Query 026963
Match_columns 230
No_of_seqs 177 out of 1184
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:12:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 6.3E-24 2.2E-28 161.0 11.3 82 18-99 17-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 1.2E-22 4.2E-27 157.0 11.9 81 18-98 4-84 (110)
3 2lxi_A RNA-binding protein 10; 99.9 3.8E-23 1.3E-27 154.0 6.1 80 20-99 1-82 (91)
4 3md1_A Nuclear and cytoplasmic 99.9 8.3E-22 2.9E-26 141.3 11.1 80 20-99 1-80 (83)
5 3mdf_A Peptidyl-prolyl CIS-tra 99.9 5.6E-22 1.9E-26 142.8 9.7 81 17-97 4-84 (85)
6 2x1f_A MRNA 3'-END-processing 99.9 1.4E-21 4.6E-26 144.9 11.4 82 19-100 1-82 (96)
7 2dnz_A Probable RNA-binding pr 99.9 1.4E-21 4.6E-26 143.8 11.3 82 18-99 3-84 (95)
8 1whw_A Hypothetical protein ri 99.9 1.3E-21 4.5E-26 145.2 11.0 83 17-99 5-87 (99)
9 1b7f_A Protein (SXL-lethal pro 99.9 1.9E-23 6.6E-28 164.7 1.0 163 19-197 2-166 (168)
10 4f25_A Polyadenylate-binding p 99.9 6.3E-22 2.1E-26 152.6 9.3 79 19-99 4-82 (115)
11 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.5E-21 5.1E-26 141.1 10.5 81 18-98 4-84 (87)
12 2e5h_A Zinc finger CCHC-type a 99.9 1.6E-21 5.5E-26 143.1 10.0 81 17-97 13-93 (94)
13 2lkz_A RNA-binding protein 5; 99.9 7.3E-22 2.5E-26 149.9 8.4 80 19-98 8-93 (95)
14 1fxl_A Paraneoplastic encephal 99.9 4.9E-23 1.7E-27 161.4 1.8 162 19-196 1-164 (167)
15 2cqc_A Arginine/serine-rich sp 99.9 1.7E-21 5.9E-26 142.9 10.0 82 17-98 12-93 (95)
16 1x5t_A Splicing factor 3B subu 99.9 1.5E-21 5.2E-26 143.7 9.4 82 18-99 3-85 (96)
17 2cq0_A Eukaryotic translation 99.9 2.5E-21 8.5E-26 144.9 10.6 82 18-99 13-94 (103)
18 3ns6_A Eukaryotic translation 99.9 8.7E-22 3E-26 148.4 7.9 79 19-97 5-90 (100)
19 2do4_A Squamous cell carcinoma 99.9 4.5E-21 1.5E-25 142.8 11.6 83 16-99 13-95 (100)
20 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2E-21 7E-26 144.8 9.3 83 17-99 9-91 (102)
21 2dgs_A DAZ-associated protein 99.9 4.9E-21 1.7E-25 142.4 11.2 80 18-98 8-87 (99)
22 2dnm_A SRP46 splicing factor; 99.9 2.9E-21 1E-25 144.5 10.0 82 18-99 11-92 (103)
23 1p27_B RNA-binding protein 8A; 99.9 3.2E-21 1.1E-25 144.7 10.2 82 17-98 20-101 (106)
24 2la6_A RNA-binding protein FUS 99.8 4.2E-21 1.4E-25 143.0 10.6 81 17-97 10-98 (99)
25 1x5u_A Splicing factor 3B subu 99.8 4.1E-21 1.4E-25 143.9 10.6 82 17-98 12-93 (105)
26 1x5s_A Cold-inducible RNA-bind 99.8 2.4E-21 8.1E-26 144.5 9.2 82 17-98 9-90 (102)
27 2div_A TRNA selenocysteine ass 99.8 3.3E-21 1.1E-25 143.0 9.8 83 17-99 6-93 (99)
28 3p5t_L Cleavage and polyadenyl 99.8 9.3E-22 3.2E-26 144.8 6.6 78 21-98 2-81 (90)
29 2dgo_A Cytotoxic granule-assoc 99.8 7.7E-21 2.6E-25 144.8 11.6 81 18-98 13-93 (115)
30 1x4h_A RNA-binding protein 28; 99.8 6.2E-21 2.1E-25 143.9 10.9 83 17-99 12-100 (111)
31 2cpf_A RNA binding motif prote 99.8 4.1E-21 1.4E-25 142.3 9.6 81 18-98 3-86 (98)
32 2cpz_A CUG triplet repeat RNA- 99.8 5.4E-21 1.8E-25 145.9 10.5 81 18-98 23-103 (115)
33 1p1t_A Cleavage stimulation fa 99.8 2.8E-21 9.7E-26 144.2 8.7 81 19-99 7-87 (104)
34 2cph_A RNA binding motif prote 99.8 7.9E-21 2.7E-25 142.4 10.7 82 18-99 13-96 (107)
35 1oo0_B CG8781-PA, drosophila Y 99.8 5.8E-21 2E-25 144.4 10.1 81 18-98 24-104 (110)
36 4a8x_A RNA-binding protein wit 99.8 4.7E-21 1.6E-25 138.5 9.1 81 18-98 2-83 (88)
37 3ulh_A THO complex subunit 4; 99.8 9.4E-21 3.2E-25 142.3 10.7 80 18-98 27-106 (107)
38 2dnh_A Bruno-like 5, RNA bindi 99.8 1.4E-20 4.8E-25 140.9 11.4 80 18-98 13-95 (105)
39 2d9p_A Polyadenylate-binding p 99.8 1.2E-20 4.3E-25 141.1 10.8 79 18-98 13-91 (103)
40 2ywk_A Putative RNA-binding pr 99.8 8.9E-21 3E-25 139.4 9.8 80 18-98 14-93 (95)
41 2dgp_A Bruno-like 4, RNA bindi 99.8 7.9E-21 2.7E-25 142.5 9.5 81 18-98 11-94 (106)
42 2khc_A Testis-specific RNP-typ 99.8 7E-21 2.4E-25 145.6 9.3 80 18-97 38-117 (118)
43 3ucg_A Polyadenylate-binding p 99.8 9.4E-21 3.2E-25 137.4 9.4 79 19-98 5-83 (89)
44 3s7r_A Heterogeneous nuclear r 99.8 1.8E-20 6E-25 136.1 10.8 79 18-97 9-87 (87)
45 3n9u_C Cleavage and polyadenyl 99.8 2E-20 6.9E-25 153.0 12.4 79 19-97 54-134 (156)
46 2jrs_A RNA-binding protein 39; 99.8 1.2E-20 4.2E-25 144.3 9.8 83 17-99 23-105 (108)
47 2cpe_A RNA-binding protein EWS 99.8 1.5E-20 5.1E-25 142.8 10.1 81 18-98 13-101 (113)
48 2mss_A Protein (musashi1); RNA 99.8 6E-21 2.1E-25 135.0 7.3 75 22-97 1-75 (75)
49 1s79_A Lupus LA protein; RRM, 99.8 5.2E-21 1.8E-25 146.5 7.4 82 14-97 5-86 (103)
50 1x4e_A RNA binding motif, sing 99.8 2.4E-21 8.2E-26 140.1 5.1 81 17-97 2-82 (85)
51 2fy1_A RNA-binding motif prote 99.8 2.2E-20 7.5E-25 144.6 10.8 81 17-98 4-84 (116)
52 2cqp_A RNA-binding protein 12; 99.8 9.5E-21 3.3E-25 140.3 8.3 81 18-98 13-93 (98)
53 2dng_A Eukaryotic translation 99.8 2.7E-20 9.1E-25 139.6 10.8 80 18-99 13-92 (103)
54 3ex7_B RNA-binding protein 8A; 99.8 1.4E-20 4.9E-25 145.4 9.5 82 17-98 19-100 (126)
55 2nlw_A Eukaryotic translation 99.8 1.4E-20 4.9E-25 142.5 9.4 83 17-101 12-101 (105)
56 2dgv_A HnRNP M, heterogeneous 99.8 2.4E-20 8.3E-25 136.3 10.0 81 17-99 5-85 (92)
57 2dhg_A TRNA selenocysteine ass 99.8 1.6E-20 5.4E-25 140.4 9.0 81 17-98 6-88 (104)
58 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.1E-20 7.1E-25 145.6 10.0 80 18-97 61-140 (140)
59 2ek1_A RNA-binding protein 12; 99.8 9E-21 3.1E-25 139.4 7.5 79 19-97 14-92 (95)
60 1u6f_A Tcubp1, RNA-binding pro 99.8 2.3E-20 7.9E-25 146.5 10.3 81 18-98 40-120 (139)
61 1wi8_A EIF-4B, eukaryotic tran 99.8 2.9E-20 1E-24 139.5 10.2 80 18-99 13-93 (104)
62 2do0_A HnRNP M, heterogeneous 99.8 5.2E-20 1.8E-24 139.7 11.5 81 17-98 12-92 (114)
63 2cq4_A RNA binding motif prote 99.8 1.7E-20 5.7E-25 143.0 8.7 78 19-97 24-101 (114)
64 3r27_A HnRNP L, heterogeneous 99.8 2.4E-20 8.2E-25 144.6 9.7 79 15-99 16-96 (100)
65 2dgx_A KIAA0430 protein; RRM d 99.8 2.1E-20 7.2E-25 139.3 9.1 79 18-99 7-89 (96)
66 2qfj_A FBP-interacting repress 99.8 1.1E-21 3.9E-26 160.7 2.4 166 19-189 27-194 (216)
67 2kxn_B Transformer-2 protein h 99.8 1.9E-20 6.6E-25 148.1 9.1 84 16-99 42-125 (129)
68 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.5E-20 1.9E-24 147.4 11.9 82 18-99 37-118 (156)
69 4f02_A Polyadenylate-binding p 99.8 1.8E-21 6.2E-26 163.0 3.4 163 18-198 13-177 (213)
70 2dh8_A DAZ-associated protein 99.8 2.1E-20 7E-25 140.3 8.7 81 17-98 13-93 (105)
71 2dis_A Unnamed protein product 99.8 2.4E-20 8.3E-25 140.5 9.1 82 18-99 6-91 (109)
72 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.6E-20 1.9E-24 137.5 10.8 80 17-98 12-91 (103)
73 2cq3_A RNA-binding protein 9; 99.8 8.7E-20 3E-24 136.5 11.9 80 17-98 12-91 (103)
74 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.4E-20 4.8E-25 133.2 7.1 76 21-97 1-76 (77)
75 2cqd_A RNA-binding region cont 99.8 3.9E-20 1.3E-24 141.4 10.0 79 18-97 15-93 (116)
76 3lqv_A PRE-mRNA branch site pr 99.8 3E-20 1E-24 141.5 9.3 79 17-98 5-83 (115)
77 2krb_A Eukaryotic translation 99.8 1.1E-20 3.8E-25 136.3 6.5 74 20-95 1-81 (81)
78 2m2b_A RNA-binding protein 10; 99.8 1.1E-20 3.9E-25 148.3 6.5 80 18-98 21-106 (131)
79 2kt5_A RNA and export factor-b 99.8 5.1E-20 1.7E-24 142.5 10.1 81 17-98 32-112 (124)
80 2kn4_A Immunoglobulin G-bindin 99.8 4.7E-20 1.6E-24 147.3 10.2 82 18-99 68-149 (158)
81 2ki2_A SS-DNA binding protein 99.8 8.2E-21 2.8E-25 138.6 5.3 77 21-98 2-78 (90)
82 1l3k_A Heterogeneous nuclear r 99.8 1.1E-21 3.9E-26 158.5 0.6 161 18-190 11-173 (196)
83 2a3j_A U1 small nuclear ribonu 99.8 2.5E-20 8.7E-25 148.5 8.3 78 18-98 27-108 (127)
84 1x4d_A Matrin 3; structural ge 99.8 2.4E-20 8.4E-25 144.0 7.6 76 18-99 13-91 (102)
85 1x5o_A RNA binding motif, sing 99.8 1.1E-19 3.6E-24 138.3 10.8 80 18-98 23-110 (114)
86 2cpi_A CCR4-NOT transcription 99.8 4.1E-20 1.4E-24 141.3 8.4 80 19-98 14-99 (111)
87 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.5E-20 1.2E-24 139.1 7.9 81 17-99 16-97 (100)
88 1wel_A RNA-binding protein 12; 99.8 4.8E-20 1.7E-24 143.2 8.8 80 17-97 22-101 (124)
89 2jwn_A Embryonic polyadenylate 99.8 4.8E-20 1.6E-24 142.1 8.6 79 19-98 35-113 (124)
90 1x4a_A Splicing factor, argini 99.8 1.1E-19 3.9E-24 137.4 10.5 79 17-98 19-97 (109)
91 2cqg_A TDP-43, TAR DNA-binding 99.8 1.5E-19 5.3E-24 135.1 11.1 80 18-99 13-92 (103)
92 1sjq_A Polypyrimidine tract-bi 99.8 4.3E-20 1.5E-24 144.2 8.2 77 17-99 13-91 (105)
93 2cq1_A PTB-like protein L; RRM 99.8 1.5E-19 5.1E-24 138.7 10.6 77 17-99 12-90 (101)
94 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.3E-19 4.5E-24 147.3 10.7 80 19-98 71-150 (165)
95 2rs2_A Musashi-1, RNA-binding 99.8 1.2E-19 4.1E-24 138.8 9.8 85 14-99 19-103 (109)
96 1nu4_A U1A RNA binding domain; 99.8 5.2E-20 1.8E-24 135.8 7.5 79 18-99 6-88 (97)
97 1x4b_A Heterogeneous nuclear r 99.8 1.4E-19 4.7E-24 138.3 9.8 80 19-99 26-105 (116)
98 3egn_A RNA-binding protein 40; 99.8 1.9E-20 6.7E-25 148.1 5.2 92 13-104 38-134 (143)
99 2dgw_A Probable RNA-binding pr 99.8 2.9E-19 9.9E-24 130.9 10.9 79 18-99 8-86 (91)
100 3md3_A Nuclear and cytoplasmic 99.8 2.6E-19 8.9E-24 140.0 11.2 81 18-98 85-165 (166)
101 2cpx_A Hypothetical protein FL 99.8 3.2E-20 1.1E-24 141.1 5.7 87 12-98 17-103 (115)
102 1iqt_A AUF1, heterogeneous nuc 99.8 3.9E-20 1.3E-24 130.5 5.7 75 22-97 1-75 (75)
103 1why_A Hypothetical protein ri 99.8 2.3E-19 7.8E-24 133.1 10.0 80 14-99 11-92 (97)
104 2wbr_A GW182, gawky, LD47780P; 99.8 6.7E-20 2.3E-24 140.3 7.2 73 19-97 6-78 (89)
105 1wex_A Hypothetical protein (r 99.8 1.6E-19 5.5E-24 139.0 9.3 76 17-98 12-89 (104)
106 3md3_A Nuclear and cytoplasmic 99.8 5.6E-21 1.9E-25 149.5 1.1 154 21-189 1-156 (166)
107 3q2s_C Cleavage and polyadenyl 99.8 1.3E-19 4.6E-24 156.2 9.5 84 14-97 62-147 (229)
108 2cpy_A RNA-binding protein 12; 99.8 1.1E-19 3.8E-24 139.5 8.0 80 16-97 11-91 (114)
109 2fc9_A NCL protein; structure 99.8 3E-19 1E-23 133.1 10.0 79 17-99 12-90 (101)
110 2err_A Ataxin-2-binding protei 99.8 2.1E-19 7.3E-24 137.2 9.3 79 18-98 27-105 (109)
111 2lea_A Serine/arginine-rich sp 99.8 7E-20 2.4E-24 145.7 6.8 82 18-99 45-126 (135)
112 2ad9_A Polypyrimidine tract-bi 99.8 2.1E-19 7.1E-24 142.8 9.4 77 17-99 28-106 (119)
113 2db1_A Heterogeneous nuclear r 99.8 7E-19 2.4E-23 136.5 12.2 79 17-97 14-95 (118)
114 3nmr_A Cugbp ELAV-like family 99.8 3.8E-21 1.3E-25 152.1 -0.7 163 18-196 1-171 (175)
115 2g4b_A Splicing factor U2AF 65 99.8 4.6E-19 1.6E-23 140.4 10.5 79 19-97 93-171 (172)
116 1wg5_A Heterogeneous nuclear r 99.8 4.2E-19 1.4E-23 134.2 9.8 79 18-98 13-92 (104)
117 2dnq_A RNA-binding protein 4B; 99.8 5.8E-19 2E-23 129.3 9.6 74 17-98 5-78 (90)
118 1fj7_A Nucleolin RBD1, protein 99.8 3.4E-20 1.2E-24 138.2 3.1 80 18-99 15-94 (101)
119 2cpj_A Non-POU domain-containi 99.8 5.3E-19 1.8E-23 131.6 9.5 76 18-99 13-88 (99)
120 2ytc_A PRE-mRNA-splicing facto 99.8 4.6E-19 1.6E-23 127.7 8.9 74 18-97 10-84 (85)
121 2cjk_A Nuclear polyadenylated 99.8 2.3E-20 7.7E-25 147.3 1.8 152 19-189 2-155 (167)
122 1whx_A Hypothetical protein ri 99.8 2.9E-19 1E-23 137.3 7.9 75 19-99 9-83 (111)
123 1wez_A HnRNP H', FTP-3, hetero 99.8 5.7E-19 2E-23 134.3 9.3 80 17-99 12-91 (102)
124 1x4c_A Splicing factor, argini 99.8 1E-18 3.5E-23 132.7 10.6 75 18-99 13-92 (108)
125 2pe8_A Splicing factor 45; RRM 99.8 1E-18 3.5E-23 134.7 10.6 82 17-98 5-92 (105)
126 2la4_A Nuclear and cytoplasmic 99.8 4.2E-19 1.4E-23 132.3 8.0 74 19-98 26-99 (101)
127 2j8a_A Histone-lysine N-methyl 99.8 8.6E-19 2.9E-23 143.3 10.5 108 21-129 3-124 (136)
128 2fc8_A NCL protein; structure 99.8 1.1E-18 3.9E-23 129.9 10.3 79 17-98 12-90 (102)
129 1x4g_A Nucleolysin TIAR; struc 99.8 7.5E-19 2.6E-23 133.1 9.5 76 18-99 23-98 (109)
130 2lmi_A GRSF-1, G-rich sequence 99.8 4.9E-19 1.7E-23 134.5 8.0 79 17-97 8-89 (107)
131 1x4f_A Matrin 3; structural ge 99.8 3.4E-19 1.2E-23 140.3 7.3 77 17-99 22-101 (112)
132 2lcw_A RNA-binding protein FUS 99.6 2E-20 6.7E-25 143.3 0.0 80 18-97 5-92 (116)
133 2qfj_A FBP-interacting repress 99.8 1.5E-18 5.1E-23 142.1 11.0 81 18-98 123-203 (216)
134 2xs2_A Deleted in azoospermia- 99.8 5.1E-19 1.7E-23 132.1 7.4 77 19-98 8-84 (102)
135 2kvi_A Nuclear polyadenylated 99.8 8E-19 2.7E-23 130.5 8.3 76 16-99 6-82 (96)
136 2hvz_A Splicing factor, argini 99.8 5.8E-19 2E-23 131.5 7.6 73 21-98 1-73 (101)
137 1b7f_A Protein (SXL-lethal pro 99.8 1.9E-18 6.4E-23 136.1 10.9 80 18-97 87-168 (168)
138 2xnq_A Nuclear polyadenylated 99.8 1.7E-18 5.8E-23 129.9 10.2 76 15-98 17-93 (97)
139 2e5j_A Methenyltetrahydrofolat 99.8 7.2E-19 2.5E-23 130.7 8.0 78 17-99 16-93 (97)
140 2i2y_A Fusion protein consists 99.8 9.6E-19 3.3E-23 139.3 9.3 78 17-99 70-147 (150)
141 1fjc_A Nucleolin RBD2, protein 99.8 4.6E-19 1.6E-23 130.7 6.8 77 18-99 14-90 (96)
142 2dgu_A Heterogeneous nuclear r 99.8 1.3E-18 4.4E-23 130.6 9.3 74 17-98 8-81 (103)
143 2yh0_A Splicing factor U2AF 65 99.8 1.8E-18 6.2E-23 139.8 10.9 82 18-99 112-193 (198)
144 2dgt_A RNA-binding protein 30; 99.8 2.4E-18 8E-23 126.5 10.3 73 18-98 8-80 (92)
145 4f02_A Polyadenylate-binding p 99.8 1.8E-18 6.1E-23 144.8 10.9 77 19-97 102-178 (213)
146 2cjk_A Nuclear polyadenylated 99.8 8.2E-19 2.8E-23 138.3 8.3 80 19-99 86-165 (167)
147 2hgl_A HNRPF protein, heteroge 99.8 1.6E-18 5.3E-23 139.7 9.9 78 18-97 42-122 (136)
148 2f3j_A RNA and export factor b 99.8 1.2E-18 4.1E-23 144.9 9.3 80 18-98 86-165 (177)
149 2jvo_A Nucleolar protein 3; nu 99.8 2E-18 7E-23 132.2 9.5 74 17-98 28-101 (108)
150 2e44_A Insulin-like growth fac 99.8 1.1E-18 3.6E-23 128.8 7.5 78 19-100 14-92 (96)
151 1l3k_A Heterogeneous nuclear r 99.8 3.2E-18 1.1E-22 138.2 10.9 79 19-98 103-181 (196)
152 1fxl_A Paraneoplastic encephal 99.8 3.1E-18 1.1E-22 134.0 10.5 79 19-97 87-167 (167)
153 2dnp_A RNA-binding protein 14; 99.8 3E-18 1E-22 125.5 9.5 75 17-99 6-80 (90)
154 1wg1_A KIAA1579 protein, homol 99.8 1.7E-18 5.9E-23 126.8 8.1 74 19-99 4-77 (88)
155 2diu_A KIAA0430 protein; struc 99.8 1.5E-18 5E-23 134.6 8.0 72 18-99 6-83 (96)
156 2jvr_A Nucleolar protein 3; RN 99.8 1.8E-18 6.1E-23 135.0 8.5 76 19-98 27-103 (111)
157 1wf1_A RNA-binding protein RAL 99.8 2.2E-18 7.6E-23 130.7 8.8 72 19-98 26-98 (110)
158 3pgw_A U1-A; protein-RNA compl 99.8 4.6E-19 1.6E-23 152.3 5.6 78 18-98 7-88 (282)
159 2cpd_A Apobec-1 stimulating pr 99.8 5.2E-18 1.8E-22 126.2 10.4 75 16-98 11-87 (99)
160 3nmr_A Cugbp ELAV-like family 99.7 4.1E-18 1.4E-22 134.6 9.9 78 19-97 94-174 (175)
161 2e5g_A U6 snRNA-specific termi 99.7 4.1E-18 1.4E-22 125.9 9.0 76 18-99 6-81 (94)
162 2cqh_A IGF-II mRNA-binding pro 99.7 2.1E-18 7.3E-23 126.7 7.0 74 18-98 6-81 (93)
163 2dha_A FLJ20171 protein; RRM d 99.7 3.6E-18 1.2E-22 135.5 8.7 79 17-97 20-102 (123)
164 3smz_A Protein raver-1, ribonu 99.7 5.2E-19 1.8E-23 152.2 3.8 160 17-190 92-254 (284)
165 3tyt_A Heterogeneous nuclear r 99.7 5E-18 1.7E-22 143.5 9.6 76 18-98 2-78 (205)
166 2cq2_A Hypothetical protein LO 99.7 3.1E-18 1.1E-22 135.4 7.8 78 15-98 20-104 (114)
167 3zzy_A Polypyrimidine tract-bi 99.7 1.1E-17 3.8E-22 135.1 10.1 75 19-98 25-104 (130)
168 1x5p_A Negative elongation fac 99.7 1.8E-17 6.2E-22 123.1 10.4 74 18-99 13-86 (97)
169 2dnn_A RNA-binding protein 12; 99.7 1.1E-17 3.8E-22 129.8 9.6 76 19-97 15-90 (109)
170 3pgw_S U1-70K; protein-RNA com 99.7 8.3E-18 2.9E-22 157.8 10.3 81 18-98 100-180 (437)
171 2dnl_A Cytoplasmic polyadenyla 99.7 9.9E-18 3.4E-22 128.6 8.2 79 18-99 6-87 (114)
172 2hgn_A Heterogeneous nuclear r 99.7 3.5E-18 1.2E-22 138.3 5.8 81 18-101 44-124 (139)
173 3smz_A Protein raver-1, ribonu 99.7 3.4E-17 1.1E-21 140.8 11.7 81 19-100 183-264 (284)
174 3d2w_A TAR DNA-binding protein 99.7 2.8E-17 9.6E-22 121.9 9.3 72 18-98 9-82 (89)
175 1sjr_A Polypyrimidine tract-bi 99.7 2.1E-17 7.2E-22 138.4 9.6 78 17-98 41-122 (164)
176 2e5i_A Heterogeneous nuclear r 99.7 3E-17 1E-21 131.0 10.1 75 18-98 21-100 (124)
177 3v4m_A Splicing factor U2AF 65 99.7 2.3E-17 7.7E-22 127.0 8.6 81 18-98 3-95 (105)
178 3beg_B Splicing factor, argini 99.7 2.2E-17 7.4E-22 127.3 8.2 72 19-97 15-91 (115)
179 2ghp_A U4/U6 snRNA-associated 99.7 3.3E-17 1.1E-21 141.4 9.9 81 17-98 207-289 (292)
180 2hgm_A HNRPF protein, heteroge 99.7 3E-17 1E-21 131.1 8.6 77 18-97 40-118 (126)
181 2g4b_A Splicing factor U2AF 65 99.7 2.1E-18 7.1E-23 136.6 1.8 148 19-189 3-163 (172)
182 2bz2_A Negative elongation fac 99.7 4.5E-17 1.5E-21 127.6 9.2 76 17-100 36-111 (121)
183 1fje_B Nucleolin RBD12, protei 99.7 3.1E-17 1.1E-21 130.8 8.4 76 19-99 98-173 (175)
184 2hzc_A Splicing factor U2AF 65 99.7 3.7E-17 1.3E-21 117.9 7.6 72 18-96 4-86 (87)
185 1wf0_A TDP-43, TAR DNA-binding 99.7 2.4E-17 8.3E-22 120.1 6.4 73 18-99 3-77 (88)
186 2ghp_A U4/U6 snRNA-associated 99.7 1E-18 3.4E-23 150.9 -1.9 162 18-190 115-281 (292)
187 3ue2_A Poly(U)-binding-splicin 99.7 6.6E-17 2.3E-21 127.5 8.3 81 18-98 18-107 (118)
188 2voo_A Lupus LA protein; RNA-b 99.7 1.6E-16 5.5E-21 133.5 10.7 79 20-100 109-187 (193)
189 2dit_A HIV TAT specific factor 99.7 1.9E-16 6.5E-21 121.3 10.1 80 16-99 11-101 (112)
190 3pgw_A U1-A; protein-RNA compl 99.7 1.9E-16 6.5E-21 136.0 10.3 78 16-98 203-281 (282)
191 2adc_A Polypyrimidine tract-bi 99.7 1.4E-16 4.8E-21 134.6 8.8 77 18-99 32-109 (229)
192 1qm9_A Polypyrimidine tract-bi 99.7 1.2E-16 4E-21 130.4 7.5 75 19-98 2-77 (198)
193 1jmt_A Splicing factor U2AF 35 99.6 5.4E-17 1.8E-21 124.5 4.3 73 25-98 20-104 (104)
194 1fje_B Nucleolin RBD12, protei 99.6 3.7E-17 1.3E-21 130.4 3.4 151 18-189 11-163 (175)
195 3tyt_A Heterogeneous nuclear r 99.6 2.9E-16 1E-20 132.6 8.4 78 18-97 121-204 (205)
196 1qm9_A Polypyrimidine tract-bi 99.6 3.8E-16 1.3E-20 127.4 8.4 77 17-98 117-195 (198)
197 3u1l_A PRE-mRNA-splicing facto 99.6 2.8E-16 9.6E-21 138.3 7.7 77 17-99 131-228 (240)
198 2yh0_A Splicing factor U2AF 65 99.6 7.9E-17 2.7E-21 130.2 2.7 74 19-99 3-87 (198)
199 3sde_A Paraspeckle component 1 99.6 8.6E-16 3E-20 132.3 9.4 82 17-99 93-178 (261)
200 2adc_A Polypyrimidine tract-bi 99.6 1.5E-15 5.2E-20 128.2 9.7 76 18-98 149-226 (229)
201 3sde_A Paraspeckle component 1 99.6 1.8E-15 6.3E-20 130.3 8.7 132 18-178 20-153 (261)
202 3s6e_A RNA-binding protein 39; 99.6 9.4E-15 3.2E-19 114.7 9.2 78 17-98 4-91 (114)
203 3tht_A Alkylated DNA repair pr 99.5 1.1E-14 3.6E-19 134.1 9.0 80 12-97 10-96 (345)
204 2d9o_A DNAJ (HSP40) homolog, s 99.5 7.6E-14 2.6E-18 107.2 9.9 72 20-98 10-88 (100)
205 3dxb_A Thioredoxin N-terminall 99.3 2.7E-12 9.2E-17 107.8 8.5 79 20-98 124-211 (222)
206 1owx_A Lupus LA protein, SS-B, 99.2 1.3E-10 4.6E-15 92.8 12.0 74 18-97 16-93 (121)
207 2dnr_A Synaptojanin-1; RRM dom 99.2 8.8E-11 3E-15 90.1 8.4 73 17-98 4-84 (91)
208 1ufw_A Synaptojanin 2; RNP dom 99.0 6.6E-10 2.3E-14 85.9 6.7 72 17-97 12-92 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.4 7.4E-07 2.5E-11 71.0 8.4 71 20-96 21-96 (117)
210 1wey_A Calcipressin 1; structu 98.1 5.4E-06 1.8E-10 64.9 7.1 73 20-98 5-82 (104)
211 1uw4_A UPF3X; nonsense mediate 97.8 0.00016 5.5E-09 55.0 9.7 79 21-99 2-87 (91)
212 3ctr_A Poly(A)-specific ribonu 97.2 0.00038 1.3E-08 54.2 5.2 52 23-83 9-60 (101)
213 1whv_A Poly(A)-specific ribonu 97.2 0.00072 2.5E-08 52.6 6.8 53 22-83 18-70 (100)
214 1wwh_A Nucleoporin 35, nucleop 97.2 0.0013 4.6E-08 52.4 8.1 69 20-96 24-93 (119)
215 2l08_A Regulator of nonsense t 97.0 0.0018 6E-08 50.0 6.8 79 20-98 9-94 (97)
216 2kn4_A Immunoglobulin G-bindin 96.3 0.01 3.5E-07 46.4 6.9 35 49-85 2-36 (158)
217 2i2y_A Fusion protein consists 96.2 0.0014 4.6E-08 51.4 1.6 39 59-98 10-49 (150)
218 2dhx_A Poly (ADP-ribose) polym 96.2 0.018 6.3E-07 44.9 7.7 69 20-97 8-81 (104)
219 3p3d_A Nucleoporin 53; structu 95.9 0.014 4.7E-07 47.3 5.9 78 18-97 5-96 (132)
220 3pq1_A Poly(A) RNA polymerase; 94.9 0.016 5.6E-07 55.2 4.0 56 20-81 53-108 (464)
221 3pgw_S U1-70K; protein-RNA com 94.7 0.0012 4E-08 61.8 -4.5 137 36-190 8-172 (437)
222 3d45_A Poly(A)-specific ribonu 88.8 0.84 2.9E-05 43.5 7.1 54 21-83 441-494 (507)
223 2lea_A Serine/arginine-rich sp 77.8 0.038 1.3E-06 43.0 -6.2 110 63-189 5-116 (135)
224 1wel_A RNA-binding protein 12; 52.8 0.83 2.8E-05 34.2 -3.1 90 124-218 32-122 (124)
225 4bby_A Alkyldihydroxyacetoneph 39.4 23 0.0008 34.3 4.1 55 27-82 350-408 (658)
226 4e8u_A Putative uncharacterize 36.1 73 0.0025 26.5 6.0 49 21-72 13-72 (172)
227 3lpe_A Putative transcription 35.1 65 0.0022 23.4 5.0 51 35-90 27-79 (92)
228 1wvf_A 4-cresol dehydrogenase 34.4 31 0.0011 32.2 3.9 43 36-79 217-261 (520)
229 2g0c_A ATP-dependent RNA helic 32.4 52 0.0018 22.4 3.9 57 32-97 13-74 (76)
230 2lcw_A RNA-binding protein FUS 33.5 13 0.00044 27.0 0.0 73 124-202 14-95 (116)
231 1igq_A Transcriptional repress 25.0 56 0.0019 23.0 2.9 22 49-71 21-42 (62)
232 3swz_A Steroid 17-alpha-hydrox 22.8 66 0.0023 28.4 3.7 63 19-91 13-79 (494)
233 3ts2_A Protein LIN-28 homolog 21.5 18 0.00063 28.8 -0.2 28 35-70 2-29 (148)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=6.3e-24 Score=160.96 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
-++++|||+|||+.+++++|+++|++||+|.+|.++.|+.|+.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 53
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=157.00 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.|+.|+.|++++|||||+|.+.++|..|++.|||..|.|++|+|.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
+
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=3.8e-23 Score=153.99 Aligned_cols=80 Identities=18% Similarity=0.324 Sum_probs=75.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCC-cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh-cCceeCCceeEEEec
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL-DEFVFLGNRLKVSYA 97 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG-~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L-nG~~f~Gr~L~VsyA 97 (230)
|++|||+|||+.++++||+++|++|| +|.+|+++.|+.|+.++|||||+|.+.++|..|++.| +|..+.|++|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 67899999999999999999999999 8999999999999999999999999999999999988 567899999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 4
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=8.3e-22 Score=141.32 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e 99 (230)
+.+|||+|||..+++++|.++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+.|++|+|+||.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999954
No 5
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=5.6e-22 Score=142.83 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=78.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46788999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred c
Q 026963 97 A 97 (230)
Q Consensus 97 A 97 (230)
|
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 8
No 6
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=1.4e-21 Score=144.94 Aligned_cols=82 Identities=23% Similarity=0.294 Sum_probs=78.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.||.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CC
Q 026963 99 QF 100 (230)
Q Consensus 99 e~ 100 (230)
+.
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=143.79 Aligned_cols=82 Identities=24% Similarity=0.262 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 8
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-21 Score=145.15 Aligned_cols=83 Identities=28% Similarity=0.293 Sum_probs=79.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45778999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
|.+
T Consensus 85 a~~ 87 (99)
T 1whw_A 85 STI 87 (99)
T ss_dssp CCC
T ss_pred cCC
Confidence 953
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.86 E-value=1.9e-23 Score=164.73 Aligned_cols=163 Identities=20% Similarity=0.217 Sum_probs=130.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+.|++|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 67899999999999999999999999999999999998899999999999999999999999999999999999999995
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963 99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP 176 (230)
Q Consensus 99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (230)
+....... ..+- .|+|..+.+.+.++ +...| .+.++.++....+...++ .+|..|....++.
T Consensus 82 ~~~~~~~~------------~~l~v~nl~~~~t~~~l~~~f~~~G---~i~~~~i~~~~~~~~~~g-~afV~f~~~~~A~ 145 (168)
T 1b7f_A 82 PGGESIKD------------TNLYVTNLPRTITDDQLDTIFGKYG---SIVQKNILRDKLTGRPRG-VAFVRYNKREEAQ 145 (168)
T ss_dssp CCSSTTTT------------CEEEEESCCTTCCHHHHHHHHTSSS---CEEEEEEEECTTTCCEEE-EEEEEESSHHHHH
T ss_pred CCcccCCC------------CCEEEeCCCCCCCHHHHHHhhhcCC---cEEEEEEEEcCCCCCcce-EEEEEECCHHHHH
Confidence 43211100 1111 57787777777666 77777 444445555555555677 6888888888888
Q ss_pred ceeeccCcccccccCchhhHH
Q 026963 177 ITRVSSDKDYFASQSMNQTVR 197 (230)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~v~ 197 (230)
.+.-.+|..+|.+.+.+.+|+
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEE
T ss_pred HHHHHhcCCEecCCCeEEEEE
Confidence 887778888887766666553
No 10
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=6.3e-22 Score=152.58 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.+++|||+|||+.+++++|+++|++||+|.+|+|+.+. +.++|||||+|.+.++|..|++.|||..|.|++|+|.+|.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 36789999999999999999999999999999999885 4589999999999999999999999999999999999995
Q ss_pred C
Q 026963 99 Q 99 (230)
Q Consensus 99 e 99 (230)
.
T Consensus 82 ~ 82 (115)
T 4f25_A 82 S 82 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 11
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=141.15 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++.+|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+.|++|+|.||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45779999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 84 ~ 84 (87)
T 3bs9_A 84 T 84 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 12
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=143.14 Aligned_cols=81 Identities=25% Similarity=0.358 Sum_probs=78.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 026963 97 A 97 (230)
Q Consensus 97 A 97 (230)
|
T Consensus 93 a 93 (94)
T 2e5h_A 93 A 93 (94)
T ss_dssp C
T ss_pred c
Confidence 8
No 13
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=7.3e-22 Score=149.89 Aligned_cols=80 Identities=14% Similarity=0.274 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCc--ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCc----eeCCcee
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGD--IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF----VFLGNRL 92 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~--I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~----~f~Gr~L 92 (230)
.-.+|||+|||+.+++++|.++|++||. |.+|++++|+.|+.++|||||+|.+.++|..|++.|||. .+.|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4578999999999999999999999995 679999999999999999999999999999999999997 4899999
Q ss_pred EEEecC
Q 026963 93 KVSYAS 98 (230)
Q Consensus 93 ~VsyA~ 98 (230)
.|+||.
T Consensus 88 ~V~~Ak 93 (95)
T 2lkz_A 88 GVDFAK 93 (95)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 999994
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.86 E-value=4.9e-23 Score=161.44 Aligned_cols=162 Identities=20% Similarity=0.194 Sum_probs=123.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+.|++|+|.|+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999995
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963 99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP 176 (230)
Q Consensus 99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (230)
+...... -.++- .|+|..+.+.+.++ +...| .+.++.++....+...++ .+|..+....+|.
T Consensus 81 ~~~~~~~------------~~~l~v~nl~~~~t~~~l~~~f~~~G---~i~~~~i~~~~~~g~~~g-~afV~f~~~~~A~ 144 (167)
T 1fxl_A 81 PSSASIR------------DANLYVSGLPKTMTQKELEQLFSQYG---RIITSRILVDQVTGVSRG-VGFIRFDKRIEAE 144 (167)
T ss_dssp CCCGGGT------------TCEEEEESCCTTCCHHHHHHHHGGGS---CEEEEEEEECTTTCCEEE-EEEEEESSHHHHH
T ss_pred CCcccCC------------CCcEEECCCCCcCCHHHHHHHHHhcC---CEeEEEEEecCCCCCccc-eEEEEeCCHHHHH
Confidence 4321110 01122 56777776666555 66677 333344434443444566 5777777777777
Q ss_pred ceeeccCcccccccCchhhH
Q 026963 177 ITRVSSDKDYFASQSMNQTV 196 (230)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~v 196 (230)
.+.-.+|..+|.+...+.+|
T Consensus 145 ~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 145 EAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp HHHHHHTTCCCTTCSSCCEE
T ss_pred HHHHHhcCCccCCCccceEE
Confidence 77777777777776655544
No 15
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.7e-21 Score=142.92 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=78.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 93
No 16
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=143.75 Aligned_cols=82 Identities=22% Similarity=0.241 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEE-EeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEEC-KPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v-~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
.++++|||+|||+.+++++|.++|++||+|.+| .++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 468899999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
|.+
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 943
No 17
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.5e-21 Score=144.91 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
+++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 93 ~~ 94 (103)
T 2cq0_A 93 KP 94 (103)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 18
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=8.7e-22 Score=148.38 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC-ce
Q 026963 19 ESRYLIVRNVPS------LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG-NR 91 (230)
Q Consensus 19 eS~~LyV~NLP~------~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G-r~ 91 (230)
.+++|||+|||. .+++++|.++|++||+|.+|.++.++.|++++|||||+|.+.++|..|++.|||..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467999999999 88999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eEEEec
Q 026963 92 LKVSYA 97 (230)
Q Consensus 92 L~VsyA 97 (230)
|+|.+|
T Consensus 85 l~V~~a 90 (100)
T 3ns6_A 85 LFLYTM 90 (100)
T ss_dssp CEEEES
T ss_pred EEEEEC
Confidence 999999
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=4.5e-21 Score=142.80 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=78.6
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963 16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (230)
Q Consensus 16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs 95 (230)
...++++|||+|||..+++++|+++|++||+|.+|.++.++ ++.++|||||+|.+.++|..|++.|||..|.|++|+|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred ecCC
Q 026963 96 YASQ 99 (230)
Q Consensus 96 yA~e 99 (230)
||.+
T Consensus 92 ~a~~ 95 (100)
T 2do4_A 92 ISNS 95 (100)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9954
No 20
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2e-21 Score=144.82 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=79.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
|.+
T Consensus 89 a~~ 91 (102)
T 2cqb_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 943
No 21
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.9e-21 Score=142.38 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++ |||..|.|++|+|.||
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 87 ~ 87 (99)
T 2dgs_A 87 E 87 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 22
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=144.51 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.|+.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
..
T Consensus 91 ~~ 92 (103)
T 2dnm_A 91 RY 92 (103)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 23
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.2e-21 Score=144.69 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=78.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+..|||..|.|++|+|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 100 a~ 101 (106)
T 1p27_B 100 CF 101 (106)
T ss_dssp SE
T ss_pred ec
Confidence 94
No 24
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=4.2e-21 Score=143.03 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=78.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceE--------EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--------CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~--------v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~ 88 (230)
..+..+|||+|||..+++++|+++|++||.|.+ |.++.++.++.++|||||+|.+.++|..|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456789999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CceeEEEec
Q 026963 89 GNRLKVSYA 97 (230)
Q Consensus 89 Gr~L~VsyA 97 (230)
|+.|+|.||
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999999998
No 25
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.1e-21 Score=143.86 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=78.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 92 a~ 93 (105)
T 1x5u_A 92 AS 93 (105)
T ss_dssp TT
T ss_pred CC
Confidence 94
No 26
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-21 Score=144.48 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=79.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 89 a~ 90 (102)
T 1x5s_A 89 AG 90 (102)
T ss_dssp EE
T ss_pred CC
Confidence 94
No 27
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.3e-21 Score=142.96 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=79.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcce-EEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce----
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIE-ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR---- 91 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~-~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~---- 91 (230)
..++++|||+|||+.+++++|+++|++||+|. +|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45789999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eEEEecCC
Q 026963 92 LKVSYASQ 99 (230)
Q Consensus 92 L~VsyA~e 99 (230)
|+|+||.+
T Consensus 86 l~v~~a~~ 93 (99)
T 2div_A 86 FKLNYATY 93 (99)
T ss_dssp CCEEETTC
T ss_pred EEEeecCC
Confidence 99999943
No 28
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=9.3e-22 Score=144.83 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=73.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCC--cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYG--DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG--~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.+|||+|||+.+++++|+++|++|| +|.+|.++.++.+|+++|||||+|.+.++|..|++.|||..|.|+.|+|.+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3699999999999999999999999 99999999999999999999999999999999999999999999999999994
No 29
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=7.7e-21 Score=144.78 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 93 ~ 93 (115)
T 2dgo_A 93 T 93 (115)
T ss_dssp S
T ss_pred c
Confidence 4
No 30
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=6.2e-21 Score=143.86 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=79.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc------CceeCCc
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD------EFVFLGN 90 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln------G~~f~Gr 90 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|| |..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3568899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eeEEEecCC
Q 026963 91 RLKVSYASQ 99 (230)
Q Consensus 91 ~L~VsyA~e 99 (230)
+|+|.||.+
T Consensus 92 ~l~v~~a~~ 100 (111)
T 1x4h_A 92 QLKVDLAVT 100 (111)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 999999943
No 31
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.1e-21 Score=142.25 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCC---CCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAED---CDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~---tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V 94 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++. |+.++|||||+|.+.++|..|++.|||..|.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999876 6799999999999999999999999999999999999
Q ss_pred EecC
Q 026963 95 SYAS 98 (230)
Q Consensus 95 syA~ 98 (230)
.||.
T Consensus 83 ~~a~ 86 (98)
T 2cpf_A 83 RISE 86 (98)
T ss_dssp ECSS
T ss_pred EEcc
Confidence 9994
No 32
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=5.4e-21 Score=145.94 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 103 ~ 103 (115)
T 2cpz_A 103 R 103 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 33
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-21 Score=144.20 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=77.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.||.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999994
Q ss_pred C
Q 026963 99 Q 99 (230)
Q Consensus 99 e 99 (230)
.
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=7.9e-21 Score=142.44 Aligned_cols=82 Identities=21% Similarity=0.374 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecC-CCCCCceeEEEEEEccHhHHHHHHHHh-cCceeCCceeEEE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDA-EDCDPFTDVYFIKFRLFSNARFAKRKL-DEFVFLGNRLKVS 95 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d-~~tgksrG~AFV~F~d~edA~~A~~~L-nG~~f~Gr~L~Vs 95 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.+ +.++.++|||||+|.+.++|..|++.| ||..|.|++|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 46789999999999999999999999999999999999 789999999999999999999999999 9999999999999
Q ss_pred ecCC
Q 026963 96 YASQ 99 (230)
Q Consensus 96 yA~e 99 (230)
||.+
T Consensus 93 ~a~~ 96 (107)
T 2cph_A 93 WADS 96 (107)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9943
No 35
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=5.8e-21 Score=144.42 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+..|||..|.|++|+|+||
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 104 ~ 104 (110)
T 1oo0_B 104 F 104 (110)
T ss_dssp E
T ss_pred c
Confidence 4
No 36
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=4.7e-21 Score=138.46 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCC-ceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDP-FTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgk-srG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
.++++|||+|||..+++++|+++|++||+|.+|.++.+..++. ++|||||+|.+.++|..|++.|||..|.|+.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3578999999999999999999999999999999999987766 999999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 82 a~ 83 (88)
T 4a8x_A 82 VL 83 (88)
T ss_dssp EC
T ss_pred CC
Confidence 94
No 37
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.84 E-value=9.4e-21 Score=142.34 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++ ++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457899999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 38
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=1.4e-20 Score=140.91 Aligned_cols=80 Identities=25% Similarity=0.386 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC---ceeEE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG---NRLKV 94 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G---r~L~V 94 (230)
.++++|||+|||..+++++|.++|++||+|.+|.++.++ ++.++|||||+|.+.++|..|++.|||..+.| ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 467899999999999999999999999999999999997 79999999999999999999999999999998 99999
Q ss_pred EecC
Q 026963 95 SYAS 98 (230)
Q Consensus 95 syA~ 98 (230)
.||.
T Consensus 92 ~~a~ 95 (105)
T 2dnh_A 92 KFAD 95 (105)
T ss_dssp EESC
T ss_pred EECc
Confidence 9994
No 39
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=141.08 Aligned_cols=79 Identities=22% Similarity=0.180 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.+ ++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 46889999999999999999999999999999999988 7999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 91 ~ 91 (103)
T 2d9p_A 91 Q 91 (103)
T ss_dssp S
T ss_pred c
Confidence 4
No 40
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=8.9e-21 Score=139.39 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++. +.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4568999999999999999999999999999999999876 999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=7.9e-21 Score=142.53 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee---CCceeEE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF---LGNRLKV 94 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f---~Gr~L~V 94 (230)
.++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred EecC
Q 026963 95 SYAS 98 (230)
Q Consensus 95 syA~ 98 (230)
.||.
T Consensus 91 ~~a~ 94 (106)
T 2dgp_A 91 KPAD 94 (106)
T ss_dssp EECC
T ss_pred EECC
Confidence 9994
No 42
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=7e-21 Score=145.61 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
No 43
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=9.4e-21 Score=137.43 Aligned_cols=79 Identities=22% Similarity=0.253 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+ .|||..|.|++|+|.+|.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999999999999999999999999999 999999999999999994
No 44
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=1.8e-20 Score=136.06 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++. +|..|.|++|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEeC
Confidence 4678999999999999999999999999999999999999999999999999999999999955 889999999999987
No 45
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=152.99 Aligned_cols=79 Identities=14% Similarity=0.085 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCC--cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYG--DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG--~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
+.++|||+|||+.+++++|.++|++|| +|.+|.++.|+.||.++|||||+|.+.++|..|+..|||..|.|++|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 026963 97 A 97 (230)
Q Consensus 97 A 97 (230)
|
T Consensus 134 a 134 (156)
T 3n9u_C 134 A 134 (156)
T ss_dssp C
T ss_pred c
Confidence 9
No 46
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=144.34 Aligned_cols=83 Identities=23% Similarity=0.234 Sum_probs=78.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
|.+
T Consensus 103 a~~ 105 (108)
T 2jrs_A 103 VTE 105 (108)
T ss_dssp SCS
T ss_pred ccc
Confidence 943
No 47
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=142.77 Aligned_cols=81 Identities=20% Similarity=0.183 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcce--------EEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIE--------ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~--------~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G 89 (230)
.++++|||+|||+.+++++|+++|++||.|. .|.++.++.++.++|||||+|.+.++|..|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4678999999999999999999999999999 69999999999999999999999999999999999999999
Q ss_pred ceeEEEecC
Q 026963 90 NRLKVSYAS 98 (230)
Q Consensus 90 r~L~VsyA~ 98 (230)
++|+|.||.
T Consensus 93 ~~l~V~~a~ 101 (113)
T 2cpe_A 93 SKLKVSLAR 101 (113)
T ss_dssp EECEEECSS
T ss_pred CEEEEEECC
Confidence 999999994
No 48
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=6e-21 Score=135.02 Aligned_cols=75 Identities=11% Similarity=0.135 Sum_probs=72.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
+|||+|||+.+++++|.++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++ |||..|.|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999998 9999999999999987
No 49
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.2e-21 Score=146.50 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=77.0
Q ss_pred eeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 14 ytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
|....++++|||+|||+.+++++|.++|++||+|.+|.++.++. +.++|||||+|.+.++|..|+. +||..|.|++|.
T Consensus 5 ~~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~ 82 (103)
T 1s79_A 5 LKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLL 82 (103)
T ss_dssp CSSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCE
T ss_pred ccccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEE
Confidence 33345678999999999999999999999999999999999987 9999999999999999999999 999999999999
Q ss_pred EEec
Q 026963 94 VSYA 97 (230)
Q Consensus 94 VsyA 97 (230)
|.++
T Consensus 83 V~~~ 86 (103)
T 1s79_A 83 ILFK 86 (103)
T ss_dssp EEEH
T ss_pred EEEc
Confidence 9999
No 50
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-21 Score=140.08 Aligned_cols=81 Identities=23% Similarity=0.197 Sum_probs=77.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred c
Q 026963 97 A 97 (230)
Q Consensus 97 A 97 (230)
+
T Consensus 82 ~ 82 (85)
T 1x4e_A 82 P 82 (85)
T ss_dssp C
T ss_pred C
Confidence 7
No 51
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=144.62 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=77.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
.+++++|||+|||..+++++|.++|++||+|.+|.++.+. ++.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4577899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 83 a~ 84 (116)
T 2fy1_A 83 AK 84 (116)
T ss_dssp CC
T ss_pred CC
Confidence 93
No 52
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.5e-21 Score=140.25 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
..+.+|||+|||+.+++++|+++|++||+|..+.++.+..++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34578999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 93 ~ 93 (98)
T 2cqp_A 93 S 93 (98)
T ss_dssp S
T ss_pred C
Confidence 4
No 53
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=2.7e-20 Score=139.57 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++.+|||+|||+.+++++|+++|++|| |.+|.++.++.|+.++|||||+|.+.++|..|+ .|||..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4678999999999999999999999997 999999999999999999999999999999999 99999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 91 ~~ 92 (103)
T 2dng_A 91 EG 92 (103)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 54
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=1.4e-20 Score=145.41 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=78.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|+|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34577999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 99 a~ 100 (126)
T 3ex7_B 99 CF 100 (126)
T ss_dssp SE
T ss_pred ec
Confidence 94
No 55
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=142.55 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=76.1
Q ss_pred cCCCCeEEEcCCCCCC------CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc
Q 026963 17 CDESRYLIVRNVPSLG------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN 90 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~------teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr 90 (230)
...+++|||+|||+.+ ++++|.++|++||+|.+|.++ +.+|.++|||||+|.+.++|..|++.|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3457899999999988 679999999999999999998 46799999999999999999999999999999999
Q ss_pred -eeEEEecCCCC
Q 026963 91 -RLKVSYASQFE 101 (230)
Q Consensus 91 -~L~VsyA~e~E 101 (230)
+|+|++|.+.+
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999996554
No 56
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=2.4e-20 Score=136.31 Aligned_cols=81 Identities=17% Similarity=0.105 Sum_probs=76.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|..|.++.+ ++.++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356789999999999999999999999999999999874 789999999999999999999999999999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
|.+
T Consensus 83 a~~ 85 (92)
T 2dgv_A 83 DRN 85 (92)
T ss_dssp CSC
T ss_pred cCC
Confidence 953
No 57
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=140.44 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=77.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhcc-CCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce-eCCceeEE
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFAT-YGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV-FLGNRLKV 94 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~-fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~-f~Gr~L~V 94 (230)
..++.+|||+|||+.+++++|+++|++ ||+|.+|.++.++ ++.++|||||+|.+.++|..|++.|||.. |.|++|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 356789999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred EecC
Q 026963 95 SYAS 98 (230)
Q Consensus 95 syA~ 98 (230)
.||.
T Consensus 85 ~~a~ 88 (104)
T 2dhg_A 85 SVAI 88 (104)
T ss_dssp CBCC
T ss_pred EEcc
Confidence 9994
No 58
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=145.64 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999987
No 59
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=9e-21 Score=139.35 Aligned_cols=79 Identities=19% Similarity=0.160 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
++.+|||+|||+.++++||+++|++||+|.++.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999999998
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=146.46 Aligned_cols=81 Identities=33% Similarity=0.399 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||..+++++|+++|+.||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|+||
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 120 ~ 120 (139)
T 1u6f_A 120 A 120 (139)
T ss_dssp S
T ss_pred C
Confidence 3
No 61
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=139.53 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCC-CCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDC-DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~t-gksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
.++.+|||+|||+.+++++|+++|++|| |.+|.++.++.+ +.++|||||+|.+.++|..|+ .|||..|.|++|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999999988 999999999999999999999 9999999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
|.+
T Consensus 91 a~~ 93 (104)
T 1wi8_A 91 ADQ 93 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 953
No 62
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=139.68 Aligned_cols=81 Identities=11% Similarity=0.070 Sum_probs=77.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||..+++++|+++|++||+|.+|.++.++ ++.++|||||+|.+.++|..|++.|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3567899999999999999999999999999999999987 599999999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 91 a~ 92 (114)
T 2do0_A 91 DE 92 (114)
T ss_dssp CS
T ss_pred cc
Confidence 94
No 63
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=143.01 Aligned_cols=78 Identities=14% Similarity=0.249 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+ .|||..|.|+.|+|.||
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4679999999999999999999999999999999999999999999999999999999999 99999999999999999
No 64
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=2.4e-20 Score=144.56 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=72.2
Q ss_pred eccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce--eCCcee
Q 026963 15 TVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV--FLGNRL 92 (230)
Q Consensus 15 tv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~--f~Gr~L 92 (230)
..+.++++|||+|||+.++++||.++|++||+|.+|.++++ ||||||+|++.++|..|++.|||.. +.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34568999999999999999999999999999999999854 6999999999999999999999987 679999
Q ss_pred EEEecCC
Q 026963 93 KVSYASQ 99 (230)
Q Consensus 93 ~VsyA~e 99 (230)
.|+||..
T Consensus 90 ~V~~S~~ 96 (100)
T 3r27_A 90 FVNYSTS 96 (100)
T ss_dssp EEEECSC
T ss_pred EEEeccc
Confidence 9999943
No 65
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-20 Score=139.32 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 18 DESRYLIVRNVPSLGCGDDLL----KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~----~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
.++.+|||+|||+.+++++|+ ++|++||+|.+|.++.++.+ +|||||+|.+.++|..|++.|||..|.|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356789999999999999999 99999999999999998765 89999999999999999999999999999999
Q ss_pred EEecCC
Q 026963 94 VSYASQ 99 (230)
Q Consensus 94 VsyA~e 99 (230)
|+||.+
T Consensus 84 V~~a~~ 89 (96)
T 2dgx_A 84 VSLATG 89 (96)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999954
No 66
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.82 E-value=1.1e-21 Score=160.70 Aligned_cols=166 Identities=12% Similarity=0.081 Sum_probs=120.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++++|||+|||..+++++|+++|++||+|.+|.++.+..++.++|||||+|.+.++|..|++.|||..|.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999985
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963 99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP 176 (230)
Q Consensus 99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (230)
............... ..-...+- .|++..+.+.+.++ +..+| .+.++.++.+.-+...++ .+|..|....++.
T Consensus 107 ~~~~~~~~~~~~~~~-~~~~~~l~v~nlp~~~t~~~l~~~f~~~G---~v~~v~i~~~~~~g~~~g-~afV~F~~~~~A~ 181 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEE-ARAFNRIYVASVHQDLSDDDIKSVFEAFG---KIKSATLARDPTTGKHKG-YGFIEYEKAQSSQ 181 (216)
T ss_dssp CCGGGHHHHHHHHHH-HTTSCEEEEECCCTTCCHHHHHHHHTTSS---CEEEEEEEECTTTCCEEE-EEEEEESSHHHHH
T ss_pred Cccccchhhhhhhcc-cCCCcEEEEeCCCCcCCHHHHHHHHhccC---CeeEEEEEecCCCCCcCc-eEEEEecCHHHHH
Confidence 433222111111100 00001111 57888887777766 88888 454555555555555666 5777777777776
Q ss_pred ceeeccCcccccc
Q 026963 177 ITRVSSDKDYFAS 189 (230)
Q Consensus 177 ~~~~~~~~~~~~~ 189 (230)
.+.-.+|..+|.+
T Consensus 182 ~A~~~l~g~~~~g 194 (216)
T 2qfj_A 182 DAVSSMNLFDLGG 194 (216)
T ss_dssp HHHHHHTTCBCSS
T ss_pred HHHHHccCCEeCC
Confidence 6666666666654
No 67
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=1.9e-20 Score=148.10 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=80.1
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963 16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (230)
Q Consensus 16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs 95 (230)
-.+++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 026963 96 YASQ 99 (230)
Q Consensus 96 yA~e 99 (230)
||.+
T Consensus 122 ~a~~ 125 (129)
T 2kxn_B 122 FSIT 125 (129)
T ss_dssp CCSS
T ss_pred EecC
Confidence 9943
No 68
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=5.5e-20 Score=147.42 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||..+++++|.++|++||+|.+|.|+.++.|+.++|||||+|.+.++|..|+..|||..|.|++|+|+||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 69
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.82 E-value=1.8e-21 Score=162.98 Aligned_cols=163 Identities=11% Similarity=0.044 Sum_probs=126.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|+|+.|+.|++++|||||.|.+.++|..|++.|||..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCC
Q 026963 98 SQFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNES 175 (230)
Q Consensus 98 ~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (230)
......... -..+|- .|++..+++.+.++ +..+| .+.++.++..+ ...++ .+|..|....++
T Consensus 93 ~~~~~~~~~----------~~~~l~v~nl~~~~t~~~l~~~F~~~G---~i~~~~i~~d~--~~~~g-~~fV~f~~~~~a 156 (213)
T 4f02_A 93 QRDPSLRKS----------GVGNIFIKNLDKSIDNKALYDTFSAFG---NILSCKVVCDE--NGSKG-YGFVHFETQEAA 156 (213)
T ss_dssp CCCTHHHHH----------CTTEEEEESCCTTCCHHHHHHHHGGGS---CEEEEEEEEET--TEEEE-EEEEEESSHHHH
T ss_pred ccccccccc----------ccccceECCcccccHHHHHHHHHhhcC---CeEEEEeeccC--CCCce-EEEEEeCCHHHH
Confidence 432211100 011222 57888888888777 88888 44444544432 23466 678888888888
Q ss_pred CceeeccCcccccccCchhhHHH
Q 026963 176 PITRVSSDKDYFASQSMNQTVRL 198 (230)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~v~~ 198 (230)
..+.-.+|..+|.+. ...|++
T Consensus 157 ~~Ai~~lng~~~~g~--~i~V~~ 177 (213)
T 4f02_A 157 ERAIEKMNGMLLNDR--KVFVGR 177 (213)
T ss_dssp HHHHHHHTTCEETTE--ECEEEE
T ss_pred HHHHHHhCCCEECCE--EEEEEE
Confidence 888777887777664 444433
No 70
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=140.32 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=77.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..+.++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+.. ||..|.|+.|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 92 a~ 93 (105)
T 2dh8_A 92 CT 93 (105)
T ss_dssp SC
T ss_pred cc
Confidence 94
No 71
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.4e-20 Score=140.50 Aligned_cols=82 Identities=18% Similarity=0.314 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCc-ceEEEee-cCCCCCCceeEEEEEEccHhHHHHHHHHhc--CceeCCceeE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGD-IEECKPM-DAEDCDPFTDVYFIKFRLFSNARFAKRKLD--EFVFLGNRLK 93 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~-I~~v~il-~d~~tgksrG~AFV~F~d~edA~~A~~~Ln--G~~f~Gr~L~ 93 (230)
.++++|||+|||+.+++++|.++|++||+ |.+|.++ .+..++.++|||||+|.+.++|..|++.|| +..|.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999999 9999998 888889999999999999999999999996 5999999999
Q ss_pred EEecCC
Q 026963 94 VSYASQ 99 (230)
Q Consensus 94 VsyA~e 99 (230)
|.||.+
T Consensus 86 V~~a~~ 91 (109)
T 2dis_A 86 VDWAEP 91 (109)
T ss_dssp EEESCS
T ss_pred EEEcCC
Confidence 999943
No 72
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.6e-20 Score=137.51 Aligned_cols=80 Identities=24% Similarity=0.325 Sum_probs=74.9
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.+.. .++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34678999999999999999999999999999999999864 3689999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 90 a~ 91 (103)
T 2cqi_A 90 AT 91 (103)
T ss_dssp CC
T ss_pred CC
Confidence 94
No 73
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.7e-20 Score=136.46 Aligned_cols=80 Identities=25% Similarity=0.320 Sum_probs=75.1
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.+.. .++|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999998864 4899999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 90 a~ 91 (103)
T 2cq3_A 90 AT 91 (103)
T ss_dssp CC
T ss_pred cc
Confidence 94
No 74
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-20 Score=133.16 Aligned_cols=76 Identities=12% Similarity=0.154 Sum_probs=73.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||.|.+.++|..|++.+| ..+.|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999999 9999999999998
No 75
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=141.38 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.+.++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.||+ .|.|++|+|+||
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 3578999999999999999999999999999999999999999999999999999999999999999 899999999999
No 76
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=3e-20 Score=141.48 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=74.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.+ +.++|||||+|.+.++|..|+..|||..|.|+.|+|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356789999999999999999999999999999999976 55699999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 82 a~ 83 (115)
T 3lqv_A 82 YN 83 (115)
T ss_dssp CC
T ss_pred ec
Confidence 94
No 77
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=136.28 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=69.0
Q ss_pred CCeEEEcCCCCCC------CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc-ee
Q 026963 20 SRYLIVRNVPSLG------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-RL 92 (230)
Q Consensus 20 S~~LyV~NLP~~~------teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr-~L 92 (230)
+++|||+|||..+ ++++|.++|++||+|.+|.++ +.++.++|||||+|.+.++|..|++.|||..|.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 5789999999988 679999999999999999988 46799999999999999999999999999999999 99
Q ss_pred EEE
Q 026963 93 KVS 95 (230)
Q Consensus 93 ~Vs 95 (230)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 874
No 78
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=148.27 Aligned_cols=80 Identities=18% Similarity=0.298 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceE--EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCc----eeCCce
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF----VFLGNR 91 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~--v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~----~f~Gr~ 91 (230)
.++++|||+|||+.+++++|+++|++||+|.. |+|+.|+.|+.++|||||+|.+. +|..|+..|||. .+.|++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred eEEEecC
Q 026963 92 LKVSYAS 98 (230)
Q Consensus 92 L~VsyA~ 98 (230)
|+|+||.
T Consensus 100 l~V~~a~ 106 (131)
T 2m2b_A 100 INVEFAK 106 (131)
T ss_dssp CCCEECC
T ss_pred EEEEECC
Confidence 9999994
No 79
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=5.1e-20 Score=142.49 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=77.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||..+++++|+++|++||+|.+|.++.++ ++.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 111 a~ 112 (124)
T 2kt5_A 111 VA 112 (124)
T ss_dssp EC
T ss_pred eC
Confidence 94
No 80
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=4.7e-20 Score=147.26 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
....+|||+|||+.+++++|+++|++||+|.+|.++.|+.++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 148 ~~ 149 (158)
T 2kn4_A 148 RY 149 (158)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 81
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.82 E-value=8.2e-21 Score=138.62 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=74.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++|||+|||..+++++|.++|++||+|.+|.++.++.++.++|||||+|.+.+ |..|+..|||..+.|++|+|++|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 47999999999999999999999999999999999999999999999999999 999999999999999999999994
No 82
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.82 E-value=1.1e-21 Score=158.50 Aligned_cols=161 Identities=10% Similarity=0.107 Sum_probs=117.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++. +|..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4578999999999999999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCC
Q 026963 98 SQFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNES 175 (230)
Q Consensus 98 ~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (230)
...+....... ..-...+- .|+|..+.+.+.++ +..+| .+.++.++..+-+...++ .+|..|....++
T Consensus 90 ~~~~~~~~~~~------~~~~~~l~V~nLp~~~t~~~l~~~F~~~G---~i~~v~i~~~~~~g~~~g-~afV~F~~~~~A 159 (196)
T 1l3k_A 90 VSREDSQRPGA------HLTVKKIFVGGIKEDTEEHHLRDYFEQYG---KIEVIEIMTDRGSGKKRG-FAFVTFDDHDSV 159 (196)
T ss_dssp CC-----------------CCSEEEEECCTTTCCHHHHHHHHTTTS---CEEEEEEEECTTTCCEEE-EEEEEESSHHHH
T ss_pred cCccccccccc------CCCcceEEEeCCCCCCCHHHHHHHHhcCC---CeEEEEEeecCCCCCccc-eEEEEECCHHHH
Confidence 43221110000 00001111 56788887777766 77888 444445544444455666 577777777777
Q ss_pred CceeeccCccccccc
Q 026963 176 PITRVSSDKDYFASQ 190 (230)
Q Consensus 176 ~~~~~~~~~~~~~~~ 190 (230)
..+.-. +...|.+.
T Consensus 160 ~~A~~~-~~~~~~G~ 173 (196)
T 1l3k_A 160 DKIVIQ-KYHTVNGH 173 (196)
T ss_dssp HHHHHC-SCCEETTE
T ss_pred HHHHHh-CCcEECCE
Confidence 655433 45556553
No 83
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-20 Score=148.47 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 18 DESRYLIVRNVPSLGCGDDLL----KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~----~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
.++.+|||+|||+.+++++|+ ++|++||+|.+|.+.. ++.++|||||+|.+.++|..|++.|||..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999998765 7999999999998864 478999999999999999999999999999999999
Q ss_pred EEecC
Q 026963 94 VSYAS 98 (230)
Q Consensus 94 VsyA~ 98 (230)
|+||.
T Consensus 104 V~~a~ 108 (127)
T 2a3j_A 104 ITFSE 108 (127)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 99993
No 84
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-20 Score=144.00 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCc--eeCCceeEE
Q 026963 18 DESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF--VFLGNRLKV 94 (230)
Q Consensus 18 ~eS~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~--~f~Gr~L~V 94 (230)
+++++|||+|||+ .++++||.++|++||+|.+|.++.+ +|||||+|++.++|..|++.|||. .|.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4789999999999 9999999999999999999999876 489999999999999999999975 499999999
Q ss_pred EecCC
Q 026963 95 SYASQ 99 (230)
Q Consensus 95 syA~e 99 (230)
+||..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99953
No 85
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=138.26 Aligned_cols=80 Identities=10% Similarity=0.179 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee--------CC
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF--------LG 89 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f--------~G 89 (230)
.++++|||+|||..+++++|+++|++||+|.+|.++.++ ++.++|||||.|.+.++|..|++.|||..| .|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 467899999999999999999999999999999999998 899999999999999999999999999999 68
Q ss_pred ceeEEEecC
Q 026963 90 NRLKVSYAS 98 (230)
Q Consensus 90 r~L~VsyA~ 98 (230)
++|.|.||.
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 889999994
No 86
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.1e-20 Score=141.35 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCCHHHHH---HhhccCCcceEEEeecCCCCC---CceeEEEEEEccHhHHHHHHHHhcCceeCCcee
Q 026963 19 ESRYLIVRNVPSLGCGDDLL---KLFATYGDIEECKPMDAEDCD---PFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL 92 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~---~LFS~fG~I~~v~il~d~~tg---ksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L 92 (230)
+..+|||+|||+.+++++|. ++|++||+|.+|.++.+..++ .++|||||+|.+.++|..|++.|||..|.|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 46799999999999999999 999999999999999987654 566999999999999999999999999999999
Q ss_pred EEEecC
Q 026963 93 KVSYAS 98 (230)
Q Consensus 93 ~VsyA~ 98 (230)
+|+||.
T Consensus 94 ~V~~a~ 99 (111)
T 2cpi_A 94 KASLGT 99 (111)
T ss_dssp EEESCC
T ss_pred EEEecc
Confidence 999994
No 87
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=3.5e-20 Score=139.07 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=74.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCC-CCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAE-DCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~-~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs 95 (230)
....++|||+|||..+++++|+++|++|| |.+|.++.++ .+++++|||||+|.+.++|..|+ .|||..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 35678999999999999999999999999 9999999998 68999999999999999999999 999999999999999
Q ss_pred ecCC
Q 026963 96 YASQ 99 (230)
Q Consensus 96 yA~e 99 (230)
||.+
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 9943
No 88
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.8e-20 Score=143.17 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=75.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..+..+|||+|||+.+++++|.++|++||.|.++.++.+..++.++|||||+|.+.++|..|+. |||..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3467899999999999999999999999999997666777789999999999999999999999 999999999999999
Q ss_pred c
Q 026963 97 A 97 (230)
Q Consensus 97 A 97 (230)
|
T Consensus 101 a 101 (124)
T 1wel_A 101 I 101 (124)
T ss_dssp E
T ss_pred C
Confidence 9
No 89
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=4.8e-20 Score=142.07 Aligned_cols=79 Identities=24% Similarity=0.246 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++++|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+ .|||..|.|+.|+|+||.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3679999999999999999999999999999999999999999999999999999999999 899999999999999994
No 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=137.36 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=74.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.+..+ +.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999765 56899999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 96 a~ 97 (109)
T 1x4a_A 96 PR 97 (109)
T ss_dssp CC
T ss_pred cc
Confidence 94
No 91
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=135.11 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++ ++..|.|++|+|.||
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 457899999999999999999999999999999999999999999999999999999999999 478999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 91 ~~ 92 (103)
T 2cqg_A 91 NS 92 (103)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.3e-20 Score=144.17 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=71.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc--CceeCCceeEE
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD--EFVFLGNRLKV 94 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln--G~~f~Gr~L~V 94 (230)
..++.+|||+|||+.++++||.++|++||+|.+|.++.+ +|||||+|++.++|..|++.|+ |..|.|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 457889999999999999999999999999999999975 6999999999999999999886 47899999999
Q ss_pred EecCC
Q 026963 95 SYASQ 99 (230)
Q Consensus 95 syA~e 99 (230)
+||.+
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 99954
No 93
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=138.68 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=70.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh--cCceeCCceeEE
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL--DEFVFLGNRLKV 94 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L--nG~~f~Gr~L~V 94 (230)
..++++|||+|||+.+++++|.++|++||+|.+|.++.+ +|||||+|++.++|..|++.| ++..+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 357889999999999999999999999999999999875 699999999999999999987 477899999999
Q ss_pred EecCC
Q 026963 95 SYASQ 99 (230)
Q Consensus 95 syA~e 99 (230)
+||..
T Consensus 86 ~~a~~ 90 (101)
T 2cq1_A 86 QYSNH 90 (101)
T ss_dssp EECSC
T ss_pred EEcCc
Confidence 99953
No 94
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=1.3e-19 Score=147.25 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++++|||+|||+.+++++|+.+|++||+|..|.++.++.|+.++|||||+|.+.++|..|+..|||..|.|++|.|.||.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999994
No 95
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=1.2e-19 Score=138.83 Aligned_cols=85 Identities=11% Similarity=0.123 Sum_probs=74.9
Q ss_pred eeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 14 ytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
+.-..++++|||+|||..+++++|+++|++||+|.+|.++.++.|+.++|||||+|.+.++|..|+..+ |..|.|+.|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 334457789999999999999999999999999999999999999999999999999999999999987 5999999999
Q ss_pred EEecCC
Q 026963 94 VSYASQ 99 (230)
Q Consensus 94 VsyA~e 99 (230)
|.+|..
T Consensus 98 V~~a~~ 103 (109)
T 2rs2_A 98 PKVAFP 103 (109)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999943
No 96
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=5.2e-20 Score=135.76 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 18 DESRYLIVRNVPSLGCGDDLL----KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~----~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
.++++|||+|||+.+++++|+ ++|++||+|.+|.++. ++.++|||||+|.+.++|..|++.|||..|.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 578899999999999999999 9999999999999874 478899999999999999999999999999999999
Q ss_pred EEecCC
Q 026963 94 VSYASQ 99 (230)
Q Consensus 94 VsyA~e 99 (230)
|+||.+
T Consensus 83 v~~a~~ 88 (97)
T 1nu4_A 83 IQYAKT 88 (97)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 999943
No 97
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=138.33 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
+.++|||+|||+.+++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|..|++. ||..|.|+.|+|.||.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999999999999999999999999999999999 9999999999999994
Q ss_pred C
Q 026963 99 Q 99 (230)
Q Consensus 99 e 99 (230)
.
T Consensus 105 ~ 105 (116)
T 1x4b_A 105 A 105 (116)
T ss_dssp S
T ss_pred C
Confidence 3
No 98
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.9e-20 Score=148.10 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=77.3
Q ss_pred eeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEE--eecC---CCCCCceeEEEEEEccHhHHHHHHHHhcCcee
Q 026963 13 VYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECK--PMDA---EDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF 87 (230)
Q Consensus 13 vytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~--il~d---~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f 87 (230)
-|....++.+|||+|||+.+++++|.++|++||.|..|. ++.+ ..++.++|||||.|.+.++|..|+..|||..|
T Consensus 38 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 38 SYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp TCCCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred ccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 355567889999999999999999999999999998751 1111 24689999999999999999999999999999
Q ss_pred CCceeEEEecCCCCChH
Q 026963 88 LGNRLKVSYASQFESLA 104 (230)
Q Consensus 88 ~Gr~L~VsyA~e~Es~~ 104 (230)
.|++|+|+||.......
T Consensus 118 ~g~~l~V~~a~~~~~~~ 134 (143)
T 3egn_A 118 FGKPMVVQFARSARPKQ 134 (143)
T ss_dssp TTEECEEEECCCSCC--
T ss_pred CCcEEEEEECCCCCCcc
Confidence 99999999996544443
No 99
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=130.87 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++.+|||+|||+.+++++|+++|++| .|.+|.++.+ .++.++|||||+|.+.++|..|++ |||..|.|+.|+|.+|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 467899999999999999999999999 9999999999 789999999999999999999999 9999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 85 ~~ 86 (91)
T 2dgw_A 85 KS 86 (91)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 100
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.6e-19 Score=140.01 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++.+|||+|||..+++++|.++|++||+|.++.++.+..++.++|+|||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 101
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-20 Score=141.05 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=74.8
Q ss_pred eeeeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce
Q 026963 12 RVYTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR 91 (230)
Q Consensus 12 kvytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~ 91 (230)
+-+....++++|||+|||+.+++++|+++|++||.|..|.+..+..++.++|||||+|.+.++|..|++.|||..|.|++
T Consensus 17 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 17 SSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CCCCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred cccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 33455567899999999999999999999999999943333222236899999999999999999999999999999999
Q ss_pred eEEEecC
Q 026963 92 LKVSYAS 98 (230)
Q Consensus 92 L~VsyA~ 98 (230)
|+|+||.
T Consensus 97 l~v~~a~ 103 (115)
T 2cpx_A 97 LVIEFGK 103 (115)
T ss_dssp CEEEECC
T ss_pred EEEEEcc
Confidence 9999994
No 102
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=3.9e-20 Score=130.53 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=72.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
+|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++. +|..+.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999996 999999999999986
No 103
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=133.12 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=74.0
Q ss_pred eeccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC--Cce
Q 026963 14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL--GNR 91 (230)
Q Consensus 14 ytv~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~--Gr~ 91 (230)
|....++++|||+|||+.+++++|+++|++||+|.+|.++.+ +|||||+|.+.++|..|++.|||..|. |++
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 445677899999999999999999999999999999999864 689999999999999999999999999 999
Q ss_pred eEEEecCC
Q 026963 92 LKVSYASQ 99 (230)
Q Consensus 92 L~VsyA~e 99 (230)
|+|.||.+
T Consensus 85 l~V~~a~~ 92 (97)
T 1why_A 85 LRVDFAKS 92 (97)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99999943
No 104
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=6.7e-20 Score=140.30 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.|..|||+||++.+++++|++||++||+|.+|++.. ++|||||+|.+.++|..|++.|||..++|++|+|.+|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467899999999999999999999999999999975 5899999999999999999999999999999999999
No 105
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=139.01 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=70.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce--eCCceeEE
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV--FLGNRLKV 94 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~--f~Gr~L~V 94 (230)
+.++++|||+|||+.+++++|.++|++||+|.+|.++.+ +|||||+|++.++|..|++.|||.. +.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 467899999999999999999999999999999999864 6999999999999999999998754 99999999
Q ss_pred EecC
Q 026963 95 SYAS 98 (230)
Q Consensus 95 syA~ 98 (230)
+||.
T Consensus 86 ~~a~ 89 (104)
T 1wex_A 86 NYST 89 (104)
T ss_dssp EECS
T ss_pred EEcc
Confidence 9994
No 106
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.6e-21 Score=149.52 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=111.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCCC
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQF 100 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~ 100 (230)
++|||+|||..+++++|+++|++||+|.+|.++.++. +.++|||||+|.+.++|..|++.|||..+.|++|+|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999865 779999999999999999999999999999999999999543
Q ss_pred CChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCCce
Q 026963 101 ESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPIT 178 (230)
Q Consensus 101 Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (230)
....... ...+- .|+|..+.+.+.++ +..+| .+.++.++.+.-+...++ .+|..+....+|..+
T Consensus 80 ~~~~~~~----------~~~l~v~nl~~~~t~~~l~~~f~~~G---~i~~~~i~~~~~~~~~~g-~afV~f~~~~~A~~A 145 (166)
T 3md3_A 80 QQSSSDD----------TFNLFVGDLNVNVDDETLRNAFKDFP---SYLSGHVMWDMQTGSSRG-YGFVSFTSQDDAQNA 145 (166)
T ss_dssp CCCCCTT----------CEEEEEESCCTTCCHHHHHHHHTTST---TEEEEEEEECTTTCCEEE-EEEEEESCHHHHHHH
T ss_pred CCCCCCC----------CceEEECCCCCCCCHHHHHHHHhccC---CeeEEEEEecCCCCCcce-EEEEEeCCHHHHHHH
Confidence 2211000 00111 46777776666655 66677 333344434434444555 567777666666666
Q ss_pred eeccCcccccc
Q 026963 179 RVSSDKDYFAS 189 (230)
Q Consensus 179 ~~~~~~~~~~~ 189 (230)
.-.+|...|.+
T Consensus 146 ~~~l~g~~~~g 156 (166)
T 3md3_A 146 MDSMQGQDLNG 156 (166)
T ss_dssp HHHHTTCEETT
T ss_pred HHHhCCCccCC
Confidence 55555555544
No 107
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=1.3e-19 Score=156.17 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=76.1
Q ss_pred eeccCCCCeEEEcCCCCCCCHHHHHHhhccCC--cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce
Q 026963 14 YTVCDESRYLIVRNVPSLGCGDDLLKLFATYG--DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR 91 (230)
Q Consensus 14 ytv~~eS~~LyV~NLP~~~teedL~~LFS~fG--~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~ 91 (230)
|+......+|||+|||+.+++++|+++|++|| +|++|+|+.|+.|++++|||||+|.+.++|..||+.|||+.|.|+.
T Consensus 62 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~ 141 (229)
T 3q2s_C 62 YTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 141 (229)
T ss_dssp -------CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBC
T ss_pred ccCCCCccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEE
Confidence 55556778999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred eEEEec
Q 026963 92 LKVSYA 97 (230)
Q Consensus 92 L~VsyA 97 (230)
|+|.||
T Consensus 142 l~V~~a 147 (229)
T 3q2s_C 142 PVVTPV 147 (229)
T ss_dssp CEEEEC
T ss_pred eEEEEC
Confidence 999999
No 108
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=139.48 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=76.5
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcc-eEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963 16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDI-EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (230)
Q Consensus 16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I-~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V 94 (230)
...++.+|||+|||+.+++++|+++|++||.| .+|.++.|+ ++.++|||||+|.+.++|..|+.. ||..|.|++|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 35678899999999999999999999999999 899999998 899999999999999999999998 999999999999
Q ss_pred Eec
Q 026963 95 SYA 97 (230)
Q Consensus 95 syA 97 (230)
.+|
T Consensus 89 ~~a 91 (114)
T 2cpy_A 89 HVV 91 (114)
T ss_dssp EEE
T ss_pred EEC
Confidence 999
No 109
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=133.12 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=72.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||.| .++.+ .++.++|||||+|.+.++|..|+..|||..|.|++|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3568899999999999999999999999988 56666 6799999999999999999999999999999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
|.+
T Consensus 88 a~~ 90 (101)
T 2fc9_A 88 QGP 90 (101)
T ss_dssp CSS
T ss_pred cCC
Confidence 943
No 110
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=137.16 Aligned_cols=79 Identities=25% Similarity=0.344 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||..+++++|+++|++||+|.+|.++.+. +.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 357899999999999999999999999999999999885 458999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 105 ~ 105 (109)
T 2err_A 105 T 105 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 111
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=7e-20 Score=145.67 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 125 ~~ 126 (135)
T 2lea_A 125 RY 126 (135)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 112
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=142.81 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=71.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC--ceeCCceeEE
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE--FVFLGNRLKV 94 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG--~~f~Gr~L~V 94 (230)
+.++++|||+|||+.++++||+++|++||+|.+|.++.+ +|||||+|++.++|..|++.|+| ..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 567899999999999999999999999999999999975 69999999999999999999985 6899999999
Q ss_pred EecCC
Q 026963 95 SYASQ 99 (230)
Q Consensus 95 syA~e 99 (230)
+||..
T Consensus 102 ~~a~~ 106 (119)
T 2ad9_A 102 QFSNH 106 (119)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99943
No 113
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=7e-19 Score=136.49 Aligned_cols=79 Identities=10% Similarity=0.096 Sum_probs=75.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCc---ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGD---IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~---I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
..+..+|||+|||+.++++||+++|+.||. |.+|+++.++. ++++|||||+|.+.++|..|++ |||..|.|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 356789999999999999999999999999 89999999987 9999999999999999999999 999999999999
Q ss_pred EEec
Q 026963 94 VSYA 97 (230)
Q Consensus 94 VsyA 97 (230)
|.+|
T Consensus 92 V~~a 95 (118)
T 2db1_A 92 VFKS 95 (118)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9999
No 114
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.79 E-value=3.8e-21 Score=152.07 Aligned_cols=163 Identities=15% Similarity=0.095 Sum_probs=118.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCC--CceeEEEEEEccHhHHHHHHHHhcCceeC---Ccee
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCD--PFTDVYFIKFRLFSNARFAKRKLDEFVFL---GNRL 92 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tg--ksrG~AFV~F~d~edA~~A~~~LnG~~f~---Gr~L 92 (230)
+++++|||+|||+.+++++|+++|++||+|.+|.++.++.++ .++|||||+|.+.++|..|++.|||..+. ++++
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 367899999999999999999999999999999999998887 89999999999999999999999999887 6789
Q ss_pred EEEecCCCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhccccccccccc
Q 026963 93 KVSYASQFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRIS 170 (230)
Q Consensus 93 ~VsyA~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (230)
.+.++......... ...+- .|+|..+++...++ +..+| .+.++.+++.. +...++ .+|..|.
T Consensus 81 ~~~~~~~~~~~~~~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G---~i~~v~~~~~~-~g~~~g-~afV~f~ 144 (175)
T 3nmr_A 81 QMKPADSEKNNAVE-----------DRKLFIGMISKKCTENDIRVMFSSFG---QIEECRILRGP-DGLSRG-CAFVTFT 144 (175)
T ss_dssp EEEECGGGCCSCGG-----------GSEEEEESCCTTCCHHHHHHHHGGGS---CEEEEEEEECT-TSCEEE-EEEEEES
T ss_pred EEccccccccccCC-----------CCeEEEcCCCCcCCHHHHHHHHHhCC---CEEEEEEEECC-CCCEEE-EEEEEEC
Confidence 99988432211100 01122 57888877777666 77777 34334443332 233455 5777777
Q ss_pred ccCCCCceeeccCcc-cccccCchhhH
Q 026963 171 HVNESPITRVSSDKD-YFASQSMNQTV 196 (230)
Q Consensus 171 ~~~~~~~~~~~~~~~-~~~~~~~~~~v 196 (230)
...+|..+.-.+|.. .+.+..++.+|
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 777777776666643 34443455444
No 115
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.79 E-value=4.6e-19 Score=140.42 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.+.+|||+|||..+++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4689999999999999999999999999999999999889999999999999999999999999999999999999998
No 116
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-19 Score=134.23 Aligned_cols=79 Identities=13% Similarity=0.090 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceE-EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEE-CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~-v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
.++.+|||+|||+.++++||+++|++||.|.+ |.++.+ .+++++|||||+|.+.++|..|+.. ||..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45689999999999999999999999999998 889888 7899999999999999999999998 99999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
+.
T Consensus 91 ~~ 92 (104)
T 1wg5_A 91 SS 92 (104)
T ss_dssp EC
T ss_pred CC
Confidence 84
No 117
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.8e-19 Score=129.28 Aligned_cols=74 Identities=22% Similarity=0.376 Sum_probs=70.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++ +|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467899999999999999999999999999999997 48999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 77 a~ 78 (90)
T 2dnq_A 77 SK 78 (90)
T ss_dssp SS
T ss_pred CC
Confidence 94
No 118
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=3.4e-20 Score=138.23 Aligned_cols=80 Identities=11% Similarity=0.085 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++.+|||+|||+.+++++|+++|++||+|.. .++.+..++.++|||||+|.+.++|..|++ |||..|.|+.|+|.||
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35779999999999999999999999999998 777777889999999999999999999999 9999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 119
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.3e-19 Score=131.57 Aligned_cols=76 Identities=28% Similarity=0.408 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.+ +|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46789999999999999999999999999999999865 699999999999999999999999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 87 ~~ 88 (99)
T 2cpj_A 87 CH 88 (99)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 120
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.6e-19 Score=127.75 Aligned_cols=74 Identities=23% Similarity=0.333 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh-cCceeCCceeEEEe
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL-DEFVFLGNRLKVSY 96 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L-nG~~f~Gr~L~Vsy 96 (230)
.++++|||+|||..+++++|+++|++||+|.+|.++.+ +|||||+|.+.++|..|++.| ||..+.|++|+|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45689999999999999999999999999999999864 699999999999999999999 99999999999999
Q ss_pred c
Q 026963 97 A 97 (230)
Q Consensus 97 A 97 (230)
|
T Consensus 84 a 84 (85)
T 2ytc_A 84 G 84 (85)
T ss_dssp C
T ss_pred c
Confidence 8
No 121
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.78 E-value=2.3e-20 Score=147.32 Aligned_cols=152 Identities=13% Similarity=0.099 Sum_probs=112.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++++|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|+.. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999995 679999999999993
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCC
Q 026963 99 QFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESP 176 (230)
Q Consensus 99 e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (230)
. ..+.. -...+- .|+|..+.+.+.++ +..+| .+.++.++..+-+...++ .+|..|....++.
T Consensus 80 ~---~~~~~---------~~~~l~V~nlp~~~t~~~l~~~F~~~G---~i~~~~i~~~~~~g~~~g-~afV~f~~~~~a~ 143 (167)
T 2cjk_A 80 P---RDEQD---------KTGKIFVGGIGPDVRPKEFEEFFSQWG---TIIDAQLMLDKDTGQSRG-FGFVTYDSADAVD 143 (167)
T ss_dssp C---HHHHH---------HCEEEEEEEECTTCCHHHHHHHHHTTS---CCSEEECCCSSSSSTTSE-EEEEEESSHHHHH
T ss_pred c---hhhcc---------CCCeEEECCCCCCCCHHHHHHHHHhCc---cEEEEEEEEcCCCCccce-EEEEEECCHHHHH
Confidence 2 21110 001121 56777777776666 77777 444444444444455666 5677776666655
Q ss_pred ceeeccCcccccc
Q 026963 177 ITRVSSDKDYFAS 189 (230)
Q Consensus 177 ~~~~~~~~~~~~~ 189 (230)
.+.- +|..+|.+
T Consensus 144 ~A~~-~~~~~~~g 155 (167)
T 2cjk_A 144 RVCQ-NKFIDFKD 155 (167)
T ss_dssp HHHH-CSEECSSS
T ss_pred HHHh-CCCEEeCC
Confidence 4432 44444444
No 122
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-19 Score=137.27 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.+++|||+|||+.+++++|+++|++||+|.+|.++. ++|||||+|.+.++|..|++.|||..|.|++|+|+||+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 356899999999999999999999999999999875 46899999999999999999999999999999999995
Q ss_pred C
Q 026963 99 Q 99 (230)
Q Consensus 99 e 99 (230)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 123
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.7e-19 Score=134.26 Aligned_cols=80 Identities=13% Similarity=0.117 Sum_probs=73.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++.+|||+|||+.++++||+++|++||.| +|.|+.++ +++++|||||+|.+.++|..|+ .+||..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 3456799999999999999999999999955 99999997 8999999999999999999999 5799999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
+..
T Consensus 89 ~~~ 91 (102)
T 1wez_A 89 NST 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 853
No 124
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=132.71 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC-----cee
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG-----NRL 92 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G-----r~L 92 (230)
..+.+|||+|||+.+++++|+++|++||+|..|.++.+ |||||+|.+.++|..|++.|||+.|.| ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 35679999999999999999999999999999999876 899999999999999999999999999 999
Q ss_pred EEEecCC
Q 026963 93 KVSYASQ 99 (230)
Q Consensus 93 ~VsyA~e 99 (230)
+|.+|.+
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 9999943
No 125
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.78 E-value=1e-18 Score=134.70 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=74.3
Q ss_pred cCCCCeEEEcCCCC-----CCCHHHHHHhhccCCcceEEEeecCCCC-CCceeEEEEEEccHhHHHHHHHHhcCceeCCc
Q 026963 17 CDESRYLIVRNVPS-----LGCGDDLLKLFATYGDIEECKPMDAEDC-DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN 90 (230)
Q Consensus 17 ~~eS~~LyV~NLP~-----~~teedL~~LFS~fG~I~~v~il~d~~t-gksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr 90 (230)
+.++++|+|+||.. ..+++||+++|++||+|.+|.|+.++.+ +.++|||||+|.+.++|..|++.|||..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 56899999999973 2367999999999999999999998754 68999999999999999999999999999999
Q ss_pred eeEEEecC
Q 026963 91 RLKVSYAS 98 (230)
Q Consensus 91 ~L~VsyA~ 98 (230)
+|+|.||+
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999994
No 126
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.2e-19 Score=132.29 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.+++|||+|||..+++++|+++|++||+|.+|.++. ++|||||+|.+.++|..|+..|||..|.|+.|+|.||.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 367999999999999999999999999999999983 47999999999999999999999999999999999994
No 127
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.78 E-value=8.6e-19 Score=143.34 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=88.3
Q ss_pred CeEEEcCC----CCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEcc----HhH----HHHHHH--HhcCce
Q 026963 21 RYLIVRNV----PSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRL----FSN----ARFAKR--KLDEFV 86 (230)
Q Consensus 21 ~~LyV~NL----P~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d----~ed----A~~A~~--~LnG~~ 86 (230)
..|||+|| |+.+++.+|+++|++||+|.+|.++.|++||.++|||||.|.| +++ |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999997 544 899988 899999
Q ss_pred eCCceeEEEecCCCCChHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 026963 87 FLGNRLKVSYASQFESLADTKDKLETRRKEVLARLNSGRSKVP 129 (230)
Q Consensus 87 f~Gr~L~VsyA~e~Es~~d~r~Kl~~rr~ev~~Rl~~n~~~~~ 129 (230)
|.|++|+|.+-++-.. ..+.++.-..-.+-+.+++.|+.+..
T Consensus 83 I~Gr~irV~ln~~g~~-~~~~~~~i~~~~~~~~~~~~~~~~~~ 124 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL-NNIISKFVEINVKKLQKLQENLKKAK 124 (136)
T ss_dssp ETTEEEEEEECCTTHH-HHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ecCcEEEEEECcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999975444 55556555444555667777765543
No 128
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=129.88 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=73.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|..|++.|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35678999999999999999999999885 677888888899999999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 89 a~ 90 (102)
T 2fc8_A 89 AK 90 (102)
T ss_dssp CC
T ss_pred ec
Confidence 94
No 129
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.5e-19 Score=133.12 Aligned_cols=76 Identities=14% Similarity=0.221 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||..+++++|+++|++||+|.+|.++.+ +|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45779999999999999999999999999999999976 699999999999999999999999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 97 ~~ 98 (109)
T 1x4g_A 97 KE 98 (109)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 130
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=4.9e-19 Score=134.49 Aligned_cols=79 Identities=11% Similarity=0.043 Sum_probs=75.5
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCc---ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGD---IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~---I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
.++..+|||+|||+.++++||+++|+.||. |.+|.++.++. ++++|||||+|.+.++|..|+. |||..+.|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456789999999999999999999999999 99999999987 9999999999999999999999 999999999999
Q ss_pred EEec
Q 026963 94 VSYA 97 (230)
Q Consensus 94 VsyA 97 (230)
|.+|
T Consensus 86 V~~a 89 (107)
T 2lmi_A 86 VYEI 89 (107)
T ss_dssp CEEC
T ss_pred EEEC
Confidence 9999
No 131
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.4e-19 Score=140.26 Aligned_cols=77 Identities=22% Similarity=0.276 Sum_probs=70.2
Q ss_pred cCCCCeEEEcCCCCC-CCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC--ceeCCceeE
Q 026963 17 CDESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE--FVFLGNRLK 93 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~-~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG--~~f~Gr~L~ 93 (230)
..++++|||+|||+. ++++||.++|++||+|.+|.++.. +|||||+|++.++|..|++.||| ..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457899999999998 999999999999999999999753 69999999999999999999865 559999999
Q ss_pred EEecCC
Q 026963 94 VSYASQ 99 (230)
Q Consensus 94 VsyA~e 99 (230)
|+||..
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 999953
No 132
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=2e-20 Score=143.31 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceE--------EEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEE--------CKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG 89 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~--------v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G 89 (230)
.++++|||+|||..+++++|+++|++||+|.. |.++.++.++.++|||||+|.+.++|..|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46789999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ceeEEEec
Q 026963 90 NRLKVSYA 97 (230)
Q Consensus 90 r~L~VsyA 97 (230)
++|+|+||
T Consensus 85 ~~l~V~~a 92 (116)
T 2lcw_A 85 NPIKVSFA 92 (116)
Confidence 99999999
No 133
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=1.5e-18 Score=142.11 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++.+|||+|||..+++++|+++|++||+|..|.++.+..++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 203 ~ 203 (216)
T 2qfj_A 203 V 203 (216)
T ss_dssp S
T ss_pred c
Confidence 4
No 134
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.77 E-value=5.1e-19 Score=132.06 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++++|||+|||+.+++++|+++|++||+|.+|.++.++ ++.++|||||+|.+.++|..|+. ||..+.|+.|.|.+|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45789999999999999999999999999999999998 89999999999999999999999 9999999999999994
No 135
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=8e-19 Score=130.47 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=69.5
Q ss_pred ccCCCCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963 16 VCDESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (230)
Q Consensus 16 v~~eS~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V 94 (230)
...++++|||+|||+ .+++++|+++|++||+|.+|.+. +|||||+|.+.++|..|++.|||..|.|++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 346788999999998 99999999999999999999984 589999999999999999999999999999999
Q ss_pred EecCC
Q 026963 95 SYASQ 99 (230)
Q Consensus 95 syA~e 99 (230)
.||..
T Consensus 78 ~~a~~ 82 (96)
T 2kvi_A 78 EVSSS 82 (96)
T ss_dssp EEEEC
T ss_pred EEcCc
Confidence 99943
No 136
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=5.8e-19 Score=131.55 Aligned_cols=73 Identities=23% Similarity=0.273 Sum_probs=70.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++|||+|||+.+++++|+++|++||+|.+|.++.+ ++|||||+|.+.++|..|++.|||..|.|++|+|.||.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 47999999999999999999999999999999976 68999999999999999999999999999999999994
No 137
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=1.9e-18 Score=136.08 Aligned_cols=80 Identities=24% Similarity=0.288 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC--ceeEEE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRLKVS 95 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G--r~L~Vs 95 (230)
.++.+|||+|||..+++++|+++|++||+|..+.++.+..++.++|+|||+|.+.++|..|++.|||..|.| ++|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 356799999999999999999999999999999999998899999999999999999999999999999988 999999
Q ss_pred ec
Q 026963 96 YA 97 (230)
Q Consensus 96 yA 97 (230)
||
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 138
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=1.7e-18 Score=129.87 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=70.2
Q ss_pred eccCCCCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 15 TVCDESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 15 tv~~eS~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
....++++|||+|||+ .+++++|+++|++||+|.+|.+. +|||||+|.+.++|..|++.|||..|.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456789999999998 99999999999999999999983 69999999999999999999999999999999
Q ss_pred EEecC
Q 026963 94 VSYAS 98 (230)
Q Consensus 94 VsyA~ 98 (230)
|+||.
T Consensus 89 V~~a~ 93 (97)
T 2xnq_A 89 LEVSS 93 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99994
No 139
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=130.67 Aligned_cols=78 Identities=18% Similarity=0.139 Sum_probs=71.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
...+++|||+|||+.+++++|+++|++||+|. +.++. +.++|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 66665 36789999999999999999999999999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
|.+
T Consensus 91 a~~ 93 (97)
T 2e5j_A 91 ARQ 93 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 954
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=9.6e-19 Score=139.34 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=73.2
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++.+ ++|||||+|.+.++|..|+..|||..|.|++|+|+|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 356789999999999999999999999999999999876 589999999999999999999999999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
|.+
T Consensus 145 a~~ 147 (150)
T 2i2y_A 145 SNG 147 (150)
T ss_dssp CCC
T ss_pred cCC
Confidence 953
No 141
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-19 Score=130.71 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|..|++.|||..+.|++|+|.||
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 357899999999999999999999999999876 345889999999999999999999999999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 89 ~~ 90 (96)
T 1fjc_A 89 GE 90 (96)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 142
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=1.3e-18 Score=130.62 Aligned_cols=74 Identities=24% Similarity=0.372 Sum_probs=69.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.++ +|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3567899999999999999999999999999999987 36999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 80 a~ 81 (103)
T 2dgu_A 80 AK 81 (103)
T ss_dssp CC
T ss_pred cC
Confidence 94
No 143
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.77 E-value=1.8e-18 Score=139.85 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++.+|||+|||+.+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 192 ~~ 193 (198)
T 2yh0_A 192 SV 193 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 144
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=126.50 Aligned_cols=73 Identities=29% Similarity=0.425 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.+++ |||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4678999999999999999999999999999999974 49999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 80 ~ 80 (92)
T 2dgt_A 80 T 80 (92)
T ss_dssp S
T ss_pred c
Confidence 4
No 145
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=1.8e-18 Score=144.78 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
...+|||+|||+.+++++|+++|++||.|++|.|+.|. +.++|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45789999999999999999999999999999999875 458999999999999999999999999999999999999
No 146
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.77 E-value=8.2e-19 Score=138.33 Aligned_cols=80 Identities=11% Similarity=0.157 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++.+|||+|||..+++++|+++|++||+|.+|.++.++.++.++|||||+|.+.++|..|++ +||..|.|++|+|.||.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46789999999999999999999999999999999999899999999999999999999998 89999999999999994
Q ss_pred C
Q 026963 99 Q 99 (230)
Q Consensus 99 e 99 (230)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 147
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=1.6e-18 Score=139.75 Aligned_cols=78 Identities=10% Similarity=0.081 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCc---ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGD---IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~---I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V 94 (230)
.++.+|||+|||+.++++||+++|++||. |.+|.++.|+. ++++|||||+|.+.++|..|++ |||..|.|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45678999999999999999999999999 89999999987 9999999999999999999999 9999999999999
Q ss_pred Eec
Q 026963 95 SYA 97 (230)
Q Consensus 95 syA 97 (230)
.+|
T Consensus 120 ~~a 122 (136)
T 2hgl_A 120 FKS 122 (136)
T ss_dssp EEC
T ss_pred EEC
Confidence 999
No 148
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=1.2e-18 Score=144.86 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++.+|||+|||+.+++++|+++|++||+|.+|.++.+. ++.++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456799999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 165 ~ 165 (177)
T 2f3j_A 165 A 165 (177)
T ss_dssp S
T ss_pred c
Confidence 4
No 149
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=2e-18 Score=132.20 Aligned_cols=74 Identities=23% Similarity=0.318 Sum_probs=70.3
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||..+++++|+++|++||+|.+|.++ +|||||+|.+.++|..|++.|||..|.|++|+|+|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3467899999999999999999999999999999998 58999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 100 a~ 101 (108)
T 2jvo_A 100 SK 101 (108)
T ss_dssp CS
T ss_pred ec
Confidence 94
No 150
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=128.76 Aligned_cols=78 Identities=28% Similarity=0.354 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEE-EeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEEC-KPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v-~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.+.+|||+|||+.+++++|+++|++||+|.+| .++.++.+ |.|||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46799999999999999999999999999999 58887654 44999999999999999999999999999999999
Q ss_pred CCC
Q 026963 98 SQF 100 (230)
Q Consensus 98 ~e~ 100 (230)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 643
No 151
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=3.2e-18 Score=138.22 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++.+|||+|||+.+++++|+++|++||+|..|.++.+..++.++|||||+|.+.++|..|+.. +|..|.|+.|.|.||.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 457999999999999999999999999999999999998999999999999999999999987 8999999999999993
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.76 E-value=3.1e-18 Score=133.97 Aligned_cols=79 Identities=24% Similarity=0.275 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc--eeEEEe
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN--RLKVSY 96 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr--~L~Vsy 96 (230)
++.+|||+|||..+++++|+++|++||+|..+.++.+..++.++|+|||+|.+.++|..|++.|||..|.|+ +|+|+|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 567899999999999999999999999999999999988999999999999999999999999999999996 499999
Q ss_pred c
Q 026963 97 A 97 (230)
Q Consensus 97 A 97 (230)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 7
No 153
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=125.47 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=70.0
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|||+.+++++|+++|++||+|.+|.+++ |||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999984 4999999999999999999999999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
|.+
T Consensus 78 a~~ 80 (90)
T 2dnp_A 78 STK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 943
No 154
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=1.7e-18 Score=126.76 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
.+++|||+|||+.+++++|+++|++| +|.+|.+. +++|||||+|.+.++|..|++.|||..+.|++|+|.||+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99999984 578999999999999999999999999999999999996
Q ss_pred C
Q 026963 99 Q 99 (230)
Q Consensus 99 e 99 (230)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=134.61 Aligned_cols=72 Identities=22% Similarity=0.324 Sum_probs=65.1
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHhhccC-CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce
Q 026963 18 DESRY-LIVRNVPSLGCGDD----LLKLFATY-GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR 91 (230)
Q Consensus 18 ~eS~~-LyV~NLP~~~teed----L~~LFS~f-G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~ 91 (230)
.|+.+ |||+|||+.+++++ |+++|++| |+|.+| |+ |||||.|.++++|..|++.|||..|+|++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 35776 99999999999877 66999999 599988 34 99999999999999999999999999999
Q ss_pred eEEEecCC
Q 026963 92 LKVSYASQ 99 (230)
Q Consensus 92 L~VsyA~e 99 (230)
|+|+||+.
T Consensus 76 i~v~~A~~ 83 (96)
T 2diu_A 76 IIVSFTPK 83 (96)
T ss_dssp CEEESSCC
T ss_pred EEEEecCC
Confidence 99999953
No 156
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=1.8e-18 Score=135.05 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCC-cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG-~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
...+|||+|||+.+++++|+++|++|| +|..|.+..+ .++|||||+|.+.++|..|++.|||..|.|++|+|.+|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 456899999999999999999999999 9999998643 47899999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 103 ~ 103 (111)
T 2jvr_A 103 D 103 (111)
T ss_dssp C
T ss_pred C
Confidence 4
No 157
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=2.2e-18 Score=130.70 Aligned_cols=72 Identities=19% Similarity=0.315 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~-~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.+++|||+|||+. +++++|+++|++||+|.+|.+ ++|||||+|.+.++|..|++.|||..|.|++|+|+||
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999 999999999999999999998 4699999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 98 ~ 98 (110)
T 1wf1_A 98 G 98 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 158
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.75 E-value=4.6e-19 Score=152.33 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 18 DESRYLIVRNVPSLGCGDDLL----KLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~----~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
.++++|||+|||+.+++++|+ ++|++||+|.+|.++. +++++|||||+|.+.++|..|++.|||..|.|++|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 468899999999999999965 9999999999999986 588999999999999999999999999999999999
Q ss_pred EEecC
Q 026963 94 VSYAS 98 (230)
Q Consensus 94 VsyA~ 98 (230)
|.||.
T Consensus 84 v~~a~ 88 (282)
T 3pgw_A 84 IQYAK 88 (282)
T ss_pred EEEec
Confidence 99994
No 159
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-18 Score=126.17 Aligned_cols=75 Identities=25% Similarity=0.316 Sum_probs=69.8
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccC--CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeE
Q 026963 16 VCDESRYLIVRNVPSLGCGDDLLKLFATY--GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLK 93 (230)
Q Consensus 16 v~~eS~~LyV~NLP~~~teedL~~LFS~f--G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~ 93 (230)
...++++|||+|||+.+++++|+++|++| |.|..|.++ +|||||+|.+.++|..|+..|||..|.|++|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34578899999999999999999999999 999999875 57999999999999999999999999999999
Q ss_pred EEecC
Q 026963 94 VSYAS 98 (230)
Q Consensus 94 VsyA~ 98 (230)
|.||.
T Consensus 83 v~~a~ 87 (99)
T 2cpd_A 83 VTLAK 87 (99)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 99994
No 160
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=4.1e-18 Score=134.60 Aligned_cols=78 Identities=21% Similarity=0.361 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC---ceeEEE
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG---NRLKVS 95 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G---r~L~Vs 95 (230)
++.+|||+|||..+++++|+++|++||+|.+|.++.+. ++.++|||||+|.+.++|..|++.|||..+.+ ++|+|+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56799999999999999999999999999999999985 58999999999999999999999999998874 999999
Q ss_pred ec
Q 026963 96 YA 97 (230)
Q Consensus 96 yA 97 (230)
||
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 98
No 161
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=125.90 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|+++|++||+|.+| +.++.++. ||||+|.+.++|..|+. |||..|.|+.|+|.+|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456799999999999999999999999999998 55666665 99999999999999999 9999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 80 ~~ 81 (94)
T 2e5g_A 80 EQ 81 (94)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 162
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-18 Score=126.70 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCc-ceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC-ceeCCceeEEE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGD-IEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE-FVFLGNRLKVS 95 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~-I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG-~~f~Gr~L~Vs 95 (230)
.++++|||+|||+.+++++|+++|++||+ |..+.+. ++|||||+|.+.++|..|++.||| ..|.|++|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46789999999999999999999999999 6666653 469999999999999999999999 99999999999
Q ss_pred ecC
Q 026963 96 YAS 98 (230)
Q Consensus 96 yA~ 98 (230)
||.
T Consensus 79 ~a~ 81 (93)
T 2cqh_A 79 YSV 81 (93)
T ss_dssp ECC
T ss_pred Ecc
Confidence 994
No 163
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.6e-18 Score=135.47 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=73.7
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcc----eEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCcee
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDI----EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL 92 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I----~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L 92 (230)
..++.+|||+|||+.++++||+++|++||+| .+|.|+.+ .+++++|||||+|.+.++|..|++. ||..|.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999985 68999998 4899999999999999999999997 9999999999
Q ss_pred EEEec
Q 026963 93 KVSYA 97 (230)
Q Consensus 93 ~VsyA 97 (230)
.|..|
T Consensus 98 ~V~~a 102 (123)
T 2dha_A 98 ELFRS 102 (123)
T ss_dssp CCEEE
T ss_pred EEEEC
Confidence 99999
No 164
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.74 E-value=5.2e-19 Score=152.16 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=119.8
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++.+|||+|||+.+++++|.++|++||+|.+|.++.+..++.++|||||+|.+.++|..|++.|||..+.|++|.|.|
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHhh-cCCCCC-CCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccC
Q 026963 97 ASQFESLADTKDKLETRRKEVLARLN-SGRSKV-PNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVN 173 (230)
Q Consensus 97 A~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (230)
|.......+.. . ...+- .|+|.. +++.+.++ +..+| .+.++.++... +...++ .+|..|....
T Consensus 172 a~~~~~~~~~~---~------~~~l~v~nlp~~~~~~~~l~~~f~~~G---~i~~v~i~~~~-~g~~~g-~afV~f~~~~ 237 (284)
T 3smz_A 172 TDAGQLTPALL---H------SRCLCVDRLPPGFNDVDALCRALSAVH---SPTFCQLACGQ-DGQLKG-FAVLEYETAE 237 (284)
T ss_dssp CCGGGCCTTTT---S------CSEEEEECCCTTCCCHHHHHHHTCSSS---CCSEEEEEECS-SCCEEE-EEEEECSSHH
T ss_pred CCCCCCCcccC---C------ccEEEEecCCcccCCHHHHHHHhhCCC---CeEEEEEEECC-CCCccc-EEEEEeCCHH
Confidence 94322111000 0 01111 467777 46666655 77777 34334443333 344556 6788887777
Q ss_pred CCCceeeccCccccccc
Q 026963 174 ESPITRVSSDKDYFASQ 190 (230)
Q Consensus 174 ~~~~~~~~~~~~~~~~~ 190 (230)
+|..+.-.+|..+|.+.
T Consensus 238 ~A~~A~~~l~g~~~~g~ 254 (284)
T 3smz_A 238 MAEEAQQQADGLSLGGS 254 (284)
T ss_dssp HHHHHHHHHTTCEETTE
T ss_pred HHHHHHHHhCCCccCCe
Confidence 77777666777766543
No 165
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.74 E-value=5e-18 Score=143.50 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 18 DESRYLIVRNVP-SLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 18 ~eS~~LyV~NLP-~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
.++.+|||+||| +.+++++|+++|++||.|.+|+++.+ .+|||||+|.+.++|..|++.|||..|.|++|+|.|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 468899999999 79999999999999999999999876 379999999999999999999999999999999999
Q ss_pred cC
Q 026963 97 AS 98 (230)
Q Consensus 97 A~ 98 (230)
|.
T Consensus 77 s~ 78 (205)
T 3tyt_A 77 SK 78 (205)
T ss_dssp CS
T ss_pred cc
Confidence 94
No 166
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-18 Score=135.45 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=71.0
Q ss_pred eccCCCCeEEE--cCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee-----
Q 026963 15 TVCDESRYLIV--RNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF----- 87 (230)
Q Consensus 15 tv~~eS~~LyV--~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f----- 87 (230)
....++++||| +|||+.+++++|+++|++||+|.+|.++.+ +|||||+|.+.++|..|++.|||+.+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34567889999 669999999999999999999999998753 69999999999999999999999999
Q ss_pred CCceeEEEecC
Q 026963 88 LGNRLKVSYAS 98 (230)
Q Consensus 88 ~Gr~L~VsyA~ 98 (230)
.|++|.|+||.
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 78999999994
No 167
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=1.1e-17 Score=135.10 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=68.3
Q ss_pred CCC--eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeE-EEEEEccHhHHHHHHHHhcCceeCC--ceeE
Q 026963 19 ESR--YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDV-YFIKFRLFSNARFAKRKLDEFVFLG--NRLK 93 (230)
Q Consensus 19 eS~--~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~-AFV~F~d~edA~~A~~~LnG~~f~G--r~L~ 93 (230)
+++ .|||+|||+.+++++|+++|++||+|.+|.+..+ .+|| |||+|.+.++|..|++.|||..|+| ++|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 454 5779999999999999999999999999998864 2577 9999999999999999999999999 8999
Q ss_pred EEecC
Q 026963 94 VSYAS 98 (230)
Q Consensus 94 VsyA~ 98 (230)
|+||+
T Consensus 100 I~~ak 104 (130)
T 3zzy_A 100 IDFSK 104 (130)
T ss_dssp EEECS
T ss_pred EEecC
Confidence 99994
No 168
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=123.06 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|| .+++++|+++|++||+|.+|.+. .++|||||.|.+.++|..|++.|||..|.|++|+|.||
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999996 68999999999999999999985 46799999999999999999999999999999999999
Q ss_pred CC
Q 026963 98 SQ 99 (230)
Q Consensus 98 ~e 99 (230)
.+
T Consensus 85 ~~ 86 (97)
T 1x5p_A 85 RK 86 (97)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 169
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=129.82 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
++.+|||+|||+.++++||+++|++| .|.+|.|+.|+. ++++|||||+|.+.++|..|+ .|||..|.|+.|.|..|
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 45689999999999999999999999 899999999976 999999999999999999999 79999999999999988
No 170
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.73 E-value=8.3e-18 Score=157.80 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++.+|||+|||+.+++++|.++|++||+|+.|.|+.+..|+.++|||||+|.+.++|..|+..|||..|.|++|.|.||
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 180 ~ 180 (437)
T 3pgw_S 180 R 180 (437)
T ss_pred C
Confidence 4
No 171
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=9.9e-18 Score=128.58 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCC---CCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDC---DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~t---gksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V 94 (230)
..+++|||+|||+.+++++|+++|++||+|. +.++.+..+ |+++|||||+|.+.++|..|++.|+ .+.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888888877 7999999999999999999999995 478888888
Q ss_pred EecCC
Q 026963 95 SYASQ 99 (230)
Q Consensus 95 syA~e 99 (230)
..++.
T Consensus 83 ~~~~~ 87 (114)
T 2dnl_A 83 VSSPT 87 (114)
T ss_dssp ECCSS
T ss_pred ccCCC
Confidence 77743
No 172
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=3.5e-18 Score=138.34 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.+..+|||+|||+.++++||+++|++|| |++|.|+.|++ ++++|||||+|.+.++|..|+ .+||..|.|+.|+|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4567999999999999999999999999 77999999976 999999999999999999999 89999999999999999
Q ss_pred CCCC
Q 026963 98 SQFE 101 (230)
Q Consensus 98 ~e~E 101 (230)
...+
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 5443
No 173
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.72 E-value=3.4e-17 Score=140.83 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPSLG-CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~~~-teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
++.+|||+|||+.+ ++++|+++|++||+|.+|.++.+. +|.++|+|||.|.+.++|..|+..|||..|.|++|+|+||
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 56799999999985 899999999999999999999986 6999999999999999999999999999999999999999
Q ss_pred CCC
Q 026963 98 SQF 100 (230)
Q Consensus 98 ~e~ 100 (230)
.+.
T Consensus 262 ~~~ 264 (284)
T 3smz_A 262 APG 264 (284)
T ss_dssp CSS
T ss_pred cCC
Confidence 543
No 174
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.71 E-value=2.8e-17 Score=121.86 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC--CceeEEE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL--GNRLKVS 95 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~--Gr~L~Vs 95 (230)
.+..+|||+|||+.+++++|+++|++||+|.+|.++.+ ++|||||+|.+.++|. .|+|..+. |+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEE
Confidence 35679999999999999999999999999999999874 7899999999999998 46777765 8999999
Q ss_pred ecC
Q 026963 96 YAS 98 (230)
Q Consensus 96 yA~ 98 (230)
+|.
T Consensus 80 ~a~ 82 (89)
T 3d2w_A 80 NAE 82 (89)
T ss_dssp ECC
T ss_pred EcC
Confidence 994
No 175
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=2.1e-17 Score=138.43 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=70.2
Q ss_pred cCCCC--eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCC--cee
Q 026963 17 CDESR--YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLG--NRL 92 (230)
Q Consensus 17 ~~eS~--~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~G--r~L 92 (230)
+.+++ +|||+|||+.+++++|+++|++||+|++|.+..+ .++|||||+|.+.++|..|++.|||..|+| ++|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 33454 5899999999999999999999999999999754 357999999999999999999999999977 999
Q ss_pred EEEecC
Q 026963 93 KVSYAS 98 (230)
Q Consensus 93 ~VsyA~ 98 (230)
+|+||.
T Consensus 117 ~V~~Ak 122 (164)
T 1sjr_A 117 RIDFSK 122 (164)
T ss_dssp EEEECS
T ss_pred EEEEec
Confidence 999994
No 176
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=3e-17 Score=131.03 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=67.3
Q ss_pred CCCCe--EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeE-EEEEEccHhHHHHHHHHhcCceeCC--cee
Q 026963 18 DESRY--LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDV-YFIKFRLFSNARFAKRKLDEFVFLG--NRL 92 (230)
Q Consensus 18 ~eS~~--LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~-AFV~F~d~edA~~A~~~LnG~~f~G--r~L 92 (230)
.+++. |||+|||+.+++++|+++|++||+|.+|.+... .|| |||+|.+.++|..|++.|||..|+| ++|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 35654 679999999999999999999999999999752 286 9999999999999999999999998 599
Q ss_pred EEEecC
Q 026963 93 KVSYAS 98 (230)
Q Consensus 93 ~VsyA~ 98 (230)
+|+||.
T Consensus 95 ~V~~Ak 100 (124)
T 2e5i_A 95 KIEYAR 100 (124)
T ss_dssp EEECCS
T ss_pred EEEEec
Confidence 999994
No 177
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.71 E-value=2.3e-17 Score=126.96 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=71.8
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHhhccCCcceEEEeecCCCC--CCceeEEEEEEccHhHHHHHHHHhcCc
Q 026963 18 DESRYLIVRNV--PSLGC--------GDDLLKLFATYGDIEECKPMDAEDC--DPFTDVYFIKFRLFSNARFAKRKLDEF 85 (230)
Q Consensus 18 ~eS~~LyV~NL--P~~~t--------eedL~~LFS~fG~I~~v~il~d~~t--gksrG~AFV~F~d~edA~~A~~~LnG~ 85 (230)
.+|+.|.+.|+ |.... ++||+++|++||+|.+|.|+.+..+ +.++|+|||+|.+.++|..|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47899999997 33332 3689999999999999999998765 468999999999999999999999999
Q ss_pred eeCCceeEEEecC
Q 026963 86 VFLGNRLKVSYAS 98 (230)
Q Consensus 86 ~f~Gr~L~VsyA~ 98 (230)
.|.|++|+|+|++
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999995
No 178
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=2.2e-17 Score=127.31 Aligned_cols=72 Identities=21% Similarity=0.302 Sum_probs=65.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce-----eE
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR-----LK 93 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~-----L~ 93 (230)
.+.+|||+|||+.+++++|+++|++||+|.+|.++.+ |||||+|.+.++|..|++.|||+.|.|+. ++
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4578999999999999999999999999999999876 89999999999999999999999999999 55
Q ss_pred EEec
Q 026963 94 VSYA 97 (230)
Q Consensus 94 VsyA 97 (230)
|..+
T Consensus 88 v~~~ 91 (115)
T 3beg_B 88 VKVD 91 (115)
T ss_dssp EEEC
T ss_pred eccC
Confidence 5555
No 179
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.70 E-value=3.3e-17 Score=141.37 Aligned_cols=81 Identities=20% Similarity=0.198 Sum_probs=75.2
Q ss_pred cCCCCeEEEcCCCCC-CCHHHHHHhhccCCcceEEEeecCCC-CCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963 17 CDESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAED-CDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~-~teedL~~LFS~fG~I~~v~il~d~~-tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V 94 (230)
..++.+|||+|||+. +++++|+++|++||+|..|.++.+.. |+.++|||||+|.+.++|..|+ .|||..|.|++|+|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 346789999999999 99999999999999999999999877 6999999999999999999999 99999999999999
Q ss_pred EecC
Q 026963 95 SYAS 98 (230)
Q Consensus 95 syA~ 98 (230)
+||.
T Consensus 286 ~~a~ 289 (292)
T 2ghp_A 286 SLAD 289 (292)
T ss_dssp EECC
T ss_pred EEec
Confidence 9994
No 180
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=3e-17 Score=131.11 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcce--EEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIE--ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVS 95 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~--~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vs 95 (230)
.+..+|||+|||+.++++||+++|++| .|. +|.|+.|++ |+++|||||+|.+.++|..|++. +|..|.|++|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 456799999999999999999999999 566 999999987 99999999999999999999985 7899999999999
Q ss_pred ec
Q 026963 96 YA 97 (230)
Q Consensus 96 yA 97 (230)
+|
T Consensus 117 ~a 118 (126)
T 2hgm_A 117 KS 118 (126)
T ss_dssp EE
T ss_pred EC
Confidence 98
No 181
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=2.1e-18 Score=136.63 Aligned_cols=148 Identities=18% Similarity=0.223 Sum_probs=109.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC----C-------cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATY----G-------DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF 87 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~f----G-------~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f 87 (230)
++++|||+|||..+++++|+++|++| | .|.++.+.. ++|||||+|.+.++|..|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 57899999999999999999999999 6 777777654 4799999999999999999 9999999
Q ss_pred CCceeEEEecCCCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccc
Q 026963 88 LGNRLKVSYASQFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSE 165 (230)
Q Consensus 88 ~Gr~L~VsyA~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 165 (230)
.|++|+|.++........ ...+- .|+|..+++.+.++ +..+| .+.++.++...-+...++ .+
T Consensus 76 ~g~~i~v~~~~~~~~~~~------------~~~l~v~nlp~~~t~~~l~~~f~~~G---~v~~v~i~~~~~~g~~~g-~a 139 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLPG------------AHKLFIGGLPNYLNDDQVKELLTSFG---PLKAFNLVKDSATGLSKG-YA 139 (172)
T ss_dssp TTEECEEECCSSCCCCTT------------TTCEEEECCCTTCCHHHHHHHHHTTS---CEEEEEEEECTTTCSEEE-EE
T ss_pred cCceeeecCCcccCCCCC------------CCEEEEEcCCCcCCHHHHHHHHHhcC---CceEEEEEecCCCCCcce-EE
Confidence 999999999865433221 01121 57787777776666 77777 343444444444445566 57
Q ss_pred cccccccCCCCceeeccCcccccc
Q 026963 166 SQRISHVNESPITRVSSDKDYFAS 189 (230)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~ 189 (230)
|..+....++..+.-.+|...|.+
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 140 FCEYVDINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp EEEESSTTHHHHHHHHHTTCEETT
T ss_pred EEEeCCHHHHHHHHHHcCCCEECC
Confidence 777777777766665566655554
No 182
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.70 E-value=4.5e-17 Score=127.63 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=69.4
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
..++++|||+|| .+++++|+++|++||+|.+|.+. .++|||||+|.+.++|..|+..|||..|.|++|+|.|
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999996 48999999999999999999986 4679999999999999999999999999999999999
Q ss_pred cCCC
Q 026963 97 ASQF 100 (230)
Q Consensus 97 A~e~ 100 (230)
|.+.
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 9543
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.70 E-value=3.1e-17 Score=130.80 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecC
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYAS 98 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~ 98 (230)
++.+|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|..|++.|||..|.|++|+|+||.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 46799999999999999999999999999876 4568999999999999999999999999999999999999995
Q ss_pred C
Q 026963 99 Q 99 (230)
Q Consensus 99 e 99 (230)
+
T Consensus 173 ~ 173 (175)
T 1fje_B 173 E 173 (175)
T ss_dssp S
T ss_pred C
Confidence 3
No 184
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.69 E-value=3.7e-17 Score=117.92 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccC----C-------cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATY----G-------DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV 86 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~f----G-------~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~ 86 (230)
.++++|||+|||+.+++++|+++|++| | +|.+|.++.+ +|||||+|.+.++|..|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 9999998865 699999999999999999 999999
Q ss_pred eCCceeEEEe
Q 026963 87 FLGNRLKVSY 96 (230)
Q Consensus 87 f~Gr~L~Vsy 96 (230)
|.|++|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-17 Score=120.12 Aligned_cols=73 Identities=22% Similarity=0.217 Sum_probs=64.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee--CCceeEEE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF--LGNRLKVS 95 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f--~Gr~L~Vs 95 (230)
.++++|||+|||+.+++++|+++|++||+|.+|.++.+ ++|||||+|.+.++|.. ++|..+ .|++|+|+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEE
Confidence 56899999999999999999999999999999999865 68999999999999975 455544 89999999
Q ss_pred ecCC
Q 026963 96 YASQ 99 (230)
Q Consensus 96 yA~e 99 (230)
+|.+
T Consensus 74 ~a~~ 77 (88)
T 1wf0_A 74 NAEP 77 (88)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9953
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=1e-18 Score=150.93 Aligned_cols=162 Identities=10% Similarity=0.042 Sum_probs=108.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCC-cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG-~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
.++.+|||+|||+.+++++|.++|++|| +|.+|.++.+.. +.++|||||.|.+.++|..|+..|||..+.|++|.|.|
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4688999999999999999999999999 999999999866 78999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHhh-cCCCCC-CCcccccc-cCCCCCCCCCCCCcchhhhh-hhhccccccccccccc
Q 026963 97 ASQFESLADTKDKLETRRKEVLARLN-SGRSKV-PNIHSSVD-LGEPSLVTAPLQPNLVSEQI-TSWQRASSESQRISHV 172 (230)
Q Consensus 97 A~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 172 (230)
|.+.......... ......+- .|+|.. +++...++ +..+|. +.++.++...- +...++ .+|..|...
T Consensus 194 a~~~~~~~~~~~~-----~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~---v~~v~i~~~~~~tg~~~g-~afV~F~~~ 264 (292)
T 2ghp_A 194 SNPLEKSKRTDSA-----TLEGREIMIRNLSTELLDENLLRESFEGFGS---IEKINIPAGQKEHSFNNC-CAFMVFENK 264 (292)
T ss_dssp CCCC--------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC---EEEEECCSCCC---CCCE-EEEEEESSH
T ss_pred CCCCccccccccc-----CCCCceEEEECCCcccCCHHHHHHHHhccCC---eeEEEEEecCCcCCCCce-EEEEEeCCH
Confidence 9432221100000 00001111 356666 65555555 666663 32333322221 133455 577888877
Q ss_pred CCCCceeeccCccccccc
Q 026963 173 NESPITRVSSDKDYFASQ 190 (230)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~ 190 (230)
.+|..+. .+|..+|.+.
T Consensus 265 ~~A~~A~-~l~g~~~~g~ 281 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNR 281 (292)
T ss_dssp HHHHHHG-GGTTEEETTE
T ss_pred HHHHHHH-HhcCCEECCc
Confidence 7887777 7777777653
No 187
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.68 E-value=6.6e-17 Score=127.51 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHhhccCCcceEEEeecCCC----CCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963 18 DESRYLIVRNVPS-----LGCGDDLLKLFATYGDIEECKPMDAED----CDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88 (230)
Q Consensus 18 ~eS~~LyV~NLP~-----~~teedL~~LFS~fG~I~~v~il~d~~----tgksrG~AFV~F~d~edA~~A~~~LnG~~f~ 88 (230)
.+|++|+++|+-. ...++||++.|++||+|.+|.|+.++. ++.++|++||+|.+.++|..|++.|||..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3789999999842 124689999999999999999998864 4678899999999999999999999999999
Q ss_pred CceeEEEecC
Q 026963 89 GNRLKVSYAS 98 (230)
Q Consensus 89 Gr~L~VsyA~ 98 (230)
|++|+|+|++
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999995
No 188
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1.6e-16 Score=133.47 Aligned_cols=79 Identities=13% Similarity=0.226 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCC
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQ 99 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e 99 (230)
+++|||+|||+.+++++|.++|++||+|.+|.++.+. ++.++|||||+|++.++|..|+..++ ..|.|++|.|.++.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 5789999999999999999999999999999999986 48999999999999999999998775 599999999999965
Q ss_pred C
Q 026963 100 F 100 (230)
Q Consensus 100 ~ 100 (230)
+
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=121.26 Aligned_cols=80 Identities=19% Similarity=0.152 Sum_probs=69.3
Q ss_pred ccCCCCeEEEcCCCCCCC-----------HHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC
Q 026963 16 VCDESRYLIVRNVPSLGC-----------GDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE 84 (230)
Q Consensus 16 v~~eS~~LyV~NLP~~~t-----------eedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG 84 (230)
.+.++++|+|+||..... +++|+++|++||+|.+|.| .++ .++|||||+|.+.++|..|++.|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456789999999954322 5799999999999999976 443 3799999999999999999999999
Q ss_pred ceeCCceeEEEecCC
Q 026963 85 FVFLGNRLKVSYASQ 99 (230)
Q Consensus 85 ~~f~Gr~L~VsyA~e 99 (230)
..|.|++|+|.||.+
T Consensus 87 ~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 87 RWFGGRQITAQAWDG 101 (112)
T ss_dssp CEETTEECEEEECCS
T ss_pred CEECCcEEEEEEeCC
Confidence 999999999999943
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=1.9e-16 Score=136.01 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=72.5
Q ss_pred ccCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-CceeEE
Q 026963 16 VCDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKV 94 (230)
Q Consensus 16 v~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr~L~V 94 (230)
...++++|||+|||..+++++|+++|++||.|.+|.++.++ +|||||+|.+.++|..|++.|||..|. |++|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34567899999999999999999999999999999999763 599999999999999999999999999 999999
Q ss_pred EecC
Q 026963 95 SYAS 98 (230)
Q Consensus 95 syA~ 98 (230)
+||.
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9993
No 191
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=1.4e-16 Score=134.61 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEe
Q 026963 18 DESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSY 96 (230)
Q Consensus 18 ~eS~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~Vsy 96 (230)
.++++|||+|||+ .+++++|+++|++||+|.+|.++.++ +|||||+|.+.++|..|++.|||..|.|++|.|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4688999999999 99999999999999999999999874 79999999999999999999999999999999999
Q ss_pred cCC
Q 026963 97 ASQ 99 (230)
Q Consensus 97 A~e 99 (230)
|..
T Consensus 107 a~~ 109 (229)
T 2adc_A 107 SKH 109 (229)
T ss_dssp CSC
T ss_pred ecC
Confidence 953
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=130.38 Aligned_cols=75 Identities=19% Similarity=0.332 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 19 ESRYLIVRNVPS-LGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 19 eS~~LyV~NLP~-~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.+++|||+|||+ .+++++|+++|++||+|.+|.++.++ +|||||+|.+.++|..|++.|||..|.|++|+|.||
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999999874 799999999999999999999999999999999999
Q ss_pred C
Q 026963 98 S 98 (230)
Q Consensus 98 ~ 98 (230)
.
T Consensus 77 ~ 77 (198)
T 1qm9_A 77 K 77 (198)
T ss_dssp C
T ss_pred c
Confidence 5
No 193
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.65 E-value=5.4e-17 Score=124.48 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=63.0
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCcee
Q 026963 25 VRNVPSLGCGDDLLKLF------------ATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL 92 (230)
Q Consensus 25 V~NLP~~~teedL~~LF------------S~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L 92 (230)
+.|||+.+++++|.+.| ++||+|.+|.|+.+.. +.++|||||.|.+.++|..|++.|||..|.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45555555666666555 9999999999998864 7899999999999999999999999999999999
Q ss_pred EEEecC
Q 026963 93 KVSYAS 98 (230)
Q Consensus 93 ~VsyA~ 98 (230)
+|+|+|
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 999986
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=3.7e-17 Score=130.37 Aligned_cols=151 Identities=9% Similarity=0.008 Sum_probs=108.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||..+++++|+++|++||.|.. .++.+..++.++|||||+|.+.++|..|+ .|||..+.|++|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 46789999999999999999999999999987 44455677899999999999999999999 59999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCC
Q 026963 98 SQFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNES 175 (230)
Q Consensus 98 ~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (230)
...+...... ...+- .|+|..+.+.+.++ +...|... ++ ..+...++ .+|..|....++
T Consensus 89 ~~~~~~~~~~----------~~~l~v~nlp~~~t~~~l~~~F~~~g~v~------~~--~~~~~~~g-~afV~f~~~~~A 149 (175)
T 1fje_B 89 KGRDSKKVRA----------ARTLLAKNLSFNITEDELKEVFEDALEIR------LV--SQDGKSKG-IAYIEFKSEADA 149 (175)
T ss_dssp CCSSCSTTGG----------GGEEEEESCCSSCCHHHHHHHCTTCSEEE------EE--CSSSSCCS-EEEEECSSHHHH
T ss_pred CCcccccccc----------CCEEEEeCCCCCCCHHHHHHHHHhcCeEE------Ee--cCCCCCce-EEEEEECCHHHH
Confidence 5433221100 01111 57777777776666 66666222 11 22334455 566777666666
Q ss_pred CceeeccCcccccc
Q 026963 176 PITRVSSDKDYFAS 189 (230)
Q Consensus 176 ~~~~~~~~~~~~~~ 189 (230)
..+.-.+|...|.+
T Consensus 150 ~~A~~~l~g~~~~g 163 (175)
T 1fje_B 150 EKNLEEKQGAEIDG 163 (175)
T ss_dssp HHHHHHHTEEEETT
T ss_pred HHHHHHhCCCEECC
Confidence 66655555555554
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=2.9e-16 Score=132.61 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcc--eEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc----e
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDI--EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN----R 91 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I--~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr----~ 91 (230)
.++++|||+|||+.+++++|+++|++||.| .+|+++.+. +..+|+|||+|.+.++|..|+..|||+.+.|. |
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 567899999999999999999999999999 899998775 55679999999999999999999999999997 6
Q ss_pred eEEEec
Q 026963 92 LKVSYA 97 (230)
Q Consensus 92 L~VsyA 97 (230)
+.|.||
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777776
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=3.8e-16 Score=127.36 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=71.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCC-cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-CceeEE
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKV 94 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG-~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr~L~V 94 (230)
..++.+|||+|||..+++++|+++|++|| +|.+|.++.+ .+|+|||+|.+.++|..|+..|||..+. |++|+|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 34688999999999999999999999999 9999999764 2799999999999999999999999999 999999
Q ss_pred EecC
Q 026963 95 SYAS 98 (230)
Q Consensus 95 syA~ 98 (230)
+||.
T Consensus 192 ~~a~ 195 (198)
T 1qm9_A 192 SFSK 195 (198)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 9994
No 197
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=2.8e-16 Score=138.29 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=70.5
Q ss_pred cCCCCeEEEcCCCCCC---------CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee
Q 026963 17 CDESRYLIVRNVPSLG---------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF 87 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~---------teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f 87 (230)
..++++|||+|||..+ ++++|+++|++||+|++|+++.+ +|||||+|.+.++|+.|++.|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467899999999877 69999999999999999999864 79999999999999999999999999
Q ss_pred ------------CCceeEEEecCC
Q 026963 88 ------------LGNRLKVSYASQ 99 (230)
Q Consensus 88 ------------~Gr~L~VsyA~e 99 (230)
.|++|.|.||.+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-
T ss_pred eccccccccccCCCCEEEEEEccC
Confidence 899999999953
No 198
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=7.9e-17 Score=130.20 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=65.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCC-----------cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee
Q 026963 19 ESRYLIVRNVPSLGCGDDLLKLFATYG-----------DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF 87 (230)
Q Consensus 19 eS~~LyV~NLP~~~teedL~~LFS~fG-----------~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f 87 (230)
++++|||+|||+.+++++|+++|++|| .|.++.+ +.++|||||+|.+.++|..|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 578999999999999999999999995 5555555 345799999999999999999 8999999
Q ss_pred CCceeEEEecCC
Q 026963 88 LGNRLKVSYASQ 99 (230)
Q Consensus 88 ~Gr~L~VsyA~e 99 (230)
.|++|+|.++..
T Consensus 76 ~g~~i~v~~~~~ 87 (198)
T 2yh0_A 76 QGQSLKIRRPHD 87 (198)
T ss_dssp TTEEEEEECCCC
T ss_pred cCceEEEeCCCC
Confidence 999999999854
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=8.6e-16 Score=132.34 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=74.6
Q ss_pred cCCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcC-ceeC---Ccee
Q 026963 17 CDESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDE-FVFL---GNRL 92 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG-~~f~---Gr~L 92 (230)
+.++.+|||+|||..+++++|+++|++||+|.+|.++.+ .+|.++|||||+|.+.++|..|+..||| ..+. |++|
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 456789999999999999999999999999999999999 6899999999999999999999999955 4444 9999
Q ss_pred EEEecCC
Q 026963 93 KVSYASQ 99 (230)
Q Consensus 93 ~VsyA~e 99 (230)
.|.++..
T Consensus 172 ~v~~~~~ 178 (261)
T 3sde_A 172 IVEPMEQ 178 (261)
T ss_dssp EEEECCC
T ss_pred EEeeccc
Confidence 9999953
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=1.5e-15 Score=128.22 Aligned_cols=76 Identities=22% Similarity=0.255 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCC-cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-CceeEEE
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL-GNRLKVS 95 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG-~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~-Gr~L~Vs 95 (230)
.++.+|||+|||..+++++|+++|++|| +|..|.++.+ .+|+|||+|.+.++|..|++.|||..|. |++|+|+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999999653 3689999999999999999999999999 9999999
Q ss_pred ecC
Q 026963 96 YAS 98 (230)
Q Consensus 96 yA~ 98 (230)
||.
T Consensus 224 ~a~ 226 (229)
T 2adc_A 224 FSK 226 (229)
T ss_dssp ECS
T ss_pred Eec
Confidence 994
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=1.8e-15 Score=130.30 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=95.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
.++++|||+|||+.+++++|.++|++||+|.+|.+..+ +|||||.|.+.++|..|+..|||..+.|++|.|.|+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34578999999999999999999999999999999754 699999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCC
Q 026963 98 SQFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNES 175 (230)
Q Consensus 98 ~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (230)
.+.. .+- .|+|..+++....+ |..+| .+.++.++... +...++ .+|..|....++
T Consensus 94 ~~~~------------------~l~v~nl~~~~t~~~l~~~F~~~G---~i~~v~i~~~~-~g~~~g-~afV~f~~~~~A 150 (261)
T 3sde_A 94 THGA------------------ALTVKNLSPVVSNELLEQAFSQFG---PVEKAVVVVDD-RGRATG-KGFVEFAAKPPA 150 (261)
T ss_dssp CCSS------------------EEEEESCCTTCCHHHHHHHHGGGS---CEEEEEEEEET-TSCEEE-EEEEEESSHHHH
T ss_pred ccCC------------------cccccCCCCCCCHHHHHHHHHhcC---CeEEEEeeeCC-CCCcCc-EEEEEeCCHHHH
Confidence 5311 111 35666665555555 66666 23233333321 223344 455555444444
Q ss_pred Cce
Q 026963 176 PIT 178 (230)
Q Consensus 176 ~~~ 178 (230)
..+
T Consensus 151 ~~A 153 (261)
T 3sde_A 151 RKA 153 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 202
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.56 E-value=9.4e-15 Score=114.67 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=67.7
Q ss_pred cCCCCeEEEcCCCCCC----------CHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce
Q 026963 17 CDESRYLIVRNVPSLG----------CGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV 86 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~~----------teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~ 86 (230)
+.+++.|.+.|+=... .++||++.|++||+|.+|.|.++. ++|+|||+|.+.++|..|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3578899999974322 126899999999999999997652 58999999999999999999999999
Q ss_pred eCCceeEEEecC
Q 026963 87 FLGNRLKVSYAS 98 (230)
Q Consensus 87 f~Gr~L~VsyA~ 98 (230)
|.|++|+|+|++
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999994
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.54 E-value=1.1e-14 Score=134.14 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=71.0
Q ss_pred eeeeccCCCCeEEEcC--CCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC-
Q 026963 12 RVYTVCDESRYLIVRN--VPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL- 88 (230)
Q Consensus 12 kvytv~~eS~~LyV~N--LP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~- 88 (230)
.|-....++++|||+| |+..+++++|+++|++||+|.+|.+.. +||||||+|++.++|+.|++.|||+.+.
T Consensus 10 ~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 10 GIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp TCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 4566678999999999 578899999999999999999988754 4799999999999999999999999994
Q ss_pred --Cc--eeEEEec
Q 026963 89 --GN--RLKVSYA 97 (230)
Q Consensus 89 --Gr--~L~VsyA 97 (230)
|+ +|.|+|+
T Consensus 84 ~~g~~~~ly~~~~ 96 (345)
T 3tht_A 84 DLGQKITLYLNFV 96 (345)
T ss_dssp TTSCEEECEEEEC
T ss_pred ccCCceEEEEEEe
Confidence 45 7999998
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.6e-14 Score=107.16 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=61.8
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCcee
Q 026963 20 SRYLIVRNVP-------SLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRL 92 (230)
Q Consensus 20 S~~LyV~NLP-------~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L 92 (230)
...|.|.-.+ ..+++++|+++|++||+|.+|.++ +.++|||||+|.+.++|..|++.++| +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4566665544 347899999999999999999998 36799999999999999999999665 689999
Q ss_pred EEEecC
Q 026963 93 KVSYAS 98 (230)
Q Consensus 93 ~VsyA~ 98 (230)
+|.||.
T Consensus 83 ~V~~a~ 88 (100)
T 2d9o_A 83 KISWLE 88 (100)
T ss_dssp EEECSS
T ss_pred EEEEcc
Confidence 999994
No 205
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.33 E-value=2.7e-12 Score=107.80 Aligned_cols=79 Identities=15% Similarity=0.236 Sum_probs=66.7
Q ss_pred CCeEEEcCCCC-----CCCHHHHHHhhccCCcceEEEeec----CCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCc
Q 026963 20 SRYLIVRNVPS-----LGCGDDLLKLFATYGDIEECKPMD----AEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN 90 (230)
Q Consensus 20 S~~LyV~NLP~-----~~teedL~~LFS~fG~I~~v~il~----d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr 90 (230)
+..+.+.|+-. ...+++|.+.|++||+|.++.|.. +.+++.++|++||+|.+.++|.+|++.|||..|.|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 44555555432 224588999999999999999984 445669999999999999999999999999999999
Q ss_pred eeEEEecC
Q 026963 91 RLKVSYAS 98 (230)
Q Consensus 91 ~L~VsyA~ 98 (230)
+|+|+|++
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999995
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.3e-10 Score=92.82 Aligned_cols=74 Identities=15% Similarity=0.109 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEcc-HhHHHHHHHHh--cCceeCCceeE
Q 026963 18 DESRYLIVRNVPSL-GCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRL-FSNARFAKRKL--DEFVFLGNRLK 93 (230)
Q Consensus 18 ~eS~~LyV~NLP~~-~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d-~edA~~A~~~L--nG~~f~Gr~L~ 93 (230)
..+..|||+|||+. ++.++|+++|++||+|..|.++.+.. .|||.|.+ .++|..|+++| +|..+.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45778999999999 99999999999999999999998854 49999999 89999999999 58899999999
Q ss_pred EEec
Q 026963 94 VSYA 97 (230)
Q Consensus 94 VsyA 97 (230)
+...
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9987
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=8.8e-11 Score=90.10 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=62.8
Q ss_pred cCCCCeEEEcCCCC----CCCH----HHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeC
Q 026963 17 CDESRYLIVRNVPS----LGCG----DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFL 88 (230)
Q Consensus 17 ~~eS~~LyV~NLP~----~~te----edL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~ 88 (230)
..+..||+|.-+|. ..-+ .+|.+.|++||+|..+++..|+ +||+|.+.++|..|+. |||..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 34667899888772 2223 6799999999999999999863 8999999999999998 9999999
Q ss_pred CceeEEEecC
Q 026963 89 GNRLKVSYAS 98 (230)
Q Consensus 89 Gr~L~VsyA~ 98 (230)
|+.|+|.++.
T Consensus 75 Gr~LkV~lkt 84 (91)
T 2dnr_A 75 NRTITIALKS 84 (91)
T ss_dssp TEEEEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999999984
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=6.6e-10 Score=85.87 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=62.5
Q ss_pred cCCCCeEEEcCCCCC-----CCH----HHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCcee
Q 026963 17 CDESRYLIVRNVPSL-----GCG----DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVF 87 (230)
Q Consensus 17 ~~eS~~LyV~NLP~~-----~te----edL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f 87 (230)
..+..||+|.-++.. .-+ .+|.+.|++||+|..+++..|+ +||+|.+.++|..|++ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 356789999998742 112 6699999999999999999873 9999999999999999 999999
Q ss_pred CCceeEEEec
Q 026963 88 LGNRLKVSYA 97 (230)
Q Consensus 88 ~Gr~L~VsyA 97 (230)
.|+.|+|.+-
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=7.4e-07 Score=70.99 Aligned_cols=71 Identities=13% Similarity=0.028 Sum_probs=66.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccC-----CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATY-----GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~f-----G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V 94 (230)
.++|-+-|||+.+++.-+..+..+| |+|.++.+..|. |=|+|+|.|...|-+|.=+|||.+|.|++|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 6789999999999999999999999 999999999885 34999999999999999999999999999999
Q ss_pred Ee
Q 026963 95 SY 96 (230)
Q Consensus 95 sy 96 (230)
.=
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 83
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.13 E-value=5.4e-06 Score=64.91 Aligned_cols=73 Identities=25% Similarity=0.240 Sum_probs=63.7
Q ss_pred CCeEEEcCCCCCC-CH----HHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963 20 SRYLIVRNVPSLG-CG----DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (230)
Q Consensus 20 S~~LyV~NLP~~~-te----edL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V 94 (230)
.++|+|.|||..+ .. +.+++||.+|+++.....++. ++ -.-|.|.++++|..|...|||..|.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FK-RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TT-EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ce-EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5689999998744 22 567999999999999998875 33 4799999999999999999999999999999
Q ss_pred EecC
Q 026963 95 SYAS 98 (230)
Q Consensus 95 syA~ 98 (230)
-||+
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9995
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.80 E-value=0.00016 Score=55.00 Aligned_cols=79 Identities=15% Similarity=0.279 Sum_probs=63.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCC--CCceeEEEEEEccHhHHHHHHHHhcCceeCCc-----eeE
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDC--DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-----RLK 93 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~t--gksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr-----~L~ 93 (230)
..|.||+||+..+++++.+.++.++++.-..-+....+ ...-.-|+|.|.+.+++..-.+.+||+.|.+. +-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 46899999999999999999999998766554443322 12346799999999999999999999999753 467
Q ss_pred EEecCC
Q 026963 94 VSYASQ 99 (230)
Q Consensus 94 VsyA~e 99 (230)
|+|||-
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 999974
No 212
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.24 E-value=0.00038 Score=54.24 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=44.5
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc
Q 026963 23 LIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD 83 (230)
Q Consensus 23 LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln 83 (230)
|+| +.|......||..||+.||.|. |.=+.| .-|||.|.+++.|..|+..+.
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEE-eCChhhhhHHHHHHHhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 555 9999999999999999999654 555665 369999999999999999875
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.24 E-value=0.00072 Score=52.57 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=45.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc
Q 026963 22 YLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD 83 (230)
Q Consensus 22 ~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln 83 (230)
.++| +.|......||..+|+.||.|. |.=+.| .-|||.|.+++.|..|++.+.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4556 9999999999999999999765 555555 369999999999999999874
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.19 E-value=0.0013 Score=52.37 Aligned_cols=69 Identities=23% Similarity=0.262 Sum_probs=56.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce-eEEEe
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR-LKVSY 96 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~-L~Vsy 96 (230)
...|.|.+.|+. ..+.+...|++||+|.+..... ...+-.|.|.+..+|++|+.. ||..|.|.. |-|..
T Consensus 24 ~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 24 DTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp GGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 578999999974 5788999999999999888621 236899999999999999987 999998654 44444
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.00 E-value=0.0018 Score=49.99 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=58.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCC--CCceeEEEEEEccHhHHHHHHHHhcCceeCCc-----ee
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDC--DPFTDVYFIKFRLFSNARFAKRKLDEFVFLGN-----RL 92 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~t--gksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr-----~L 92 (230)
|-.|.||.||+..|++++.+.++.+=++.-..-+....+ ...-.-|+|.|.+.++...-.+..||+.|.+. +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 557999999999999999888887655432222111111 11224699999999999999999999999764 56
Q ss_pred EEEecC
Q 026963 93 KVSYAS 98 (230)
Q Consensus 93 ~VsyA~ 98 (230)
.|+|||
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 799997
No 216
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.28 E-value=0.01 Score=46.40 Aligned_cols=35 Identities=6% Similarity=-0.145 Sum_probs=29.0
Q ss_pred EEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCc
Q 026963 49 ECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEF 85 (230)
Q Consensus 49 ~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~ 85 (230)
+++++.+. ..++|||||+|.+.++|+.|+..+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 45666664 479999999999999999999988754
No 217
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.24 E-value=0.0014 Score=51.40 Aligned_cols=39 Identities=8% Similarity=-0.079 Sum_probs=37.0
Q ss_pred CCceeEEEEEEccHhHHHHHHHHh-cCceeCCceeEEEecC
Q 026963 59 DPFTDVYFIKFRLFSNARFAKRKL-DEFVFLGNRLKVSYAS 98 (230)
Q Consensus 59 gksrG~AFV~F~d~edA~~A~~~L-nG~~f~Gr~L~VsyA~ 98 (230)
...+|+++|+|.+.++|+.|++.| ||..+.| ++.+.+|.
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 578999999999999999999999 9999999 99999984
No 218
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.17 E-value=0.018 Score=44.91 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=55.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcc-C----CcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEE
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFAT-Y----GDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKV 94 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~-f----G~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~V 94 (230)
..+|.|.|||+.+.++-|.-.|+. - |+|.++.... +-|+|+|.+.+.|++-++. .-+.|+|.+|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 468999999998888888889988 2 7888888753 4699999999999877654 246788889998
Q ss_pred Eec
Q 026963 95 SYA 97 (230)
Q Consensus 95 syA 97 (230)
.-.
T Consensus 79 ~P~ 81 (104)
T 2dhx_A 79 RPA 81 (104)
T ss_dssp EEC
T ss_pred EcC
Confidence 644
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.87 E-value=0.014 Score=47.33 Aligned_cols=78 Identities=19% Similarity=0.131 Sum_probs=55.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCcceE-EEeecCC--------CCCC-----ceeEEEEEEccHhHHHHHHHHhc
Q 026963 18 DESRYLIVRNVPSLGCGDDLLKLFATYGDIEE-CKPMDAE--------DCDP-----FTDVYFIKFRLFSNARFAKRKLD 83 (230)
Q Consensus 18 ~eS~~LyV~NLP~~~teedL~~LFS~fG~I~~-v~il~d~--------~tgk-----srG~AFV~F~d~edA~~A~~~Ln 83 (230)
+....+.|.+.|+ .....+.+.|++||.|.+ +.+..+. ...+ ...+-.|+|.+..+|.+|+. -|
T Consensus 5 ~~e~~VtVFGFp~-~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPE-TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCG-GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCH-HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 4456788999986 567888899999999986 2222100 0011 23577999999999999986 59
Q ss_pred CceeCCceeEEEec
Q 026963 84 EFVFLGNRLKVSYA 97 (230)
Q Consensus 84 G~~f~Gr~L~VsyA 97 (230)
|..|.|.-|-|...
T Consensus 83 G~ii~G~mIGV~Py 96 (132)
T 3p3d_A 83 GAVFNGVLLGVIPY 96 (132)
T ss_dssp TCEETTEECEEEEC
T ss_pred CeEeCcEEEEEEEC
Confidence 99999987777755
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.95 E-value=0.016 Score=55.23 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=41.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHH
Q 026963 20 SRYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRK 81 (230)
Q Consensus 20 S~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~ 81 (230)
-+.|+|. .|....+.+|.+.|++||+|.++..-++. | -||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 5789998 68889999999999999999999876543 2 6999999999999966544
No 221
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=94.71 E-value=0.0012 Score=61.78 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=74.5
Q ss_pred HHHHhhccCCcceEEEeecC----C-CCCCceeEE--EEEEccHhHHHHHHHHhcCceeCCceeEEEecCCCCChHHHHH
Q 026963 36 DLLKLFATYGDIEECKPMDA----E-DCDPFTDVY--FIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKD 108 (230)
Q Consensus 36 dL~~LFS~fG~I~~v~il~d----~-~tgksrG~A--FV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~Es~~d~r~ 108 (230)
+|..||.++|+|..|..+.. . .+....|++ |+.|....+|..++..++.....++. ..+
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~--------------~~~ 73 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERK--------------RRE 73 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHH--------------HHH
Confidence 58999999999998854432 1 233445555 88888777666555444332221110 011
Q ss_pred HHHHHHHHHHHHhh--------------------cCCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccc
Q 026963 109 KLETRRKEVLARLN--------------------SGRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQ 167 (230)
Q Consensus 109 Kl~~rr~ev~~Rl~--------------------~n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (230)
+.+.....+...++ .|++..+.+..... |..+| .+..+.++....+...++ .+|+
T Consensus 74 k~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G---~I~~v~i~~d~~tg~~kG-~aFV 149 (437)
T 3pgw_S 74 KIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYG---PIKRIHMVYSKRSGKPRG-YAFI 149 (437)
T ss_pred HHHHHHHHHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC---CeeEEEeeccCCCCCccc-eEEE
Confidence 11111111111111 23444444444333 55555 444455555555555666 6788
Q ss_pred cccccCCCCceeeccCccccccc
Q 026963 168 RISHVNESPITRVSSDKDYFASQ 190 (230)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~ 190 (230)
.|....++..+.-.+|...|.+.
T Consensus 150 ~F~~~e~A~~Ai~~lng~~i~gr 172 (437)
T 3pgw_S 150 EYEHERDMHSAYKHADGKKIDGR 172 (437)
T ss_pred eeccHHHHHHHHHHcCCCEECCE
Confidence 88888787777777777777654
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.78 E-value=0.84 Score=43.47 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=44.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhc
Q 026963 21 RYLIVRNVPSLGCGDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLD 83 (230)
Q Consensus 21 ~~LyV~NLP~~~teedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~Ln 83 (230)
..|+|+ +|..+...+|.++|+.||.| +|..+.+ -.|||.|.+.+.|..+++.++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 456666 88888889999999999965 5666655 369999999999999999986
No 223
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=77.81 E-value=0.038 Score=42.98 Aligned_cols=110 Identities=7% Similarity=-0.047 Sum_probs=38.2
Q ss_pred eEEEEEEccHhHHHHHHHHhcCceeCCceeEEEecCCCCChHHHHHHHHHHHHHHHHHhh-cCCCCCCCcccccc-cCCC
Q 026963 63 DVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYASQFESLADTKDKLETRRKEVLARLN-SGRSKVPNIHSSVD-LGEP 140 (230)
Q Consensus 63 G~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA~e~Es~~d~r~Kl~~rr~ev~~Rl~-~n~~~~~~~~~~~~-~~~~ 140 (230)
-++|++|+|...|..|+..|+|..-.|+. ...+..+.....+. .+|- .|+|..+.+.+..+ |..+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~~~~~~~------------~~l~V~nLp~~~te~~L~~~F~~~ 71 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPPPDVEGM------------TSLKVDNLTYRTSPDTLRRVFEKY 71 (135)
T ss_dssp -------------------------------CCSCCSCSSGGGC------------CCEEEECCCSSCHHHHHHHHHGGG
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCCCCCCCC------------CEEEEeCCCCCCCHHHHHHHHHhc
Confidence 36899999999999999999998877753 23343211111110 1111 35666665555544 5566
Q ss_pred CCCCCCCCCcchhhhhhhhcccccccccccccCCCCceeeccCcccccc
Q 026963 141 SLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRVSSDKDYFAS 189 (230)
Q Consensus 141 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (230)
| .+.++.++..+-+...++ .+|..|....++..+.-.+|...|.+
T Consensus 72 G---~i~~v~i~~~~~~g~~~G-~afV~F~~~~~A~~Ai~~l~g~~i~g 116 (135)
T 2lea_A 72 G---RVGDVYIPRDRYTKESRG-FAFVRFHDKRDAEDAMDAMDGAVLDG 116 (135)
T ss_dssp S---CCSEEECCCCSSSSSCCS-CCEEECSCHHHHHHHHTTTTTCCSSS
T ss_pred C---CEEEEEEEecCCCCccce-EEEEEECCHHHHHHHHHHcCCCEECC
Confidence 6 343444444444445566 56777766666665555555555544
No 224
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.84 E-value=0.83 Score=34.23 Aligned_cols=90 Identities=12% Similarity=0.134 Sum_probs=49.4
Q ss_pred CCCCCCCcccccc-cCCCCCCCCCCCCcchhhhhhhhcccccccccccccCCCCceeeccCcccccccCchhhHHHHHHH
Q 026963 124 GRSKVPNIHSSVD-LGEPSLVTAPLQPNLVSEQITSWQRASSESQRISHVNESPITRVSSDKDYFASQSMNQTVRLVREK 202 (230)
Q Consensus 124 n~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 202 (230)
|+|..+.+.+.++ |..+|. +.++..+...-+...++ .+|..|....++..+-- +|..+|.+.......-.-.+-
T Consensus 32 nLp~~~te~~l~~~F~~~G~---v~~~~~~~~~~~g~~~G-~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~ 106 (124)
T 1wel_A 32 GLPFEAENKHVIDFFKKLDI---VEDSIYIAYGPNGKATG-EGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKGM 106 (124)
T ss_dssp CCCTTCCHHHHHHHSCSSCB---CTTTCEEEECTTSSEEE-EEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHHH
T ss_pred CCCCCCCHHHHHHHHHhcCC---ccceEEEEECCCCCCCe-EEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHHH
Confidence 3444444444443 555663 33333333334555677 68888888888877766 888888876544322223344
Q ss_pred HhhhhcccccccCCCC
Q 026963 203 LNKIESSTEHLQAGPA 218 (230)
Q Consensus 203 ~~~~~~~~~~~~~~~~ 218 (230)
+++++..-..++.+|.
T Consensus 107 ~~~~~~~~~~~~~~p~ 122 (124)
T 1wel_A 107 LEKIDMIRKRLQSGPS 122 (124)
T ss_dssp HHHHHHHHHHHCCCSS
T ss_pred HHHHHHHhhhhccCCC
Confidence 4444444445555544
No 225
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=39.41 E-value=23 Score=34.30 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHhh----ccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHh
Q 026963 27 NVPSLGCGDDLLKLF----ATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKL 82 (230)
Q Consensus 27 NLP~~~teedL~~LF----S~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~L 82 (230)
..+...+.-||..|| +.+|-|+++.+-..+. ...+.++++.|.+.++|..|++.+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 345555566888887 4899999987755432 456778999999999999998865
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=36.07 E-value=73 Score=26.46 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=35.8
Q ss_pred CeEEEcCCCC-C--------CCHHHHHHhh--ccCCcceEEEeecCCCCCCceeEEEEEEccH
Q 026963 21 RYLIVRNVPS-L--------GCGDDLLKLF--ATYGDIEECKPMDAEDCDPFTDVYFIKFRLF 72 (230)
Q Consensus 21 ~~LyV~NLP~-~--------~teedL~~LF--S~fG~I~~v~il~d~~tgksrG~AFV~F~d~ 72 (230)
...+|-|+|. . ....+|.+.| +.|.++. |+.+.++ .-.+|+|.|.|.+-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCC
Confidence 3577889886 1 1237899977 9999987 5555554 34789999999983
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=35.06 E-value=65 Score=23.38 Aligned_cols=51 Identities=2% Similarity=-0.041 Sum_probs=35.4
Q ss_pred HHHHHhhccCC-cceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCce-eCCc
Q 026963 35 DDLLKLFATYG-DIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFV-FLGN 90 (230)
Q Consensus 35 edL~~LFS~fG-~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~-f~Gr 90 (230)
+.|......-| .|.++.++. .+.||-||++...++...+++.+.|.. |-|.
T Consensus 27 ~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV~gfvg~ 79 (92)
T 3lpe_A 27 GLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRVRGIVPG 79 (92)
T ss_dssp HHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTEEEECSS
T ss_pred HHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCceEeCCC
Confidence 34544433333 256666653 389999999999999999999888764 5554
No 228
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=34.44 E-value=31 Score=32.22 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=31.5
Q ss_pred HHHHhh--ccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHH
Q 026963 36 DLLKLF--ATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAK 79 (230)
Q Consensus 36 dL~~LF--S~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~ 79 (230)
+|..|| +.+|-|+++.+-..+. ......+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 567777 5899999988755432 445667899999988876643
No 229
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=32.37 E-value=52 Score=22.39 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=37.2
Q ss_pred CCHHHHHHhhccCCcc-----eEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCceeEEEec
Q 026963 32 GCGDDLLKLFATYGDI-----EECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNRLKVSYA 97 (230)
Q Consensus 32 ~teedL~~LFS~fG~I-----~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~L~VsyA 97 (230)
....+|...+..-|.| =.+.+.. .|.||.-... .|..+++.|++..+.|+.+.|..+
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 4456666655555544 3455543 3788887654 588999999999999999999877
No 230
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=33.53 E-value=13 Score=27.00 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=50.4
Q ss_pred CCCCCCCcccccc-cCCCCCCCCCCC--------CcchhhhhhhhcccccccccccccCCCCceeeccCcccccccCchh
Q 026963 124 GRSKVPNIHSSVD-LGEPSLVTAPLQ--------PNLVSEQITSWQRASSESQRISHVNESPITRVSSDKDYFASQSMNQ 194 (230)
Q Consensus 124 n~~~~~~~~~~~~-~~~~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (230)
|+|..+.+.+.++ |..+|. +.+ +.++.++-+...++ .+|..|....++..+.-.+|...|.+. ..
T Consensus 14 nLp~~~t~~~l~~~F~~~G~---i~~~~~~~~~~v~i~~~~~~g~~~g-~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l 87 (116)
T 2lcw_A 14 GLGENVTIESVADYFKQIGI---IKTNKKTGQPMINLYTDRETGKLKG-EATVSFDDPPSAKAAIDWFDGKEFSGN--PI 87 (116)
Confidence 6666666666655 677773 333 44445555556677 789999999999999888888888754 56
Q ss_pred hHHHHHHH
Q 026963 195 TVRLVREK 202 (230)
Q Consensus 195 ~v~~v~~~ 202 (230)
.|.+-+.+
T Consensus 88 ~V~~a~~~ 95 (116)
T 2lcw_A 88 KVSFATRR 95 (116)
Confidence 66666554
No 231
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=25.02 E-value=56 Score=23.05 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=16.0
Q ss_pred EEEeecCCCCCCceeEEEEEEcc
Q 026963 49 ECKPMDAEDCDPFTDVYFIKFRL 71 (230)
Q Consensus 49 ~v~il~d~~tgksrG~AFV~F~d 71 (230)
.++++.++. ..+.|++||.|+|
T Consensus 21 ~arlllnrR-ps~~G~~wiKyED 42 (62)
T 1igq_A 21 PARLILNRR-PPAEGYAWLKYED 42 (62)
T ss_dssp EEEECTTBC-CSSTTEEEEEETT
T ss_pred hhhhhhccC-CCcCceEEEEEec
Confidence 456666543 3468999999998
No 232
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=22.79 E-value=66 Score=28.35 Aligned_cols=63 Identities=19% Similarity=0.122 Sum_probs=42.5
Q ss_pred CCCeEEEcCCCCCCC----HHHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEccHhHHHHHHHHhcCceeCCce
Q 026963 19 ESRYLIVRNVPSLGC----GDDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFRLFSNARFAKRKLDEFVFLGNR 91 (230)
Q Consensus 19 eS~~LyV~NLP~~~t----eedL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~d~edA~~A~~~LnG~~f~Gr~ 91 (230)
+...-+|+|++.... ...+.++..+||+|..+.+. +.-+|...+++.|..++.. ++..|.+++
T Consensus 13 P~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---------~~~~vvv~~p~~~k~il~~-~~~~f~~rp 79 (494)
T 3swz_A 13 LLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---------TKTTVIVGHHQLAKEVLIK-KGKDFSGRP 79 (494)
T ss_dssp CBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---------TEEEEEECSHHHHHHHHTT-TTTTTBBCC
T ss_pred CCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---------CCCEEEECCHHHHHHHHHh-CcHhhCCCC
Confidence 334567888875422 36688899999999888764 2457777888888877644 344454443
No 233
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=21.54 E-value=18 Score=28.82 Aligned_cols=28 Identities=14% Similarity=0.041 Sum_probs=19.6
Q ss_pred HHHHHhhccCCcceEEEeecCCCCCCceeEEEEEEc
Q 026963 35 DDLLKLFATYGDIEECKPMDAEDCDPFTDVYFIKFR 70 (230)
Q Consensus 35 edL~~LFS~fG~I~~v~il~d~~tgksrG~AFV~F~ 70 (230)
+|+.+||...|.|+-... .+||+||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 567789999999987763 2589999976
Done!