BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026964
         (230 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
           Synthase (Thns) From Streptomyces Coelicolor A3(2): A
           Bacterial Type Iii Polyketide Synthase (Pks) Provides
           Insights Into Enzymatic Control Of Reactive Polyketide
           Intermediates
 pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
           Synthase (Thns) From Streptomyces Coelicolor A3(2): A
           Bacterial Type Iii Polyketide Synthase (Pks) Provides
           Insights Into Enzymatic Control Of Reactive Polyketide
           Intermediates
          Length = 382

 Score = 27.3 bits (59), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 143 LHSRVKRGRGAVGSRMDEAGPYLAPSADSNGKLSASYDV---WQHRVFGPEKPPSLKP 197
           + + V RGRG  G R++  G YL P  +        YDV     H +     P +++P
Sbjct: 200 IAAAVVRGRGGTGVRLERNGSYLIPKTED----WIMYDVKATGFHFLLDKRVPATMEP 253


>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
 pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
          Length = 1479

 Score = 26.9 bits (58), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 133 GLRDEEVEVFLHSRVKRGRGAVGSRMDEA 161
           GL  E++E+ LH  V+ G+ A+GS  D++
Sbjct: 455 GLTMEDMELILHPMVEDGKEAIGSMGDDS 483


>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
           Cryo-Electron Microscopy And Its Oligomerization
           Behavior In Solution: Functional Implications.
 pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
           Cryo-Electron Microscopy And Its Oligomerization
           Behavior In Solution: Functional Implications.
 pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
           Cryo-Electron Microscopy And Its Oligomerization
           Behavior In Solution: Functional Implications.
 pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
           Cryo-Electron Microscopy And Its Oligomerization
           Behavior In Solution: Functional Implications.
 pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
           Cryo-Electron Microscopy And Its Oligomerization
           Behavior In Solution: Functional Implications.
 pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
           Cryo-Electron Microscopy And Its Oligomerization
           Behavior In Solution: Functional Implications
          Length = 1472

 Score = 26.9 bits (58), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 133 GLRDEEVEVFLHSRVKRGRGAVGSRMDEA 161
           GL  E++E+ LH  V+ G+ A+GS  D++
Sbjct: 455 GLTMEDMELILHPMVEDGKEAIGSMGDDS 483


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.126    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,879,199
Number of Sequences: 62578
Number of extensions: 167578
Number of successful extensions: 253
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 7
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)