BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026964
         (230 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4FSU1|CYSG_PSYA2 Siroheme synthase OS=Psychrobacter arcticus (strain DSM 17307 /
           273-4) GN=cysG PE=3 SV=2
          Length = 549

 Score = 32.7 bits (73), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 65  EMWRVRQKELELNEKLKRRSKDRSSCSSHADIDNSSRSLTNKHVVDDNGATASSSKRECE 124
           + W  R  E ++++ +   +++ +     AD+DN++ S+T K   DDNG + +S+     
Sbjct: 177 QFWE-RAFEGKVSQLMFAGNENEALAQLQADLDNTAASITAKDATDDNGLSTASTSAPAI 235

Query: 125 SNHSSENEGLRDEEVEVFL 143
           +N   E    R+   EV++
Sbjct: 236 AN---EFTAARNTMGEVYI 251


>sp|Q10273|YD39_SCHPO Uncharacterized protein C13G7.09c OS=Schizosaccharomyces pombe
          (strain 972 / ATCC 24843) GN=SPAC13G7.09c PE=4 SV=1
          Length = 135

 Score = 32.3 bits (72), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 9  IAAILLKEAAELRQKAEKEGV-HVYLQQPKMRGRPNSRFLTATVLGVQQANRAV 61
          +A +L+ E+    +K  K  V H Y+++ K + RPN  FL   V  VQ  NR +
Sbjct: 14 VAKLLIHES----KKKNKSFVDHGYIEKEKTKLRPNKVFLNNMVRNVQSHNRGI 63


>sp|Q8BQM9|MD12L_MOUSE Mediator of RNA polymerase II transcription subunit 12-like protein
            OS=Mus musculus GN=Med12l PE=1 SV=2
          Length = 2157

 Score = 31.6 bits (70), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 9/112 (8%)

Query: 55   QQANRAVEMNEMWRVRQKELELNEKLKRRSKDRSSCSSHADIDNSSRSLTNKHV------ 108
            Q   R ++  E W +RQ  LEL   +K+  KD SS  S A+++N   ++    +      
Sbjct: 1309 QHIKRILQNLEQWTLRQSWLELQLMIKQCLKDPSS-GSVAEMNNLLDNIAKATIEVFQQS 1367

Query: 109  --VDDNGATASSSKRECESNHSSENEGLRDEEVEVFLHSRVKRGRGAVGSRM 158
              +++N + +  S     +  S +    R   ++ FL S  +RG   V   +
Sbjct: 1368 ADLNNNASNSGMSLFNPNTIGSVDPSSTRQNGIKTFLSSSERRGVWLVAPLI 1419


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.124    0.341 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,626,779
Number of Sequences: 539616
Number of extensions: 3369830
Number of successful extensions: 15176
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 14619
Number of HSP's gapped (non-prelim): 641
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)