Query 026964
Match_columns 230
No_of_seqs 29 out of 31
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 04:14:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026964.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026964hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ny5a1 c.23.1.1 (A:1-137) Tra 63.4 4.2 0.00031 28.8 4.4 19 20-38 86-104 (137)
2 d1qkka_ c.23.1.1 (A:) Transcri 62.5 8.5 0.00062 27.3 6.0 29 20-53 86-114 (140)
3 d1k68a_ c.23.1.1 (A:) Response 50.7 5.2 0.00038 28.5 3.0 31 20-55 99-129 (140)
4 d1p6qa_ c.23.1.1 (A:) CheY pro 47.1 4 0.00029 28.6 1.8 31 19-54 94-124 (129)
5 d1peya_ c.23.1.1 (A:) Sporulat 45.3 4.6 0.00033 28.0 1.9 19 20-38 87-105 (119)
6 d1krwa_ c.23.1.1 (A:) NTRC rec 44.7 5.3 0.00038 27.8 2.1 19 20-38 89-107 (123)
7 d1p2fa2 c.23.1.1 (A:1-120) Res 43.0 5.3 0.00039 27.7 1.9 29 19-52 84-112 (120)
8 d2a9pa1 c.23.1.1 (A:2-118) DNA 41.9 5.7 0.00041 27.3 1.9 18 20-37 85-102 (117)
9 d1i3ca_ c.23.1.1 (A:) Response 41.6 5.6 0.00041 28.4 1.9 31 19-54 99-129 (144)
10 d1u0sy_ c.23.1.1 (Y:) CheY pro 41.2 6.2 0.00045 27.2 2.0 20 19-38 87-106 (118)
11 d1dz3a_ c.23.1.1 (A:) Sporulat 40.9 6.8 0.0005 27.1 2.2 19 20-38 90-108 (123)
12 d1dbwa_ c.23.1.1 (A:) Transcri 40.8 6.1 0.00045 27.5 2.0 19 20-38 89-107 (123)
13 d2r25b1 c.23.1.1 (B:1087-1214) 40.2 6.3 0.00046 27.8 2.0 20 19-38 93-112 (128)
14 d1jbea_ c.23.1.1 (A:) CheY pro 40.0 6.4 0.00047 27.4 2.0 18 20-37 93-110 (128)
15 d1kgsa2 c.23.1.1 (A:2-123) Pho 39.4 4.6 0.00034 27.9 1.1 29 19-52 86-114 (122)
16 d1zesa1 c.23.1.1 (A:3-123) Pho 38.7 6.8 0.0005 27.0 1.9 19 20-38 88-106 (121)
17 d2pl1a1 c.23.1.1 (A:1-119) Pho 38.3 7.1 0.00052 27.0 2.0 28 21-53 87-114 (119)
18 d1zgza1 c.23.1.1 (A:2-121) Tor 38.2 7.1 0.00051 26.7 1.9 18 20-37 86-103 (120)
19 d2ayxa1 c.23.1.1 (A:817-949) S 37.9 7.3 0.00053 27.4 2.0 19 20-38 94-112 (133)
20 d1mvoa_ c.23.1.1 (A:) PhoP rec 37.1 6.4 0.00046 27.1 1.5 17 21-37 89-105 (121)
21 d1mb3a_ c.23.1.1 (A:) Cell div 37.0 6.4 0.00047 27.0 1.5 19 20-38 89-107 (123)
22 d1a2oa1 c.23.1.1 (A:1-140) Met 36.3 22 0.0016 24.8 4.5 20 19-38 91-110 (140)
23 d1xhfa1 c.23.1.1 (A:2-122) Aer 36.1 7.9 0.00058 26.8 1.9 30 20-54 87-116 (121)
24 d1k66a_ c.23.1.1 (A:) Response 35.5 8 0.00058 27.7 1.9 19 20-38 106-124 (149)
25 d1zh2a1 c.23.1.1 (A:2-120) Tra 35.4 8.3 0.0006 26.5 1.9 18 21-38 86-103 (119)
26 d2a4ha1 c.47.1.23 (A:62-178) S 34.2 15 0.0011 27.5 3.3 28 132-159 72-99 (117)
27 d1dcfa_ c.23.1.2 (A:) Receiver 32.0 10 0.00076 26.6 2.0 30 20-54 97-126 (134)
28 d1w25a1 c.23.1.1 (A:2-140) Res 30.4 11 0.00077 26.6 1.8 18 21-38 90-107 (139)
29 d1yioa2 c.23.1.1 (A:3-130) Res 30.1 9.7 0.00071 26.3 1.5 18 21-38 89-106 (128)
30 d1qo0d_ c.23.1.3 (D:) Positive 29.5 50 0.0037 23.2 5.6 21 20-40 92-112 (189)
31 d1a04a2 c.23.1.1 (A:5-142) Nit 28.6 12 0.0009 26.1 1.9 18 21-38 91-108 (138)
32 d1ys7a2 c.23.1.1 (A:7-127) Tra 28.0 6.5 0.00047 27.3 0.3 16 23-38 90-105 (121)
33 d1w25a2 c.23.1.1 (A:141-293) R 26.7 14 0.0011 26.5 2.0 19 20-38 99-117 (153)
34 d2p06a1 a.204.1.3 (A:1-84) Hyp 20.2 44 0.0032 23.3 3.4 24 5-28 36-59 (84)
No 1
>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=63.40 E-value=4.2 Score=28.79 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=15.5
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...+|-+.||.+||.||..
T Consensus 86 ~~~~a~~~Ga~dyl~KP~~ 104 (137)
T d1ny5a1 86 TAVEAMKMGAYDFLTKPCM 104 (137)
T ss_dssp HHHHHHTTTCCEEEEESCC
T ss_pred HHHHHHHcCCCEEEeCCCC
Confidence 3456778999999999964
No 2
>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}
Probab=62.49 E-value=8.5 Score=27.28 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=19.4
Q ss_pred HHHHHhhhcceeeccCCccCCCCCcchhhhhhhh
Q 026964 20 LRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLG 53 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvrg 53 (230)
...+|-+.|+..||.||.. ..-|.++|+-
T Consensus 86 ~~~~a~~~Ga~dyl~KP~~-----~~~L~~~i~~ 114 (140)
T d1qkka_ 86 MAVQAIQDGAYDFIAKPFA-----ADRLVQSARR 114 (140)
T ss_dssp HHHHHHHTTCCEEEESSCC-----HHHHHHHHHH
T ss_pred HHHHHHHcCCCEeecCCCC-----HHHHHHHHHH
Confidence 3456678899999999953 2335555543
No 3
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}
Probab=50.67 E-value=5.2 Score=28.47 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=21.7
Q ss_pred HHHHHhhhcceeeccCCccCCCCCcchhhhhhhhHh
Q 026964 20 LRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLGVQ 55 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvrgVq 55 (230)
...+|-+-||.+||.||.. ..-|.++|+++.
T Consensus 99 ~~~~a~~~Ga~~yl~KP~~-----~~~L~~~i~~i~ 129 (140)
T d1k68a_ 99 DIFHSYDLHVNCYITKSAN-----LSQLFQIVKGIE 129 (140)
T ss_dssp HHHHHHHTTCSEEEECCSS-----HHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCC-----HHHHHHHHHHHH
Confidence 3466678899999999953 344556666653
No 4
>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}
Probab=47.10 E-value=4 Score=28.64 Aligned_cols=31 Identities=29% Similarity=0.282 Sum_probs=21.0
Q ss_pred HHHHHHhhhcceeeccCCccCCCCCcchhhhhhhhH
Q 026964 19 ELRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLGV 54 (230)
Q Consensus 19 ~lr~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvrgV 54 (230)
....+|..-|+.+||.||.. ..-|.+.|..|
T Consensus 94 ~~~~~a~~~G~~~~l~KP~~-----~~~L~~~i~~v 124 (129)
T d1p6qa_ 94 ALVQKAAALGANNVLAKPFT-----IEKMKAAIEAV 124 (129)
T ss_dssp HHHHHHHHHTCSCEECCCSS-----HHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCC-----HHHHHHHHHHH
Confidence 34567778999999999963 33444444443
No 5
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=45.26 E-value=4.6 Score=28.02 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=15.4
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...+|.+-|+.+||.||..
T Consensus 87 ~~~~a~~~Ga~~yl~KP~~ 105 (119)
T d1peya_ 87 MIQESKELGALTHFAKPFD 105 (119)
T ss_dssp HHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHCCCCEEEECCCC
Confidence 3456788999999999954
No 6
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=44.73 E-value=5.3 Score=27.75 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.4
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
.+.+|-+.|+.+||.||..
T Consensus 89 ~~~~a~~~Ga~dyl~KP~~ 107 (123)
T d1krwa_ 89 AAVSAYQQGAFDYLPKPFD 107 (123)
T ss_dssp HHHHHHHHTEEEECSSCCH
T ss_pred HHHHHHHcCCCeEEeCcCC
Confidence 3556778999999999963
No 7
>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=42.98 E-value=5.3 Score=27.70 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=20.0
Q ss_pred HHHHHHhhhcceeeccCCccCCCCCcchhhhhhh
Q 026964 19 ELRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVL 52 (230)
Q Consensus 19 ~lr~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvr 52 (230)
....+|-+.|+..||.||... .-|.++|+
T Consensus 84 ~~~~~a~~~Ga~dyl~KP~~~-----~~L~~~i~ 112 (120)
T d1p2fa2 84 ESVLKGFEAGADDYVTKPFNP-----EILLARVK 112 (120)
T ss_dssp HHHHHHHHHTCSEEEESSCCH-----HHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCCCH-----HHHHHHHH
Confidence 345667789999999999543 34555554
No 8
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=41.88 E-value=5.7 Score=27.34 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=14.8
Q ss_pred HHHHHhhhcceeeccCCc
Q 026964 20 LRQKAEKEGVHVYLQQPK 37 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~ 37 (230)
.+.+|-+.|+.+||.||.
T Consensus 85 ~~~~a~~~Ga~d~l~KP~ 102 (117)
T d2a9pa1 85 DKVIGLELGADDYVTKPF 102 (117)
T ss_dssp HHHHHHHHTCSEEEESSC
T ss_pred HHHHHHHcCCCEEEECCC
Confidence 345677899999999995
No 9
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}
Probab=41.60 E-value=5.6 Score=28.42 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=21.0
Q ss_pred HHHHHHhhhcceeeccCCccCCCCCcchhhhhhhhH
Q 026964 19 ELRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLGV 54 (230)
Q Consensus 19 ~lr~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvrgV 54 (230)
....+|-+-||.+||.||. +.--|.++|+.+
T Consensus 99 ~~~~~a~~~Ga~~yl~KP~-----~~~~L~~~i~~l 129 (144)
T d1i3ca_ 99 DDVIASYELHVNCYLTKSR-----NLKDLFKMVQGI 129 (144)
T ss_dssp HHHHHHHHTTCSEEEECCS-----SHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEECCC-----CHHHHHHHHHHH
Confidence 3456778899999999995 333444555444
No 10
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}
Probab=41.21 E-value=6.2 Score=27.25 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=16.0
Q ss_pred HHHHHHhhhcceeeccCCcc
Q 026964 19 ELRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 19 ~lr~~ae~eGV~AyL~kP~v 38 (230)
....+|-+.|+.+||.||..
T Consensus 87 ~~~~~a~~~Ga~~yl~KP~~ 106 (118)
T d1u0sy_ 87 AMVIEAIKAGAKDFIVKPFQ 106 (118)
T ss_dssp HHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHcCCCEEEECCCC
Confidence 34567778999999999964
No 11
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=40.89 E-value=6.8 Score=27.14 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.8
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...+|-+.||.+||.||..
T Consensus 90 ~~~~a~~~Ga~~~l~KP~~ 108 (123)
T d1dz3a_ 90 VTKKAVELGASYFILKPFD 108 (123)
T ss_dssp HHHHHHHTTCEEEEECSSC
T ss_pred HHHHHHHCCCCEEEECCCC
Confidence 4557789999999999964
No 12
>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}
Probab=40.76 E-value=6.1 Score=27.47 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.7
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...+|-+.|+..||.||..
T Consensus 89 ~~~~a~~~Ga~~yl~KP~~ 107 (123)
T d1dbwa_ 89 MAVEAMKAGAVDFIEKPFE 107 (123)
T ss_dssp HHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHCCCCEEEECCCC
Confidence 4557778999999999965
No 13
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.19 E-value=6.3 Score=27.76 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=16.5
Q ss_pred HHHHHHhhhcceeeccCCcc
Q 026964 19 ELRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 19 ~lr~~ae~eGV~AyL~kP~v 38 (230)
....+|-+-||.+||.||..
T Consensus 93 ~~~~~~~~~G~~~~l~KP~~ 112 (128)
T d2r25b1 93 SNIKECLESGMNGFLSKPIK 112 (128)
T ss_dssp HHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHHcCCCEEEECCCC
Confidence 45667788999999999964
No 14
>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}
Probab=39.96 E-value=6.4 Score=27.39 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.6
Q ss_pred HHHHHhhhcceeeccCCc
Q 026964 20 LRQKAEKEGVHVYLQQPK 37 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~ 37 (230)
...+|-..||.+||.||.
T Consensus 93 ~~~~a~~~G~~~~l~KP~ 110 (128)
T d1jbea_ 93 NIIAAAQAGASGYVVKPF 110 (128)
T ss_dssp HHHHHHHTTCSEEEESSC
T ss_pred HHHHHHHCCCCEEEECCC
Confidence 345667889999999995
No 15
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=39.44 E-value=4.6 Score=27.93 Aligned_cols=29 Identities=38% Similarity=0.353 Sum_probs=20.9
Q ss_pred HHHHHHhhhcceeeccCCccCCCCCcchhhhhhh
Q 026964 19 ELRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVL 52 (230)
Q Consensus 19 ~lr~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvr 52 (230)
..+.++-+.|+.+||.||.. ..-|.++|+
T Consensus 86 ~~~~~~~~~Ga~~yl~KP~~-----~~~L~~~i~ 114 (122)
T d1kgsa2 86 EYRVKGLNMGADDYLPKPFD-----LRELIARVR 114 (122)
T ss_dssp HHHHHTCCCCCSEEEESSCC-----HHHHHHHHH
T ss_pred HHHHHHHHcCCceeecCCCC-----HHHHHHHHH
Confidence 34667889999999999963 334556554
No 16
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}
Probab=38.72 E-value=6.8 Score=26.98 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=15.4
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
.+.+|-+.||.+||.||..
T Consensus 88 ~~~~~~~~G~~d~l~KP~~ 106 (121)
T d1zesa1 88 DRVRGLETGADDYITKPFS 106 (121)
T ss_dssp HHHHHHHHTCSEEEESSCC
T ss_pred HHHHHHHCCCCEEEECCCC
Confidence 4556778899999999964
No 17
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=38.32 E-value=7.1 Score=26.97 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=19.4
Q ss_pred HHHHhhhcceeeccCCccCCCCCcchhhhhhhh
Q 026964 21 RQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLG 53 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvrg 53 (230)
+.+|-+-|+..||.||.. ..-|-++|+.
T Consensus 87 ~~~a~~~Ga~~yl~KP~~-----~~~L~~~v~~ 114 (119)
T d2pl1a1 87 KVEVLSAGADDYVTKPFH-----IEEVMARMQA 114 (119)
T ss_dssp HHHHHHTTCSEEEESSCC-----HHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCC-----HHHHHHHHHH
Confidence 456778999999999953 3345555543
No 18
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.17 E-value=7.1 Score=26.69 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=14.6
Q ss_pred HHHHHhhhcceeeccCCc
Q 026964 20 LRQKAEKEGVHVYLQQPK 37 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~ 37 (230)
.+.+|-+-|+.+||.||.
T Consensus 86 ~~~~a~~~Ga~dyl~KP~ 103 (120)
T d1zgza1 86 DRIVGLEMGADDYVTKPL 103 (120)
T ss_dssp HHHHHHHHTCSEEEESSC
T ss_pred HHHHHHHCCCCEEEECCC
Confidence 345667789999999996
No 19
>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=37.87 E-value=7.3 Score=27.42 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=15.6
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
.+.+|-..||..||.||..
T Consensus 94 ~~~~~~~~G~~~~l~KP~~ 112 (133)
T d2ayxa1 94 EKQRCLESGMDSCLSKPVT 112 (133)
T ss_dssp HHHHHHHCCCEEEEESSCC
T ss_pred HHHHHHHcCCCEEEECCCC
Confidence 3567788999999999964
No 20
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=37.06 E-value=6.4 Score=27.06 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.1
Q ss_pred HHHHhhhcceeeccCCc
Q 026964 21 RQKAEKEGVHVYLQQPK 37 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~ 37 (230)
+.+|-+-|+.+||.||.
T Consensus 89 ~~~~~~~Ga~~yl~KP~ 105 (121)
T d1mvoa_ 89 KVLGLELGADDYMTKPF 105 (121)
T ss_dssp HHHHHHTTCCEEEESSC
T ss_pred HHHHHHCCCCEEEECCC
Confidence 34677889999999995
No 21
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=36.98 E-value=6.4 Score=27.03 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=15.3
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
.+.++..-||.+||.||..
T Consensus 89 ~~~~~~~~G~~~~l~KP~~ 107 (123)
T d1mb3a_ 89 DEERIREGGCEAYISKPIS 107 (123)
T ss_dssp CHHHHHHHTCSEEECSSCC
T ss_pred HHHHHHHcCCCEEEECCCC
Confidence 3456778899999999964
No 22
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=36.32 E-value=22 Score=24.76 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=16.1
Q ss_pred HHHHHHhhhcceeeccCCcc
Q 026964 19 ELRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 19 ~lr~~ae~eGV~AyL~kP~v 38 (230)
+...+|-+-|+..||.||..
T Consensus 91 ~~~~~al~~Ga~~yl~KP~~ 110 (140)
T d1a2oa1 91 EVTLRALELGAIDFVTKPQL 110 (140)
T ss_dssp HHHHHHHHHTCCEEEECSSS
T ss_pred HHHHHHHHcCCCEEEECCCC
Confidence 45566778999999999954
No 23
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.09 E-value=7.9 Score=26.79 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=20.8
Q ss_pred HHHHHhhhcceeeccCCccCCCCCcchhhhhhhhH
Q 026964 20 LRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLGV 54 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvrgV 54 (230)
.+.+|-+-|+.+||.||.. ..-|.++|+.+
T Consensus 87 ~~~~a~~~Ga~dyl~KP~~-----~~~L~~~v~~~ 116 (121)
T d1xhfa1 87 DKILGLEIGADDYITKPFN-----PRELTIRARNL 116 (121)
T ss_dssp HHHHHHHHTCSEEEESSCC-----HHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEeCCCC-----HHHHHHHHHHH
Confidence 3457779999999999963 33455555543
No 24
>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}
Probab=35.53 E-value=8 Score=27.72 Aligned_cols=19 Identities=11% Similarity=0.086 Sum_probs=15.4
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
.+.++-+-|+.+||.||..
T Consensus 106 ~~~~~~~~Ga~~~l~KP~~ 124 (149)
T d1k66a_ 106 DIEICYSYSISSYIVKPLE 124 (149)
T ss_dssp HHHHHHHTTCSEEEECCSS
T ss_pred HHHHHHHCCCCEEEECCCC
Confidence 3567778899999999964
No 25
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.38 E-value=8.3 Score=26.52 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.6
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..+|-+-|+.+||.||..
T Consensus 86 ~~~a~~~Ga~dyl~KP~~ 103 (119)
T d1zh2a1 86 KIAALDAGADDYLSKPFG 103 (119)
T ss_dssp HHHHHHHTCSEEEESSCC
T ss_pred HHHHHHcCCCEEEECCCC
Confidence 456678899999999963
No 26
>d2a4ha1 c.47.1.23 (A:62-178) Selenoprotein sep15 {Drosophila melanogaster [TaxId: 7227]}
Probab=34.23 E-value=15 Score=27.52 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=20.7
Q ss_pred CCCChHHHHHHHhhhccCCCCCCCCCCC
Q 026964 132 EGLRDEEVEVFLHSRVKRGRGAVGSRMD 159 (230)
Q Consensus 132 ~GL~DdEieeFL~SRvKRGRGAVGSRMD 159 (230)
+++.-|+|.+||++|+.+--+|-|+--+
T Consensus 72 ~kw~~D~i~efL~~~l~~~~~~~~~a~~ 99 (117)
T d2a4ha1 72 TKWNTDTVEEFFETHLAKDGAGKNSYSV 99 (117)
T ss_dssp SSSSCSHHHHHHHHHSCCCCSCCSCCCS
T ss_pred ccCCHHHHHHHHHHHHhhhccccccccc
Confidence 4677899999999999885555444433
No 27
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=32.01 E-value=10 Score=26.57 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=20.4
Q ss_pred HHHHHhhhcceeeccCCccCCCCCcchhhhhhhhH
Q 026964 20 LRQKAEKEGVHVYLQQPKMRGRPNSRFLTATVLGV 54 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~vR~rPN~RFL~aTvrgV 54 (230)
.+.++..-|+.+||.||.. ..-|..+|.-+
T Consensus 97 ~~~~~~~~G~~~~l~KP~~-----~~~L~~~l~~~ 126 (134)
T d1dcfa_ 97 TKEKCMSFGLDGVLLKPVS-----LDNIRDVLSDL 126 (134)
T ss_dssp HHHHHHHTTCCEEEESSCC-----HHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCCC-----HHHHHHHHHHH
Confidence 4567788999999999953 33455544433
No 28
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=30.40 E-value=11 Score=26.63 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=14.6
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
+.+|-+.|+.+||.||..
T Consensus 90 ~~~a~~~Ga~dyl~KP~~ 107 (139)
T d1w25a1 90 RIQGLESGASDFLTKPID 107 (139)
T ss_dssp HHHHHHHTCCEEEESSCC
T ss_pred HHHHHHcCCCEEEECCCC
Confidence 456678899999999963
No 29
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=30.06 E-value=9.7 Score=26.30 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=14.6
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
+.+|-+.|+..||.||..
T Consensus 89 ~~~a~~~Ga~dyl~KP~~ 106 (128)
T d1yioa2 89 TVRAMKAGAIEFLPKPFE 106 (128)
T ss_dssp CHHHHHTTEEEEEESSCC
T ss_pred HHHHHHCCCCEEEECCCC
Confidence 346678899999999964
No 30
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=29.53 E-value=50 Score=23.23 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=17.1
Q ss_pred HHHHHhhhcceeeccCCccCC
Q 026964 20 LRQKAEKEGVHVYLQQPKMRG 40 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~vR~ 40 (230)
...+|-+.|+..||.||....
T Consensus 92 ~~~~al~~Ga~~yL~KP~~~~ 112 (189)
T d1qo0d_ 92 VLSQIIELECHGVITQPLDAH 112 (189)
T ss_dssp HHHHHHHHTCSEEEESSCCGG
T ss_pred HHHHHHHcCCcEEEEecchhh
Confidence 456678899999999997654
No 31
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=28.63 E-value=12 Score=26.06 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=14.7
Q ss_pred HHHHhhhcceeeccCCcc
Q 026964 21 RQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 21 r~~ae~eGV~AyL~kP~v 38 (230)
..+|-+-|+.+||.||..
T Consensus 91 ~~~a~~~Ga~~yl~Kp~~ 108 (138)
T d1a04a2 91 VVTALKRGADGYLLKDME 108 (138)
T ss_dssp HHHHHHTTCSEEEETTCC
T ss_pred HHHHHHcCCCEEEECCCC
Confidence 446678899999999974
No 32
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=28.03 E-value=6.5 Score=27.33 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.4
Q ss_pred HHhhhcceeeccCCcc
Q 026964 23 KAEKEGVHVYLQQPKM 38 (230)
Q Consensus 23 ~ae~eGV~AyL~kP~v 38 (230)
+|-+-|+.+||.||..
T Consensus 90 ~a~~~Ga~dyl~KP~~ 105 (121)
T d1ys7a2 90 AGLEAGADDYLVKPFV 105 (121)
T ss_dssp TTTTTTCSEEEESSCC
T ss_pred HHHHCCCCEEEECCCC
Confidence 5667899999999954
No 33
>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=26.65 E-value=14 Score=26.51 Aligned_cols=19 Identities=32% Similarity=0.207 Sum_probs=15.2
Q ss_pred HHHHHhhhcceeeccCCcc
Q 026964 20 LRQKAEKEGVHVYLQQPKM 38 (230)
Q Consensus 20 lr~~ae~eGV~AyL~kP~v 38 (230)
...+|-+-|+..||.||..
T Consensus 99 ~~~~a~~~Ga~d~l~KP~~ 117 (153)
T d1w25a2 99 RMVKALEIGVNDILSRPID 117 (153)
T ss_dssp HHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHhcCcceEEECCCC
Confidence 4456778899999999954
No 34
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.21 E-value=44 Score=23.27 Aligned_cols=24 Identities=42% Similarity=0.625 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 026964 5 TENRIAAILLKEAAELRQKAEKEG 28 (230)
Q Consensus 5 TEnRlAalLl~EA~~lr~~ae~eG 28 (230)
.|.||-+-|.+|..+||+.++++.
T Consensus 36 seerllsrlfeemdelreaveked 59 (84)
T d2p06a1 36 SEERLLSRLFEEMDELREAVEKED 59 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999874
Done!