Query 026964
Match_columns 230
No_of_seqs 29 out of 31
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 04:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a2p_A Selenoprotein M, SELM p 43.4 31 0.0011 27.8 4.7 40 132-171 75-117 (129)
2 1dbw_A Transcriptional regulat 39.8 19 0.00064 24.6 2.5 31 20-55 89-119 (126)
3 3to5_A CHEY homolog; alpha(5)b 39.1 15 0.0005 28.0 2.0 19 20-38 101-119 (134)
4 3gl9_A Response regulator; bet 35.1 19 0.00065 24.8 2.0 19 20-38 90-108 (122)
5 3m6m_D Sensory/regulatory prot 34.1 20 0.00067 25.5 2.0 19 20-38 104-122 (143)
6 3h1g_A Chemotaxis protein CHEY 33.6 21 0.00071 24.6 2.0 19 20-38 95-113 (129)
7 2qvg_A Two component response 31.5 8.6 0.00029 26.8 -0.4 20 20-39 103-122 (143)
8 1dcf_A ETR1 protein; beta-alph 30.8 25 0.00087 24.2 2.0 18 21-38 98-115 (136)
9 3f6p_A Transcriptional regulat 30.7 22 0.00074 24.3 1.6 18 21-38 88-105 (120)
10 3snk_A Response regulator CHEY 29.2 27 0.00093 24.2 2.0 19 20-38 101-119 (135)
11 2r25_B Osmosensing histidine p 29.0 27 0.00094 24.3 2.0 18 21-38 96-113 (133)
12 1tmy_A CHEY protein, TMY; chem 28.9 29 0.001 23.2 2.0 18 21-38 90-107 (120)
13 3eqz_A Response regulator; str 28.5 32 0.0011 23.3 2.2 20 19-38 92-111 (135)
14 3eod_A Protein HNR; response r 28.3 28 0.00097 23.7 1.9 17 21-37 94-110 (130)
15 1dz3_A Stage 0 sporulation pro 27.8 34 0.0012 23.4 2.2 30 20-54 91-120 (130)
16 3t6k_A Response regulator rece 27.7 29 0.00098 24.3 1.9 18 21-38 93-110 (136)
17 1zh2_A KDP operon transcriptio 27.7 30 0.001 23.0 1.9 18 21-38 87-104 (121)
18 3lua_A Response regulator rece 27.2 30 0.001 24.0 1.9 19 20-38 95-113 (140)
19 2pl1_A Transcriptional regulat 27.1 30 0.001 23.1 1.8 18 21-38 87-104 (121)
20 3hdv_A Response regulator; PSI 26.3 33 0.0011 23.6 2.0 19 20-38 95-113 (136)
21 3kto_A Response regulator rece 26.1 31 0.001 24.0 1.8 19 20-38 94-112 (136)
22 3hdg_A Uncharacterized protein 26.0 35 0.0012 23.4 2.1 19 20-38 93-111 (137)
23 2jk1_A HUPR, hydrogenase trans 25.5 1.6E+02 0.0056 20.1 5.5 24 27-55 94-117 (139)
24 4dad_A Putative pilus assembly 25.3 39 0.0013 23.6 2.2 19 20-38 109-127 (146)
25 2gkg_A Response regulator homo 24.8 32 0.0011 22.9 1.6 19 20-38 93-111 (127)
26 3kyj_B CHEY6 protein, putative 24.5 29 0.00098 24.3 1.4 19 21-39 104-122 (145)
27 1srr_A SPO0F, sporulation resp 24.1 36 0.0012 22.9 1.8 19 20-38 89-107 (124)
28 3heb_A Response regulator rece 23.5 38 0.0013 23.9 1.9 19 20-38 103-121 (152)
29 1mb3_A Cell division response 23.4 34 0.0012 22.9 1.5 17 21-37 90-106 (124)
30 3lte_A Response regulator; str 23.4 38 0.0013 23.0 1.8 18 21-38 94-111 (132)
31 3jte_A Response regulator rece 23.2 38 0.0013 23.5 1.8 19 20-38 91-109 (143)
32 1p6q_A CHEY2; chemotaxis, sign 23.2 39 0.0013 22.9 1.8 18 21-38 96-113 (129)
33 3cfy_A Putative LUXO repressor 23.0 41 0.0014 23.5 2.0 19 20-38 90-108 (137)
34 2a9o_A Response regulator; ess 22.7 43 0.0015 22.2 1.9 18 21-38 87-104 (120)
35 3kml_A Coat protein; permutant 22.7 25 0.00085 29.6 0.8 19 47-65 142-160 (161)
36 1jbe_A Chemotaxis protein CHEY 22.4 44 0.0015 22.6 2.0 19 20-38 93-111 (128)
37 3kht_A Response regulator; PSI 22.4 42 0.0014 23.3 1.9 18 20-37 95-112 (144)
38 1zgz_A Torcad operon transcrip 22.2 44 0.0015 22.3 1.9 18 21-38 88-105 (122)
39 3crn_A Response regulator rece 22.1 44 0.0015 23.0 2.0 29 21-54 90-118 (132)
40 1xhf_A DYE resistance, aerobic 22.0 44 0.0015 22.4 1.9 17 21-37 89-105 (123)
41 3b2n_A Uncharacterized protein 21.9 44 0.0015 23.1 1.9 31 20-55 91-121 (133)
42 3mm4_A Histidine kinase homolo 21.5 62 0.0021 24.9 2.9 30 19-55 165-194 (206)
43 2pln_A HP1043, response regula 21.0 48 0.0016 22.8 2.0 18 20-37 100-117 (137)
44 1k68_A Phytochrome response re 20.9 48 0.0016 22.4 1.9 19 20-38 99-117 (140)
45 3rqi_A Response regulator prot 20.8 46 0.0016 24.8 1.9 19 20-38 93-111 (184)
46 3cnb_A DNA-binding response re 20.1 52 0.0018 22.5 2.0 18 21-38 99-116 (143)
No 1
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=43.44 E-value=31 Score=27.82 Aligned_cols=40 Identities=10% Similarity=0.188 Sum_probs=30.0
Q ss_pred CCCChHHHHHHHhhh--ccCCCCCCCCCCC-CCCCCCCCCCCC
Q 026964 132 EGLRDEEVEVFLHSR--VKRGRGAVGSRMD-EAGPYLAPSADS 171 (230)
Q Consensus 132 ~GL~DdEieeFL~SR--vKRGRGAVGSRMD-EpGPYLp~~~~~ 171 (230)
+++.-|+|++||.++ ++++-.+.+-.-+ .-+||.|....+
T Consensus 75 ekw~~d~I~efL~e~GF~rk~~~~~~~p~e~~~~p~~~~~~~~ 117 (129)
T 2a2p_A 75 SQMTRDEINALVQELGFYRKSAPEAQVPPEYLWAPAKPPEEAS 117 (129)
T ss_dssp SSSCHHHHHHHHHHHTCCBCSSTTCCCCGGGSSTTSCCCSTTT
T ss_pred ccCCHHHHHHHHHHcCCccccccccCCCHHHHhCCCCCccCCc
Confidence 568899999999887 6777666665555 578998876443
No 2
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=39.76 E-value=19 Score=24.58 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=20.3
Q ss_pred HHHHHhhhcceeeccCCccCCCCCcchhhhhhhhHh
Q 026964 20 LRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLGVQ 55 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvrgVq 55 (230)
...++-+.|+..||.||.. ..-|..+|+.+.
T Consensus 89 ~~~~~~~~ga~~~l~Kp~~-----~~~l~~~i~~~~ 119 (126)
T 1dbw_A 89 MAVEAMKAGAVDFIEKPFE-----DTVIIEAIERAS 119 (126)
T ss_dssp HHHHHHHTTCSEEEESSCC-----HHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHheeCCCC-----HHHHHHHHHHHH
Confidence 3455668899999999953 334555555443
No 3
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=39.11 E-value=15 Score=28.00 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.2
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-+-|+.+||.||..
T Consensus 101 ~~~~~~~~Ga~~yl~KP~~ 119 (134)
T 3to5_A 101 QIIEAAQAGVNGYIVKPFT 119 (134)
T ss_dssp HHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHCCCCEEEECCCC
Confidence 3456778999999999963
No 4
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=35.05 E-value=19 Score=24.79 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=15.3
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-+-|+..||.||..
T Consensus 90 ~~~~~~~~Ga~~~l~KP~~ 108 (122)
T 3gl9_A 90 DESLALSLGARKVMRKPFS 108 (122)
T ss_dssp HHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHhcChhhhccCCCC
Confidence 4456778999999999963
No 5
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=34.08 E-value=20 Score=25.53 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=15.4
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++..-|+.+||.||..
T Consensus 104 ~~~~~~~~Ga~~~l~KP~~ 122 (143)
T 3m6m_D 104 AIRACEQAGARAFLAKPVV 122 (143)
T ss_dssp HHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHcChhheeeCCCC
Confidence 4456778899999999974
No 6
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=33.58 E-value=21 Score=24.65 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=15.1
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-+.||..||.||..
T Consensus 95 ~~~~~~~~g~~~~l~KP~~ 113 (129)
T 3h1g_A 95 EVITALKAGVNNYIVKPFT 113 (129)
T ss_dssp HHHHHHHHTCCEEEESCCC
T ss_pred HHHHHHHcCccEEEeCCCC
Confidence 3456778899999999963
No 7
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=31.47 E-value=8.6 Score=26.76 Aligned_cols=20 Identities=15% Similarity=-0.027 Sum_probs=15.8
Q ss_pred HHHHHhhhcceeeccCCccC
Q 026964 20 LRQKAEKEGVHVYLQQPKMR 39 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~vR 39 (230)
....+-+.||..||.||...
T Consensus 103 ~~~~~~~~g~~~~l~kP~~~ 122 (143)
T 2qvg_A 103 DKLAFESLNIRGHLIKPLDY 122 (143)
T ss_dssp HHHHHTTTTCCEEEESSCCH
T ss_pred HHHHHHhcCCCeEEECCCCH
Confidence 44567789999999999753
No 8
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=30.80 E-value=25 Score=24.24 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=14.4
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..++-+.|+..||.||..
T Consensus 98 ~~~~~~~ga~~~l~KP~~ 115 (136)
T 1dcf_A 98 KEKCMSFGLDGVLLKPVS 115 (136)
T ss_dssp HHHHHHTTCCEEEESSCC
T ss_pred HHHHHHcCCCeEEECCCC
Confidence 445667899999999963
No 9
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=30.72 E-value=22 Score=24.33 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=14.4
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..++-..|+.+||.||..
T Consensus 88 ~~~~~~~ga~~~l~KP~~ 105 (120)
T 3f6p_A 88 KVIGLEIGADDYVTKPFS 105 (120)
T ss_dssp HHHHHHTTCCEEEEESCC
T ss_pred HHHHHhCCcceeEcCCCC
Confidence 345668899999999964
No 10
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=29.21 E-value=27 Score=24.16 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=15.2
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-+.|+.+||.||..
T Consensus 101 ~~~~~~~~g~~~~l~KP~~ 119 (135)
T 3snk_A 101 QTRVLVRMNASDWLHKPLD 119 (135)
T ss_dssp HHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHcCcHhhccCCCC
Confidence 4456678999999999964
No 11
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=28.95 E-value=27 Score=24.35 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=14.6
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..++-+.|+..||.||..
T Consensus 96 ~~~~~~~ga~~~l~KP~~ 113 (133)
T 2r25_B 96 IKECLESGMNGFLSKPIK 113 (133)
T ss_dssp HHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCCCEEEeCCCC
Confidence 456678899999999964
No 12
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=28.94 E-value=29 Score=23.18 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=14.4
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..++-+.|+..||.||..
T Consensus 90 ~~~~~~~g~~~~l~KP~~ 107 (120)
T 1tmy_A 90 VIEAIKAGAKDFIVKPFQ 107 (120)
T ss_dssp HHHHHHTTCCEEEESSCC
T ss_pred HHHHHHhCcceeEeCCCC
Confidence 455668899999999964
No 13
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=28.52 E-value=32 Score=23.29 Aligned_cols=20 Identities=15% Similarity=-0.059 Sum_probs=15.3
Q ss_pred HHHHHHhhhcceeeccCCcc
Q 026964 19 ELRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 19 ~lr~~ae~eGV~AyL~kP~v 38 (230)
....++-.-||..||.||..
T Consensus 92 ~~~~~~~~~g~~~~l~KP~~ 111 (135)
T 3eqz_A 92 ETLALSCGLNVINTFTKPIN 111 (135)
T ss_dssp HHHHHHTTCEEEEEEESSCC
T ss_pred HHHHHHcCCCcceeeCCCCC
Confidence 33445678899999999974
No 14
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=28.28 E-value=28 Score=23.70 Aligned_cols=17 Identities=35% Similarity=0.321 Sum_probs=14.1
Q ss_pred HHHHhhhcceeeccCCc
Q 026964 21 RQKAEKEGVHVYLQQPK 37 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~ 37 (230)
..++-..|+.+||.||.
T Consensus 94 ~~~~~~~g~~~~l~KP~ 110 (130)
T 3eod_A 94 IAKALRLGVEDVLLKPV 110 (130)
T ss_dssp HHHHHHHCCSEEEESCC
T ss_pred HHHHHHcCCCEEEeCCC
Confidence 35566889999999996
No 15
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=27.78 E-value=34 Score=23.41 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=19.9
Q ss_pred HHHHHhhhcceeeccCCccCCCCCcchhhhhhhhH
Q 026964 20 LRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLGV 54 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvrgV 54 (230)
...++-+.|+..||.||... .-|..+|+.+
T Consensus 91 ~~~~~~~~ga~~~l~KP~~~-----~~l~~~i~~~ 120 (130)
T 1dz3_A 91 VTKKAVELGASYFILKPFDM-----ENLAHHIRQV 120 (130)
T ss_dssp HHHHHHHTTCEEEEECSSCC-----TTHHHHHHHH
T ss_pred HHHHHHHcCCCEEEeCCCCH-----HHHHHHHHHH
Confidence 34556688999999999643 2355555444
No 16
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=27.69 E-value=29 Score=24.35 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=14.5
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..++-+.|+..||.||..
T Consensus 93 ~~~~~~~ga~~~l~KP~~ 110 (136)
T 3t6k_A 93 KIAGFEAGANDYLAKPFE 110 (136)
T ss_dssp HHHHHHHTCSEEEETTCC
T ss_pred HHHHHhcCcceEEeCCCC
Confidence 456678899999999963
No 17
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=27.67 E-value=30 Score=22.96 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.2
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..++-+.|+..||.||..
T Consensus 87 ~~~~~~~g~~~~l~Kp~~ 104 (121)
T 1zh2_A 87 KIAALDAGADDYLSKPFG 104 (121)
T ss_dssp HHHHHHHTCSEEEESSCC
T ss_pred HHHHHhcCCCeEEeCCcC
Confidence 345667899999999963
No 18
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=27.17 E-value=30 Score=23.99 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=15.2
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-+.||..||.||..
T Consensus 95 ~~~~~~~~g~~~~l~KP~~ 113 (140)
T 3lua_A 95 YRHAALKFKVSDYILKPYP 113 (140)
T ss_dssp HHHHHHHSCCSEEEESSCC
T ss_pred HHHHHHHcCCCEEEECCCC
Confidence 4456678999999999964
No 19
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=27.11 E-value=30 Score=23.11 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=14.4
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..++-+.|+.+||.||..
T Consensus 87 ~~~~~~~g~~~~l~kp~~ 104 (121)
T 2pl1_A 87 KVEVLSAGADDYVTKPFH 104 (121)
T ss_dssp HHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCccceEECCCC
Confidence 355668899999999963
No 20
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=26.28 E-value=33 Score=23.56 Aligned_cols=19 Identities=21% Similarity=0.151 Sum_probs=15.0
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-..||..||.||..
T Consensus 95 ~~~~~~~~g~~~~l~KP~~ 113 (136)
T 3hdv_A 95 EAVDVMHLGVVDFLLKPVD 113 (136)
T ss_dssp HHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHhCCcceEEeCCCC
Confidence 3456678899999999964
No 21
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=26.13 E-value=31 Score=24.00 Aligned_cols=19 Identities=11% Similarity=0.302 Sum_probs=15.1
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-+.|+..||.||..
T Consensus 94 ~~~~~~~~ga~~~l~KP~~ 112 (136)
T 3kto_A 94 TAVRAMRASAADFIEKPFI 112 (136)
T ss_dssp HHHHHHHTTCSEEEESSBC
T ss_pred HHHHHHHcChHHheeCCCC
Confidence 3456678999999999964
No 22
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=26.01 E-value=35 Score=23.43 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=15.3
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-..||..||.||..
T Consensus 93 ~~~~~~~~g~~~~l~kP~~ 111 (137)
T 3hdg_A 93 YFIKAIELGVHLFLPKPIE 111 (137)
T ss_dssp HHHHHHHHCCSEECCSSCC
T ss_pred HHHHHHhCCcceeEcCCCC
Confidence 4456778999999999964
No 23
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=25.46 E-value=1.6e+02 Score=20.15 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=15.4
Q ss_pred hcceeeccCCccCCCCCcchhhhhhhhHh
Q 026964 27 EGVHVYLQQPKMRGRPNSRFLTATVLGVQ 55 (230)
Q Consensus 27 eGV~AyL~kP~vR~rPN~RFL~aTvrgVq 55 (230)
-|+..||.||.. ..-|.++|+.+.
T Consensus 94 ~ga~~~l~KP~~-----~~~L~~~i~~~~ 117 (139)
T 2jk1_A 94 AGIHQFLTKPWH-----PEQLLSSARNAA 117 (139)
T ss_dssp TTCCEEEESSCC-----HHHHHHHHHHHH
T ss_pred hchhhhccCCCC-----HHHHHHHHHHHH
Confidence 369999999963 334555554443
No 24
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=25.27 E-value=39 Score=23.58 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=15.1
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-+.||..||.||..
T Consensus 109 ~~~~~~~~ga~~~l~Kp~~ 127 (146)
T 4dad_A 109 TLLDAMRAGVRDVLRWPLE 127 (146)
T ss_dssp HHHHHHTTTEEEEEESSCC
T ss_pred HHHHHHHhCCceeEcCCCC
Confidence 4456678999999999963
No 25
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=24.78 E-value=32 Score=22.88 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=15.0
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-+.|+..||.||..
T Consensus 93 ~~~~~~~~g~~~~l~kp~~ 111 (127)
T 2gkg_A 93 AQHRKLKAHADEYVAKPVD 111 (127)
T ss_dssp HHHHHSTTCCSEEEESSCC
T ss_pred hHHHHHHhCcchheeCCCC
Confidence 3456678999999999963
No 26
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=24.53 E-value=29 Score=24.34 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.5
Q ss_pred HHHHhhhcceeeccCCccC
Q 026964 21 RQKAEKEGVHVYLQQPKMR 39 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~vR 39 (230)
..++-..||.+||.||...
T Consensus 104 ~~~~~~~ga~~~l~KP~~~ 122 (145)
T 3kyj_B 104 AARARELGADGVVAKPSGT 122 (145)
T ss_dssp HHHHHHTTCSCCCBCCCSC
T ss_pred HHHHHhCCCCEEEeCCCCH
Confidence 4567789999999999764
No 27
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=24.13 E-value=36 Score=22.94 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=14.9
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-..|+..||.||..
T Consensus 89 ~~~~~~~~g~~~~l~KP~~ 107 (124)
T 1srr_A 89 MIQESKELGALTHFAKPFD 107 (124)
T ss_dssp HHHHHHHHTCCCEEESSCC
T ss_pred HHHHHHhcChHhhccCCCC
Confidence 3456668899999999963
No 28
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=23.53 E-value=38 Score=23.87 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=14.9
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-..||..||.||..
T Consensus 103 ~~~~~~~~g~~~~l~KP~~ 121 (152)
T 3heb_A 103 EIQRCYDLGANVYITKPVN 121 (152)
T ss_dssp HHHHHHHTTCSEEEECCSS
T ss_pred HHHHHHHCCCcEEEeCCCC
Confidence 3456678899999999953
No 29
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=23.42 E-value=34 Score=22.91 Aligned_cols=17 Identities=18% Similarity=0.583 Sum_probs=13.5
Q ss_pred HHHHhhhcceeeccCCc
Q 026964 21 RQKAEKEGVHVYLQQPK 37 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~ 37 (230)
..++-+.|+..||.||.
T Consensus 90 ~~~~~~~g~~~~l~KP~ 106 (124)
T 1mb3_A 90 EERIREGGCEAYISKPI 106 (124)
T ss_dssp HHHHHHHTCSEEECSSC
T ss_pred HHHHHhCCCCEEEeCCC
Confidence 34556789999999995
No 30
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.41 E-value=38 Score=23.04 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=14.2
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..++-+.|+.+||.||..
T Consensus 94 ~~~~~~~g~~~~l~kP~~ 111 (132)
T 3lte_A 94 LQQAVTEGADDYLEKPFD 111 (132)
T ss_dssp HHHHHHHTCCEEECSSCC
T ss_pred HHHHHHhChHHHhhCCCC
Confidence 345667899999999964
No 31
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=23.24 E-value=38 Score=23.47 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=14.9
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-..||..||.||..
T Consensus 91 ~~~~~~~~g~~~~l~kp~~ 109 (143)
T 3jte_A 91 NAILAMKEGAFEYLRKPVT 109 (143)
T ss_dssp HHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHhCcceeEeCCCC
Confidence 3456778899999999953
No 32
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=23.17 E-value=39 Score=22.86 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=14.1
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..++-+.|+..||.||..
T Consensus 96 ~~~~~~~g~~~~l~KP~~ 113 (129)
T 1p6q_A 96 VQKAAALGANNVLAKPFT 113 (129)
T ss_dssp HHHHHHHTCSCEECCCSS
T ss_pred HHHHHHcCCCEEEECCCC
Confidence 345667899999999963
No 33
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=22.96 E-value=41 Score=23.54 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=14.7
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-+.|+.+||.||..
T Consensus 90 ~~~~~~~~ga~~~l~KP~~ 108 (137)
T 3cfy_A 90 LAVNLIQKGAEDFLEKPIN 108 (137)
T ss_dssp HHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHCCccEEEeCCCC
Confidence 3455667899999999963
No 34
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=22.69 E-value=43 Score=22.16 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=14.0
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..++-+.|+..||.||..
T Consensus 87 ~~~~~~~g~~~~l~Kp~~ 104 (120)
T 2a9o_A 87 KVIGLELGADDYVTKPFS 104 (120)
T ss_dssp HHHHHHHTCSEEEESSCC
T ss_pred HHHHHhCCHhheEeCCCC
Confidence 345567899999999963
No 35
>3kml_A Coat protein; permutant, TMV, TMVP, CPTMVP, acetylation, capsid protein, virion, viral protein; 3.01A {Tobacco mosaic virus}
Probab=22.69 E-value=25 Score=29.58 Aligned_cols=19 Identities=26% Similarity=0.379 Sum_probs=9.9
Q ss_pred hhhhhhhHhhhhhHHHHHH
Q 026964 47 LTATVLGVQQANRAVEMNE 65 (230)
Q Consensus 47 L~aTvrgVqqaNR~VE~~E 65 (230)
++|.+..++.=||++||++
T Consensus 142 ~~ALl~s~DTRNRiIEVen 160 (161)
T 3kml_A 142 VTALLGAFDTRNRIIEVEN 160 (161)
T ss_dssp HHHHHHHTCCCC-------
T ss_pred HHHHHhccccccceEecCC
Confidence 5677888888999999964
No 36
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=22.38 E-value=44 Score=22.56 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=14.8
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-+.|+..||.||..
T Consensus 93 ~~~~~~~~ga~~~l~KP~~ 111 (128)
T 1jbe_A 93 NIIAAAQAGASGYVVKPFT 111 (128)
T ss_dssp HHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHhCcCceeecCCC
Confidence 3445668899999999964
No 37
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=22.38 E-value=42 Score=23.33 Aligned_cols=18 Identities=6% Similarity=0.139 Sum_probs=14.6
Q ss_pred HHHHHhhhcceeeccCCc
Q 026964 20 LRQKAEKEGVHVYLQQPK 37 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~ 37 (230)
...++-..||.+||.||.
T Consensus 95 ~~~~~~~~ga~~~l~Kp~ 112 (144)
T 3kht_A 95 RAKQCMAAGASSVVDKSS 112 (144)
T ss_dssp HHHHHHHTTCSEEEECCT
T ss_pred HHHHHHHcCCCEEEECCC
Confidence 445667899999999996
No 38
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=22.19 E-value=44 Score=22.35 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=13.9
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..++-+.|+..||.||..
T Consensus 88 ~~~~~~~ga~~~l~Kp~~ 105 (122)
T 1zgz_A 88 RIVGLEMGADDYVTKPLE 105 (122)
T ss_dssp HHHHHHHTCSEEEESSCC
T ss_pred HHHHHHhCHHHHccCCCC
Confidence 345567899999999963
No 39
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=22.10 E-value=44 Score=23.03 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=18.9
Q ss_pred HHHHhhhcceeeccCCccCCCCCcchhhhhhhhH
Q 026964 21 RQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLGV 54 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvrgV 54 (230)
..++-+.|+.+||.||.. ..-|.++|+.+
T Consensus 90 ~~~~~~~ga~~~l~KP~~-----~~~L~~~i~~~ 118 (132)
T 3crn_A 90 SVFSLNAGADAYIMKPVN-----PRDLLEKIKEK 118 (132)
T ss_dssp HHHHHHTTCSEEEESSCC-----HHHHHHHHHHH
T ss_pred HHHHHhccchhhccCCCC-----HHHHHHHHHHH
Confidence 345667899999999963 33344445443
No 40
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=22.04 E-value=44 Score=22.36 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=13.6
Q ss_pred HHHHhhhcceeeccCCc
Q 026964 21 RQKAEKEGVHVYLQQPK 37 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~ 37 (230)
..++-+.|+..||.||.
T Consensus 89 ~~~~~~~g~~~~l~KP~ 105 (123)
T 1xhf_A 89 KILGLEIGADDYITKPF 105 (123)
T ss_dssp HHHHHHHTCSEEEESSC
T ss_pred HHHHHhcCcceEEeCCC
Confidence 34556789999999996
No 41
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=21.87 E-value=44 Score=23.07 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=19.7
Q ss_pred HHHHHhhhcceeeccCCccCCCCCcchhhhhhhhHh
Q 026964 20 LRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLGVQ 55 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvrgVq 55 (230)
...++-+.|+.+||.||.. ..-|..+|+.+.
T Consensus 91 ~~~~~~~~ga~~~l~Kp~~-----~~~L~~~i~~~~ 121 (133)
T 3b2n_A 91 YFEKAVVNDVDAYVLKERS-----IEELVETINKVN 121 (133)
T ss_dssp HHHHHHHTTCSEEEETTSC-----HHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEECCCC-----HHHHHHHHHHHH
Confidence 3445667899999999953 334445554443
No 42
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=21.53 E-value=62 Score=24.87 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=21.1
Q ss_pred HHHHHHhhhcceeeccCCccCCCCCcchhhhhhhhHh
Q 026964 19 ELRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLGVQ 55 (230)
Q Consensus 19 ~lr~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvrgVq 55 (230)
....++-..|+.+||.||.. -|..+|+.+-
T Consensus 165 ~~~~~~~~~Ga~~~l~KP~~-------~L~~~i~~~l 194 (206)
T 3mm4_A 165 EEARETIQAGMDAFLDKSLN-------QLANVIREIE 194 (206)
T ss_dssp HHHHHHHHHTCSEEEETTCT-------THHHHHHHHC
T ss_pred HHHHHHHhCCCCEEEcCcHH-------HHHHHHHHHH
Confidence 44556778999999999864 4555555544
No 43
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=20.99 E-value=48 Score=22.82 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.5
Q ss_pred HHHHHhhhcceeeccCCc
Q 026964 20 LRQKAEKEGVHVYLQQPK 37 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~ 37 (230)
...++-+.||..||.||.
T Consensus 100 ~~~~~~~~g~~~~l~kP~ 117 (137)
T 2pln_A 100 EEVHAFEQGADDYIAKPY 117 (137)
T ss_dssp HHHHHHHTTCSEEEESSC
T ss_pred HHHHHHHcCCceeeeCCC
Confidence 345666889999999995
No 44
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=20.90 E-value=48 Score=22.36 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=14.5
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...++-+.||..||.||..
T Consensus 99 ~~~~~~~~g~~~~l~kP~~ 117 (140)
T 1k68_A 99 DIFHSYDLHVNCYITKSAN 117 (140)
T ss_dssp HHHHHHHTTCSEEEECCSS
T ss_pred HHHHHHHhchhheecCCCC
Confidence 3445667899999999963
No 45
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=20.79 E-value=46 Score=24.82 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.0
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...+|-+.||.+||.||..
T Consensus 93 ~~~~a~~~Ga~~~l~KP~~ 111 (184)
T 3rqi_A 93 TAVQAVKDGADNYLAKPAN 111 (184)
T ss_dssp HHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHHhCHHHheeCCCC
Confidence 3456678899999999964
No 46
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.06 E-value=52 Score=22.46 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=14.2
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..++-+.|+..||.||..
T Consensus 99 ~~~~~~~g~~~~l~kP~~ 116 (143)
T 3cnb_A 99 VSRIVALGAETCFGKPLN 116 (143)
T ss_dssp HHHHHHTTCSEEEESSCC
T ss_pred HHHHHhcCCcEEEeCCCC
Confidence 345667899999999953
Done!