BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026963
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4FVJ7|RBM48_DANRE RNA-binding protein 48 OS=Danio rerio GN=rbm48 PE=2 SV=1
Length = 364
Score = 114 bits (284), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 88/131 (67%), Gaps = 7/131 (5%)
Query: 10 GVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKF 69
V+VYT+ ESRYL+V+ VP++G +L++LFA YG IEE +P+D + FT+VY I+F
Sbjct: 40 AVKVYTINLESRYLLVQGVPAIGVMAELVQLFALYGVIEEYRPLDEYPAEQFTEVYLIQF 99
Query: 70 RLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEV------LARLNS 123
+ ++AR AKR DE F G +L V YA ++E++ +TK KL+ RR+ V A+L+S
Sbjct: 100 QKLTSARAAKRHTDEKSFFGGQLHVCYAPEYETVEETKQKLQDRRRYVNWASQNAAKLHS 159
Query: 124 GRSKVPNIHSS 134
+++V N SS
Sbjct: 160 QQAEV-NTESS 169
>sp|Q5R4U2|RBM48_PONAB RNA-binding protein 48 OS=Pongo abelii GN=RBM48 PE=2 SV=1
Length = 367
Score = 100 bits (250), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 73/111 (65%)
Query: 8 PPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFI 67
P V+VYT+ ES+YL+++ VP++G +L++ FA YG IE+ +D + FT+VY I
Sbjct: 33 PRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGTIEQYNALDEYPAEDFTEVYLI 92
Query: 68 KFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVL 118
KF +AR AKRK+DE F G L V YA +FE++ +T+ KL+ R+ V+
Sbjct: 93 KFMNLQSARAAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQVRKAYVV 143
>sp|Q5RL73|RBM48_HUMAN RNA-binding protein 48 OS=Homo sapiens GN=RBM48 PE=2 SV=1
Length = 367
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 73/111 (65%)
Query: 8 PPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFI 67
P V+VYT+ ES+YL+++ VP++G +L++ FA YG IE+ +D + FT+VY I
Sbjct: 33 PRAVKVYTINLESQYLLIQGVPAVGVMKELVERFALYGAIEQYNALDEYPAEDFTEVYLI 92
Query: 68 KFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVL 118
KF +AR AKRK+DE F G L V YA +FE++ +T+ KL+ R+ V+
Sbjct: 93 KFMNLQSARTAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQMRKAYVV 143
>sp|Q561R3|RBM48_RAT RNA-binding protein 48 OS=Rattus norvegicus GN=Rbm48 PE=2 SV=1
Length = 371
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 71/107 (66%)
Query: 8 PPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFI 67
P V+VYT+ ES+YL+++ VP++G +L++ FA YG IE+ +D + FT+VY I
Sbjct: 33 PRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAEDFTEVYLI 92
Query: 68 KFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRR 114
KF +AR AK+K+DE F G L V YA +FE++ +T+ KLE R+
Sbjct: 93 KFVKLQSARIAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLEERK 139
>sp|Q8K2X2|RBM48_MOUSE RNA-binding protein 48 OS=Mus musculus GN=Rbm48 PE=2 SV=2
Length = 371
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 71/107 (66%)
Query: 8 PPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFI 67
P V+VYT+ ES+YL+++ VP++G +L++ FA YG IE+ +D + FT+VY I
Sbjct: 33 PRAVKVYTINLESQYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAEDFTEVYLI 92
Query: 68 KFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRR 114
KF +AR AK+K+DE F G L V YA +FE++ +T+ KL+ R+
Sbjct: 93 KFVKLQSARVAKKKMDEQSFFGGLLHVCYAPEFETVEETRKKLQERK 139
>sp|A6QPE1|RBM48_BOVIN RNA-binding protein 48 OS=Bos taurus GN=RBM48 PE=2 SV=2
Length = 362
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 8 PPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFI 67
P V+VYT+ ES YL+++ VP++G +L++ FA YG IE+ +D + FT+VY I
Sbjct: 33 PRAVKVYTINLESWYLLIQGVPAVGAMKELVERFALYGTIEQYNALDEYPAEDFTEVYLI 92
Query: 68 KFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGR 125
KF +AR AKRK+DE F G L V YA +FE++ +T+ KL R V AR+ +
Sbjct: 93 KFLNLQSARIAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLRERNAYV-ARMTKNK 149
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSNARF 77
ES L +RN+P GD++L F ++G +++ P+D + + F+ F ++A
Sbjct: 312 ESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQ-TKASKGLAFVSFSDPAHALA 370
Query: 78 AKRKLDEFVFLGNRLKVSYASQFESLADTKDK 109
A R D F G L + A ++LA+T K
Sbjct: 371 AYRAKDGSTFQGRLLHLLPAVNKDALAETGSK 402
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSNARF 77
ES L VRN+P +DL KLF+ YG + E P+D+ P FI F +A
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKP-KGFAFITFMFPEHAVK 458
Query: 78 AKRKLDEFVFLGNRLKV 94
A ++D VF G L V
Sbjct: 459 AYSEVDGQVFQGRMLHV 475
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV+N+P+ + +LFA +G + +C +D F FI F+ A+ A++
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGK-FRKFGFIGFKSEEEAQKAQKHF 62
Query: 83 DEFVFLGNRLKVSYASQF 100
++ +R+ V + F
Sbjct: 63 NKSFIDTSRITVEFCKSF 80
>sp|P0CR16|MRD1_CRYNJ Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=MRD1 PE=3 SV=1
Length = 769
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81
L VRN+ + + L F+TYG I+EC P+ +P F++F +A A +
Sbjct: 223 LFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPL-GTAFLQFHNAEDALAAYKA 281
Query: 82 LDEFVFLGNRLKV 94
LD+ +F G L V
Sbjct: 282 LDKTIFQGRLLHV 294
>sp|P0CR17|MRD1_CRYNB Multiple RNA-binding domain-containing protein 1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=MRD1 PE=3 SV=1
Length = 769
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81
L VRN+ + + L F+TYG I+EC P+ +P F++F +A A +
Sbjct: 223 LFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPL-GTAFLQFHNAEDALAAYKA 281
Query: 82 LDEFVFLGNRLKV 94
LD+ +F G L V
Sbjct: 282 LDKTIFQGRLLHV 294
>sp|Q9PW80|IF2B3_DANRE Insulin-like growth factor 2 mRNA-binding protein 3 OS=Danio rerio
GN=igf2bp3 PE=1 SV=1
Length = 582
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
L +RN+P + L L A YG +E C+ + + D T V +++ AR A KL
Sbjct: 83 LQIRNIPPHMQWEVLDGLLAQYGTVESCEQV---NTDTETAVVNVRYGAKDQAREAMDKL 139
Query: 83 DEFVFLGNRLKVSYASQFESLADT 106
+ F+ LKVSY + AD
Sbjct: 140 NGFLMENYALKVSYIPDETAAADA 163
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
+ V+N+ ++ +LF YG I ++ + F+ F + A A +L
Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGKITSAV-LEKDSEGKLRGFGFVNFEDHAAAAKAVDEL 279
Query: 83 DEFVFLGNRLKVSYASQ-FESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVD 136
+E F G +L V A + +E L + K + E R E LA+ V N+ S+D
Sbjct: 280 NELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSID 334
>sp|Q8VIJ6|SFPQ_MOUSE Splicing factor, proline- and glutamine-rich OS=Mus musculus
GN=Sfpq PE=1 SV=1
Length = 699
Score = 37.4 bits (85), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 9 PGVRVYTV-CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFI 67
PG + YT C L V N+P+ D+ +LFA YG+ E + FI
Sbjct: 280 PGEKTYTQRC----RLFVGNLPADITEDEFKRLFAKYGEPGEVF------INKGKGFGFI 329
Query: 68 KFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLA 104
K + A AK +LD+ G +L+V +A+ +L+
Sbjct: 330 KLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALS 366
>sp|P23246|SFPQ_HUMAN Splicing factor, proline- and glutamine-rich OS=Homo sapiens
GN=SFPQ PE=1 SV=2
Length = 707
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 9 PGVRVYTV-CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFI 67
PG + YT C L V N+P+ D+ +LFA YG+ E + FI
Sbjct: 288 PGEKTYTQRC----RLFVGNLPADITEDEFKRLFAKYGEPGEVF------INKGKGFGFI 337
Query: 68 KFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLA 104
K + A AK +LD+ G +L+V +A+ +L+
Sbjct: 338 KLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALS 374
>sp|Q5ZLP8|IF2B3_CHICK Insulin-like growth factor 2 mRNA-binding protein 3 OS=Gallus
gallus GN=IGF2BP3 PE=2 SV=1
Length = 584
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
SR L +RN+P + L L A YG +E C+ + + D T V + + AR A
Sbjct: 80 SRKLQIRNIPPHLQWEVLDSLLAQYGTVENCEQV---NTDTETAVVNVTYGNKDQARQAI 136
Query: 80 RKLDEFVFLGNRLKVSY 96
KL+ F LKV+Y
Sbjct: 137 EKLNGFQLENYSLKVAY 153
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSN 74
+ D R L VRN+ +DL KLF+ YG + E P+D+ P F+ F +
Sbjct: 396 LADSGR-LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKP-KGFAFVTFMFPEH 453
Query: 75 ARFAKRKLDEFVFLGNRLKV---SYASQFESLADTKDKLETRRKEVLARLNSGRS 126
A A ++D VF G L V + + A+ ++KE + + NS S
Sbjct: 454 AVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPGSSYKKKKEAMDKANSSSS 508
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 27 NVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV 86
N+P DLL+LF +G ++ + D F++F L A A +L+
Sbjct: 723 NLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSA-RGFAFVEFNLMKEAETAMSQLEGVH 781
Query: 87 FLGNRLKVSYASQ 99
LG RL + YA Q
Sbjct: 782 LLGRRLVMQYAEQ 794
Score = 34.3 bits (77), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 9 PGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIK 68
P ++ +E+ L +RN+ +D LF+ YG +EE +++
Sbjct: 298 PEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQ 357
Query: 69 FRLFSNARFAKRKLDEFVFLGNRLKV 94
F +A A R LD+ +F G L +
Sbjct: 358 FLKKEDATRAYRSLDKQIFQGRLLHI 383
>sp|O57526|IF23B_XENLA Insulin-like growth factor 2 mRNA-binding protein 3-B OS=Xenopus
laevis GN=igf2bp3-b PE=1 SV=1
Length = 593
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
SR L +RN+P + L L A YG +E C+ + + D T V + + +AR
Sbjct: 80 SRKLQIRNIPPHLQWEVLDSLLAQYGTVENCEQV---NTDSETAVVNVTYANKEHARQGL 136
Query: 80 RKLDEFVFLGNRLKVSY 96
KL+ + LKV+Y
Sbjct: 137 EKLNGYQLENYSLKVTY 153
>sp|O73932|IF23A_XENLA Insulin-like growth factor 2 mRNA-binding protein 3-A OS=Xenopus
laevis GN=igf2bp3-a PE=1 SV=1
Length = 594
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
SR L +RN+P + L L A YG +E C+ ++ E T V + + +AR
Sbjct: 80 SRKLQIRNIPPHLQWEVLDSLLAQYGTVENCEQVNTES---ETAVVNVTYANKEHARQGL 136
Query: 80 RKLDEFVFLGNRLKVSY 96
KL+ + LKV+Y
Sbjct: 137 EKLNGYQLENYSLKVTY 153
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFA 78
E+ L +RN+ DD KLF+ YG++EE ++ F+ NA A
Sbjct: 328 ETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATA 387
Query: 79 KRKLDEFVFLGNRLKV 94
+LD+ +F G L +
Sbjct: 388 FVELDKQIFQGRLLHI 403
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
+IV+N+P D+ +LF+++G ++ + D F++F L A A +L
Sbjct: 754 IIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSA-RGFAFVEFLLPKEAENAMDQL 812
Query: 83 DEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSS----VDLG 138
LG RL + + Q D + ++E ++V ++N+ +K+ N+ +S +DL
Sbjct: 813 QGVHLLGRRLVMEFVEQ--DPEDVEQQIEKMTRKVKKQVNT--TKIANMRNSGKRKIDLD 868
Query: 139 E 139
E
Sbjct: 869 E 869
>sp|Q1JPY8|PSPC1_DANRE Paraspeckle component 1 OS=Danio rerio GN=pspc1 PE=2 SV=1
Length = 512
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 21/101 (20%)
Query: 9 PGVRVYTV-CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTD---- 63
PG + +T C L V N+PS +D KLF YGD +E F +
Sbjct: 67 PGEKTFTQRC----RLFVGNLPSDMADEDFKKLFFKYGDAKEV----------FINRDRG 112
Query: 64 VYFIKFRLFSNARFAKRKLDEFVFLGNR-LKVSYASQFESL 103
FI+ + A AK +LD V LGNR +++ +A+ +L
Sbjct: 113 FGFIRLETRTLAEIAKAELDGTV-LGNRPIRIRFATHGAAL 152
>sp|Q6DGV1|CELF4_DANRE CUGBP Elav-like family member 4 OS=Danio rerio GN=celf4 PE=2 SV=1
Length = 520
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
E R L V + C DD+ +LF ++G IEEC + D + F+K+ + A+
Sbjct: 132 GEDRKLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPDGNS-KGCAFVKYSTHAEAQA 190
Query: 78 AKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLA 119
A L + + +S ADT + RR + +A
Sbjct: 191 AISALHG----SQTMPGASSSLVVKFADTDKERTIRRMQQMA 228
>sp|Q9NZI8|IF2B1_HUMAN Insulin-like growth factor 2 mRNA-binding protein 1 OS=Homo sapiens
GN=IGF2BP1 PE=1 SV=2
Length = 577
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
SR + +RN+P + L L A YG +E C+ ++ E T V + + R A
Sbjct: 80 SRKIQIRNIPPQLRWEVLDSLLAQYGTVENCEQVNTES---ETAVVNVTYSNREQTRQAI 136
Query: 80 RKLDEFVFLGNRLKVSY 96
KL+ + LKVSY
Sbjct: 137 MKLNGHQLENHALKVSY 153
>sp|O88477|IF2B1_MOUSE Insulin-like growth factor 2 mRNA-binding protein 1 OS=Mus musculus
GN=Igf2bp1 PE=1 SV=1
Length = 577
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
SR + +RN+P + L L A YG +E C+ ++ E T V + + R A
Sbjct: 80 SRKIQIRNIPPQLRWEVLDSLLAQYGTVENCEQVNTES---ETAVVNVTYSNREQTRQAI 136
Query: 80 RKLDEFVFLGNRLKVSY 96
KL+ + LKVSY
Sbjct: 137 MKLNGHQLENHALKVSY 153
>sp|Q8CGX0|IF2B1_RAT Insulin-like growth factor 2 mRNA-binding protein 1 OS=Rattus
norvegicus GN=Igf2bp1 PE=1 SV=1
Length = 577
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
SR + +RN+P + L L A YG +E C+ ++ E T V + + R A
Sbjct: 80 SRKIQIRNIPPQLRWEVLDSLLAQYGTVENCEQVNTES---ETAVVNVTYSNREQTRQAI 136
Query: 80 RKLDEFVFLGNRLKVSY 96
KL+ + LKVSY
Sbjct: 137 MKLNGHQLENHALKVSY 153
>sp|Q04047|NONA_DROME Protein no-on-transient A OS=Drosophila melanogaster GN=nonA PE=1
SV=2
Length = 700
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 2 PRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPF 61
P ++ EP V T L V N+ + D+L ++F YG+I E + D
Sbjct: 283 PTFELEPVEVPTETKFSGRNRLYVGNLTNDITDDELREMFKPYGEISEI----FSNLD-- 336
Query: 62 TDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97
+ F+K NA AKR LD + G +L+V +A
Sbjct: 337 KNFTFLKVDYHPNAEKAKRALDGSMRKGRQLRVRFA 372
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 33.9 bits (76), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P +L LF T G I C+ M F+ F ++++ A + L
Sbjct: 112 LIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSL 171
Query: 83 DEFVFLGNRLKVSYAS-QFESLADT 106
+ RLKVSYA ES+ DT
Sbjct: 172 NGITVRNKRLKVSYARPGGESIKDT 196
>sp|O42254|IF2B1_CHICK Insulin-like growth factor 2 mRNA-binding protein 1 OS=Gallus
gallus GN=IGF2BP1 PE=1 SV=1
Length = 576
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
SR + +RN+P + L L A YG +E C+ + + D T V + + R A
Sbjct: 80 SRKIQIRNIPPQLRWEVLDGLLAQYGTVENCEQV---NTDSETAVVNVTYTNREQTRQAI 136
Query: 80 RKLDEFVFLGNRLKVSY 96
KL+ + LKVSY
Sbjct: 137 MKLNGHQLENHVLKVSY 153
>sp|O27198|Y1126_METTH UPF0348 protein MTH_1126 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=MTH_1126 PE=3 SV=1
Length = 365
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 16/84 (19%)
Query: 115 KEVLARLNSGRSKVPNIHSSVDL--GEPSLVTAPLQPNLVSEQITSWQRASSE------- 165
+EVL R+N G VP H VDL GE +L+ PL+ + + ITS RA +
Sbjct: 144 EEVLRRINLGHRVVPRPHRIVDLDKGE-TLLKGPLEED--NYVITSLARALGKLGFDFRG 200
Query: 166 ----SQRISHVNESPITRVSSDKD 185
+RI V+ + I R SD D
Sbjct: 201 KFIFVERIGGVSGTEIRRAVSDGD 224
>sp|O00425|IF2B3_HUMAN Insulin-like growth factor 2 mRNA-binding protein 3 OS=Homo sapiens
GN=IGF2BP3 PE=1 SV=2
Length = 579
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKR 80
R L +RN+P + L L YG +E C+ + + D T V + + AR A
Sbjct: 81 RKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQV---NTDSETAVVNVTYSSKDQARQALD 137
Query: 81 KLDEFVFLGNRLKVSY 96
KL+ F LKV+Y
Sbjct: 138 KLNGFQLENFTLKVAY 153
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79
S +I++N+P ++ KLF YG+I+ + + + F++F A+ A
Sbjct: 794 SSKIIIKNLPFESTIKEIRKLFTAYGEIQSVR-IPKKPNGGHRGFGFVEFLTEEEAKNAM 852
Query: 80 RKLDEFVFLGNRLKVSYASQFESLADTKDK 109
L F G L + YA Q +++ + ++K
Sbjct: 853 EALGNSHFYGRHLVLQYAEQDKNIDELREK 882
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFRLFSNARF 77
ES + VRN+ +DL K+F+ +G I E P+D D + FI + + NA
Sbjct: 359 ESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDY-DSKKSKGIAFILYLIPENAVQ 417
Query: 78 AKRKLDEFVFLGNRLKV 94
A +D VF G + V
Sbjct: 418 ALNDMDGKVFQGRLIHV 434
>sp|Q9CPN8|IF2B3_MOUSE Insulin-like growth factor 2 mRNA-binding protein 3 OS=Mus musculus
GN=Igf2bp3 PE=1 SV=1
Length = 579
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKR 80
R L +RN+P + L L YG +E C+ + + D T V + + AR A
Sbjct: 81 RKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQV---NTDSETAVVNVTYSSKDQARQALD 137
Query: 81 KLDEFVFLGNRLKVSY 96
KL+ F LKV+Y
Sbjct: 138 KLNGFQLENFTLKVAY 153
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 25 VRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE 84
V+N+P D+ +LF+++G ++ + D F++F L S A A +L
Sbjct: 716 VKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSA-RGFAFVEFLLPSEAENAMDQLQG 774
Query: 85 FVFLGNRLKVSYASQ 99
LG RL + YA Q
Sbjct: 775 VHLLGRRLVMQYAEQ 789
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P +L LF T G I C+ M F+ F +A+ A + L
Sbjct: 87 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSL 146
Query: 83 DEFVFLGNRLKVSYA-SQFESLADT 106
+ RLKVSYA ES+ DT
Sbjct: 147 NGVTVRNKRLKVSYARPGGESIKDT 171
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
LIV +P +L LF T G I C+ M F+ F +A+ A + +
Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTV 163
Query: 83 DEFVFLGNRLKVSYAS-QFESLADT 106
+ RLKVSYA ES+ DT
Sbjct: 164 NGITVRNKRLKVSYARPGGESIKDT 188
>sp|Q9UT83|MUG28_SCHPO Meiotically up-regulated gene 28 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug28 PE=1 SV=1
Length = 609
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEEC-----KPMDAEDCDPFTDVYFIKFRL 71
C+ S Y V N+PS DL +LF +G+ + K + D T FI F
Sbjct: 18 CEISIY--VGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFEN 75
Query: 72 FSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLE 111
+A A L+ F GN LKV Y E K+KLE
Sbjct: 76 KCSADNAIASLNGSSFQGNTLKVEYTHIVERY---KNKLE 112
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 12 RVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAEDCDPFTDVYFIKFR 70
R + E++ L +RN+ DDL LF +G +E+ P+D + +P +I F
Sbjct: 314 RNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNP-KGFAYIDFH 372
Query: 71 LFSNARFAKRKLDEFVFLGNRLKV 94
+A A +LD F G L V
Sbjct: 373 DADDAVRAYLELDAKPFQGRLLHV 396
>sp|Q7ZWM3|CEL3B_XENLA CUGBP Elav-like family member 3-B OS=Xenopus laevis GN=tnrc4-b PE=2
SV=1
Length = 462
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFA 78
E R L V + +D+ ++F T+G+I+EC + D F+KF+ + A+ A
Sbjct: 93 EDRKLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPDGTS-KGCAFVKFQTHTEAQAA 151
Query: 79 KRKLDEFVFLGNR-LKVSYASQFESLADTKDKLETRRKEVLA 119
L G+R L + +S ADT+ + RR + +A
Sbjct: 152 INALH-----GSRTLPGASSSLVVKFADTEKERGLRRMQQVA 188
>sp|P39684|PES4_YEAST Protein PES4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PES4 PE=4 SV=2
Length = 611
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
+ ++N+P++ DD+L F+ G I+ +A F+ ++ S++ A ++
Sbjct: 305 IFIKNLPTITTRDDILNFFSEVGPIKSIYLSNATKVKYLWA--FVTYKNSSDSEKAIKRY 362
Query: 83 DEFVFLGNRLKVSYASQFESLA 104
+ F F G +L V+ A E A
Sbjct: 363 NNFYFRGKKLLVTRAQDKEERA 384
>sp|Q75M35|OML3_ORYSJ Protein MEI2-like 3 OS=Oryza sativa subsp. japonica GN=ML3 PE=2
SV=2
Length = 955
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82
L+V N+ S DDLL++ + YGD++E F + Y ++ A A L
Sbjct: 357 LVVSNIDSSISNDDLLQMLSVYGDVKEISSSPISCTKKFVEFYDVRA-----AEEALHDL 411
Query: 83 DEFVFLGNRLKVSYASQFES 102
++ G + KV + E+
Sbjct: 412 NKGGISGPKFKVELSQHGEA 431
>sp|Q02Y14|HEMH_LACLS Ferrochelatase OS=Lactococcus lactis subsp. cremoris (strain SK11)
GN=hemH PE=3 SV=1
Length = 318
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 150 NLVSEQITSWQRASSESQRISHVNESPITRVSSDKDYFASQSMNQTVRLVREKLNKIESS 209
+L++E I +A+ + I + P++ V+ KD + +Q + +T RLV EKL E
Sbjct: 163 DLLAESIREKWQANHYDKLILSYHGIPLSYVTKKKDAYEAQCI-ETTRLVVEKLGLKEEE 221
Query: 210 TEH 212
EH
Sbjct: 222 YEH 224
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%)
Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
D LIV +P D+ LF + GDIE CK + + F+ + ++A
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 78 AKRKLDEFVFLGNRLKVSYA 97
A L+ +KVSYA
Sbjct: 96 AINTLNGLKLQTKTIKVSYA 115
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 34/80 (42%)
Query: 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARF 77
D LIV +P D+ LF + GDIE CK + + F+ + ++A
Sbjct: 36 DSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADK 95
Query: 78 AKRKLDEFVFLGNRLKVSYA 97
A L+ +KVSYA
Sbjct: 96 AINTLNGLKLQTKTIKVSYA 115
>sp|P11672|NGAL_MOUSE Neutrophil gelatinase-associated lipocalin OS=Mus musculus GN=Lcn2
PE=1 SV=1
Length = 200
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 140 PSLVTAPLQPNLVSEQITS-WQRASSESQRISHVNESPITRVSSDKDYFASQSMNQTVRL 198
PSL+T PLQP+ S+Q W + E T S+ + + S N T L
Sbjct: 31 PSLLTVPLQPDFRSDQFRGRWYVVGLAGNAVQKKTEGSFTMYSTIYELQENNSYNVTSIL 90
Query: 199 VREK 202
VR++
Sbjct: 91 VRDQ 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,177,904
Number of Sequences: 539616
Number of extensions: 3203549
Number of successful extensions: 9350
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 9298
Number of HSP's gapped (non-prelim): 116
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)