCCceeeecCCCcccccc
Q 026960 126 KRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEF 159 (230)
Q Consensus 126 k~RFe~Y~~~~lLCG~DGLPHLIvdG~~~HaGeF 159 (230)
++--++|| .|+||-+++||..-..|.+
T Consensus 65 ~~~L~~~G-------~~~LP~~~VDGevv~~G~y 91 (106)
T 3ktb_A 65 NDFLQKHG-------ADALPITLVDGEIAVSQTY 91 (106)
T ss_dssp HHHHHTTC-------GGGCSEEEETTEEEECSSC
T ss_pred HHHHHHcC-------cccCCEEEECCEEEEeccC
Confidence 34455666 5899999999998888764
No 14
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=20.69 E-value=41 Score=21.32 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=13.3
Q ss_pred CCCCCceeeecCCCcccc
Q 026960 140 GSDGLPHLIVSGDQRHWG 157 (230)
Q Consensus 140 G~DGLPHLIvdG~~~HaG 157 (230)
|-.|+|.+++||+..+.|
T Consensus 52 ~v~~~Pt~~~~G~~~~~G 69 (85)
T 1nho_A 52 GLMAVPAIAINGVVRFVG 69 (85)
T ss_dssp CSSCSSEEEETTTEEEEC
T ss_pred CceeeCEEEECCEEEEcc
Confidence 457999999988763333
No 15
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=20.00 E-value=26 Score=30.76 Aligned_cols=17 Identities=18% Similarity=0.600 Sum_probs=12.7
Q ss_pred CC-CCCceeeecCCCcccccch
Q 026960 140 GS-DGLPHLIVSGDQRHWGEFI 160 (230)
Q Consensus 140 G~-DGLPHLIvdG~~~HaGeF~ 160 (230)
|+ ||||||++| +-||++
T Consensus 102 ~egd~l~gl~vd----~~g~~~ 119 (385)
T 2b78_A 102 QDGDSFGGVTID----CYGDFV 119 (385)
T ss_dssp GGGGTCTTEEEE----EETTEE
T ss_pred CCCCCCCceEEE----EECCEE
Confidence 43 899999999 456654
Done!