Query 026960
Match_columns 230
No_of_seqs 98 out of 100
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 04:08:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026960.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026960hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0f_ f.23.16.1 (F:) Subunit 100.0 2.3E-82 1.7E-86 519.4 4.4 133 77-229 1-133 (141)
2 d1wxxa2 c.66.1.51 (A:65-382) H 55.2 2.2 0.00016 35.0 1.7 14 137-150 33-47 (318)
3 d2as0a2 c.66.1.51 (A:73-396) H 54.4 3.4 0.00024 33.8 2.7 11 140-150 32-43 (324)
4 d1x94a_ c.80.1.3 (A:) Phosphoh 35.7 10 0.00076 28.7 2.7 53 90-143 2-54 (191)
5 d1un2a_ c.47.1.13 (A:) Disulfi 28.0 21 0.0015 27.0 3.3 30 118-154 32-61 (195)
6 d2b78a2 c.66.1.51 (A:69-385) H 26.4 7.9 0.00057 31.8 0.5 14 137-150 31-45 (317)
7 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 24.3 49 0.0036 21.5 4.2 39 96-134 7-50 (59)
8 d3bi1a1 a.48.2.1 (A:594-750) G 15.2 76 0.0055 22.6 3.9 28 138-165 88-116 (157)
9 d1jb0i_ f.23.17.1 (I:) Subunit 15.2 23 0.0017 21.9 0.8 9 162-170 27-35 (38)
10 d1fvka_ c.47.1.13 (A:) Disulfi 14.6 71 0.0052 22.0 3.5 28 118-152 131-158 (188)
No 1
>d1jb0f_ f.23.16.1 (F:) Subunit III of photosystem I reaction centre, PsaF {Synechococcus elongatus [TaxId: 32046]}
Probab=100.00 E-value=2.3e-82 Score=519.39 Aligned_cols=133 Identities=51% Similarity=1.026 Sum_probs=129.2
Q ss_pred ccCCCccCccCHHHHHHHHHHHHHHHHhhhccCCCChhHHHHhhcHHHHHHHHHhcccCcCccCCCCCceeeecCCCccc
Q 026960 77 DISGLTPCKESKQFAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHW 156 (230)
Q Consensus 77 dvagLtPCseS~aF~kR~k~~vkkLe~rlkkY~~~S~palAl~a~i~~tk~RFe~Y~~~~lLCG~DGLPHLIvdG~~~Ha 156 (230)
||+|||||+|||+||||+++++++ ++++++||+|||+||+ +|||+|||||||+||||+|+
T Consensus 1 DvagLtpC~es~~F~~R~~~a~~~------------------~~~~~~~k~RFe~Y~~--aLCG~DGLPHLIvdG~~~Ha 60 (141)
T d1jb0f_ 1 DVAGLVPCKDSPAFQKRAAAAVNT------------------TADPASGQKRFERYSQ--ALCGEDGLPHLVVDGRLSRA 60 (141)
T ss_dssp CGGGCEEGGGCHHHHHHHHTCCCC------------------SSSTTHHHHHHHHHTT--SEECTTSSBCBCCSSCGGGT
T ss_pred CCccCccCccCHHHHHHHHHHhhc------------------ccChHHHHHHHHHHHH--hccCCCCCceeecCCCcccc
Confidence 899999999999999999977776 7889999999999996 59999999999999999999
Q ss_pred ccchhchhHHHhhhhccccchhHHHHHHhCCCCCccceeeeehhHHHHHHHccccchHHHHhhhhcCeeeccC
Q 026960 157 GEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 229 (230)
Q Consensus 157 GeF~IPgllFLYIAGwIGW~GRsYL~av~~~k~p~ekEIIIDVPLAlk~m~~Gf~WPlaA~~E~~sG~L~a~d 229 (230)
|||+|||+||||||||||||||+|||+++++|||+|||||||||||++||++||+||++||||++||+|+++|
T Consensus 61 Gef~iPg~lFLYIAGwIGWaGR~YL~a~r~~k~p~~kEIiIDvplA~k~m~~g~~WPlaA~~E~~sG~L~~~d 133 (141)
T d1jb0f_ 61 GDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKD 133 (141)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTHHHHBCCHHHHHHHHHTGGGHHHHHHHHHHTTCSSCCG
T ss_pred hhhhHHHHHHHHHhhhhhhhhHHHHHHHhcCCCcccceeEeeHHHHHHHHHhhhhhHHHHHHhhhcCeeeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}
Probab=55.20 E-value=2.2 Score=35.04 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=11.5
Q ss_pred CccC-CCCCceeeec
Q 026960 137 LLCG-SDGLPHLIVS 150 (230)
Q Consensus 137 lLCG-~DGLPHLIvd 150 (230)
|.=| .||||.||+|
T Consensus 33 l~~ge~DglpGl~vD 47 (318)
T d1wxxa2 33 LVHAEGDLLPGLVVD 47 (318)
T ss_dssp EEEGGGGTCTTEEEE
T ss_pred EEEecCCCCCCEEEE
Confidence 4446 5999999999
No 3
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=54.36 E-value=3.4 Score=33.78 Aligned_cols=11 Identities=64% Similarity=0.924 Sum_probs=10.0
Q ss_pred C-CCCCceeeec
Q 026960 140 G-SDGLPHLIVS 150 (230)
Q Consensus 140 G-~DGLPHLIvd 150 (230)
| .||||.||+|
T Consensus 32 ge~DglpGl~vD 43 (324)
T d2as0a2 32 GEADYLPGLIVD 43 (324)
T ss_dssp GGGGTCTTEEEE
T ss_pred ccCCCCCCEEEE
Confidence 5 5999999999
No 4
>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]}
Probab=35.72 E-value=10 Score=28.71 Aligned_cols=53 Identities=23% Similarity=0.386 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhhhccCCCChhHHHHhhcHHHHHHHHHhcccCcCccCCCC
Q 026960 90 FAKREKQQLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDG 143 (230)
Q Consensus 90 F~kR~k~~vkkLe~rlkkY~~~S~palAl~a~i~~tk~RFe~Y~~~~lLCG~DG 143 (230)
|++..++.+....+.+++|-.+...-..+++-.+.....+++-++ =..||.-|
T Consensus 2 ~~d~i~~~~~e~~~~l~~~~~~~~~~~~I~~aa~~i~~~~~~~~k-I~~~G~Gg 54 (191)
T d1x94a_ 2 YQDLIRSELTEAADVLQKFLSDDHNIAQIEAAAKLIADSFKQGGK-VLSCGNGG 54 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTTCC-EEEECSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHcCCE-EEEEeCCC
Confidence 577888888888888888876655445567667777778888776 57888665
No 5
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}
Probab=28.00 E-value=21 Score=26.97 Aligned_cols=30 Identities=17% Similarity=0.421 Sum_probs=23.3
Q ss_pred HhhcHHHHHHHHHhcccCcCccCCCCCceeeecCCCc
Q 026960 118 IKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQR 154 (230)
Q Consensus 118 l~a~i~~tk~RFe~Y~~~~lLCG~DGLPHLIvdG~~~ 154 (230)
.++.+++..+...+||= .|.|-+|++|++.
T Consensus 32 ~~~~v~~~~~~a~~~gi-------~GtPtfiVnGky~ 61 (195)
T d1un2a_ 32 VKSLVAQQEKAAADVQL-------RGVPAMFVNGKYQ 61 (195)
T ss_dssp HHHHHHHHHHHHHHTTC-------CSSSEEEETTTEE
T ss_pred HHHHHHHHHHHHHHhCC-------CcCCEEEECCeee
Confidence 35566677777888884 5999999999864
No 6
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}
Probab=26.35 E-value=7.9 Score=31.77 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=11.7
Q ss_pred CccC-CCCCceeeec
Q 026960 137 LLCG-SDGLPHLIVS 150 (230)
Q Consensus 137 lLCG-~DGLPHLIvd 150 (230)
|.=| .||||.||+|
T Consensus 31 lv~ge~DglpGl~vD 45 (317)
T d2b78a2 31 LFNQDGDSFGGVTID 45 (317)
T ss_dssp EEEGGGGTCTTEEEE
T ss_pred EEEecCCCCCCEEEE
Confidence 5557 4999999999
No 7
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.28 E-value=49 Score=21.45 Aligned_cols=39 Identities=10% Similarity=0.200 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhccCCCChh-----HHHHhhcHHHHHHHHHhccc
Q 026960 96 QQLKKLESSLKLYAPDSAP-----ALAIKATMEKTKRRFDNYGK 134 (230)
Q Consensus 96 ~~vkkLe~rlkkY~~~S~p-----alAl~a~i~~tk~RFe~Y~~ 134 (230)
.+.+.||+-|++|.+|++- +-++..+.+...+|+....+
T Consensus 7 ee~~~le~Al~~~P~gt~~RW~~IA~~vgkt~~ev~~~~k~l~e 50 (59)
T d2cqqa1 7 EDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKD 50 (59)
T ss_dssp HHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCcHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5678899999999999874 44667888888888877664
No 8
>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.20 E-value=76 Score=22.62 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=16.2
Q ss_pred ccCCCCCceeee-cCCCcccccchhchhH
Q 026960 138 LCGSDGLPHLIV-SGDQRHWGEFITPGLL 165 (230)
Q Consensus 138 LCG~DGLPHLIv-dG~~~HaGeF~IPgll 165 (230)
|.|-..+=|+|- -|.|.--+...+|||-
T Consensus 88 lpgR~~~kHvi~aP~~~~~y~~~~FPgi~ 116 (157)
T d3bi1a1 88 LPDRPFYRHVIYAPSSHNKYAGESFPGIY 116 (157)
T ss_dssp BTTBTTCCBSSEEEETTEEEEEEESHHHH
T ss_pred CCCCCccceeeeCCCCCCCcccccchhHH
Confidence 344444447775 4445544567888884
No 9
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=15.19 E-value=23 Score=21.93 Aligned_cols=9 Identities=78% Similarity=1.294 Sum_probs=6.6
Q ss_pred chhHHHhhh
Q 026960 162 PGLLFLYIA 170 (230)
Q Consensus 162 PgllFLYIA 170 (230)
=|++|+||-
T Consensus 27 MglLFiyIE 35 (38)
T d1jb0i_ 27 MGLLFLYIE 35 (38)
T ss_dssp HHHHHHHHH
T ss_pred HHHHheeee
Confidence 368899974
No 10
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}
Probab=14.63 E-value=71 Score=21.99 Aligned_cols=28 Identities=18% Similarity=0.453 Sum_probs=21.0
Q ss_pred HhhcHHHHHHHHHhcccCcCccCCCCCceeeecCC
Q 026960 118 IKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGD 152 (230)
Q Consensus 118 l~a~i~~tk~RFe~Y~~~~lLCG~DGLPHLIvdG~ 152 (230)
+++.+++..++.++|| =+|-|-+|++|+
T Consensus 131 ~~~~v~~~~~~a~~~g-------I~gTPt~vInGk 158 (188)
T d1fvka_ 131 VKSLVAQQEKAAADVQ-------LRGVPAMFVNGK 158 (188)
T ss_dssp HHHHHHHHHHHHHHTT-------CCSSSEEEETTT
T ss_pred HHHHHHHHHHHHHHcC-------CccccEEEECCE
Confidence 3455666667777776 479999999997
Done!