Query 026963
Match_columns 230
No_of_seqs 177 out of 1184
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:04:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.6E-21 3.5E-26 175.2 4.0 163 19-197 2-166 (352)
2 TIGR01659 sex-lethal sex-letha 99.8 5.4E-22 1.2E-26 184.0 0.6 169 19-202 106-275 (346)
3 PLN03134 glycine-rich RNA-bind 99.8 3.8E-19 8.3E-24 146.4 11.3 81 18-98 32-112 (144)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3.8E-19 8.2E-24 159.9 11.1 80 19-98 268-347 (352)
5 PF00076 RRM_1: RNA recognitio 99.7 9.2E-18 2E-22 116.8 8.6 70 23-93 1-70 (70)
6 KOG0145 RNA-binding protein EL 99.7 2.1E-18 4.5E-23 155.9 2.4 167 19-200 39-207 (360)
7 TIGR01645 half-pint poly-U bin 99.7 7.8E-18 1.7E-22 166.3 3.4 167 19-190 106-274 (612)
8 TIGR01622 SF-CC1 splicing fact 99.7 1.6E-17 3.4E-22 155.1 3.1 166 19-189 88-255 (457)
9 TIGR01628 PABP-1234 polyadenyl 99.7 5.9E-16 1.3E-20 149.1 12.5 94 19-116 284-377 (562)
10 TIGR01628 PABP-1234 polyadenyl 99.7 4.7E-17 1E-21 156.7 3.7 110 22-141 2-113 (562)
11 KOG0114 Predicted RNA-binding 99.7 9.6E-16 2.1E-20 122.6 10.5 76 19-97 17-92 (124)
12 PF14259 RRM_6: RNA recognitio 99.6 8.9E-16 1.9E-20 108.6 9.1 70 23-93 1-70 (70)
13 KOG0122 Translation initiation 99.6 4.3E-16 9.4E-21 139.2 9.1 83 17-99 186-268 (270)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.6 9.1E-16 2E-20 144.8 10.8 83 16-98 291-373 (509)
15 COG0724 RNA-binding proteins ( 99.6 1.4E-15 3.1E-20 124.3 9.6 79 20-98 115-193 (306)
16 KOG4206 Spliceosomal protein s 99.6 5.5E-16 1.2E-20 136.5 7.1 87 18-110 7-97 (221)
17 TIGR01622 SF-CC1 splicing fact 99.6 1.6E-15 3.4E-20 141.7 10.4 80 20-99 186-265 (457)
18 TIGR01659 sex-lethal sex-letha 99.6 1.9E-15 4.1E-20 140.4 10.4 80 19-98 192-273 (346)
19 smart00362 RRM_2 RNA recogniti 99.6 3.9E-15 8.3E-20 101.0 8.8 72 22-95 1-72 (72)
20 KOG0126 Predicted RNA-binding 99.6 1.7E-16 3.6E-21 137.3 2.5 85 19-103 34-118 (219)
21 smart00360 RRM RNA recognition 99.6 3.5E-15 7.6E-20 100.7 8.1 71 25-95 1-71 (71)
22 PLN03120 nucleic acid binding 99.6 4.4E-15 9.6E-20 133.8 10.0 79 20-102 4-82 (260)
23 TIGR01645 half-pint poly-U bin 99.6 4E-15 8.8E-20 147.2 10.2 80 19-98 203-282 (612)
24 KOG0107 Alternative splicing f 99.6 5.1E-15 1.1E-19 127.1 8.4 82 1-97 1-82 (195)
25 KOG0121 Nuclear cap-binding pr 99.6 6.6E-15 1.4E-19 121.5 7.4 83 19-101 35-117 (153)
26 cd00590 RRM RRM (RNA recogniti 99.6 3.6E-14 7.7E-19 96.7 9.5 74 22-96 1-74 (74)
27 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 3E-14 6.4E-19 136.3 10.4 77 17-98 272-349 (481)
28 PF13893 RRM_5: RNA recognitio 99.5 2.9E-14 6.2E-19 98.1 7.5 56 37-97 1-56 (56)
29 KOG4207 Predicted splicing fac 99.5 1.4E-14 3E-19 127.5 6.3 78 20-97 13-90 (256)
30 KOG0108 mRNA cleavage and poly 99.5 3.3E-14 7.1E-19 136.0 9.3 83 21-103 19-101 (435)
31 KOG0111 Cyclophilin-type pepti 99.5 7.9E-15 1.7E-19 130.3 4.6 83 17-99 7-89 (298)
32 TIGR01648 hnRNP-R-Q heterogene 99.5 7.4E-14 1.6E-18 137.6 11.4 78 19-97 57-135 (578)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 5.6E-14 1.2E-18 134.4 10.0 156 19-190 1-162 (481)
34 PLN03121 nucleic acid binding 99.5 1.3E-13 2.8E-18 123.2 10.1 80 19-102 4-83 (243)
35 PLN03213 repressor of silencin 99.5 1.6E-13 3.5E-18 132.7 11.0 76 19-98 9-86 (759)
36 KOG0127 Nucleolar protein fibr 99.5 1.4E-13 3E-18 134.0 8.8 89 16-105 113-201 (678)
37 KOG0109 RNA-binding protein LA 99.5 3.5E-14 7.7E-19 129.8 4.0 140 22-194 4-144 (346)
38 KOG0149 Predicted RNA-binding 99.4 1.1E-13 2.4E-18 123.1 6.5 76 21-97 13-88 (247)
39 smart00361 RRM_1 RNA recogniti 99.4 4.2E-13 9.1E-18 97.0 7.5 62 34-95 2-70 (70)
40 KOG0125 Ataxin 2-binding prote 99.4 2.3E-13 5E-18 126.0 7.6 76 20-97 96-171 (376)
41 TIGR01648 hnRNP-R-Q heterogene 99.4 8.3E-13 1.8E-17 130.2 10.2 73 20-100 233-307 (578)
42 KOG0145 RNA-binding protein EL 99.4 7.4E-13 1.6E-17 120.2 8.8 78 20-97 278-355 (360)
43 KOG0113 U1 small nuclear ribon 99.4 8.1E-13 1.7E-17 121.1 9.1 81 18-98 99-179 (335)
44 KOG0148 Apoptosis-promoting RN 99.4 4.3E-13 9.3E-18 121.8 6.9 76 22-97 64-139 (321)
45 KOG0148 Apoptosis-promoting RN 99.4 1.1E-12 2.3E-17 119.3 8.8 88 6-99 149-237 (321)
46 KOG0131 Splicing factor 3b, su 99.4 3.9E-13 8.3E-18 116.2 5.6 80 18-97 7-86 (203)
47 KOG0130 RNA-binding protein RB 99.4 7.4E-13 1.6E-17 110.5 6.0 79 19-97 71-149 (170)
48 KOG0127 Nucleolar protein fibr 99.4 1.7E-12 3.6E-17 126.5 9.3 89 18-106 290-384 (678)
49 KOG0117 Heterogeneous nuclear 99.4 1.5E-12 3.1E-17 124.4 7.7 70 21-98 260-329 (506)
50 KOG0117 Heterogeneous nuclear 99.3 4.2E-12 9.1E-17 121.3 10.5 78 20-97 83-161 (506)
51 KOG0144 RNA-binding protein CU 99.3 2.1E-13 4.5E-18 129.8 1.6 179 16-209 29-213 (510)
52 KOG0105 Alternative splicing f 99.3 1.9E-12 4.1E-17 112.8 6.3 78 19-99 5-82 (241)
53 KOG0144 RNA-binding protein CU 99.3 3.3E-12 7.1E-17 121.7 7.4 78 19-97 123-203 (510)
54 TIGR01642 U2AF_lg U2 snRNP aux 99.3 1.2E-11 2.7E-16 116.8 9.1 81 19-99 408-501 (509)
55 KOG0147 Transcriptional coacti 99.3 5.6E-12 1.2E-16 122.4 6.1 77 22-98 280-356 (549)
56 KOG0123 Polyadenylate-binding 99.3 8.8E-12 1.9E-16 117.1 7.0 74 22-98 78-151 (369)
57 KOG0110 RNA-binding protein (R 99.2 1.6E-11 3.4E-16 122.2 5.7 92 20-111 613-704 (725)
58 KOG0109 RNA-binding protein LA 99.2 2.5E-11 5.4E-16 111.3 5.8 82 8-97 63-147 (346)
59 KOG0131 Splicing factor 3b, su 99.2 3.1E-11 6.7E-16 104.5 5.7 81 18-98 94-175 (203)
60 KOG0415 Predicted peptidyl pro 99.2 5.3E-11 1.1E-15 111.7 6.6 82 16-97 235-316 (479)
61 KOG0146 RNA-binding protein ET 99.1 3.5E-11 7.5E-16 109.8 5.1 85 14-98 278-363 (371)
62 KOG4208 Nucleolar RNA-binding 99.1 1.3E-10 2.8E-15 101.9 7.6 81 19-99 48-129 (214)
63 KOG0146 RNA-binding protein ET 99.0 4.2E-10 9E-15 102.8 7.4 78 19-97 18-98 (371)
64 KOG0124 Polypyrimidine tract-b 99.0 2.7E-10 5.8E-15 107.5 5.0 77 21-97 114-190 (544)
65 KOG0110 RNA-binding protein (R 99.0 8.4E-10 1.8E-14 110.0 7.7 77 22-98 517-596 (725)
66 KOG0123 Polyadenylate-binding 99.0 1.1E-09 2.3E-14 103.1 8.0 73 21-99 2-74 (369)
67 KOG0132 RNA polymerase II C-te 99.0 1.3E-09 2.9E-14 109.7 7.4 74 20-99 421-494 (894)
68 KOG4661 Hsp27-ERE-TATA-binding 98.8 7.5E-09 1.6E-13 102.1 6.7 79 20-98 405-483 (940)
69 KOG4212 RNA-binding protein hn 98.8 9.1E-09 2E-13 98.9 6.6 75 18-97 534-608 (608)
70 KOG0533 RRM motif-containing p 98.8 2E-08 4.4E-13 90.2 8.3 80 17-97 80-159 (243)
71 KOG1548 Transcription elongati 98.7 8.4E-09 1.8E-13 96.4 4.5 79 19-98 133-219 (382)
72 KOG0124 Polypyrimidine tract-b 98.7 2.1E-08 4.6E-13 94.9 6.7 77 21-97 211-287 (544)
73 KOG0153 Predicted RNA-binding 98.7 3.2E-08 7E-13 92.6 7.2 74 20-99 228-302 (377)
74 KOG4212 RNA-binding protein hn 98.7 3.8E-08 8.2E-13 94.8 7.9 77 20-97 44-121 (608)
75 KOG1457 RNA binding protein (c 98.7 6.4E-08 1.4E-12 86.7 8.1 78 20-97 34-115 (284)
76 KOG4205 RNA-binding protein mu 98.7 1.9E-08 4.1E-13 93.1 4.8 82 19-101 5-86 (311)
77 KOG4209 Splicing factor RNPS1, 98.7 4.4E-08 9.6E-13 87.1 6.3 78 19-97 100-177 (231)
78 KOG4660 Protein Mei2, essentia 98.6 2E-08 4.4E-13 98.1 3.8 70 19-93 74-143 (549)
79 KOG0151 Predicted splicing reg 98.6 5.7E-08 1.2E-12 97.5 6.1 84 14-97 167-254 (877)
80 KOG0106 Alternative splicing f 98.6 4.3E-08 9.2E-13 86.8 3.9 70 21-98 2-71 (216)
81 KOG1190 Polypyrimidine tract-b 98.6 1.8E-07 3.8E-12 89.4 7.8 74 20-98 297-371 (492)
82 KOG4454 RNA binding protein (R 98.5 3.8E-08 8.2E-13 87.8 2.0 79 17-97 6-84 (267)
83 PF04059 RRM_2: RNA recognitio 98.5 9.8E-07 2.1E-11 69.3 9.4 77 21-97 2-84 (97)
84 KOG0116 RasGAP SH3 binding pro 98.4 3.8E-07 8.2E-12 87.5 6.7 77 20-97 288-364 (419)
85 KOG4205 RNA-binding protein mu 98.4 5.2E-07 1.1E-11 83.6 6.1 78 19-97 96-173 (311)
86 KOG0226 RNA-binding proteins [ 98.3 1.1E-06 2.5E-11 79.7 5.3 78 20-97 190-267 (290)
87 PF11608 Limkain-b1: Limkain b 98.3 2.7E-06 5.8E-11 66.0 6.3 76 21-106 3-83 (90)
88 KOG0120 Splicing factor U2AF, 98.2 1.1E-06 2.4E-11 85.9 4.3 78 20-97 289-366 (500)
89 KOG1995 Conserved Zn-finger pr 98.2 1.1E-06 2.4E-11 82.4 4.0 79 19-97 65-151 (351)
90 KOG0147 Transcriptional coacti 98.1 1.2E-06 2.5E-11 85.9 2.4 76 21-97 180-255 (549)
91 KOG4210 Nuclear localization s 98.1 2.5E-06 5.4E-11 78.0 3.3 79 19-98 183-262 (285)
92 KOG4206 Spliceosomal protein s 97.9 4.4E-05 9.5E-10 68.0 8.4 76 17-97 143-219 (221)
93 KOG2314 Translation initiation 97.9 4E-05 8.7E-10 76.0 7.5 76 18-94 56-138 (698)
94 COG5175 MOT2 Transcriptional r 97.8 3.4E-05 7.3E-10 72.9 6.5 77 21-97 115-200 (480)
95 KOG0106 Alternative splicing f 97.8 1.3E-05 2.8E-10 71.1 2.9 79 11-97 89-168 (216)
96 KOG1548 Transcription elongati 97.7 9.2E-05 2E-09 69.8 7.1 74 20-97 265-349 (382)
97 KOG1457 RNA binding protein (c 97.7 4.6E-05 9.9E-10 68.6 4.1 65 20-88 210-274 (284)
98 KOG0120 Splicing factor U2AF, 97.5 0.00022 4.8E-09 70.0 7.5 64 35-98 424-490 (500)
99 PF08777 RRM_3: RNA binding mo 97.5 0.00059 1.3E-08 53.9 8.2 70 22-97 3-77 (105)
100 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00027 5.9E-09 49.4 5.3 53 20-79 1-53 (53)
101 KOG2202 U2 snRNP splicing fact 97.5 6.2E-05 1.3E-09 68.3 2.4 64 35-99 83-147 (260)
102 KOG1855 Predicted RNA-binding 97.5 8.4E-05 1.8E-09 71.7 3.3 77 18-94 229-318 (484)
103 KOG1190 Polypyrimidine tract-b 97.4 0.00032 6.9E-09 67.6 6.8 85 9-97 402-488 (492)
104 KOG3152 TBP-binding protein, a 97.4 0.00021 4.4E-09 65.2 5.2 88 20-108 74-181 (278)
105 KOG4211 Splicing factor hnRNP- 97.4 0.00029 6.3E-09 68.8 6.4 79 15-97 5-83 (510)
106 KOG4849 mRNA cleavage factor I 97.2 0.00058 1.3E-08 65.0 5.6 85 13-97 73-160 (498)
107 KOG1456 Heterogeneous nuclear 97.2 0.0015 3.3E-08 62.6 8.0 75 19-98 286-361 (494)
108 KOG4211 Splicing factor hnRNP- 97.1 0.0017 3.6E-08 63.6 7.7 75 21-97 104-179 (510)
109 KOG1456 Heterogeneous nuclear 97.1 0.0018 3.9E-08 62.1 7.7 74 20-98 120-197 (494)
110 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0019 4.1E-08 51.0 5.9 77 19-97 5-89 (100)
111 KOG0128 RNA-binding protein SA 97.0 9.5E-05 2.1E-09 75.9 -1.8 88 21-108 668-755 (881)
112 PF03467 Smg4_UPF3: Smg-4/UPF3 96.9 0.0023 5E-08 54.8 6.5 82 18-99 5-97 (176)
113 KOG4307 RNA binding protein RB 96.9 0.0024 5.1E-08 65.2 7.1 75 22-96 869-943 (944)
114 PF15023 DUF4523: Protein of u 96.8 0.0051 1.1E-07 52.3 7.4 75 18-100 84-162 (166)
115 KOG1996 mRNA splicing factor [ 96.7 0.0031 6.8E-08 58.9 6.1 64 34-97 300-364 (378)
116 KOG0115 RNA-binding protein p5 96.7 0.0014 3E-08 59.8 3.5 68 21-89 32-99 (275)
117 KOG2193 IGF-II mRNA-binding pr 96.7 0.0014 3.1E-08 63.6 3.4 150 21-189 2-156 (584)
118 KOG0112 Large RNA-binding prot 96.5 0.0029 6.2E-08 65.7 4.8 74 18-97 453-528 (975)
119 KOG0128 RNA-binding protein SA 96.4 0.0013 2.8E-08 67.8 1.6 76 21-97 737-812 (881)
120 KOG0129 Predicted RNA-binding 96.3 0.013 2.8E-07 57.8 7.8 80 2-81 340-432 (520)
121 PF04847 Calcipressin: Calcipr 96.3 0.011 2.4E-07 51.2 6.5 60 33-98 8-69 (184)
122 KOG0105 Alternative splicing f 96.1 0.013 2.9E-07 51.8 6.1 61 22-89 117-177 (241)
123 KOG1365 RNA-binding protein Fu 96.1 0.0074 1.6E-07 58.2 4.7 88 20-112 280-370 (508)
124 PF08952 DUF1866: Domain of un 96.1 0.03 6.4E-07 47.3 7.6 71 18-97 25-104 (146)
125 KOG4676 Splicing factor, argin 96.0 0.0096 2.1E-07 57.4 4.7 76 21-97 8-86 (479)
126 PF08675 RNA_bind: RNA binding 95.8 0.037 7.9E-07 43.0 6.6 53 23-84 12-64 (87)
127 KOG2068 MOT2 transcription fac 95.7 0.0042 9.2E-08 58.3 1.1 76 21-97 78-160 (327)
128 KOG0129 Predicted RNA-binding 95.6 0.028 6E-07 55.6 6.3 79 15-96 254-337 (520)
129 KOG2193 IGF-II mRNA-binding pr 94.8 0.0013 2.9E-08 63.8 -5.2 78 19-99 79-156 (584)
130 PF10309 DUF2414: Protein of u 94.6 0.15 3.2E-06 37.3 6.2 53 21-82 6-62 (62)
131 KOG1365 RNA-binding protein Fu 94.3 0.1 2.2E-06 50.6 6.2 60 22-82 163-226 (508)
132 KOG2416 Acinus (induces apopto 94.3 0.062 1.3E-06 54.3 4.8 73 19-97 443-519 (718)
133 PF11767 SET_assoc: Histone ly 94.2 0.16 3.4E-06 37.4 5.7 54 32-94 12-65 (66)
134 KOG4307 RNA binding protein RB 93.2 0.14 3E-06 52.8 5.1 78 19-97 433-511 (944)
135 KOG4285 Mitotic phosphoprotein 93.0 0.31 6.7E-06 45.9 6.8 70 20-97 197-267 (350)
136 KOG4574 RNA-binding protein (c 92.6 0.074 1.6E-06 55.5 2.4 70 23-98 301-372 (1007)
137 KOG4660 Protein Mei2, essentia 92.6 0.25 5.5E-06 49.3 5.9 54 44-97 413-470 (549)
138 KOG0112 Large RNA-binding prot 92.3 0.046 1E-06 57.1 0.5 78 19-97 371-448 (975)
139 PF07576 BRAP2: BRCA1-associat 90.8 3.2 7E-05 33.2 9.5 76 20-97 12-92 (110)
140 KOG2591 c-Mpl binding protein, 90.1 0.44 9.6E-06 48.0 4.8 65 22-93 177-245 (684)
141 KOG2135 Proteins containing th 88.3 0.32 6.9E-06 48.1 2.4 72 20-98 372-444 (526)
142 KOG2318 Uncharacterized conser 88.2 2.1 4.6E-05 43.4 8.0 83 17-99 171-307 (650)
143 KOG4210 Nuclear localization s 84.6 0.55 1.2E-05 43.2 1.8 79 19-97 87-165 (285)
144 COG0724 RNA-binding proteins ( 84.5 1.4 3.1E-05 35.8 4.0 80 18-97 223-302 (306)
145 KOG0804 Cytoplasmic Zn-finger 83.0 3.7 8E-05 40.6 6.7 76 20-97 74-153 (493)
146 KOG2253 U1 snRNP complex, subu 82.3 0.99 2.2E-05 46.1 2.7 78 9-95 29-106 (668)
147 PF03880 DbpA: DbpA RNA bindin 79.5 4.5 9.8E-05 29.5 4.7 58 31-97 12-74 (74)
148 PF02714 DUF221: Domain of unk 70.0 5 0.00011 36.2 3.5 34 65-100 1-34 (325)
149 COG5638 Uncharacterized conser 66.6 21 0.00045 35.5 7.0 88 17-104 143-302 (622)
150 KOG4365 Uncharacterized conser 66.5 1.9 4E-05 42.8 -0.1 78 21-99 4-81 (572)
151 KOG4019 Calcineurin-mediated s 59.6 9.2 0.0002 33.8 3.0 73 20-98 10-88 (193)
152 PF03468 XS: XS domain; Inter 53.5 17 0.00037 29.3 3.4 49 22-73 10-67 (116)
153 KOG2891 Surface glycoprotein [ 48.1 23 0.0005 33.6 3.8 79 20-98 149-266 (445)
154 KOG4483 Uncharacterized conser 48.0 29 0.00063 34.3 4.6 54 21-81 392-446 (528)
155 PF10567 Nab6_mRNP_bdg: RNA-re 42.9 33 0.00073 32.3 4.0 56 20-75 15-77 (309)
156 KOG4454 RNA binding protein (R 40.6 8.1 0.00017 35.3 -0.4 162 22-194 82-260 (267)
157 KOG2295 C2H2 Zn-finger protein 38.0 6.5 0.00014 39.9 -1.5 77 22-98 233-309 (648)
158 PF15513 DUF4651: Domain of un 37.1 64 0.0014 23.7 3.9 35 35-70 9-43 (62)
159 KOG4008 rRNA processing protei 35.1 28 0.0006 32.1 2.2 38 15-52 35-72 (261)
160 PRK11230 glycolate oxidase sub 33.8 1.2E+02 0.0026 29.9 6.5 63 20-83 189-255 (499)
161 KOG4676 Splicing factor, argin 33.1 10 0.00022 37.2 -1.0 69 20-93 151-219 (479)
162 COG5507 Uncharacterized conser 31.6 54 0.0012 26.6 3.0 22 61-82 65-86 (117)
163 PRK08559 nusG transcription an 29.1 1.3E+02 0.0028 24.9 5.1 50 35-89 23-74 (153)
164 KOG0115 RNA-binding protein p5 26.7 54 0.0012 30.5 2.6 28 72-99 4-31 (275)
165 COG5193 LHP1 La protein, small 25.7 34 0.00075 33.6 1.2 59 21-79 175-243 (438)
166 PF07292 NID: Nmi/IFP 35 domai 22.5 52 0.0011 25.5 1.4 23 19-41 51-73 (88)
167 PLN02805 D-lactate dehydrogena 21.7 3.2E+02 0.0069 27.6 7.1 51 32-83 278-332 (555)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.83 E-value=1.6e-21 Score=175.19 Aligned_cols=163 Identities=20% Similarity=0.240 Sum_probs=127.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
+..+|||+|||..++++||+++|++||+|.+|+|+.|+.+++++|||||+|.+.++|..|++.|||..+.|++|+|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963 99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP 176 (230)
Q Consensus 99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (230)
+.... .+ . .++- .|+|..+.|..... +...| .+..+.+++-+.+...++ .+|..|....|+.
T Consensus 82 ~~~~~--~~----~------~~l~v~~l~~~~~~~~l~~~f~~~G---~i~~~~~~~~~~~~~~~g-~~fv~f~~~~~A~ 145 (352)
T TIGR01661 82 PSSDS--IK----G------ANLYVSGLPKTMTQHELESIFSPFG---QIITSRILSDNVTGLSKG-VGFIRFDKRDEAD 145 (352)
T ss_pred ccccc--cc----c------ceEEECCccccCCHHHHHHHHhccC---CEEEEEEEecCCCCCcCc-EEEEEECCHHHHH
Confidence 32211 00 0 1122 58888888887776 77777 444445444444555677 6788888888887
Q ss_pred ceeeccCcccccccCchhhHH
Q 026963 177 ITRVSSDKDYFASQSMNQTVR 197 (230)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~v~ 197 (230)
.+.-.+|...+.+...+..|+
T Consensus 146 ~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 146 RAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred HHHHHhCCCccCCCceeEEEE
Confidence 776666666666655554444
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.83 E-value=5.4e-22 Score=183.97 Aligned_cols=169 Identities=22% Similarity=0.231 Sum_probs=143.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
..++|||+|||+++++++|+++|+.||+|++|+|+.|..|++++|||||+|.+.++|..|++.|||..+.|++|+|+||.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCCc
Q 026963 99 QFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPI 177 (230)
Q Consensus 99 e~Es~~d~r~Kl~~rr~ev~~Rl~~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (230)
+... ... ..+ -.=.|++..+++.+.++ |..+| .+.++.+++.+.+...++ .+|+.|....+|..
T Consensus 186 p~~~--~~~----~~~-----lfV~nLp~~vtee~L~~~F~~fG---~V~~v~i~~d~~tg~~kG-~aFV~F~~~e~A~~ 250 (346)
T TIGR01659 186 PGGE--SIK----DTN-----LYVTNLPRTITDDQLDTIFGKYG---QIVQKNILRDKLTGTPRG-VAFVRFNKREEAQE 250 (346)
T ss_pred cccc--ccc----cce-----eEEeCCCCcccHHHHHHHHHhcC---CEEEEEEeecCCCCccce-EEEEEECCHHHHHH
Confidence 3111 000 000 11258999999888887 88888 555566666666666777 79999999999999
Q ss_pred eeeccCcccccccCchhhHHHHHHH
Q 026963 178 TRVSSDKDYFASQSMNQTVRLVREK 202 (230)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~v~~v~~~ 202 (230)
+--..|..+|.+.+.+.+|++..++
T Consensus 251 Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 251 AISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred HHHHhCCCccCCCceeEEEEECCcc
Confidence 9999999999999999999988765
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=3.8e-19 Score=146.37 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
+.+++|||+|||+.+++++|+++|++||+|.+|.++.|..|++++|||||+|.+.++|+.|++.|||..+.|++|+|++|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 112 ~ 112 (144)
T PLN03134 112 N 112 (144)
T ss_pred C
Confidence 4
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.79 E-value=3.8e-19 Score=159.88 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.+.+|||+|||+.+++++|.++|++||.|++|+|+.|+.|+.++|||||+|.+.++|..|+..|||..|.|++|+|+|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999994
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=9.2e-18 Score=116.76 Aligned_cols=70 Identities=24% Similarity=0.367 Sum_probs=67.6
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 23 LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
|||+|||..+++++|.++|++||+|..+.+..+ .++.++|+|||+|.+.++|..|++.|||+.+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 6799999999999999999999999999999999986
No 6
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=2.1e-18 Score=155.93 Aligned_cols=167 Identities=22% Similarity=0.232 Sum_probs=140.3
Q ss_pred CC-CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ES-RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS-~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
++ ++|+|..||..+|+|||+.||+..|+|++|++++|+.||.+-||+||.|.+++||++|+..|||-.++.+.|+|+||
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 44 47999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963 98 SQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP 176 (230)
Q Consensus 98 ~e~Es~~d~r~Kl~~rr~ev~~Rl~~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (230)
++.- +..+.. .-+| .++|+.|.++.-.. |..+| -++-.-.|..+.+--+|+ +.|..|....+++
T Consensus 119 RPSs--~~Ik~a----NLYv-----SGlPktMtqkelE~iFs~fG---rIItSRiL~dqvtg~srG-VgFiRFDKr~EAe 183 (360)
T KOG0145|consen 119 RPSS--DSIKDA----NLYV-----SGLPKTMTQKELEQIFSPFG---RIITSRILVDQVTGLSRG-VGFIRFDKRIEAE 183 (360)
T ss_pred cCCh--hhhccc----ceEE-----ecCCccchHHHHHHHHHHhh---hhhhhhhhhhcccceecc-eeEEEecchhHHH
Confidence 4321 111111 1222 37899998877544 88888 444445556677777899 9999999999999
Q ss_pred ceeeccCcccccccCchhhHHHHH
Q 026963 177 ITRVSSDKDYFASQSMNQTVRLVR 200 (230)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~v~~v~ 200 (230)
.+--+-|-.-=+|.+-+-||||--
T Consensus 184 ~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 184 EAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred HHHHhccCCCCCCCCCCeEEEecC
Confidence 999999999889999999999853
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.69 E-value=7.8e-18 Score=166.30 Aligned_cols=167 Identities=10% Similarity=0.073 Sum_probs=123.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
...+|||+|||+.+++++|+++|++||+|.+|+++.|+.|++++|||||+|.+.++|..|++.|||..|.|+.|+|.++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963 99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP 176 (230)
Q Consensus 99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (230)
...........+... .....++- .|++..+++...++ |..+| .+.++.+.++.-....|| ..|..|+...++.
T Consensus 186 ~~p~a~~~~~~~~~~-~~~~~rLfVgnLp~~vteedLk~lFs~FG---~I~svrl~~D~~tgksKG-fGFVeFe~~e~A~ 260 (612)
T TIGR01645 186 NMPQAQPIIDMVQEE-AKKFNRIYVASVHPDLSETDIKSVFEAFG---EIVKCQLARAPTGRGHKG-YGFIEYNNLQSQS 260 (612)
T ss_pred ccccccccccccccc-ccccceEEeecCCCCCCHHHHHHHHhhcC---CeeEEEEEecCCCCCcCC-eEEEEECCHHHHH
Confidence 221111100000000 00011222 57888887777766 78888 455555555555556777 6788888877777
Q ss_pred ceeeccCccccccc
Q 026963 177 ITRVSSDKDYFASQ 190 (230)
Q Consensus 177 ~~~~~~~~~~~~~~ 190 (230)
.+--.+|.--+.+.
T Consensus 261 kAI~amNg~elgGr 274 (612)
T TIGR01645 261 EAIASMNLFDLGGQ 274 (612)
T ss_pred HHHHHhCCCeeCCe
Confidence 77777775544433
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.67 E-value=1.6e-17 Score=155.08 Aligned_cols=166 Identities=11% Similarity=0.071 Sum_probs=115.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++++|||+|||..+++++|+++|++||+|.+|.++.|+.+++++|||||+|.+.++|..|+. |+|..|.|++|.|.+++
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 57799999999999999999999999999999999999999999999999999999999995 99999999999999874
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963 99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP 176 (230)
Q Consensus 99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (230)
...............-......|- .|++..+.+...++ |..+| .+..+.++...-+...++ .+|..|....++.
T Consensus 167 ~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G---~i~~v~~~~d~~~g~~~g-~afV~f~~~e~A~ 242 (457)
T TIGR01622 167 AEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFG---DIEDVQLHRDPETGRSKG-FGFIQFHDAEEAK 242 (457)
T ss_pred hhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC---CeEEEEEEEcCCCCccce-EEEEEECCHHHHH
Confidence 211110000000000000000111 46777777777666 77777 333344333333334555 5777777777777
Q ss_pred ceeeccCcccccc
Q 026963 177 ITRVSSDKDYFAS 189 (230)
Q Consensus 177 ~~~~~~~~~~~~~ 189 (230)
.+.-.+|...|.+
T Consensus 243 ~A~~~l~g~~i~g 255 (457)
T TIGR01622 243 EALEVMNGFELAG 255 (457)
T ss_pred HHHHhcCCcEECC
Confidence 7666666655544
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.66 E-value=5.9e-16 Score=149.07 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=85.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.+.+|||+|||+.+++++|+++|++||+|++|+++.| .++.++|||||+|.+.++|..|+..|||..|.|++|.|.||
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a- 361 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA- 361 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec-
Confidence 4578999999999999999999999999999999998 67999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHH
Q 026963 99 QFESLADTKDKLETRRKE 116 (230)
Q Consensus 99 e~Es~~d~r~Kl~~rr~e 116 (230)
.++++.+..+..+...
T Consensus 362 --~~k~~~~~~~~~~~~q 377 (562)
T TIGR01628 362 --QRKEQRRAHLQDQFMQ 377 (562)
T ss_pred --cCcHHHHHHHHHHHHH
Confidence 6666666666655443
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.65 E-value=4.7e-17 Score=156.67 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=90.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCCCC
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFE 101 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~E 101 (230)
+|||+|||..+++++|+++|++||+|.+|+++.|..|++++|||||.|.+.++|..|+..||+..+.|++|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999984211
Q ss_pred ChHHHHHHHHHHHHHHHHHh-hcCCCCCCCcccccc-cCCCC
Q 026963 102 SLADTKDKLETRRKEVLARL-NSGRSKVPNIHSSVD-LGEPS 141 (230)
Q Consensus 102 s~~d~r~Kl~~rr~ev~~Rl-~~n~~~~~~~~~~~~-~~~~g 141 (230)
+. + +... ..+ =.|++..+++.+..+ |...|
T Consensus 82 ~~---~------~~~~-~~vfV~nLp~~~~~~~L~~~F~~~G 113 (562)
T TIGR01628 82 SL---R------RSGV-GNIFVKNLDKSVDNKALFDTFSKFG 113 (562)
T ss_pred cc---c------ccCC-CceEEcCCCccCCHHHHHHHHHhcC
Confidence 11 0 0000 011 147788777777666 77777
No 11
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=9.6e-16 Score=122.59 Aligned_cols=76 Identities=22% Similarity=0.356 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++-|||+|||..++.+|.++||++||+|..++|..++.| +|.|||.|+++.+|.+|++.|+|+.+.++.|.|-|-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3788999999999999999999999999999999887654 799999999999999999999999999999999987
No 12
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=8.9e-16 Score=108.64 Aligned_cols=70 Identities=21% Similarity=0.403 Sum_probs=65.5
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 23 LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
|||+|||+.+++++|.++|+.||.|..+.+..++. +.++|+|||+|.+.++|..|++.++|..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 89999999999999999999999999999999874
No 13
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=4.3e-16 Score=139.19 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=79.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
.+.+.+|-|.|||.+++++||.+||-+||.|..|.+..|+.||.++|||||.|.+.++|.+||+.|||+-++.-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
+.+
T Consensus 266 skP 268 (270)
T KOG0122|consen 266 SKP 268 (270)
T ss_pred cCC
Confidence 943
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.64 E-value=9.1e-16 Score=144.82 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=78.9
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963 16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (230)
Q Consensus 16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs 95 (230)
+.++.++|||+|||..+++++|.++|+.||+|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 291 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~ 370 (509)
T TIGR01642 291 VLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQ 370 (509)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 026963 96 YAS 98 (230)
Q Consensus 96 yA~ 98 (230)
+|.
T Consensus 371 ~a~ 373 (509)
T TIGR01642 371 RAC 373 (509)
T ss_pred ECc
Confidence 983
No 15
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.63 E-value=1.4e-15 Score=124.26 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=76.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
..+|||+|||..+++++|.++|.+||+|..+.+..++.++.++|||||.|.+.++|..|+..|+|..|.|++|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999974
No 16
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.62 E-value=5.5e-16 Score=136.49 Aligned_cols=87 Identities=24% Similarity=0.389 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----hhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLK----LFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~----LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
+++.+|||+||++....+||+. |||+||+|.+|.+.+. .+.+|.|||.|.+.+.|..|+++|+|+.|+|++|+
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4566999999999887777665 9999999999999865 78999999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHH
Q 026963 94 VSYASQFESLADTKDKL 110 (230)
Q Consensus 94 VsyA~e~Es~~d~r~Kl 110 (230)
|+|| .+.++...+.
T Consensus 84 iqyA---~s~sdii~~~ 97 (221)
T KOG4206|consen 84 IQYA---KSDSDIIAQA 97 (221)
T ss_pred eecc---cCccchhhcc
Confidence 9999 6777666653
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.62 E-value=1.6e-15 Score=141.65 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=77.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e 99 (230)
+.+|||+|||..+++++|.++|++||+|..|.++.+..+++++|||||+|.+.++|..|+..|||..+.|++|+|+||.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999853
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.62 E-value=1.9e-15 Score=140.40 Aligned_cols=80 Identities=25% Similarity=0.318 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC--ceeEEEe
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVSY 96 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G--r~L~Vsy 96 (230)
.+++|||.|||+.+++++|+++|++||+|+.|+|+.|+.|++++|||||+|.+.++|..|++.|||..|.| ++|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999987 6899999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 272 a~ 273 (346)
T TIGR01659 272 AE 273 (346)
T ss_pred CC
Confidence 94
No 19
>smart00362 RRM_2 RNA recognition motif.
Probab=99.61 E-value=3.9e-15 Score=101.01 Aligned_cols=72 Identities=28% Similarity=0.350 Sum_probs=67.9
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs 95 (230)
+|||+|||...++++|.++|.+||+|..+.+..++ +.++|+|||.|.+.++|..|+..++|..|.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7789999999999999999999999999999999874
No 20
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.7e-16 Score=137.29 Aligned_cols=85 Identities=19% Similarity=0.355 Sum_probs=80.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.|.+|||+|||...|+.||..+||+||+|.+|.+++|+.||+++||||.+|+|..+-..|+..|||..+.|+.|+|+.--
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCh
Q 026963 99 QFESL 103 (230)
Q Consensus 99 e~Es~ 103 (230)
.+..+
T Consensus 114 ~Yk~p 118 (219)
T KOG0126|consen 114 NYKKP 118 (219)
T ss_pred cccCC
Confidence 55444
No 21
>smart00360 RRM RNA recognition motif.
Probab=99.61 E-value=3.5e-15 Score=100.67 Aligned_cols=71 Identities=27% Similarity=0.374 Sum_probs=67.8
Q ss_pred EcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963 25 VRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (230)
Q Consensus 25 V~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs 95 (230)
|+|||..+++++|..+|++||+|..+.+..++.++.++|+|||+|.+.++|..|++.|+|..|.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988889999999999999999999999999999999999874
No 22
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=4.4e-15 Score=133.77 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=72.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e 99 (230)
.++|||+|||+.++++||+++|+.||+|++|.|+.+.. .+|||||+|++.++|..|+ .|||..|.|++|.|..++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999998853 5799999999999999999 5999999999999999975
Q ss_pred CCC
Q 026963 100 FES 102 (230)
Q Consensus 100 ~Es 102 (230)
++.
T Consensus 80 ~~~ 82 (260)
T PLN03120 80 YQL 82 (260)
T ss_pred CCC
Confidence 543
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=4e-15 Score=147.20 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
...+|||+|||..+++++|+++|+.||+|++|+++.|+.+++++|||||.|++.++|..|+..|||+.+.|+.|+|.+|.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999983
No 24
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=5.1e-15 Score=127.13 Aligned_cols=82 Identities=27% Similarity=0.369 Sum_probs=75.0
Q ss_pred CCCCCCCCCcceeeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHH
Q 026963 1 MPRYKDEPPGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKR 80 (230)
Q Consensus 1 ~~~~~~~~~avkvytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~ 80 (230)
||||.++... +.|||+||+..+++.||+.+|+.||+|.+|-|... +.|||||+|+++.||..|++
T Consensus 1 m~r~~~~~~~----------~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr 65 (195)
T KOG0107|consen 1 MPRYRDRNGN----------TKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVR 65 (195)
T ss_pred CCcccccCCC----------ceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHh
Confidence 8888876554 45789999999999999999999999999998875 46999999999999999999
Q ss_pred HhcCceeCCceeEEEec
Q 026963 81 KLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 81 ~LnG~~f~Gr~L~VsyA 97 (230)
.|||+.|.|..++|+++
T Consensus 66 ~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 66 YLDGKDICGSRIRVELS 82 (195)
T ss_pred hcCCccccCceEEEEee
Confidence 99999999999999998
No 25
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=6.6e-15 Score=121.51 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=79.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.|.+|||+||+..++|+.|++||+..|+|..|.+-.|+.+..+.||+||.|...++|..|++.++|+.+..++|+|+|-+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCC
Q 026963 99 QFE 101 (230)
Q Consensus 99 e~E 101 (230)
.++
T Consensus 115 GF~ 117 (153)
T KOG0121|consen 115 GFV 117 (153)
T ss_pred cch
Confidence 543
No 26
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.56 E-value=3.6e-14 Score=96.71 Aligned_cols=74 Identities=26% Similarity=0.387 Sum_probs=69.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
+|+|+|||..+++++|.++|+.||+|..+.+..++.+ .++|+|||.|.+.++|..|++.++|..|.|+.++|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987654 7799999999999999999999999999999999975
No 27
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.53 E-value=3e-14 Score=136.26 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=71.8
Q ss_pred cCCCCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963 17 CDESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (230)
Q Consensus 17 ~~eS~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs 95 (230)
+.++.+|||+|||+ .+++++|++||+.||.|.+|+++.+. +|||||+|.+.++|..|+..|||..|.|++|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45778999999997 58999999999999999999999863 6999999999999999999999999999999999
Q ss_pred ecC
Q 026963 96 YAS 98 (230)
Q Consensus 96 yA~ 98 (230)
++.
T Consensus 347 ~s~ 349 (481)
T TIGR01649 347 PSK 349 (481)
T ss_pred Ecc
Confidence 984
No 28
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.53 E-value=2.9e-14 Score=98.13 Aligned_cols=56 Identities=34% Similarity=0.561 Sum_probs=51.8
Q ss_pred HHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 37 LLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 37 L~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
|+++|++||+|+++.+..+. +|+|||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998763 589999999999999999999999999999999997
No 29
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.52 E-value=1.4e-14 Score=127.55 Aligned_cols=78 Identities=24% Similarity=0.279 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
-..|.|-||..-++.++|..+|.+||.|-+|.|+.|+-|+.++|||||.|.+..+|+.|+++|||.++.|+.|+|++|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999999998
No 30
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.52 E-value=3.3e-14 Score=136.05 Aligned_cols=83 Identities=25% Similarity=0.351 Sum_probs=79.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCCC
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQF 100 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~ 100 (230)
..+||+|+|..+++++|..+|+..|.|.+++++.|++||+++|||||+|.+.++|..|++.|||.+|.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999644
Q ss_pred CCh
Q 026963 101 ESL 103 (230)
Q Consensus 101 Es~ 103 (230)
...
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 433
No 31
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=7.9e-15 Score=130.35 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=79.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
++.-++|||++|...+++.-|..-|-+||.|.+|.++.|+++++.||||||+|+..|||..||..||+.+++|+.|+|.|
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
|.+
T Consensus 87 AkP 89 (298)
T KOG0111|consen 87 AKP 89 (298)
T ss_pred cCC
Confidence 954
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.51 E-value=7.4e-14 Score=137.62 Aligned_cols=78 Identities=23% Similarity=0.238 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-CceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr~L~VsyA 97 (230)
...+|||+|||+.+++++|.++|++||+|.+|+|+.| .+++++|||||+|.+.++|..|++.|||..+. |+.|.|+.+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3578999999999999999999999999999999999 78999999999999999999999999999996 788877766
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.51 E-value=5.6e-14 Score=134.36 Aligned_cols=156 Identities=11% Similarity=0.084 Sum_probs=103.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHH--hcCceeCCceeEEEe
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRK--LDEFVFLGNRLKVSY 96 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~--LnG~~f~Gr~L~Vsy 96 (230)
+|++|||+|||+.++++||+++|++||+|.+|.++++ +|||||+|++.++|..|++. +++..+.|++|+|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5899999999999999999999999999999999864 58999999999999999997 478999999999999
Q ss_pred cCCCC--ChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhccccccccccccc
Q 026963 97 ASQFE--SLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHV 172 (230)
Q Consensus 97 A~e~E--s~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (230)
+...+ +.... ........-...+- .|++..+++....+ +..+| .++.+.+.+ .+.++ .+|..|...
T Consensus 75 s~~~~~~~~~~~--~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G---~V~~v~i~~----~~~~~-~afVef~~~ 144 (481)
T TIGR01649 75 STSQEIKRDGNS--DFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYG---KVLRIVTFT----KNNVF-QALVEFESV 144 (481)
T ss_pred cCCcccccCCCC--cccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccC---CEEEEEEEe----cCCce-EEEEEECCH
Confidence 95322 11000 00000000000111 35555555555544 77777 333333322 11222 467777777
Q ss_pred CCCCceeeccCccccccc
Q 026963 173 NESPITRVSSDKDYFASQ 190 (230)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~ 190 (230)
.+|..+.-.+|-..|.+.
T Consensus 145 ~~A~~A~~~Lng~~i~~~ 162 (481)
T TIGR01649 145 NSAQHAKAALNGADIYNG 162 (481)
T ss_pred HHHHHHHHHhcCCcccCC
Confidence 777766666666655443
No 34
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.3e-13 Score=123.17 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++.+|||+||++.++++||+++|+.||+|.+|.|+.|. ..+|||||+|.++++|..|+ .|||..|.|++|.|.-+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 45689999999999999999999999999999999884 45689999999999999998 899999999999999876
Q ss_pred CCCC
Q 026963 99 QFES 102 (230)
Q Consensus 99 e~Es 102 (230)
+++.
T Consensus 80 ~y~~ 83 (243)
T PLN03121 80 QYED 83 (243)
T ss_pred cccc
Confidence 5443
No 35
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=1.6e-13 Score=132.70 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccH--hHHHHHHHHhcCceeCCceeEEEe
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLF--SNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~--edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..-+|||+||++.++++||..+|++||.|.+|.|+ ++|| ||||||.|... .++.+||..|||..+.|+.|+|.-
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34689999999999999999999999999999999 5567 99999999987 789999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 93
No 36
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.4e-13 Score=133.98 Aligned_cols=89 Identities=22% Similarity=0.280 Sum_probs=78.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963 16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (230)
Q Consensus 16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs 95 (230)
|..+-..|+|+||||.+..++|+.+||.||.|.+|.|+...+ |+.+|||||+|.+..+|..|++.+||.+|.|+++-|+
T Consensus 113 v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVD 191 (678)
T KOG0127|consen 113 VDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVD 191 (678)
T ss_pred ccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEe
Confidence 345677899999999999999999999999999999998776 5556999999999999999999999999999999999
Q ss_pred ecCCCCChHH
Q 026963 96 YASQFESLAD 105 (230)
Q Consensus 96 yA~e~Es~~d 105 (230)
||-+....++
T Consensus 192 WAV~Kd~ye~ 201 (678)
T KOG0127|consen 192 WAVDKDTYED 201 (678)
T ss_pred eecccccccc
Confidence 9965444443
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.46 E-value=3.5e-14 Score=129.81 Aligned_cols=140 Identities=18% Similarity=0.204 Sum_probs=117.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCCCC
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFE 101 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~E 101 (230)
.|||+|||..+++.+|+.||++||+|.+|.|+++ ||||..++...|+.||+.|+|+.+.|..|.|+-+ +
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaS---k 72 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS---K 72 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEec---c
Confidence 5999999999999999999999999999999987 8999999999999999999999999999999987 4
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCCceee
Q 026963 102 SLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRV 180 (230)
Q Consensus 102 s~~d~r~Kl~~rr~ev~~Rl~~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (230)
+++.+.-|+- -.|+...+..+..++ |.++|-+..|== -++ .+|+|+.+..|+..+.-
T Consensus 73 sKsk~stkl~----------vgNis~tctn~ElRa~fe~ygpviecdi-----------vkd-y~fvh~d~~eda~~air 130 (346)
T KOG0109|consen 73 SKSKASTKLH----------VGNISPTCTNQELRAKFEKYGPVIECDI-----------VKD-YAFVHFDRAEDAVEAIR 130 (346)
T ss_pred ccCCCccccc----------cCCCCccccCHHHhhhhcccCCceeeee-----------ecc-eeEEEEeeccchHHHHh
Confidence 4443333311 157777776666666 889997775511 345 79999999999999999
Q ss_pred ccCcccccccCchh
Q 026963 181 SSDKDYFASQSMNQ 194 (230)
Q Consensus 181 ~~~~~~~~~~~~~~ 194 (230)
+-|---|.++-|--
T Consensus 131 ~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 131 GLDNTEFQGKRMHV 144 (346)
T ss_pred cccccccccceeee
Confidence 99999999888753
No 38
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.1e-13 Score=123.06 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=70.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
+.|||+||||.+..++|++.|++||+|++++++.|+.|++++|||||+|.|.++|.+|.+..|- .++||+-.|..|
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p-iIdGR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP-IIDGRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC-cccccccccchh
Confidence 4799999999999999999999999999999999999999999999999999999999988763 678998888777
No 39
>smart00361 RRM_1 RNA recognition motif.
Probab=99.43 E-value=4.2e-13 Score=96.98 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=55.9
Q ss_pred HHHHHHhhc----cCCcceEEE-eecCCCC--CCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963 34 GDDLLKLFA----TYGDIEECK-PMDAEDC--DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (230)
Q Consensus 34 eedL~~LFS----~fG~I~~v~-il~d~~t--gksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs 95 (230)
+++|.++|+ +||+|.+|. ++.+..+ +.++|||||.|.+.++|..|++.|||..|.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 6666666 8999999999999999999999999999999999874
No 40
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.3e-13 Score=125.98 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=72.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++|+|.|+|+..-+.||...|.+||+|.+|.|+.++ .-+||||||+|++++||.+|-.+|||..+.||+|.|.-|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 4689999999999999999999999999999999875 458999999999999999999999999999999999988
No 41
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.41 E-value=8.3e-13 Score=130.25 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=68.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccC--CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATY--GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~f--G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++|||+|||+.+++++|+++|++| |+|++|++++ |||||+|++.++|..|++.|||..|.|+.|+|+||
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999 9999998763 69999999999999999999999999999999999
Q ss_pred CCC
Q 026963 98 SQF 100 (230)
Q Consensus 98 ~e~ 100 (230)
.+.
T Consensus 305 kp~ 307 (578)
T TIGR01648 305 KPV 307 (578)
T ss_pred cCC
Confidence 543
No 42
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=7.4e-13 Score=120.21 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=75.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
..+|||.||.++..+.-|..||++||.|..|++++|..|.+++|||||.+.+-++|.-||..|||+.+.++.|+|+|-
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999999996
No 43
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=8.1e-13 Score=121.09 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
++=.||||.-|+.++++..|...|+.||+|+.+.++.|..||+++|||||+|++..+-..|-+..+|..+.|+.|-|+|-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 3
No 44
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4.3e-13 Score=121.80 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=74.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
+++|+-|...++.++|++-|.+||+|.+++|++|..|++++||+||.|.+.++|++||..|||..+.+|.|+..||
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999
No 45
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.1e-12 Score=119.28 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=79.2
Q ss_pred CCCCcceeeeccCC-CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC
Q 026963 6 DEPPGVRVYTVCDE-SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE 84 (230)
Q Consensus 6 ~~~~avkvytv~~e-S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG 84 (230)
+..+=..||.-..+ ++++||+|++...++++|++.|++||+|.+|++.++ +|||||.|++.|.|..||-.|||
T Consensus 149 ~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNn 222 (321)
T KOG0148|consen 149 KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNN 222 (321)
T ss_pred CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcC
Confidence 44555667877764 568999999998999999999999999999999988 59999999999999999999999
Q ss_pred ceeCCceeEEEecCC
Q 026963 85 FVFLGNRLKVSYASQ 99 (230)
Q Consensus 85 ~~f~Gr~L~VsyA~e 99 (230)
..+.|..++++|-.+
T Consensus 223 tei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 223 TEIGGQLVRCSWGKE 237 (321)
T ss_pred ceeCceEEEEecccc
Confidence 999999999999953
No 46
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.39 E-value=3.9e-13 Score=116.21 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
+...+|||+||+..++++-|++||-+.|+|..+.+++|+.|...+|||||+|.+.|+|.-|++.||+..++|++|+|.-|
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999988
No 47
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=7.4e-13 Score=110.49 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
++..|||.++....+++|+.+.|+.||+|+.+.+-.|+.||-.+|||.|.|+..++|+.|+..|||..+.|..|.|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999999999998
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.7e-12 Score=126.52 Aligned_cols=89 Identities=24% Similarity=0.332 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh-----cC-ceeCCce
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL-----DE-FVFLGNR 91 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L-----nG-~~f~Gr~ 91 (230)
++..+|||+|||+++++++|+.+|++||+|.-+.|+.+++|+.++|.|||.|.+..+|..||.+. +| ..+.|+.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 35689999999999999999999999999999999999999999999999999999999999987 55 7899999
Q ss_pred eEEEecCCCCChHHH
Q 026963 92 LKVSYASQFESLADT 106 (230)
Q Consensus 92 L~VsyA~e~Es~~d~ 106 (230)
|.|..|-.++-..++
T Consensus 370 Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 370 LKVTLAVTRKEAADM 384 (678)
T ss_pred EeeeeccchHHHHHH
Confidence 999999443333333
No 49
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.5e-12 Score=124.41 Aligned_cols=70 Identities=26% Similarity=0.346 Sum_probs=66.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
+.|||+||+..+|++.|+++|++||.|+.|+.++| ||||+|.+.++|.+|++.|||+++.|..|.|.+|.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 47999999999999999999999999999998855 99999999999999999999999999999999993
No 50
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=4.2e-12 Score=121.29 Aligned_cols=78 Identities=23% Similarity=0.268 Sum_probs=74.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-CceeEEEec
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVSYA 97 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr~L~VsyA 97 (230)
..-|||+.||.++.|+||.-||.+-|+|-++++|.|+.+|.+||||||.|.+.++|+.|++.||+++|. |+.|.||.+
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 567999999999999999999999999999999999999999999999999999999999999999995 888998876
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.1e-13 Score=129.82 Aligned_cols=179 Identities=18% Similarity=0.182 Sum_probs=125.3
Q ss_pred ccCCC-CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-C--ce
Q 026963 16 VCDES-RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-G--NR 91 (230)
Q Consensus 16 v~~eS-~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-G--r~ 91 (230)
++|++ -.|||+.+|..++|.||+.||++||.|.+|.|++|+.|+.++|||||.|...++|..|+.+|++.... | .+
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 34433 47999999999999999999999999999999999999999999999999999999999999987654 4 58
Q ss_pred eEEEecCCCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhccccccccccc
Q 026963 92 LKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRIS 170 (230)
Q Consensus 92 L~VsyA~e~Es~~d~r~Kl~~rr~ev~~Rl~~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (230)
++|.|| +...+.. .+.++-.| .-+++.+.+...++ |.++|..-. .-+|+-.+ ..+|| -+|+.|+
T Consensus 109 vqvk~A---d~E~er~--~~e~KLFv-----g~lsK~~te~evr~iFs~fG~Ied---~~ilrd~~-~~sRG-caFV~fs 173 (510)
T KOG0144|consen 109 VQVKYA---DGERERI--VEERKLFV-----GMLSKQCTENEVREIFSRFGHIED---CYILRDPD-GLSRG-CAFVKFS 173 (510)
T ss_pred eeeccc---chhhhcc--ccchhhhh-----hhccccccHHHHHHHHHhhCccch---hhheeccc-ccccc-eeEEEEe
Confidence 999999 2111110 11111122 23666776667777 888995442 22222211 23677 6777777
Q ss_pred ccCCCCceeeccCcc-cccccCchhhHHHHHHHHhhhhcc
Q 026963 171 HVNESPITRVSSDKD-YFASQSMNQTVRLVREKLNKIESS 209 (230)
Q Consensus 171 ~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~ 209 (230)
--.-|-.+.-++|.- =.++-|-|+-|||---+=||-+..
T Consensus 174 tke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 174 TKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred hHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 655454444455543 367888888888865554444433
No 52
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=1.9e-12 Score=112.83 Aligned_cols=78 Identities=26% Similarity=0.318 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.+.+|||+|||.++-+.|+.+||.+||.|.+|.+..- .....||||+|+++.+|..||..-||+.|.|..|+|+|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4678999999999999999999999999999987543 2345799999999999999999999999999999999995
Q ss_pred C
Q 026963 99 Q 99 (230)
Q Consensus 99 e 99 (230)
-
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 4
No 53
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.3e-12 Score=121.75 Aligned_cols=78 Identities=26% Similarity=0.378 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce-eCC--ceeEEE
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV-FLG--NRLKVS 95 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~-f~G--r~L~Vs 95 (230)
+.+.|||+-|+..++|.|+.++|++||.|++|.|++|.+ +.+||||||+|...+-|..||+.|||.. +.| .+|.|.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 457899999999999999999999999999999999965 8999999999999999999999999986 445 589999
Q ss_pred ec
Q 026963 96 YA 97 (230)
Q Consensus 96 yA 97 (230)
||
T Consensus 202 FA 203 (510)
T KOG0144|consen 202 FA 203 (510)
T ss_pred ec
Confidence 99
No 54
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.27 E-value=1.2e-11 Score=116.84 Aligned_cols=81 Identities=12% Similarity=0.175 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCC----------CHHHHHHhhccCCcceEEEeecC---CCCCCceeEEEEEEccHhHHHHHHHHhcCc
Q 026963 19 ESRYLIVRNVPSLG----------CGDDLLKLFATYGDIEECKPMDA---EDCDPFTDVYFIKFRLFSNARFAKRKLDEF 85 (230)
Q Consensus 19 eS~~LyV~NLP~~~----------teedL~~LFS~fG~I~~v~il~d---~~tgksrG~AFV~F~d~edA~~A~~~LnG~ 85 (230)
++.+|+|.||+... ..++|+++|++||.|++|.|+.+ ..++...|+|||+|.+.++|..|+..|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 56789999997421 12679999999999999999875 234567899999999999999999999999
Q ss_pred eeCCceeEEEecCC
Q 026963 86 VFLGNRLKVSYASQ 99 (230)
Q Consensus 86 ~f~Gr~L~VsyA~e 99 (230)
.|.|+.|.|.|.++
T Consensus 488 ~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 488 KFNDRVVVAAFYGE 501 (509)
T ss_pred EECCeEEEEEEeCH
Confidence 99999999999953
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.26 E-value=5.6e-12 Score=122.45 Aligned_cols=77 Identities=27% Similarity=0.304 Sum_probs=74.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.|||+||.++.++++|..+|.+||.|+.|.+++|.+||.++|||||+|.+.++|++|..+|||.++-|+.|+|+.-.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 39999999999999999999999999999999998899999999999999999999999999999999999998753
No 56
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=8.8e-12 Score=117.09 Aligned_cols=74 Identities=22% Similarity=0.389 Sum_probs=70.5
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.|||.||++.++..+|++.|+.||.|.+|+++.+.. | ++|| ||+|++.++|..|+..|||..+.|++|.|..+.
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 399999999999999999999999999999999865 4 9999 999999999999999999999999999999884
No 57
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=1.6e-11 Score=122.19 Aligned_cols=92 Identities=18% Similarity=0.309 Sum_probs=83.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e 99 (230)
.+.|+|+|||+..+-.++..||+.||.|.+|.|++....+..+|||||.|..+.+|.+|+++|.++-++|+.|.++||..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 46899999999999999999999999999999998766678899999999999999999999999999999999999976
Q ss_pred CCChHHHHHHHH
Q 026963 100 FESLADTKDKLE 111 (230)
Q Consensus 100 ~Es~~d~r~Kl~ 111 (230)
..+.++++.+..
T Consensus 693 d~~~e~~r~r~A 704 (725)
T KOG0110|consen 693 DNTMEALRERTA 704 (725)
T ss_pred chHHHHHHHHHH
Confidence 666666666543
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.18 E-value=2.5e-11 Score=111.29 Aligned_cols=82 Identities=27% Similarity=0.364 Sum_probs=72.4
Q ss_pred CCcceeeeccC---CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC
Q 026963 8 PPGVRVYTVCD---ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE 84 (230)
Q Consensus 8 ~~avkvytv~~---eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG 84 (230)
..+|+|-.--+ .+++|.|+|+.+.++.+||+..|.+||+|.+|.|++| |+||.|+-.++|..|++.|||
T Consensus 63 g~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~ 134 (346)
T KOG0109|consen 63 GVNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDN 134 (346)
T ss_pred ceEEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccc
Confidence 34444443322 5679999999999999999999999999999999975 899999999999999999999
Q ss_pred ceeCCceeEEEec
Q 026963 85 FVFLGNRLKVSYA 97 (230)
Q Consensus 85 ~~f~Gr~L~VsyA 97 (230)
.+|+|++|+|+.+
T Consensus 135 ~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 135 TEFQGKRMHVQLS 147 (346)
T ss_pred cccccceeeeeee
Confidence 9999999999987
No 59
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.17 E-value=3.1e-11 Score=104.48 Aligned_cols=81 Identities=22% Similarity=0.222 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEE-EeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEEC-KPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v-~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
+-+.+|||+||.+.+++.-|+++|+.||.|.+. +|+.+.+||.++|||||.|.+.+.+..|+..|||..+..+++.|+|
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 345799999999999999999999999999874 8899999999999999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|-
T Consensus 174 a~ 175 (203)
T KOG0131|consen 174 AF 175 (203)
T ss_pred EE
Confidence 94
No 60
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.3e-11 Score=111.71 Aligned_cols=82 Identities=21% Similarity=0.343 Sum_probs=78.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963 16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (230)
Q Consensus 16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs 95 (230)
+..|-..|||.-|.+.++++||+-+||.||+|.+|.++.|..||.+--||||+|++.++.+.|.-+|++.-+..+.|||.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 026963 96 YA 97 (230)
Q Consensus 96 yA 97 (230)
|+
T Consensus 315 FS 316 (479)
T KOG0415|consen 315 FS 316 (479)
T ss_pred hh
Confidence 99
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=3.5e-11 Score=109.77 Aligned_cols=85 Identities=20% Similarity=0.236 Sum_probs=79.1
Q ss_pred eecc-CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCcee
Q 026963 14 YTVC-DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL 92 (230)
Q Consensus 14 ytv~-~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L 92 (230)
+++. .++.+|||..||....+.||...|-+||.|++.++..|+.|..++.|+||.|+++.+|+.||.+|||+.+..+.|
T Consensus 278 qqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 278 QQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred hhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence 3444 367799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC
Q 026963 93 KVSYAS 98 (230)
Q Consensus 93 ~VsyA~ 98 (230)
+|..-+
T Consensus 358 KVQLKR 363 (371)
T KOG0146|consen 358 KVQLKR 363 (371)
T ss_pred hhhhcC
Confidence 999763
No 62
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.13 E-value=1.3e-10 Score=101.89 Aligned_cols=81 Identities=12% Similarity=0.256 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC-CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATY-GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~f-G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
...-+||..+|...-+.++...|.+| |.|..+++.+.+.||.++|||||+|++.+.|..|-+.||++-|+|+-|.|.|-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45679999999988899999999999 88888888899999999999999999999999999999999999999999998
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
|+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 64
No 63
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=4.2e-10 Score=102.80 Aligned_cols=78 Identities=29% Similarity=0.471 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-C--ceeEEE
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-G--NRLKVS 95 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-G--r~L~Vs 95 (230)
+.+.|||+=|...-.|||++.||++||.|++|.++...+ |.++|+|||+|.+..+|..||..|+|..-. | ..|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 567899999999899999999999999999999999876 899999999999999999999999998865 3 469999
Q ss_pred ec
Q 026963 96 YA 97 (230)
Q Consensus 96 yA 97 (230)
||
T Consensus 97 ~A 98 (371)
T KOG0146|consen 97 FA 98 (371)
T ss_pred ec
Confidence 99
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=2.7e-10 Score=107.54 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=74.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++||+.+.+..-++.|+.-|.+||+|+++++--|+.|++.+|||||+|+=+|.|+.|++.|||.++.|+-|+|...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999865
No 65
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=8.4e-10 Score=110.05 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=70.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCC---CceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCD---PFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tg---ksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.|||.||++.++.++|..+|..+|.|.+|.|.+.++-. .+.|||||+|.++++|+.|++.|+|+.+.|+.|.|.|++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 39999999999999999999999999999887765422 355999999999999999999999999999999999995
No 66
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.1e-09 Score=103.09 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=68.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e 99 (230)
..|||+ | .+++.+|+++|+++|+|.++++.+|. | +-|||||.|.++++|.+|++.||...+.|++++|.|+..
T Consensus 2 ~sl~vg--~-~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG--P-DVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC--C-cCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 358999 4 69999999999999999999999998 6 999999999999999999999999999999999999953
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.95 E-value=1.3e-09 Score=109.69 Aligned_cols=74 Identities=27% Similarity=0.368 Sum_probs=70.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e 99 (230)
|+||||++||..+++.||..+|..||+|.+|.+.-. +|+|||++....+|.+|+.+|..+.+.++.|+|.||-.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 799999999999999999999999999999998754 69999999999999999999999999999999999943
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.80 E-value=7.5e-09 Score=102.10 Aligned_cols=79 Identities=22% Similarity=0.235 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
+++|||.+|+..+--.||+.||++||+|+-.+++.+..+.-.+.|+||++...++|.+||..|+-+++.|+.|.|.-|.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 6799999999877779999999999999999999988777788999999999999999999999999999999999884
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.79 E-value=9.1e-09 Score=98.93 Aligned_cols=75 Identities=20% Similarity=0.195 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
..+.+|+|+|||.+.|+..|++.|-.||.|.-+.|+.. ++++| .|.|.++++|+.|++.|||..+.|+.|.|.|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 35668999999999999999999999999999998644 78887 89999999999999999999999999999984
No 70
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.78 E-value=2e-08 Score=90.16 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=74.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..-+..|+|.|||..++++||.+||..||.++.+-+-.++ .|.+.|.|-|.|...++|..|++.+||..+.|++|++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3345789999999999999999999999999999988885 589999999999999999999999999999999999998
Q ss_pred c
Q 026963 97 A 97 (230)
Q Consensus 97 A 97 (230)
.
T Consensus 159 i 159 (243)
T KOG0533|consen 159 I 159 (243)
T ss_pred e
Confidence 7
No 71
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.74 E-value=8.4e-09 Score=96.41 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceE--------EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--------CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN 90 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~--------v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr 90 (230)
-+++|||+|||.++|-+|..++|+++|-|.. |++..+.. |+.+|=|.|+|-..++...|+..||+..|.|.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 4678999999999999999999999999965 78877755 99999999999999999999999999999999
Q ss_pred eeEEEecC
Q 026963 91 RLKVSYAS 98 (230)
Q Consensus 91 ~L~VsyA~ 98 (230)
.|+|+-|.
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99999883
No 72
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=2.1e-08 Score=94.90 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=73.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.+|||..+.++..++||+..|..||+|..|.+..++.++..+||+||+|.+..+-..|+..||-+-+.|..|+|--+
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999755
No 73
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=3.2e-08 Score=92.56 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=66.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHH-HhcCceeCCceeEEEecC
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKR-KLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~-~LnG~~f~Gr~L~VsyA~ 98 (230)
.++|||++|-+.+++.||.++|.+||+|+++.++.. +|+|||+|.+.++|+.|.. .+|-..+.|..|.|.|++
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 469999999889999999999999999999999876 4799999999999999987 456666799999999995
Q ss_pred C
Q 026963 99 Q 99 (230)
Q Consensus 99 e 99 (230)
.
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 4
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.70 E-value=3.8e-08 Score=94.77 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=71.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhc-cCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFA-TYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS-~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.+.+||.|+|.+..+.+|++||- +-|+|+=|.++.|. .++++|+|.|+|+++|.+++|++.||-+.+.|++|.|.=-
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 35699999999999999999995 68999999999985 5999999999999999999999999999999999999844
No 75
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.68 E-value=6.4e-08 Score=86.69 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=67.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecC-CCCCCceeEEEEEEccHhHHHHHHHHhcCceeC---CceeEEE
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDA-EDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL---GNRLKVS 95 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d-~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~---Gr~L~Vs 95 (230)
-++|||.+||.++...||+.||-.|-.-+.+.+-.. +.....+-+|||+|.+.++|..|+++|||..|. |..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 579999999999999999999999999988876543 222234569999999999999999999999997 6789999
Q ss_pred ec
Q 026963 96 YA 97 (230)
Q Consensus 96 yA 97 (230)
+|
T Consensus 114 lA 115 (284)
T KOG1457|consen 114 LA 115 (284)
T ss_pred eh
Confidence 99
No 76
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.67 E-value=1.9e-08 Score=93.13 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++..|+|++|+|.++++.|.+.|++||+|.+|.+++|+.|++++||+||+|.+++.-..++. ..-+.+.|+.+.+.-|-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999998886665544 33456778887777664
Q ss_pred CCC
Q 026963 99 QFE 101 (230)
Q Consensus 99 e~E 101 (230)
.++
T Consensus 84 ~r~ 86 (311)
T KOG4205|consen 84 SRE 86 (311)
T ss_pred Ccc
Confidence 333
No 77
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.65 E-value=4.4e-08 Score=87.13 Aligned_cols=78 Identities=17% Similarity=0.151 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
..+.+||+|+...++.+++...|+.||.|..+.++.|+.++.++|||||.|.+.+.++.|+. |||..+.|+.+.|++.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 46789999999999998999999999999999999999999999999999999999999999 9999999999999987
No 78
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=2e-08 Score=98.11 Aligned_cols=70 Identities=29% Similarity=0.471 Sum_probs=64.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
+.++|+|.|||..+++++|..+|+.||+|.+|.. |...+|..||+|.|+.+|+.|+++|++..+.|+.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3679999999999999999999999999998553 345679999999999999999999999999999998
No 79
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.60 E-value=5.7e-08 Score=97.53 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=74.9
Q ss_pred eeccCCC-CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCC---CCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963 14 YTVCDES-RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAE---DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (230)
Q Consensus 14 ytv~~eS-~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~---~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G 89 (230)
++..++. ++|||+||++.++++.|...|+.||+|..++|+-.+ +....+-+|||.|.+..||+.|++.|+|..+++
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 5566665 589999999999999999999999999999998743 334566799999999999999999999999999
Q ss_pred ceeEEEec
Q 026963 90 NRLKVSYA 97 (230)
Q Consensus 90 r~L~VsyA 97 (230)
.+|++-|+
T Consensus 247 ~e~K~gWg 254 (877)
T KOG0151|consen 247 YEMKLGWG 254 (877)
T ss_pred eeeeeccc
Confidence 99999998
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=4.3e-08 Score=86.75 Aligned_cols=70 Identities=24% Similarity=0.323 Sum_probs=65.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
..+||++||+.+.+.||..+|..||.|.+|.+.. ||+||.|+|..+|..|+.-|||..|.|..+.|+||.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 3589999999999999999999999999888653 799999999999999999999999999999999993
No 81
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.56 E-value=1.8e-07 Score=89.42 Aligned_cols=74 Identities=26% Similarity=0.396 Sum_probs=67.4
Q ss_pred CCeEEEcCCCCC-CCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 20 SRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 20 S~~LyV~NLP~~-~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
+..|.|.||... +|.+-|+.||+-||.|..|+|+..+ +..|.|+|.|...|+-|+..|+|..++|++|+|.|+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 467999999875 5778899999999999999999874 2689999999999999999999999999999999983
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=3.8e-08 Score=87.84 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=72.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
+...++|||.|+...++++-|.+||-+-|+|.+|.|.++++ ++.+ ||||.|++.-+...|+..|||-.++|.+++|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 34568999999999999999999999999999999999887 4555 999999999999999999999999999999987
Q ss_pred c
Q 026963 97 A 97 (230)
Q Consensus 97 A 97 (230)
-
T Consensus 84 r 84 (267)
T KOG4454|consen 84 R 84 (267)
T ss_pred c
Confidence 4
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.50 E-value=9.8e-07 Score=69.29 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=68.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcc--CCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC----CceeEE
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFAT--YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL----GNRLKV 94 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~--fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~----Gr~L~V 94 (230)
+||-|+|+|...+.++|.+++.. .|...=+-++-|-.++-..|||||.|.+++.|..-.+.++|+.+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999887766544 477777888889889999999999999999999999999999986 578999
Q ss_pred Eec
Q 026963 95 SYA 97 (230)
Q Consensus 95 syA 97 (230)
+||
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 999
No 84
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.44 E-value=3.8e-07 Score=87.55 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=64.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
..+|||+|||.+++.++|++.|..||+|+...|..-...++..+||||.|++.+++..|+.+- -..+.|+.|.|+=-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEec
Confidence 456999999999999999999999999998877653322444499999999999999999887 66677889999843
No 85
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.39 E-value=5.2e-07 Score=83.62 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
....++|++||.++++++|++.|.+||.|..+.++.|..+...+||+||.|.+.++...+ -...-+.|.|+.+.|.-|
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv-~~~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV-TLQKFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee-cccceeeecCceeeEeec
Confidence 356899999999999999999999999999999999999999999999999998877766 456788999999999999
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.26 E-value=1.1e-06 Score=79.69 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=72.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.-.||.+-|...++.+-|-..|.+|-.....++++|..|++++||+||.|.++.++..|++.|||.-+..++|+.--.
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 347999999988899999999999999999999999999999999999999999999999999999999999876543
No 87
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.25 E-value=2.7e-06 Score=65.97 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=48.6
Q ss_pred CeEEEcCCCCCCCH----HHHHHhhccCCc-ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963 21 RYLIVRNVPSLGCG----DDLLKLFATYGD-IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (230)
Q Consensus 21 ~~LyV~NLP~~~te----edL~~LFS~fG~-I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs 95 (230)
+.|||.|||.+... .-|..|+.-+|- |.+|. .|.|.|.|.+++.|.+|.+-|+|...+|+.|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46999999986655 448888888875 44331 2689999999999999999999999999999999
Q ss_pred ecCCCCChHHH
Q 026963 96 YASQFESLADT 106 (230)
Q Consensus 96 yA~e~Es~~d~ 106 (230)
|.|.-....++
T Consensus 73 ~~~~~r~~~~~ 83 (90)
T PF11608_consen 73 FSPKNREFNET 83 (90)
T ss_dssp SS--S------
T ss_pred EcCCcccccCc
Confidence 99743333333
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.21 E-value=1.1e-06 Score=85.94 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
...+||+|||-..+++++.++...||++....++.+..+|.++||||.+|.++.....|+..|||..+.++.|.|..|
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 346999999999999999999999999999999999999999999999999999999999999999999999999988
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.21 E-value=1.1e-06 Score=82.42 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceE--------EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--------CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN 90 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~--------v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr 90 (230)
...++||.+||..+++++|.+.|.++|.|.. +.|-+|++|++++|=|.|.|+|...|+.|+..+++..|.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 3458999999999999999999999999964 67778899999999999999999999999999999999999
Q ss_pred eeEEEec
Q 026963 91 RLKVSYA 97 (230)
Q Consensus 91 ~L~VsyA 97 (230)
+|+|..|
T Consensus 145 ~ikvs~a 151 (351)
T KOG1995|consen 145 TIKVSLA 151 (351)
T ss_pred Cchhhhh
Confidence 9999999
No 90
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.12 E-value=1.2e-06 Score=85.88 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=72.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
+++++-.|+...++.||+++|+.+|+|.+|.++.|+.++.++|.|||+|.|.++...|+ .|.|..+.|-+|.|...
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 58888888888899999999999999999999999999999999999999999999998 99999999999999865
No 91
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.07 E-value=2.5e-06 Score=78.05 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=73.9
Q ss_pred CCCeEE-EcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLI-VRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~Ly-V~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
++.++| |.||++.+++++|+..|..+|.|..++++.++.++.++|||||.|.....+..|+.. +...+.|.++.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345555 999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
+
T Consensus 262 ~ 262 (285)
T KOG4210|consen 262 E 262 (285)
T ss_pred C
Confidence 4
No 92
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.93 E-value=4.4e-05 Score=67.95 Aligned_cols=76 Identities=21% Similarity=0.386 Sum_probs=69.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-CceeEEE
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVS 95 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr~L~Vs 95 (230)
..++..|++.|||..++.+.|..+|.+|+...+++.+... .|.|||+|.+...|..|...|+|..+- ...|+|+
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4567899999999998999999999999999999998753 489999999999999999999999998 8999999
Q ss_pred ec
Q 026963 96 YA 97 (230)
Q Consensus 96 yA 97 (230)
||
T Consensus 218 ~a 219 (221)
T KOG4206|consen 218 FA 219 (221)
T ss_pred cc
Confidence 98
No 93
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=4e-05 Score=76.00 Aligned_cols=76 Identities=20% Similarity=0.221 Sum_probs=63.2
Q ss_pred CCCCeEEEcCCCCCCC------HHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc-
Q 026963 18 DESRYLIVRNVPSLGC------GDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN- 90 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~t------eedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr- 90 (230)
...+.+.|-|+|-... ..-|.++|+++|+|..+.++.++++| .+||.|+.|.+..+|..|++.|||+.|.-+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3457899999995322 24478899999999999999888766 999999999999999999999999999754
Q ss_pred eeEE
Q 026963 91 RLKV 94 (230)
Q Consensus 91 ~L~V 94 (230)
.+.|
T Consensus 135 tf~v 138 (698)
T KOG2314|consen 135 TFFV 138 (698)
T ss_pred eEEe
Confidence 4444
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.84 E-value=3.4e-05 Score=72.92 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=60.9
Q ss_pred CeEEEcCCCCCCCHHH----H--HHhhccCCcceEEEeecCCCCCC-ceeE--EEEEEccHhHHHHHHHHhcCceeCCce
Q 026963 21 RYLIVRNVPSLGCGDD----L--LKLFATYGDIEECKPMDAEDCDP-FTDV--YFIKFRLFSNARFAKRKLDEFVFLGNR 91 (230)
Q Consensus 21 ~~LyV~NLP~~~teed----L--~~LFS~fG~I~~v~il~d~~tgk-srG~--AFV~F~d~edA~~A~~~LnG~~f~Gr~ 91 (230)
.-+||-+||+.+..++ | .+.|++||+|.++.+-+....-. -.|. .||+|...++|.+||...||..+.|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4579999998766655 4 47899999999998765431111 1222 399999999999999999999999999
Q ss_pred eEEEec
Q 026963 92 LKVSYA 97 (230)
Q Consensus 92 L~VsyA 97 (230)
|+..|.
T Consensus 195 lkatYG 200 (480)
T COG5175 195 LKATYG 200 (480)
T ss_pred EeeecC
Confidence 999985
No 95
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.80 E-value=1.3e-05 Score=71.09 Aligned_cols=79 Identities=27% Similarity=0.283 Sum_probs=65.8
Q ss_pred ceeeeccCC-CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963 11 VRVYTVCDE-SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (230)
Q Consensus 11 vkvytv~~e-S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G 89 (230)
..-|-+... ...|.|.|++....+.+|.+.|.+||++....+ .++++||+|...++|..|+..|+|..+.|
T Consensus 89 ~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~ 160 (216)
T KOG0106|consen 89 SRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNG 160 (216)
T ss_pred hhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcC
Confidence 334444333 346889999998899999999999999954443 35799999999999999999999999999
Q ss_pred ceeEEEec
Q 026963 90 NRLKVSYA 97 (230)
Q Consensus 90 r~L~VsyA 97 (230)
+.|.+.++
T Consensus 161 ~~l~~~~~ 168 (216)
T KOG0106|consen 161 RRISVEKN 168 (216)
T ss_pred ceeeeccc
Confidence 99999655
No 96
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.70 E-value=9.2e-05 Score=69.78 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=61.8
Q ss_pred CCeEEEcCCCC----CC-------CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963 20 SRYLIVRNVPS----LG-------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88 (230)
Q Consensus 20 S~~LyV~NLP~----~~-------teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~ 88 (230)
.++|.++|+=. .. .++||.+-+++||.|.+|.+... .+.|++-|.|.+.++|..||+.|+|..|.
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fd 340 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFD 340 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeec
Confidence 46888898631 11 23778888999999999998753 56799999999999999999999999999
Q ss_pred CceeEEEec
Q 026963 89 GNRLKVSYA 97 (230)
Q Consensus 89 Gr~L~VsyA 97 (230)
|+.|+.+.-
T Consensus 341 gRql~A~i~ 349 (382)
T KOG1548|consen 341 GRQLTASIW 349 (382)
T ss_pred ceEEEEEEe
Confidence 999998754
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.65 E-value=4.6e-05 Score=68.65 Aligned_cols=65 Identities=20% Similarity=0.172 Sum_probs=56.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~ 88 (230)
..+|||-||...+++++|+.+|+.|-.....+|--. + .-.+||+.|++++.|..||..|.|..+-
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---~-g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---G-GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---C-CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 468999999999999999999999999887776432 2 2358999999999999999999998874
No 98
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.54 E-value=0.00022 Score=70.02 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=56.0
Q ss_pred HHHHHhhccCCcceEEEeecCC---CCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 35 DDLLKLFATYGDIEECKPMDAE---DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 35 edL~~LFS~fG~I~~v~il~d~---~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++++.-++.||.|.+|.|..+. .-....|--||+|.+.++++.|+..|.|..|.|+.+..+|-+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 4566779999999999998872 224567889999999999999999999999999999999985
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.51 E-value=0.00059 Score=53.85 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=44.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCc-----eeCCceeEEEe
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF-----VFLGNRLKVSY 96 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~-----~f~Gr~L~Vsy 96 (230)
.|.|.+++..++.++|+++|++||+|.=|...... .-|||.|.+.+.|+.|+.++... .+.|..+.+..
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 57889999989999999999999999877766542 36999999999999999988655 45566666654
Q ss_pred c
Q 026963 97 A 97 (230)
Q Consensus 97 A 97 (230)
-
T Consensus 77 L 77 (105)
T PF08777_consen 77 L 77 (105)
T ss_dssp -
T ss_pred C
Confidence 4
No 100
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.48 E-value=0.00027 Score=49.38 Aligned_cols=53 Identities=23% Similarity=0.457 Sum_probs=43.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHH
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~ 79 (230)
++.|-|.+.|. ...+++...|..||+|.++.+... .-+.+|+|.+..+|+.|+
T Consensus 1 ~~wI~V~Gf~~-~~~~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPP-DLAEEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECc-hHHHHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 46788999996 455778889999999999887632 348999999999999884
No 101
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.47 E-value=6.2e-05 Score=68.29 Aligned_cols=64 Identities=23% Similarity=0.369 Sum_probs=56.6
Q ss_pred HHHHHhhc-cCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963 35 DDLLKLFA-TYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (230)
Q Consensus 35 edL~~LFS-~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e 99 (230)
+|+..-|+ +||+|+++++.+. -.....|-++|.|...++|+.|+..|||..|.|++|+..+.|-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 55666677 9999999988765 3467889999999999999999999999999999999999974
No 102
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.46 E-value=8.4e-05 Score=71.67 Aligned_cols=77 Identities=22% Similarity=0.238 Sum_probs=61.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecC---CCC--CC--------ceeEEEEEEccHhHHHHHHHHhcC
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDA---EDC--DP--------FTDVYFIKFRLFSNARFAKRKLDE 84 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d---~~t--gk--------srG~AFV~F~d~edA~~A~~~LnG 84 (230)
.++++|.+-|||.+..-+.|.+||+.+|.|..|+|++- +.. +. .+-+|+|+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 37899999999998888999999999999999999875 221 11 256899999999999999999976
Q ss_pred ceeCCceeEE
Q 026963 85 FVFLGNRLKV 94 (230)
Q Consensus 85 ~~f~Gr~L~V 94 (230)
..-+-.-|+|
T Consensus 309 e~~wr~glkv 318 (484)
T KOG1855|consen 309 EQNWRMGLKV 318 (484)
T ss_pred hhhhhhcchh
Confidence 5544333433
No 103
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.43 E-value=0.00032 Score=67.60 Aligned_cols=85 Identities=22% Similarity=0.266 Sum_probs=72.1
Q ss_pred Ccceeee-ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee
Q 026963 9 PGVRVYT-VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF 87 (230)
Q Consensus 9 ~avkvyt-v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f 87 (230)
+++|=|- .+.++.+|...|+|..++++||+.+|..-|-..+..... ++.+-+|.++++++|+|..|.-.|+.+.+
T Consensus 402 pgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~l 477 (492)
T KOG1190|consen 402 PGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYL 477 (492)
T ss_pred cccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccC
Confidence 4455554 457899999999999999999999999999987665443 23456999999999999999999999999
Q ss_pred CCc-eeEEEec
Q 026963 88 LGN-RLKVSYA 97 (230)
Q Consensus 88 ~Gr-~L~VsyA 97 (230)
.+. -|+|+|+
T Consensus 478 gen~hlRvSFS 488 (492)
T KOG1190|consen 478 GENHHLRVSFS 488 (492)
T ss_pred CCCceEEEEee
Confidence 887 7999998
No 104
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.43 E-value=0.00021 Score=65.18 Aligned_cols=88 Identities=14% Similarity=0.218 Sum_probs=70.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCC--------CCcee----EEEEEEccHhHHHHHHHHhcCcee
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDC--------DPFTD----VYFIKFRLFSNARFAKRKLDEFVF 87 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~t--------gksrG----~AFV~F~d~edA~~A~~~LnG~~f 87 (230)
...+|++|+|+.+...-|+++|++||.|-.|.+-...++ |.+++ =|||+|.+...|......|||.++
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999988765443 22232 279999999999999999999999
Q ss_pred CCce--------eEEEecCCCCChHHHHH
Q 026963 88 LGNR--------LKVSYASQFESLADTKD 108 (230)
Q Consensus 88 ~Gr~--------L~VsyA~e~Es~~d~r~ 108 (230)
.|+. ..+.|-|.++ +.++-+
T Consensus 154 ggkk~S~~~~dlWNmKYLprFK-W~hLTE 181 (278)
T KOG3152|consen 154 GGKKKSPFRDDLWNMKYLPRFK-WVHLTE 181 (278)
T ss_pred CCCCCCchHHhhhhhhhccCcc-hHHHHH
Confidence 9974 5677777654 334433
No 105
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.42 E-value=0.00029 Score=68.81 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=63.4
Q ss_pred eccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963 15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (230)
Q Consensus 15 tv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V 94 (230)
++..+...|-+++|||.+|++||.++|+-.+ |+.+.+. +.+|+..|=|||+|.+.+++..|+++ |-..+..+-|.|
T Consensus 5 ~e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEV 80 (510)
T KOG4211|consen 5 NEGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEV 80 (510)
T ss_pred cCCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEE
Confidence 3445566788999999999999999999986 6665554 45799999999999999999999764 555566667777
Q ss_pred Eec
Q 026963 95 SYA 97 (230)
Q Consensus 95 syA 97 (230)
--+
T Consensus 81 f~~ 83 (510)
T KOG4211|consen 81 FTA 83 (510)
T ss_pred Ecc
Confidence 655
No 106
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.20 E-value=0.00058 Score=64.98 Aligned_cols=85 Identities=14% Similarity=0.085 Sum_probs=69.0
Q ss_pred eeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCc--ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc
Q 026963 13 VYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGD--IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN 90 (230)
Q Consensus 13 vytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~--I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr 90 (230)
||+-...--++||+||-|++|++||.+-...-|- |.+++...++..|+++|||.|...+..+...-++.|--+.+.|.
T Consensus 73 ~~s~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 73 ATSSEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred cccccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 3554444458999999999999999888777663 45666677788899999999999999999999999999999997
Q ss_pred -eeEEEec
Q 026963 91 -RLKVSYA 97 (230)
Q Consensus 91 -~L~VsyA 97 (230)
+...+|.
T Consensus 153 ~P~V~~~N 160 (498)
T KOG4849|consen 153 SPTVLSYN 160 (498)
T ss_pred CCeeeccc
Confidence 4555666
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.16 E-value=0.0015 Score=62.63 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLG-CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~-teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
++.-+.|.+|.... .-+.|..||=.||.|+.|+.|+.+ .|.|.|++-|....++|+..||+..++|..|.|+++
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 45678999998743 458899999999999999999875 389999999999999999999999999999999998
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 361 k 361 (494)
T KOG1456|consen 361 K 361 (494)
T ss_pred c
Confidence 3
No 108
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.09 E-value=0.0017 Score=63.62 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=61.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceE-EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEE-CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~-v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
..|-+|+||+.++++|+.+.|+--=.|.. +.++.++. ++++|=|||+|++.+.|++|+.. |...+..+-|.|--+
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 46889999999999999999998877776 55566654 67999999999999999999765 445566677888766
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.08 E-value=0.0018 Score=62.11 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=61.1
Q ss_pred CCeEEEcCCCC--CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc--eeEEE
Q 026963 20 SRYLIVRNVPS--LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN--RLKVS 95 (230)
Q Consensus 20 S~~LyV~NLP~--~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr--~L~Vs 95 (230)
+..|.+.=|.+ -+|-+-|+.++-..|+|..|.|++. ++ -+|.|+|++.+.|++|+.+|||.-++.. .|+|+
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 44455544443 3577999999999999999999874 23 4899999999999999999999999865 79999
Q ss_pred ecC
Q 026963 96 YAS 98 (230)
Q Consensus 96 yA~ 98 (230)
||.
T Consensus 195 yAk 197 (494)
T KOG1456|consen 195 YAK 197 (494)
T ss_pred ecC
Confidence 994
No 110
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.00 E-value=0.0019 Score=51.04 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=53.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEE-eecCC------CCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK-PMDAE------DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR 91 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~-il~d~------~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~ 91 (230)
....|.|.+.|+ .....+...|++||+|.+.. +.++. .......+-.|+|.++.+|.+|+. -||..|.|..
T Consensus 5 ~~~wVtVFGfp~-~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPP-SASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---G-GGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCH-HHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 356799999997 47788999999999998875 11110 001223589999999999999986 5999999986
Q ss_pred eE-EEec
Q 026963 92 LK-VSYA 97 (230)
Q Consensus 92 L~-VsyA 97 (230)
|- |.|.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 65 7776
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.00 E-value=9.5e-05 Score=75.86 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=73.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCCC
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQF 100 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~ 100 (230)
-++||+||+..+.++||...|+.||.|..+.+.-...++.++|.|++.|..+++|..|+...++..|.-..+-|+=.|-.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~pf~ 747 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGPPFQ 747 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCCCCC
Confidence 46899999999999999999999999999988767778999999999999999999999998888777555666644444
Q ss_pred CChHHHHH
Q 026963 101 ESLADTKD 108 (230)
Q Consensus 101 Es~~d~r~ 108 (230)
-+.++++.
T Consensus 748 gt~e~~k~ 755 (881)
T KOG0128|consen 748 GTKEELKS 755 (881)
T ss_pred CchHHHHh
Confidence 55555544
No 112
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.95 E-value=0.0023 Score=54.76 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=54.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcc-CCcc---eEEE--eecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc-
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFAT-YGDI---EECK--PMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN- 90 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~-fG~I---~~v~--il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr- 90 (230)
.+...|.||+||+..+++++.+.+++ +|.- ..+. ..........-.-|||.|.+.++...-++.+||+.|...
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999998888 7776 2332 222111122345699999999999999999999999753
Q ss_pred ----eeEEEecCC
Q 026963 91 ----RLKVSYASQ 99 (230)
Q Consensus 91 ----~L~VsyA~e 99 (230)
+-.|.|||-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 577999974
No 113
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.91 E-value=0.0024 Score=65.16 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=66.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
.|-++|+|++++-+|+.++|.-|-.+-.-.+++--+.|..+|=|.|-|++.++|+.|..-||++.+..+.+.+.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 688999999999999999999999997555555456699999999999999999999999999999999887753
No 114
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.82 E-value=0.0051 Score=52.28 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=59.9
Q ss_pred CCCCeEEEcCCCCCCCH-HHHH---HhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 18 DESRYLIVRNVPSLGCG-DDLL---KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~te-edL~---~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
.+-.+|.|+=|..++.. +||. ...+.||+|.+|.+.- +--|.|.|.|..+|..|+.++.. .--|.-++
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 45678999888776543 5554 5689999999998753 24699999999999999999987 66788899
Q ss_pred EEecCCC
Q 026963 94 VSYASQF 100 (230)
Q Consensus 94 VsyA~e~ 100 (230)
++|...+
T Consensus 156 CsWqqrF 162 (166)
T PF15023_consen 156 CSWQQRF 162 (166)
T ss_pred eeccccc
Confidence 9998544
No 115
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.74 E-value=0.0031 Score=58.88 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=53.4
Q ss_pred HHHHHHhhccCCcceEEEeecCCCCCCce-eEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 34 GDDLLKLFATYGDIEECKPMDAEDCDPFT-DVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 34 eedL~~LFS~fG~I~~v~il~d~~tgksr-G~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
+++..+-+.+||+|..|.|...+.-..-. ---||+|+..++|.+|+-.|||.-|.|+.+..+|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 46778899999999999887764322111 23799999999999999999999999999999987
No 116
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.71 E-value=0.0014 Score=59.82 Aligned_cols=68 Identities=28% Similarity=0.208 Sum_probs=60.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G 89 (230)
..|||.||+..+..+.|..-|+.||+|+...+..|. .+++.|=++|.|...-.|..|.+.+...-|.|
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 789999999999999999999999999987776663 48899999999999999999999996666654
No 117
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.66 E-value=0.0014 Score=63.59 Aligned_cols=150 Identities=18% Similarity=0.087 Sum_probs=95.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce-eCCceeEEEecCC
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV-FLGNRLKVSYASQ 99 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~-f~Gr~L~VsyA~e 99 (230)
..||++||.+..+..||..+|..- ++.....----.||+||.+.+..-|..|++.++|+. +.|+++.|.+..+
T Consensus 2 nklyignL~p~~~psdl~svfg~a------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 469999999999999999999865 222111111124899999999999999999999975 8899999998831
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccc---cccccccccCCC
Q 026963 100 FESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRAS---SESQRISHVNES 175 (230)
Q Consensus 100 ~Es~~d~r~Kl~~rr~ev~~Rl~~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 175 (230)
+ +...|...+ .|.|.+..|.---. ++.||...+|-.+|.=..++--|.--+ ..-+...+..-+
T Consensus 76 ---k-----kqrsrk~Qi-----rnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 76 ---K-----KQRSRKIQI-----RNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred ---H-----HHHhhhhhH-----hcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 1 111111111 36677666654333 788998888877775444443322111 122333445555
Q ss_pred CceeeccCcccccc
Q 026963 176 PITRVSSDKDYFAS 189 (230)
Q Consensus 176 ~~~~~~~~~~~~~~ 189 (230)
.+--+.--..|+|.
T Consensus 143 Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 143 QLENQHLKVGYIPD 156 (584)
T ss_pred HhhhhhhhcccCch
Confidence 55555555556654
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.53 E-value=0.0029 Score=65.74 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC--ceeEEE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVS 95 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G--r~L~Vs 95 (230)
.+++.|+|++|+.++...-|...|..||+|..|.+-. | --||+|+|++...|+.|++.|-|..|.| +.|+|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 4678899999999888899999999999999876532 2 2499999999999999999999999998 579999
Q ss_pred ec
Q 026963 96 YA 97 (230)
Q Consensus 96 yA 97 (230)
||
T Consensus 527 la 528 (975)
T KOG0112|consen 527 LA 528 (975)
T ss_pred cc
Confidence 99
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.42 E-value=0.0013 Score=67.78 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
..|+|+|+|+..|.++|+.+|+.+|.+.+..++..+. |+++|.|||.|.+..+|..+...+++..+.-+.+.|..+
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 4689999999999999999999999999999877754 899999999999999999999999999998887777765
No 120
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.013 Score=57.84 Aligned_cols=80 Identities=15% Similarity=0.141 Sum_probs=67.8
Q ss_pred CCCCCCCCcceeeecc------------CCCCeEEEcCCCCCCCHHHHHHhhc-cCCcceEEEeecCCCCCCceeEEEEE
Q 026963 2 PRYKDEPPGVRVYTVC------------DESRYLIVRNVPSLGCGDDLLKLFA-TYGDIEECKPMDAEDCDPFTDVYFIK 68 (230)
Q Consensus 2 ~~~~~~~~avkvytv~------------~eS~~LyV~NLP~~~teedL~~LFS-~fG~I~~v~il~d~~tgksrG~AFV~ 68 (230)
|+.|+++.-|+=|-+. ++.+|+||++||.-.+-+||..+|. .||.|.=+-|=.|++-+=++|-|=|.
T Consensus 340 ~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVt 419 (520)
T KOG0129|consen 340 PTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVT 419 (520)
T ss_pred CcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceee
Confidence 5666666555555544 4678999999999899999999999 99999999998888888899999999
Q ss_pred EccHhHHHHHHHH
Q 026963 69 FRLFSNARFAKRK 81 (230)
Q Consensus 69 F~d~edA~~A~~~ 81 (230)
|.+..+=.+||.+
T Consensus 420 FsnqqsYi~AIsa 432 (520)
T KOG0129|consen 420 FSNQQAYIKAISA 432 (520)
T ss_pred ecccHHHHHHHhh
Confidence 9999999988875
No 121
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.32 E-value=0.011 Score=51.25 Aligned_cols=60 Identities=27% Similarity=0.387 Sum_probs=47.5
Q ss_pred CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc--CceeCCceeEEEecC
Q 026963 33 CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD--EFVFLGNRLKVSYAS 98 (230)
Q Consensus 33 teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln--G~~f~Gr~L~VsyA~ 98 (230)
..+.|.++|..|+.+.+...++. + +-..|.|.+.++|..|+..|+ +..|.|..|+|-|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----F-rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----F-RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----T-TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----C-CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 34789999999999999998865 2 458999999999999999999 999999999999994
No 122
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.14 E-value=0.013 Score=51.82 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=57.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G 89 (230)
.+.|++||+...++||+++.-.-|.|.-..+.+| |++.|.|...|+-.-|+++|+...|..
T Consensus 117 RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 117 RVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred eEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccC
Confidence 6899999999999999999999999998888777 799999999999999999999999875
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.11 E-value=0.0074 Score=58.16 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=74.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceE---EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEE---CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~---v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..+|.+|+||...+-+|+.+.|..|..-+. |.++.+. -|.+.|=|||+|.+.++|..|....+.+...++.|.|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 458999999999999999999999987665 5666553 388999999999999999999999999888899998876
Q ss_pred cCCCCChHHHHHHHHH
Q 026963 97 ASQFESLADTKDKLET 112 (230)
Q Consensus 97 A~e~Es~~d~r~Kl~~ 112 (230)
+ +.+|+.+-|.+
T Consensus 359 ~----S~eeln~vL~~ 370 (508)
T KOG1365|consen 359 C----SVEELNEVLSG 370 (508)
T ss_pred c----cHHHHHHHHhc
Confidence 6 77788765544
No 124
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.07 E-value=0.03 Score=47.27 Aligned_cols=71 Identities=24% Similarity=0.302 Sum_probs=53.3
Q ss_pred CCCCeEEEcCCCCCCC-----H----HHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963 18 DESRYLIVRNVPSLGC-----G----DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~t-----e----edL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~ 88 (230)
.+..++.|+=+.+... . .+|.+.|+.||+|.=++...+ .-||+|.+-++|-+|+ .|||..+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEEC
Confidence 4566777766552111 1 478899999999998887754 5899999999999885 68999999
Q ss_pred CceeEEEec
Q 026963 89 GNRLKVSYA 97 (230)
Q Consensus 89 Gr~L~VsyA 97 (230)
|+.|+|..-
T Consensus 96 g~~l~i~LK 104 (146)
T PF08952_consen 96 GRTLKIRLK 104 (146)
T ss_dssp TEEEEEEE-
T ss_pred CEEEEEEeC
Confidence 999999975
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.96 E-value=0.0096 Score=57.41 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=63.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCC---CCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAE---DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~---~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
..|-|-||.+..+.++++.||+-.|+|.++.++... .+....-.|||.|.|...+..| ..|-++.|-|+.|.|--+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEec
Confidence 368899999999999999999999999999987632 3345567899999999999888 567778888888776644
No 126
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.84 E-value=0.037 Score=43.04 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=40.8
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC
Q 026963 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE 84 (230)
Q Consensus 23 LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG 84 (230)
.+|. .|...-..||.+||+.||.|. |.-+.| .-|||...+.+.|..|+..++-
T Consensus 12 Fhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 12 FHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 4455 999999999999999999997 444454 3699999999999999999963
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.67 E-value=0.0042 Score=58.26 Aligned_cols=76 Identities=21% Similarity=0.223 Sum_probs=60.4
Q ss_pred CeEEEcCCCCCCC-HHHHH--HhhccCCcceEEEeecCCC----CCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 21 RYLIVRNVPSLGC-GDDLL--KLFATYGDIEECKPMDAED----CDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 21 ~~LyV~NLP~~~t-eedL~--~LFS~fG~I~~v~il~d~~----tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
.-+||-+||...- +..|. +-|++||.|.++.+-.+.. .+-+. -++|+|+..++|..||...+|....|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4577888886543 34455 6699999999999887652 12222 389999999999999999999999999988
Q ss_pred EEec
Q 026963 94 VSYA 97 (230)
Q Consensus 94 VsyA 97 (230)
.+|.
T Consensus 157 a~~g 160 (327)
T KOG2068|consen 157 ASLG 160 (327)
T ss_pred HhhC
Confidence 8887
No 128
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.028 Score=55.56 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=54.6
Q ss_pred eccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeec--CCCCCCcee---EEEEEEccHhHHHHHHHHhcCceeCC
Q 026963 15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMD--AEDCDPFTD---VYFIKFRLFSNARFAKRKLDEFVFLG 89 (230)
Q Consensus 15 tv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~--d~~tgksrG---~AFV~F~d~edA~~A~~~LnG~~f~G 89 (230)
....=|+.+||++||++++|++|...|.+||.+.-==..+ ...-..++| |+|+.|++..+.+.-+.+. .+.+
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~~~ 330 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SEGE 330 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hhcc
Confidence 3344478999999999999999999999999986211101 111234567 9999999998887655554 3344
Q ss_pred ceeEEEe
Q 026963 90 NRLKVSY 96 (230)
Q Consensus 90 r~L~Vsy 96 (230)
..+.++.
T Consensus 331 ~~~yf~v 337 (520)
T KOG0129|consen 331 GNYYFKV 337 (520)
T ss_pred cceEEEE
Confidence 4444433
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.80 E-value=0.0013 Score=63.80 Aligned_cols=78 Identities=29% Similarity=0.416 Sum_probs=67.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.|+.+-|+|+|+...++-|..|..+||.++.|..+.. ..-+-+--|+|...+.++.|+..|+|..|....++|.|-|
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 4677999999999999999999999999999976432 2223456788999999999999999999999999999997
Q ss_pred C
Q 026963 99 Q 99 (230)
Q Consensus 99 e 99 (230)
+
T Consensus 156 d 156 (584)
T KOG2193|consen 156 D 156 (584)
T ss_pred h
Confidence 5
No 130
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.59 E-value=0.15 Score=37.25 Aligned_cols=53 Identities=23% Similarity=0.222 Sum_probs=44.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccC----CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATY----GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~f----G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L 82 (230)
..|+|+||. ..+.+|++..|..| |+. .|.-+.|. -|=|.|.+.+.|..|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 469999997 58999999999999 544 57777773 4889999999999999875
No 131
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.31 E-value=0.1 Score=50.55 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=46.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcc----eEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDI----EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I----~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L 82 (230)
.|..|+||++.++.|+.+.|.+--+| +.|-.+. +..|+.+|=|||.|...++|+.|+.+=
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~-rpdgrpTGdAFvlfa~ee~aq~aL~kh 226 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT-RPDGRPTGDAFVLFACEEDAQFALRKH 226 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE-CCCCCcccceEEEecCHHHHHHHHHHH
Confidence 45679999999999999999754333 3444333 334899999999999999999998753
No 132
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.26 E-value=0.062 Score=54.25 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=59.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhc-cCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC---CceeEE
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFA-TYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL---GNRLKV 94 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS-~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~---Gr~L~V 94 (230)
.|..|||.||-.-.|.-.|+.|++ ..|.|++. -| | +-+-.|||.|.+.++|..-..+|||..+- ++-|-+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 467899999987789999999999 55555555 33 2 23457999999999999999999999873 567999
Q ss_pred Eec
Q 026963 95 SYA 97 (230)
Q Consensus 95 syA 97 (230)
.|+
T Consensus 517 df~ 519 (718)
T KOG2416|consen 517 DFV 519 (718)
T ss_pred eec
Confidence 998
No 133
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.22 E-value=0.16 Score=37.43 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=45.5
Q ss_pred CCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963 32 GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (230)
Q Consensus 32 ~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V 94 (230)
.+-+|++..+-.|+-.. |+.|+ +| .||.|.+..+|++|.+..||..|.+..|..
T Consensus 12 ~~v~d~K~~Lr~y~~~~---I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 12 VTVEDFKKRLRKYRWDR---IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred ccHHHHHHHHhcCCcce---EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46699999999999865 44553 35 799999999999999999999999988765
No 134
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.19 E-value=0.14 Score=52.81 Aligned_cols=78 Identities=14% Similarity=0.052 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceE-EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEE-CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~-v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
-..+|||..||..+++.++.+.|..--.|++ |.|.. -.+++-++.|||.|..++.+..|..--.-+-+..+.|+|.-.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~-~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR-LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEecc-CCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 4568999999998888999999999999998 44444 356888999999999999888886554444444578888743
No 135
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.00 E-value=0.31 Score=45.90 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=56.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE-EEec
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK-VSYA 97 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~-VsyA 97 (230)
...+-|.+.|+ ....-+..+|++||.|.+...... | -+-+|.|...-+|++|+.+ ||+.|.|..+. |.-.
T Consensus 197 D~WVTVfGFpp-g~~s~vL~~F~~cG~Vvkhv~~~n---g---NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPP-GQVSIVLNLFSRCGEVVKHVTPSN---G---NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCc-cchhHHHHHHHhhCeeeeeecCCC---C---ceEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence 45788999997 567889999999999998876532 3 4899999999999999865 89999988643 5543
No 136
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.64 E-value=0.074 Score=55.52 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=58.4
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC--CceeEEEecC
Q 026963 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL--GNRLKVSYAS 98 (230)
Q Consensus 23 LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~--Gr~L~VsyA~ 98 (230)
.++.|.+-..+..-|..||+.||.|.+...+++- ..|.|.|...+.|..|.++|+|++.. |.|-+|.||.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3444445445567799999999999999988763 47999999999999999999999964 8899999993
No 137
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.55 E-value=0.25 Score=49.31 Aligned_cols=54 Identities=9% Similarity=-0.088 Sum_probs=43.6
Q ss_pred CCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC----CceeEEEec
Q 026963 44 YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL----GNRLKVSYA 97 (230)
Q Consensus 44 fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~----Gr~L~VsyA 97 (230)
.|.=.-+.++.|-.+....|||||.|.+++++..+.++.||+.+. .+.+.+.||
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYA 470 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYA 470 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehh
Confidence 555555556666566677899999999999999999999999864 367889999
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.33 E-value=0.046 Score=57.13 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.+++|+++||+...++.+|.-.|..||.|.+|.|-.... +.---||||.|.+...|-.|+-.+.|..+....+++-|.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 478999999999999999999999999999998755422 333458999999999999999999999887666666655
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.76 E-value=3.2 Score=33.23 Aligned_cols=76 Identities=18% Similarity=0.127 Sum_probs=55.5
Q ss_pred CCeEEE-cCCCCCCCHHHHHHhhccCCcce-EEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC---ceeEE
Q 026963 20 SRYLIV-RNVPSLGCGDDLLKLFATYGDIE-ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG---NRLKV 94 (230)
Q Consensus 20 S~~LyV-~NLP~~~teedL~~LFS~fG~I~-~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G---r~L~V 94 (230)
+..|.| -..|..+.-++|..+.+.+-... .++|++|. ...+=.+.++|.+.++|..-....||+.|.. ..+||
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chv 89 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHV 89 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEE
Confidence 344444 44555455577877777776654 67888763 3577789999999999999999999999975 34665
Q ss_pred Eec
Q 026963 95 SYA 97 (230)
Q Consensus 95 syA 97 (230)
-|-
T Consensus 90 vfV 92 (110)
T PF07576_consen 90 VFV 92 (110)
T ss_pred EEE
Confidence 554
No 140
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.06 E-value=0.44 Score=48.05 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=51.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhcc--CCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC--ceeCCceeE
Q 026963 22 YLIVRNVPSLGCGDDLLKLFAT--YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE--FVFLGNRLK 93 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~--fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG--~~f~Gr~L~ 93 (230)
.+++|-+|..+..|+++.||.- +-++++|...-+ .--||+|++..||+.|.+.|.. +.|.|++|.
T Consensus 177 IvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 177 IVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred EEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3566999998888999999986 678888876554 2369999999999999988865 347777643
No 141
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.31 E-value=0.32 Score=48.08 Aligned_cols=72 Identities=19% Similarity=0.130 Sum_probs=57.3
Q ss_pred CCeEEEcCCCCCC-CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 20 SRYLIVRNVPSLG-CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 20 S~~LyV~NLP~~~-teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.+.|-+.-.|... +-.+|...|.+||+|..|.+-.. -.-|.|+|....+|-.| .+..|..|.|+.|+|-|..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a-~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEA-YASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccch-hccccceecCceeEEEEec
Confidence 4456666666643 55899999999999999987554 24699999999999666 4678999999999999974
No 142
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.24 E-value=2.1 Score=43.42 Aligned_cols=83 Identities=22% Similarity=0.281 Sum_probs=64.2
Q ss_pred cCCCCeEEEcCCCCCCC-HHHHHHhhccC----CcceEEEeecCC----------CCCC---------------------
Q 026963 17 CDESRYLIVRNVPSLGC-GDDLLKLFATY----GDIEECKPMDAE----------DCDP--------------------- 60 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~t-eedL~~LFS~f----G~I~~v~il~d~----------~tgk--------------------- 60 (230)
..++++|-|-|+.|... -.||..+|+.| |.|.+|.|.... -+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45788999999999654 48999998877 589999886542 1121
Q ss_pred ----------------ceeEEEEEEccHhHHHHHHHHhcCceeCC--ceeEEEecCC
Q 026963 61 ----------------FTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVSYASQ 99 (230)
Q Consensus 61 ----------------srG~AFV~F~d~edA~~A~~~LnG~~f~G--r~L~VsyA~e 99 (230)
---||.|.|.+++.|..--..+||.+|.. ..|-+-|-|+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 12378999999999999999999999985 4555667775
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=84.64 E-value=0.55 Score=43.22 Aligned_cols=79 Identities=14% Similarity=-0.021 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
...++|++++.+...+.+...+|..+|.+..+..........++|++.+.|...+.+..|+...-.+...++.+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4678999999998888889999999999999888887788999999999999999999999887777888887776665
No 144
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=84.52 E-value=1.4 Score=35.78 Aligned_cols=80 Identities=20% Similarity=0.242 Sum_probs=61.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
..+..+++.|++......++..+|..+|.+....+...........+.++.+.....+..+..........+......++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKKILGRGPRKAFS 302 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccceeecccCcchhhc
Confidence 45678999999999999999999999999988887777665556667777777777777777776666666555544433
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.05 E-value=3.7 Score=40.60 Aligned_cols=76 Identities=22% Similarity=0.283 Sum_probs=62.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCc-ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC---ceeEEE
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGD-IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG---NRLKVS 95 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~-I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G---r~L~Vs 95 (230)
++.|.|-.+|..++-.||..+...|=+ |.++++++|. -.++=...|.|.+.++|..-...+||+.|.. ..+||-
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll 151 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLL 151 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEE
Confidence 678999999999999998888777654 6789999864 4566789999999999999999999999975 345555
Q ss_pred ec
Q 026963 96 YA 97 (230)
Q Consensus 96 yA 97 (230)
|.
T Consensus 152 ~V 153 (493)
T KOG0804|consen 152 YV 153 (493)
T ss_pred EE
Confidence 55
No 146
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=82.33 E-value=0.99 Score=46.11 Aligned_cols=78 Identities=19% Similarity=0.130 Sum_probs=66.6
Q ss_pred CcceeeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963 9 PGVRVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88 (230)
Q Consensus 9 ~avkvytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~ 88 (230)
++.-|++...+..++||+|+...+..+=+..+...+|-|.+++.+. |||+.|..+.-+..|+..+.-..+.
T Consensus 29 p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 29 PIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCC
Confidence 3444566677888999999998777777899999999999998764 8999999999999999999999998
Q ss_pred CceeEEE
Q 026963 89 GNRLKVS 95 (230)
Q Consensus 89 Gr~L~Vs 95 (230)
|..|.+.
T Consensus 100 ~~kl~~~ 106 (668)
T KOG2253|consen 100 DQKLIEN 106 (668)
T ss_pred cchhhcc
Confidence 8876654
No 147
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=79.46 E-value=4.5 Score=29.47 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=34.7
Q ss_pred CCCHHHHHHhhccCCcce-----EEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 31 LGCGDDLLKLFATYGDIE-----ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 31 ~~teedL~~LFS~fG~I~-----~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
..+..+|..++..-+.|. .+.+..+ |+||.-.. +.|..+++.|++..+.|+++.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 456788888887776664 4566543 78888654 4799999999999999999999865
No 148
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=70.01 E-value=5 Score=36.22 Aligned_cols=34 Identities=26% Similarity=0.181 Sum_probs=28.4
Q ss_pred EEEEEccHhHHHHHHHHhcCceeCCceeEEEecCCC
Q 026963 65 YFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQF 100 (230)
Q Consensus 65 AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~ 100 (230)
|||+|.+..+|..|.+.+.... ++.++|..||+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999776554 466799999863
No 149
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=66.60 E-value=21 Score=35.51 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=66.9
Q ss_pred cCCCCeEEEcCCCCCCC-HHHHHHhhccC----CcceEEEeecCC-----------------------------------
Q 026963 17 CDESRYLIVRNVPSLGC-GDDLLKLFATY----GDIEECKPMDAE----------------------------------- 56 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~t-eedL~~LFS~f----G~I~~v~il~d~----------------------------------- 56 (230)
.+++.+|-|-||.|... ..||..+|+.| |+|..|.|....
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 46788999999999655 48999999987 778888875431
Q ss_pred -----CCC------Cce-------------------eEEEEEEccHhHHHHHHHHhcCceeCC--ceeEEEecCCCCChH
Q 026963 57 -----DCD------PFT-------------------DVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVSYASQFESLA 104 (230)
Q Consensus 57 -----~tg------ksr-------------------G~AFV~F~d~edA~~A~~~LnG~~f~G--r~L~VsyA~e~Es~~ 104 (230)
+.| .-+ -||.|.+++++.+..-..+++|.++.. ..+-+-|-|+.-+..
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~~tfd 302 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDSLTFD 302 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCCCcccc
Confidence 000 112 278899999999999999999999875 567788888755444
No 150
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.48 E-value=1.9 Score=42.75 Aligned_cols=78 Identities=5% Similarity=-0.169 Sum_probs=62.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e 99 (230)
...++..+|..+.+++|.-+|.-||.|.-+..-.-...+...-.+||+-. ..+|..|+.-+--..++|..++|+.||+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhhhhhhhcCch
Confidence 34566788888899999999999999997766544444555667787754 4669999999998999999999999963
No 151
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=59.60 E-value=9.2 Score=33.77 Aligned_cols=73 Identities=19% Similarity=0.144 Sum_probs=54.9
Q ss_pred CCeEEEcCCCCCC-CH----HHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc-eeE
Q 026963 20 SRYLIVRNVPSLG-CG----DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-RLK 93 (230)
Q Consensus 20 S~~LyV~NLP~~~-te----edL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr-~L~ 93 (230)
...+.+.+++..+ ++ .....||-+|-+..-..+++ +.+.--|.|.+++.|..|.-.+++..|.|+ .|+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 4567888888643 22 33567788777766555543 345677899999999999999999999999 888
Q ss_pred EEecC
Q 026963 94 VSYAS 98 (230)
Q Consensus 94 VsyA~ 98 (230)
.=||+
T Consensus 84 ~yfaQ 88 (193)
T KOG4019|consen 84 LYFAQ 88 (193)
T ss_pred EEEcc
Confidence 88884
No 152
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=53.53 E-value=17 Score=29.26 Aligned_cols=49 Identities=20% Similarity=0.361 Sum_probs=28.5
Q ss_pred eEEEcCCCCCC---------CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHh
Q 026963 22 YLIVRNVPSLG---------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFS 73 (230)
Q Consensus 22 ~LyV~NLP~~~---------teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~e 73 (230)
..+|-|+|... ..++|.+.|+.|.+++ ++.+.++ .-.+|++.|.|..--
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCCh
Confidence 46777886432 3478999999999986 6666654 357899999998843
No 153
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=48.15 E-value=23 Score=33.62 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=49.5
Q ss_pred CCeEEEcCCCCCC------------CHHHHHHhhccCCcceEEEeec-CC----CCC-----CceeEEE---------EE
Q 026963 20 SRYLIVRNVPSLG------------CGDDLLKLFATYGDIEECKPMD-AE----DCD-----PFTDVYF---------IK 68 (230)
Q Consensus 20 S~~LyV~NLP~~~------------teedL~~LFS~fG~I~~v~il~-d~----~tg-----ksrG~AF---------V~ 68 (230)
..++|+-+||-.+ .++-|...|..||.|..|.|+- |+ -+| .+.||+| |+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 4588888888422 3466999999999999887743 22 122 2556654 45
Q ss_pred EccHhHHHHHHHHhcCcee--------CCceeEEEecC
Q 026963 69 FRLFSNARFAKRKLDEFVF--------LGNRLKVSYAS 98 (230)
Q Consensus 69 F~d~edA~~A~~~LnG~~f--------~Gr~L~VsyA~ 98 (230)
|....--..|+..|-|..+ +--.++|+|..
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdr 266 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDR 266 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccch
Confidence 5444444566666666553 22357777763
No 154
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.00 E-value=29 Score=34.30 Aligned_cols=54 Identities=26% Similarity=0.209 Sum_probs=44.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcc-eEEEeecCCCCCCceeEEEEEEccHhHHHHHHHH
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDI-EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I-~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~ 81 (230)
.-|-|.++|...-.+||..+|++||.= -+|+-+.| -.||-.|.....|..|+-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 357799999988899999999999975 34555655 3799999999999998865
No 155
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=42.86 E-value=33 Score=32.35 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=42.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCC-------CCCCceeEEEEEEccHhHH
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAE-------DCDPFTDVYFIKFRLFSNA 75 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~-------~tgksrG~AFV~F~d~edA 75 (230)
++.|...||...++=-++...|..||+|++|.++.+. +..+..--..+.|-+.+..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~C 77 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREIC 77 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHH
Confidence 5778899999777778888999999999999999875 1123334567777776543
No 156
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=40.64 E-value=8.1 Score=35.33 Aligned_cols=162 Identities=13% Similarity=0.102 Sum_probs=93.2
Q ss_pred eEEEcC----CCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee----------
Q 026963 22 YLIVRN----VPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF---------- 87 (230)
Q Consensus 22 ~LyV~N----LP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f---------- 87 (230)
++.-+| |....+++.++..|+.-|+|..+++..+.+ +..+-++|+.+-.....-.|.+..+|.+.
T Consensus 82 ~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ggk 160 (267)
T KOG4454|consen 82 TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTIGGK 160 (267)
T ss_pred ccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCCCcccccc
Confidence 444455 445567788999999999999999998877 78889999999999998888888777664
Q ss_pred -CCceeEEEe-cCCCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccCCCCCCC-CCCCCcchhhhhhhhccccc
Q 026963 88 -LGNRLKVSY-ASQFESLADTKDKLETRRKEVLARLNSGRSKVPNIHSSVDLGEPSLVT-APLQPNLVSEQITSWQRASS 164 (230)
Q Consensus 88 -~Gr~L~Vsy-A~e~Es~~d~r~Kl~~rr~ev~~Rl~~n~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 164 (230)
.|++|--++ .|...+.+.+..++. +..+ +++........ ..+.|-.-. --.|-|.-.|.-++.-|...
T Consensus 161 ~Gg~~lpqsgfsPs~~~hsh~~NQ~m------~~q~--~q~sPssqrk~-r~~~~~~h~drhYdR~~~~h~~~~drr~~~ 231 (267)
T KOG4454|consen 161 QGGKQLPQSGFSPSAYNHSHLRNQFM------MEQL--PQPSPSSQRKL-RHARHSLHNDRHYDRNPFGHNADQDRRSDS 231 (267)
T ss_pred cCCCcCCcccCCccccchHHHHHHHH------HHhc--cCCCCcccchh-cccCcccccCCccccccccccccccccccc
Confidence 445555443 344555665554432 2222 22322222111 122232211 12344444555555444434
Q ss_pred ccccccccCCCCceeeccCcccccccCchh
Q 026963 165 ESQRISHVNESPITRVSSDKDYFASQSMNQ 194 (230)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (230)
.++.+.- -+++-++.+|+-+=|-+.+++.
T Consensus 232 ~~~d~~~-~~~~~~~w~~~~gnrr~~~r~~ 260 (267)
T KOG4454|consen 232 SVMDRNR-LKPQQHHWHMQGGNRRSDQRSN 260 (267)
T ss_pred chhhhhh-ccCCCcchhhccCcccchhhcc
Confidence 4444332 2455555555555555555443
No 157
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.00 E-value=6.5 Score=39.95 Aligned_cols=77 Identities=17% Similarity=0.096 Sum_probs=62.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.|+++|+++..+-.+|..+++.+--+..+.+-.+-.-..+..++||+|.---+-.-|+-+|||..+....+.-+-++
T Consensus 233 sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~se~en~ 309 (648)
T KOG2295|consen 233 SLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLSESENP 309 (648)
T ss_pred HHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccccccccc
Confidence 58999999999999999999999988888776654446777899999998888888888899988876665544443
No 158
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=37.08 E-value=64 Score=23.73 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=21.6
Q ss_pred HHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEc
Q 026963 35 DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFR 70 (230)
Q Consensus 35 edL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~ 70 (230)
.+|++.||..|+|.-+-+ ....+...+=.|=|.|+
T Consensus 9 ~~iR~~fs~lG~I~vLYv-n~~eS~~~~~~GGvV~e 43 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV-NPYESDEDRLTGGVVME 43 (62)
T ss_pred HHHHHHHHhcCcEEEEEE-cccccCCCeEeccEEEe
Confidence 689999999999986554 33333333333444444
No 159
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.10 E-value=28 Score=32.06 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=32.5
Q ss_pred eccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEe
Q 026963 15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKP 52 (230)
Q Consensus 15 tv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~i 52 (230)
+...+..+||+-|||..++++-|..+.++.|.+..+-.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 44567899999999999999999999999998776543
No 160
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=33.80 E-value=1.2e+02 Score=29.92 Aligned_cols=63 Identities=22% Similarity=0.213 Sum_probs=43.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhc----cCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFA----TYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD 83 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS----~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln 83 (230)
+..+.++.-......-+|..+|- .+|-|+++.+-..+. .+.+...++.|.+.++|..|+..+-
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 34444443222233467888776 899999987755433 3456788999999999999998864
No 161
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=33.15 E-value=10 Score=37.20 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=51.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
.++++|++|+..+...++-++|..||+|.-....- +.-.-++.|.|....+...|.+ ++|.+|.-....
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr 219 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSR 219 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhh
Confidence 47899999999999999999999999997554432 2223456689988888888865 467777643333
No 162
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=31.57 E-value=54 Score=26.60 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=15.0
Q ss_pred ceeEEEEEEccHhHHHHHHHHh
Q 026963 61 FTDVYFIKFRLFSNARFAKRKL 82 (230)
Q Consensus 61 srG~AFV~F~d~edA~~A~~~L 82 (230)
---|+|++|.+.+++..|..++
T Consensus 65 ~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 65 EVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEEcCchhHHHHHHHHh
Confidence 3457888888877766666544
No 163
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=29.09 E-value=1.3e+02 Score=24.92 Aligned_cols=50 Identities=8% Similarity=-0.136 Sum_probs=35.8
Q ss_pred HHHHHhhccCCc-ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce-eCC
Q 026963 35 DDLLKLFATYGD-IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV-FLG 89 (230)
Q Consensus 35 edL~~LFS~fG~-I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~-f~G 89 (230)
+.|.......|- |.+|.++.. +.||-||+....+++..+++.+.|.. |.|
T Consensus 23 ~~L~~~~~~~~~~i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~v~g~lg 74 (153)
T PRK08559 23 LMLAMRAKKENLPIYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPHVRGVVP 74 (153)
T ss_pred HHHHHHHHhCCCcEEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCCEeeeCC
Confidence 445555543332 666666643 78999999998999999999998754 555
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=26.73 E-value=54 Score=30.50 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=25.2
Q ss_pred HhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963 72 FSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (230)
Q Consensus 72 ~edA~~A~~~LnG~~f~Gr~L~VsyA~e 99 (230)
..-|..|++.|||....|+.|+|-||+.
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~ 31 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMH 31 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeecc
Confidence 3468999999999999999999999975
No 165
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=25.73 E-value=34 Score=33.61 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=47.3
Q ss_pred CeEEEcCCCCCCCH--------HHHHHhhcc--CCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHH
Q 026963 21 RYLIVRNVPSLGCG--------DDLLKLFAT--YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79 (230)
Q Consensus 21 ~~LyV~NLP~~~te--------edL~~LFS~--fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~ 79 (230)
+.+|+.+.+...+. +++...|.. .|++..+..-.+.....++|-.|++|...+.|+.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 46777777765444 589999999 788888877777656789999999999999999665
No 166
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=22.50 E-value=52 Score=25.51 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=18.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhh
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLF 41 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LF 41 (230)
..++|.|.|||....+++|.+..
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 35689999999988888887654
No 167
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=21.70 E-value=3.2e+02 Score=27.62 Aligned_cols=51 Identities=22% Similarity=0.137 Sum_probs=38.5
Q ss_pred CCHHHHHHhh----ccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc
Q 026963 32 GCGDDLLKLF----ATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD 83 (230)
Q Consensus 32 ~teedL~~LF----S~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln 83 (230)
...-||..+| +.+|-|+++.+-..+. ...+..+++.|.+.++|..|+..+-
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p~-P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQKI-PQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeecC-CcceEEEEEEcCCHHHHHHHHHHHH
Confidence 3446788885 6799999998754432 3456788999999999999888754
Done!