BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026963
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
D R L+V +P+ L +LF YG IE K + + F+KF+ S+A+
Sbjct: 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQ 99
Query: 78 AKRKLDEFVFLGNRLKVSYAS 98
A L+ F L RLKV+ A+
Sbjct: 100 AIAGLNGFNILNKRLKVALAA 120
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81
L VRN+ +DL KLF+ YG + E P+D+ P F+ F +A A +
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKP-KGFAFVTFMFPEHAVKAYAE 69
Query: 82 LDEFVFLGNRLKV 94
+D VF G L V
Sbjct: 70 VDGQVFQGRMLHV 82
>pdb|2E44|A Chain A, Solution Structure Of Rna Binding Domain In Insulin-Like
Growth Factor 2 Mrna Binding Protein 3
Length = 96
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKR 80
R L +RN+P + L L YG +E C+ ++ D T V + + AR A
Sbjct: 16 RKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNT---DSETAVVNVTYSSKDQARQALD 72
Query: 81 KLDEFVFLGNRLKVSY 96
KL+ F LKV+Y
Sbjct: 73 KLNGFQLENFTLKVAY 88
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With
The Au-Rich Element
Length = 174
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%)
Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
D LIV +P D+ LF + GDIE CK + + F+ + ++A
Sbjct: 2 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 61
Query: 78 AKRKLDEFVFLGNRLKVSYA 97
A L+ +KVSYA
Sbjct: 62 AINTLNGLKLQTKTIKVSYA 81
>pdb|3IC6|A Chain A, Crystal Structure Of Putative Methylase Family Protein
From Neisseria Gonorrhoeae
Length = 223
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 20/118 (16%)
Query: 101 ESLADTKDK--LETRRKEVLARLNSGRSKVPNIHSSVDLGEP-SLVTAPLQPNLVSEQIT 157
E+LADT L +RR+E+ A L + R VP + + + GE +LV L E++
Sbjct: 101 EALADTTIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVR 160
Query: 158 SWQRASSESQRISHVNESPITRVSSDKDYFASQSMNQTVRLV-REKLNKIESSTEHLQ 214
+ R + ++ + DYF S ++ Q V++V E ++ +S HLQ
Sbjct: 161 ACNR---------------LXTINGNPDYF-SLNLAQAVQVVCYEIFSQTDSPXTHLQ 202
>pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain
(Rbd1) Of Hu Antigen C (Huc)
Length = 89
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%)
Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
D LIV +P D+ LF + GDIE CK + + F+ + ++A
Sbjct: 2 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 61
Query: 78 AKRKLDEFVFLGNRLKVSYA 97
A L+ +KVSYA
Sbjct: 62 AINTLNGLKLQTKTIKVSYA 81
>pdb|3S26|A Chain A, Crystal Structure Of Murine Siderocalin (Lipocalin 2,
24p3)
Length = 190
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 140 PSLVTAPLQPNLVSEQITS-WQRASSESQRISHVNESPITRVSSDKDYFASQSMNQTVRL 198
PSL+T PLQP+ S+Q W + E T S+ + + S N T L
Sbjct: 11 PSLLTVPLQPDFRSDQFRGRWYVVGLAGNAVQKKTEGSFTMYSTIYELQENNSYNVTSIL 70
Query: 199 VREK 202
VR++
Sbjct: 71 VRDQ 74
>pdb|2LA4|A Chain A, Nmr Structure Of The C-Terminal Rrm Domain Of Poly(U)
Binding 1
Length = 101
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 25 VRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE 84
+ N+P DL+ LF +G I + K + C FIK+ A L
Sbjct: 32 IGNIPHFATEADLIPLFQNFGFILDFKHYPEKGC------CFIKYDTHEQAAVCIVALAN 85
Query: 85 FVFLGNRLKVSYASQ 99
F F G L+ + +
Sbjct: 86 FPFQGRNLRTGWGKE 100
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P +L LF G I C+ M F+ F +++ A + L
Sbjct: 6 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65
Query: 83 DEFVFLGNRLKVSYAS-QFESLADT 106
+ RLKVSYA ES+ DT
Sbjct: 66 NGITVRNKRLKVSYARPGGESIKDT 90
>pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P D+L LF++ G++E K + + F+ + +A A L
Sbjct: 7 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 66
Query: 83 DEFVFLGNRLKVSYA 97
+ +KVSYA
Sbjct: 67 NGLRLQSKTIKVSYA 81
>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 9 PGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIK 68
PG + +T + L V N+P +++ KLF YG E +D FI+
Sbjct: 14 PGEKTFT---QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV--FIHKD----KGFGFIR 64
Query: 69 FRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESL 103
+ A AK +LD G +L+V +A SL
Sbjct: 65 LETRTLAEIAKVELDNMPLRGKQLRVRFACHSASL 99
>pdb|4FZV|B Chain B, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 239
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 139 EPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRV---SSDKDYFASQSMNQT 195
EP V P L+ I ++ SS Q++ + E + RV + Q +N T
Sbjct: 48 EPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLG-LGEGKLKRVLYCCPEIFTMRQQDINDT 106
Query: 196 VRLVREK-LNKIESSTEHLQAGPA 218
VRL++EK L ++ T+ L + P+
Sbjct: 107 VRLLKEKCLFTVQQVTKILHSCPS 130
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of
Hur Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of
Hur Complexed With Rna
Length = 177
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P D+L LF++ G++E K + + F+ + +A A L
Sbjct: 5 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 64
Query: 83 DEFVFLGNRLKVSYA 97
+ +KVSYA
Sbjct: 65 NGLRLQSKTIKVSYA 79
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs
Of Human Antigen R
Length = 177
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P D+L LF++ G++E K + + F+ + +A A L
Sbjct: 5 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 64
Query: 83 DEFVFLGNRLKVSYA 97
+ +KVSYA
Sbjct: 65 NGLRLQSKTIKVSYA 79
>pdb|2OWL|A Chain A, Crystal Structure Of E. Coli Rdgc
pdb|2OWL|B Chain B, Crystal Structure Of E. Coli Rdgc
Length = 303
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 141 SLVTAPLQP----NLVSEQITSWQRASSESQRISHVNESPITRVSSDKDYFASQSMNQTV 196
SL + P+ P N + +T W R+ S +Q ++E+ + + D ++ + T
Sbjct: 157 SLGSLPVVPLSXENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTS 216
Query: 197 RLVREKLNKIESSTEHLQAGPASKKPRIDNRRRI 230
E T H++AG K +D ++RI
Sbjct: 217 ----------EEITNHIEAGKVVTKLALDWQQRI 240
>pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P D+L LF++ G++E K + + F+ + +A A L
Sbjct: 22 LIVNYLPQNXTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81
Query: 83 DEFVFLGNRLKVSYA 97
+ +KVSYA
Sbjct: 82 NGLRLQSKTIKVSYA 96
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 137 LGEP-SLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRVSSDKDYFASQSMNQT 195
+G P S++++P+ P+ +S T S+ S ++S SP+ VSS +D +N
Sbjct: 66 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLS----SPMNPVSSSEDIKPPLGLNGV 121
Query: 196 VRLVREKLNKIESSTEHLQA 215
+++ + S T+H+ A
Sbjct: 122 LKVPAHPSGNMASFTKHICA 141
>pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%)
Query: 25 VRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE 84
V N+P +DL ++F+ YG + + M +D V FI F +A+ R ++
Sbjct: 21 VSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN 80
Query: 85 FVFLGNRLKVSYA 97
G +K S A
Sbjct: 81 KQLFGRVIKASIA 93
>pdb|3TZT|A Chain A, The Structure Of A Protein In Glycosyl Transferase Family
8 From Anaerococcus Prevotii.
pdb|3TZT|B Chain B, The Structure Of A Protein In Glycosyl Transferase Family
8 From Anaerococcus Prevotii
Length = 276
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%)
Query: 115 KEVLARLNSGRSKVPNIHSSVDLGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNE 174
KE RL +G N+ + L LV PL L ++ A+S + + N
Sbjct: 85 KEXYYRLLAGEFLPENLGEILYLDPDXLVINPLDDLLRTDISDYILAAASHTGKTDXANN 144
Query: 175 SPITRVSSDKDYFASQSMNQTVRLVREKLN 204
R+ +D DY+ S + ++ RE+++
Sbjct: 145 VNRIRLGTDTDYYNSGLLLINLKRAREEID 174
>pdb|4FP9|B Chain B, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|E Chain E, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|G Chain G, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|H Chain H, Human Mterf4-Nsun4 Protein Complex
Length = 335
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 139 EPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRV---SSDKDYFASQSMNQT 195
EP V P L+ I ++ SS Q++ + E + RV + Q +N T
Sbjct: 93 EPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLG-LGEGKLKRVLYCCPEIFTMRQQDINDT 151
Query: 196 VRLVREK-LNKIESSTEHLQAGPA 218
VRL++EK L ++ T+ L + P+
Sbjct: 152 VRLLKEKCLFTVQQVTKILHSCPS 175
>pdb|3U1L|A Chain A, Structure Of The Mrna Splicing Complex Component Cwc2
pdb|3U1M|A Chain A, Structure Of The Mrna Splicing Complex Component Cwc2
Length = 240
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 40 LFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
+F+ GDI+ + +++++C F+KF+ +NA FAK +
Sbjct: 163 VFSRLGDIDRIRYVESKNCG------FVKFKYQANAEFAKEAM 199
>pdb|3TP2|A Chain A, Crystal Structure Of The Splicing Factor Cwc2 From Yeast
pdb|3TP2|B Chain B, Crystal Structure Of The Splicing Factor Cwc2 From Yeast
Length = 229
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 40 LFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
+F+ GDI+ + +++++C F+KF+ +NA FAK +
Sbjct: 165 VFSRLGDIDRIRYVESKNCG------FVKFKYQANAEFAKEAM 201
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 3 RYKDEP--PGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPM 53
++ D P PG ++Y D++R+L N+ LG D+ +K+ ++EE + +
Sbjct: 396 KFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESI 448
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P +L LF G I C+ F+ F +++ A + L
Sbjct: 17 LIVNYLPQDXTDRELYALFRAIGPINTCRIXRDYKTGYSFGYAFVDFTSEXDSQRAIKVL 76
Query: 83 DEFVFLGNRLKVSYAS-QFESLADT 106
+ RLKVSYA ES+ DT
Sbjct: 77 NGITVRNKRLKVSYARPGGESIKDT 101
>pdb|2DNO|A Chain A, Solution Structure Of Rna Binding Domain In
Trinucleotide Repeat Containing 4 Variant
Length = 102
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFA 78
E R L V + +D+ K+F +G I+EC + D F+KF+ + A+ A
Sbjct: 11 EDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTS-KGCAFVKFQTHAEAQAA 69
Query: 79 KRKL 82
L
Sbjct: 70 INTL 73
>pdb|2SXL|A Chain A, Sex-Lethal Rbd1, Nmr, Minimized Average Structure
Length = 88
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P +L LF G I C+ M F+ F +++ A + L
Sbjct: 6 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65
Query: 83 DEFVFLGNRLKVSYA 97
+ RLKVSYA
Sbjct: 66 NGITVRNKRLKVSYA 80
>pdb|1I9T|A Chain A, Crystal Structure Of The Oxidized Rna Triphosphatase
Domain Of Mouse Mrna Capping Enzyme
Length = 210
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 29 PSLGCGDDLLKLFATYGDIEECKP 52
P + GD L +LF YGDIEE P
Sbjct: 162 PGIYKGDYLKELFRRYGDIEEAPP 185
>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of
Mouse Mrna Capping Enzyme
Length = 210
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 29 PSLGCGDDLLKLFATYGDIEECKP 52
P + GD L +LF YGDIEE P
Sbjct: 162 PGIYKGDYLKELFRRYGDIEEAPP 185
>pdb|1TQZ|A Chain A, Solution Structure Of Necap1 Protein
Length = 133
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 6 DEPPGVRVYTVCDESRYLIVR 26
++ PG+ V TV D SRY ++R
Sbjct: 75 EQYPGIAVETVTDSSRYFVIR 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,454,632
Number of Sequences: 62578
Number of extensions: 246602
Number of successful extensions: 545
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 34
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)