Your job contains 1 sequence.
>026963
MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP
FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR
LNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRV
SSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026963
(230 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2042067 - symbol:AT2G27790 species:3702 "Arabi... 665 2.5e-65 1
TAIR|locus:2146410 - symbol:AT5G27300 "AT5G27300" species... 473 5.6e-45 1
UNIPROTKB|Q5F3S8 - symbol:RBM48 "Uncharacterized protein"... 260 5.2e-28 2
ZFIN|ZDB-GENE-060328-1 - symbol:rbm48 "RNA binding motif ... 267 1.5e-26 2
UNIPROTKB|F1PAA0 - symbol:RBM48 "Uncharacterized protein"... 250 5.6e-25 2
UNIPROTKB|F1SFC8 - symbol:RBM48 "Uncharacterized protein"... 249 1.5e-24 2
RGD|1310794 - symbol:Rbm48 "RNA binding motif protein 48"... 245 2.4e-24 2
UNIPROTKB|Q5RL73 - symbol:RBM48 "RNA-binding protein 48" ... 242 1.0e-23 2
UNIPROTKB|A6QPE1 - symbol:RBM48 "RNA-binding protein 48" ... 240 1.2e-23 2
MGI|MGI:2442653 - symbol:Rbm48 "RNA binding motif protein... 240 2.9e-23 2
UNIPROTKB|B7Z2K5 - symbol:RBM48 "RNA-binding protein 48" ... 242 5.2e-23 2
UNIPROTKB|C9J787 - symbol:RBM48 "RNA-binding protein 48" ... 176 1.6e-13 1
>TAIR|locus:2042067 [details] [associations]
symbol:AT2G27790 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 EMBL:CP002685 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00546409
RefSeq:NP_001189622.1 RefSeq:NP_180347.2 UniGene:At.38716
ProteinModelPortal:F4IGS5 SMR:F4IGS5 EnsemblPlants:AT2G27790.1
EnsemblPlants:AT2G27790.2 GeneID:817326 KEGG:ath:AT2G27790
OMA:YTVCDES Uniprot:F4IGS5
Length = 240
Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
Identities = 140/232 (60%), Positives = 168/232 (72%)
Query: 1 MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
M RYKDE P VRVYTVCDESRY+IVRNVP+LGCGDDL++LF TYG++EECKPMDAEDC
Sbjct: 1 MGRYKDETPAVRVYTVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAE 60
Query: 61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
FTDVY+IKFRL +NARFAKRKLDE FLGNRL++SYA ++E++ DTKDKLE+RRKEVLAR
Sbjct: 61 FTDVYWIKFRLITNARFAKRKLDESSFLGNRLQISYAPEYENVNDTKDKLESRRKEVLAR 120
Query: 121 LNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRV 180
LN + K S VT P L S QR E Q H +P+TRV
Sbjct: 121 LNPQKEK-----------STSQVTKLAGPALTQTDNVSSQRREMEYQ--FHRGNAPVTRV 167
Query: 181 SSDKDYFASQSMNQTVRLVREKLNKIESSTEHLQAGPASK-KPRID-NRRRI 230
SSD++YFAS SMNQTV+ VREKLNKIE S + P+S+ +P N++R+
Sbjct: 168 SSDQEYFASSSMNQTVKTVREKLNKIEESGNQKRLQPSSQTQPEESGNQKRL 219
>TAIR|locus:2146410 [details] [associations]
symbol:AT5G27300 "AT5G27300" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002885 EMBL:CP002688 PROSITE:PS51375
Pfam:PF01535 Pfam:PF13812 TIGRFAMs:TIGR00756 IPI:IPI00521037
RefSeq:NP_198082.4 UniGene:At.38714 ProteinModelPortal:F4K2V9
EnsemblPlants:AT5G27300.1 GeneID:832788 KEGG:ath:AT5G27300
PhylomeDB:F4K2V9 Uniprot:F4K2V9
Length = 575
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 107/219 (48%), Positives = 144/219 (65%)
Query: 15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSN 74
+VCDESRY+IVRNVP+LGCGDDL++LF TYG++EECKPMDAEDC FTDVY+IKFRL +N
Sbjct: 371 SVCDESRYMIVRNVPALGCGDDLMRLFMTYGEVEECKPMDAEDCAEFTDVYWIKFRLITN 430
Query: 75 ARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSS 134
AR KLDE FLGNRL++SYA ++ES++DTK+KLETRRKEVLARLN ++K +
Sbjct: 431 AR----KLDESSFLGNRLQISYAPEYESVSDTKEKLETRRKEVLARLNPHKAK--STSQV 484
Query: 135 VDLGEPSLV-TAPLQPNLVSEQITSWQRASSESQRISHVNESPITRVSSDKDYFASQSMN 193
L P+L T P E + R ++ R+S E SS + +++
Sbjct: 485 TKLAGPALTQTDNFSPRR-REMDYQFHRGNAPVTRVSSYQEY---FASSSMNQMV-KTVR 539
Query: 194 QTVRLVREKLN--KIESSTEHLQAGPASKKPRIDNRRRI 230
+ + + E N +++ S+ Q P K+ R+DNRRRI
Sbjct: 540 EKLNKIEESGNQKRLQPSS---QTQPDFKRTRVDNRRRI 575
>UNIPROTKB|Q5F3S8 [details] [associations]
symbol:RBM48 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] GO:GO:0005634 CTD:84060
eggNOG:NOG150976 GeneTree:ENSGT00390000004541 HOGENOM:HOG000082399
HOVERGEN:HBG054270 OMA:VPKPPED OrthoDB:EOG4RBQKJ EMBL:AADN02000703
EMBL:AJ851572 IPI:IPI00577512 RefSeq:NP_001026145.1
UniGene:Gga.10988 Ensembl:ENSGALT00000015413 GeneID:420555
KEGG:gga:420555 InParanoid:Q5F3S8 NextBio:20823449 Uniprot:Q5F3S8
Length = 350
Score = 260 (96.6 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 53/122 (43%), Positives = 80/122 (65%)
Query: 3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
+Y++ P V+VYT+ ESRYL+++ VP+LG +L++ FA YG IEE +D +
Sbjct: 27 KYREGRRPRAVKVYTINLESRYLLIQGVPALGVMKELVEQFALYGAIEEYHALDEYPAEQ 86
Query: 61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
FT+VY IKF+ AR AK+K+DE F G+ L V YA +FE++ +T++KL+ RRK +
Sbjct: 87 FTEVYLIKFQNLQCARVAKKKMDERSFFGSLLHVCYAPEFETVQETREKLQDRRKYIAKA 146
Query: 121 LN 122
N
Sbjct: 147 TN 148
Score = 68 (29.0 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 177 ITRVSSDKDYFASQSMNQTVRLVREKLNKIE---SSTEHLQAGPASKKPRIDNRRRI 230
I +V D D S+N + L+R KL ++ SST + G ++ KP + RRRI
Sbjct: 299 IPKVDMDDD-----SLNTSATLIRNKLKEVAESVSSTSVEKPGSSATKPLVKQRRRI 350
>ZFIN|ZDB-GENE-060328-1 [details] [associations]
symbol:rbm48 "RNA binding motif protein 48"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR012677 PROSITE:PS50102 ZFIN:ZDB-GENE-060328-1
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 CTD:84060
eggNOG:NOG150976 GeneTree:ENSGT00390000004541 HOGENOM:HOG000082399
HOVERGEN:HBG054270 OrthoDB:EOG4RBQKJ EMBL:AY423031 EMBL:BX510986
EMBL:BC091857 EMBL:BC134007 IPI:IPI00503608 RefSeq:NP_991167.1
UniGene:Dr.81876 Ensembl:ENSDART00000049147 GeneID:402897
KEGG:dre:402897 InParanoid:Q58EL1 NextBio:20816715 Bgee:A4FVJ7
Uniprot:A4FVJ7
Length = 364
Score = 267 (99.0 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 60/141 (42%), Positives = 93/141 (65%)
Query: 2 PRYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCD 59
P+Y++ V+VYT+ ESRYL+V+ VP++G +L++LFA YG IEE +P+D +
Sbjct: 30 PKYREGRRLKAVKVYTINLESRYLLVQGVPAIGVMAELVQLFALYGVIEEYRPLDEYPAE 89
Query: 60 PFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEV-- 117
FT+VY I+F+ ++AR AKR DE F G +L V YA ++E++ +TK KL+ RR+ V
Sbjct: 90 QFTEVYLIQFQKLTSARAAKRHTDEKSFFGGQLHVCYAPEYETVEETKQKLQDRRRYVNW 149
Query: 118 ----LARLNSGRSKVPNIHSS 134
A+L+S +++V N SS
Sbjct: 150 ASQNAAKLHSQQAEV-NTESS 169
Score = 47 (21.6 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 191 SMNQTVRLVREKLNKIESSTEH--LQAGPASKKPR 223
S+N T L+R + K S E +QA + KPR
Sbjct: 327 SLNVTANLIRNTMTKAASVPEAKPVQAKHTTPKPR 361
>UNIPROTKB|F1PAA0 [details] [associations]
symbol:RBM48 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] GO:GO:0005634
CTD:84060 GeneTree:ENSGT00390000004541 OMA:VPKPPED
EMBL:AAEX03009307 RefSeq:XP_539419.3 Ensembl:ENSCAFT00000003136
GeneID:482302 KEGG:cfa:482302 Uniprot:F1PAA0
Length = 367
Score = 250 (93.1 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 52/125 (41%), Positives = 79/125 (63%)
Query: 3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
+Y++ P V+VYT+ ESRYL+++ VP++G +L++ FA YG IE+ +D +
Sbjct: 26 KYREGRRPRAVKVYTINLESRYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAED 85
Query: 61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
FT+VY IKF +AR AKRK+DE F G L V YA +FE++ +T+ KL+ RK +AR
Sbjct: 86 FTEVYLIKFMNLQSARTAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQ-ERKAYIAR 144
Query: 121 LNSGR 125
+
Sbjct: 145 TTKNK 149
Score = 49 (22.3 bits), Expect = 5.6e-25, Sum P(2) = 5.6e-25
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 191 SMNQTVRLVREKLNKIESST----EHLQAGPASKKPRIDNRRRI 230
S+N T L+R KL ++ SS E S +P + RRRI
Sbjct: 325 SLNTTANLIRNKLQEVISSVPKPPEDKLEDVHSSRP-LKQRRRI 367
>UNIPROTKB|F1SFC8 [details] [associations]
symbol:RBM48 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] GO:GO:0005634
GeneTree:ENSGT00390000004541 OMA:VPKPPED EMBL:FP565472
RefSeq:XP_003130189.2 Ensembl:ENSSSCT00000016688 GeneID:100518743
KEGG:ssc:100518743 Uniprot:F1SFC8
Length = 367
Score = 249 (92.7 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 52/125 (41%), Positives = 78/125 (62%)
Query: 3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
+Y++ P VRVYT+ ESRYL+++ VP++G +L++ FA YG IE+ +D +
Sbjct: 26 KYREGRRPRAVRVYTINLESRYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAED 85
Query: 61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
FT+VY IKF +AR AKRK+DE F G L V YA +FE++ +T+ KL+ R +AR
Sbjct: 86 FTEVYLIKFLNLQSARIAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQ-ERNAYIAR 144
Query: 121 LNSGR 125
+
Sbjct: 145 TTKNK 149
Score = 46 (21.3 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 191 SMNQTVRLVREKLNKIESS 209
S+N T L+R KL ++ SS
Sbjct: 325 SLNTTANLIRNKLKEVISS 343
>RGD|1310794 [details] [associations]
symbol:Rbm48 "RNA binding motif protein 48" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] PROSITE:PS50102 RGD:1310794 GO:GO:0005634
GO:GO:0003723 CTD:84060 eggNOG:NOG150976
GeneTree:ENSGT00390000004541 HOGENOM:HOG000082399
HOVERGEN:HBG054270 OMA:VPKPPED OrthoDB:EOG4RBQKJ EMBL:BC093393
IPI:IPI00198718 RefSeq:NP_001019417.1 UniGene:Rn.24927 PRIDE:Q561R3
Ensembl:ENSRNOT00000012086 GeneID:296840 KEGG:rno:296840
UCSC:RGD:1310794 InParanoid:Q561R3 NextBio:641823
Genevestigator:Q561R3 Uniprot:Q561R3
Length = 371
Score = 245 (91.3 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 50/125 (40%), Positives = 80/125 (64%)
Query: 3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
+Y++ P V+VYT+ ES+YL+++ VP++G +L++ FA YG IE+ +D +
Sbjct: 26 KYREGRRPRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAED 85
Query: 61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
FT+VY IKF +AR AK+K+DE F G L V YA +FE++ +T+ KLE RK ++R
Sbjct: 86 FTEVYLIKFVKLQSARIAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLE-ERKAYISR 144
Query: 121 LNSGR 125
+ +
Sbjct: 145 VTKNQ 149
Score = 49 (22.3 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 191 SMNQTVRLVREKLNKIESST----EHLQAGPASKKPRIDNRRRI 230
S+N T L+R KL ++ SS E + PR RRRI
Sbjct: 329 SLNTTANLIRSKLKEVTSSVPKPPEDNGEDVCTSHPR-KQRRRI 371
>UNIPROTKB|Q5RL73 [details] [associations]
symbol:RBM48 "RNA-binding protein 48" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
PROSITE:PS50102 GO:GO:0005634 GO:GO:0003723 EMBL:CH471091
EMBL:CH236949 CTD:84060 eggNOG:NOG150976 HOGENOM:HOG000082399
HOVERGEN:HBG054270 OrthoDB:EOG4RBQKJ EMBL:AL136619 EMBL:CR933641
EMBL:BC033561 EMBL:BC044570 EMBL:BC104865 EMBL:BC104867
EMBL:BC143576 EMBL:AK054777 IPI:IPI00549763 RefSeq:NP_115496.2
UniGene:Hs.21590 ProteinModelPortal:Q5RL73 SMR:Q5RL73 IntAct:Q5RL73
MINT:MINT-3979239 PhosphoSite:Q5RL73 DMDM:74736145 PRIDE:Q5RL73
Ensembl:ENST00000265732 GeneID:84060 KEGG:hsa:84060 UCSC:uc003ulz.3
GeneCards:GC07P092159 HGNC:HGNC:21785 HPA:HPA021777 HPA:HPA025306
neXtProt:NX_Q5RL73 PharmGKB:PA164717383 InParanoid:Q5RL73
ChiTaRS:RBM48 GenomeRNAi:84060 NextBio:73212 ArrayExpress:Q5RL73
Bgee:Q5RL73 CleanEx:HS_C7orf64 Genevestigator:Q5RL73 Uniprot:Q5RL73
Length = 367
Score = 242 (90.2 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 49/118 (41%), Positives = 77/118 (65%)
Query: 3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
+Y++ P V+VYT+ ES+YL+++ VP++G +L++ FA YG IE+ +D +
Sbjct: 26 KYREGRRPRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGAIEQYNALDEYPAED 85
Query: 61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVL 118
FT+VY IKF +AR AKRK+DE F G L V YA +FE++ +T+ KL+ R+ V+
Sbjct: 86 FTEVYLIKFMNLQSARTAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQMRKAYVV 143
Score = 46 (21.3 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 191 SMNQTVRLVREKLNKIESS 209
S+N T L+R KL ++ SS
Sbjct: 325 SLNTTANLIRHKLKEVISS 343
>UNIPROTKB|A6QPE1 [details] [associations]
symbol:RBM48 "RNA-binding protein 48" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] PROSITE:PS50102 GO:GO:0005634 GO:GO:0003723
EMBL:BC149271 EMBL:AW325666 IPI:IPI00867061 IPI:IPI00886706
RefSeq:NP_001095324.2 UniGene:Bt.30620 Ensembl:ENSBTAT00000024429
GeneID:505408 KEGG:bta:505408 CTD:84060 eggNOG:NOG150976
GeneTree:ENSGT00390000004541 HOGENOM:HOG000082399
HOVERGEN:HBG054270 InParanoid:A6QPE1 OMA:VPKPPED OrthoDB:EOG4RBQKJ
NextBio:20867129 Uniprot:A6QPE1
Length = 362
Score = 240 (89.5 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 51/125 (40%), Positives = 77/125 (61%)
Query: 3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
+Y++ P V+VYT+ ES YL+++ VP++G +L++ FA YG IE+ +D +
Sbjct: 26 KYREGRRPRAVKVYTINLESWYLLIQGVPAVGAMKELVERFALYGTIEQYNALDEYPAED 85
Query: 61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
FT+VY IKF +AR AKRK+DE F G L V YA +FE++ +T+ KL R V AR
Sbjct: 86 FTEVYLIKFLNLQSARIAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLRERNAYV-AR 144
Query: 121 LNSGR 125
+ +
Sbjct: 145 MTKNK 149
Score = 47 (21.6 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 191 SMNQTVRLVREKLNKIESS 209
S N T L+REKL ++ SS
Sbjct: 320 SWNTTASLIREKLKEVISS 338
>MGI|MGI:2442653 [details] [associations]
symbol:Rbm48 "RNA binding motif protein 48" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] PROSITE:PS50102 MGI:MGI:2442653 GO:GO:0005634
GO:GO:0003723 CTD:84060 eggNOG:NOG150976 HOGENOM:HOG000082399
HOVERGEN:HBG054270 OrthoDB:EOG4RBQKJ EMBL:AK041876 EMBL:AK047811
EMBL:BC029549 IPI:IPI00223866 IPI:IPI00985867 RefSeq:NP_766579.3
UniGene:Mm.38014 ProteinModelPortal:Q8K2X2 SMR:Q8K2X2
PhosphoSite:Q8K2X2 PRIDE:Q8K2X2 GeneID:269623 KEGG:mmu:269623
UCSC:uc008whc.2 UCSC:uc008whd.2 InParanoid:Q8K2X2 NextBio:392935
Bgee:Q8K2X2 CleanEx:MM_C030048B08RIK Genevestigator:Q8K2X2
Uniprot:Q8K2X2
Length = 371
Score = 240 (89.5 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 49/125 (39%), Positives = 79/125 (63%)
Query: 3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
+Y++ P V+VYT+ ES+YL+++ VP++G +L++ FA YG IE+ +D +
Sbjct: 26 KYREGRRPRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAED 85
Query: 61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLAR 120
FT+VY IKF +AR AK+K+DE F G L V YA +FE++ +T+ KL+ RK + R
Sbjct: 86 FTEVYLIKFVKLQSARVAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLQ-ERKAYITR 144
Query: 121 LNSGR 125
+ +
Sbjct: 145 VTKNQ 149
Score = 45 (20.9 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 191 SMNQTVRLVREKLNKIESS 209
S+N T L+R KL ++ SS
Sbjct: 329 SLNTTATLIRRKLKEVISS 347
>UNIPROTKB|B7Z2K5 [details] [associations]
symbol:RBM48 "RNA-binding protein 48" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] GO:GO:0005634 EMBL:AC007566
HOGENOM:HOG000082399 HOVERGEN:HBG054270 OMA:VPKPPED
UniGene:Hs.21590 HGNC:HGNC:21785 ChiTaRS:RBM48 EMBL:AC005156
EMBL:AK294812 IPI:IPI00937338 ProteinModelPortal:B7Z2K5 SMR:B7Z2K5
Ensembl:ENST00000481551 UCSC:uc003uma.3 ArrayExpress:B7Z2K5
Bgee:B7Z2K5 Uniprot:B7Z2K5
Length = 376
Score = 242 (90.2 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 49/118 (41%), Positives = 77/118 (65%)
Query: 3 RYKD--EPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP 60
+Y++ P V+VYT+ ES+YL+++ VP++G +L++ FA YG IE+ +D +
Sbjct: 26 KYREGRRPRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGAIEQYNALDEYPAED 85
Query: 61 FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVL 118
FT+VY IKF +AR AKRK+DE F G L V YA +FE++ +T+ KL+ R+ V+
Sbjct: 86 FTEVYLIKFMNLQSARTAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQMRKAYVV 143
Score = 41 (19.5 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 191 SMNQTVRLVREKLNKI 206
S+N T L+R KL ++
Sbjct: 325 SLNTTANLIRHKLKEV 340
>UNIPROTKB|C9J787 [details] [associations]
symbol:RBM48 "RNA-binding protein 48" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AC007566
HGNC:HGNC:21785 ChiTaRS:RBM48 EMBL:AC005156 IPI:IPI00978258
ProteinModelPortal:C9J787 SMR:C9J787 Ensembl:ENST00000496410
ArrayExpress:C9J787 Bgee:C9J787 Uniprot:C9J787
Length = 92
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 36/83 (43%), Positives = 53/83 (63%)
Query: 36 DLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95
+L++ FA YG IE+ +D + FT+VY IKF +AR AKRK+DE F G L V
Sbjct: 3 ELVERFALYGAIEQYNALDEYPAEDFTEVYLIKFMNLQSARTAKRKMDEQSFFGGLLHVC 62
Query: 96 YASQFESLADTKDKLETRRKEVL 118
YA +FE++ +T+ KL+ R+ V+
Sbjct: 63 YAPEFETVEETRKKLQMRKAYVV 85
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 230 230 0.00083 113 3 11 22 0.42 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 598 (64 KB)
Total size of DFA: 175 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.28u 0.16s 24.44t Elapsed: 00:00:01
Total cpu time: 24.28u 0.16s 24.44t Elapsed: 00:00:01
Start: Thu May 9 16:19:18 2013 End: Thu May 9 16:19:19 2013