Query 026966
Match_columns 230
No_of_seqs 267 out of 1600
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cx6_A Hypothetical protein YH 13.4 1.2E+02 0.0042 21.3 2.6 25 63-87 20-44 (90)
2 2za4_B Barstar; protein-protei 12.0 1.4E+02 0.0049 20.7 2.6 25 63-87 20-44 (90)
3 2l2o_A UPF0727 protein C6ORF11 7.3 1.9E+02 0.0064 20.9 1.6 33 46-78 29-66 (89)
4 1ty4_C Egg laying defective EG 6.4 1.3E+02 0.0044 19.8 0.3 27 53-79 28-57 (57)
5 3arc_K Photosystem II reaction 4.6 4.9E+02 0.017 15.6 2.1 17 76-92 7-23 (37)
6 1hgv_A PH75 inovirus major coa 4.4 3E+02 0.01 17.0 1.0 16 202-217 8-23 (46)
7 2l76_A Nfatc2-interacting prot 4.0 3.1E+02 0.011 19.9 1.0 21 67-87 36-56 (95)
8 1nei_A Hypothetical protein YO 3.8 2.9E+02 0.01 18.4 0.7 15 201-215 37-51 (60)
9 1z0p_A Hypothetical protein SP 3.7 4.7E+02 0.016 18.3 1.8 17 213-229 26-42 (84)
10 2bnl_A Modulator protein RSBR; 2.9 3.8E+02 0.013 20.7 0.6 32 58-90 48-79 (136)
No 1
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=13.41 E-value=1.2e+02 Score=21.34 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=22.2
Q ss_pred HHHhhcCCCCCccchhhhHHHHHHH
Q 026966 63 WCARKFNQVSTFGAVLDMVTDRIST 87 (230)
Q Consensus 63 ~iAR~~nq~S~fGa~LD~vaDr~~~ 87 (230)
.+|+.++-..-+|+=||.+.|-++.
T Consensus 20 ~~~~~~~~p~~fG~NlDAL~D~Lt~ 44 (90)
T 2cx6_A 20 DFSQTFGLAKDKVRDLDSLWDVLMN 44 (90)
T ss_dssp HHHHHTTCCTTSCSSHHHHHHHHHT
T ss_pred HHHHHhCCchhhCCCHHHHHHHHcc
Confidence 5789999999999999999997763
No 2
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=11.99 E-value=1.4e+02 Score=20.73 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.5
Q ss_pred HHHhhcCCCCCccchhhhHHHHHHH
Q 026966 63 WCARKFNQVSTFGAVLDMVTDRIST 87 (230)
Q Consensus 63 ~iAR~~nq~S~fGa~LD~vaDr~~~ 87 (230)
.+++.++-..-+|+=+|.+.|-+..
T Consensus 20 ~l~~~l~~P~~fG~NlDAL~D~L~~ 44 (90)
T 2za4_B 20 TLKKELALPEYYGENLDALWAALTG 44 (90)
T ss_dssp HHHHHTTCCTTCCCSHHHHHHHHHH
T ss_pred HHHHHhCCCcccCCCHHHHHHHhcC
Confidence 5789999999999999999998776
No 3
>2l2o_A UPF0727 protein C6ORF115; HSPC280, winged helix, unknown function; NMR {Homo sapiens}
Probab=7.26 E-value=1.9e+02 Score=20.91 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=24.8
Q ss_pred HHHHHH---HHHHhhcchhhHH--HhhcCCCCCccchh
Q 026966 46 LFSVLY---FISFVCDAIDGWC--ARKFNQVSTFGAVL 78 (230)
Q Consensus 46 ~~~~l~---~ls~l~D~lDG~i--AR~~nq~S~fGa~L 78 (230)
.+..+| ..+-++|.+-|++ |||.+..+--|..|
T Consensus 29 ~FG~LF~dd~~~ni~e~LVGtL~~ArK~k~V~FeGEmL 66 (89)
T 2l2o_A 29 KFGVLFRDDKSANLFEALVGTLKAAKRRKIVTYPGELL 66 (89)
T ss_dssp EHHHHHHHHHHHCCCTTHHHHHHHHHHTTSEECSCSCC
T ss_pred EeeeeecchHHhhHHHHHHHHHHHHHhcCceeeccceE
Confidence 355666 7888999999986 77778777666654
No 4
>1ty4_C Egg laying defective EGL-1, programmed cell death activator; apoptosis, CED-9, BCL-2 family proteins, recognition; 2.20A {Caenorhabditis elegans}
Probab=6.39 E-value=1.3e+02 Score=19.80 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=10.6
Q ss_pred HHHhhcchhhHHH---hhcCCCCCccchhh
Q 026966 53 ISFVCDAIDGWCA---RKFNQVSTFGAVLD 79 (230)
Q Consensus 53 ls~l~D~lDG~iA---R~~nq~S~fGa~LD 79 (230)
++..+|-+|-.+- |+--..|-+|+++|
T Consensus 28 L~~MCDdFDaeMMSys~~~tsrSLl~r~~d 57 (57)
T 1ty4_C 28 LAAMCDDFDAQMMSYSAHASDRSLFHRLLD 57 (57)
T ss_dssp HHHHHHHHHHHHGGGSCCC-----------
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHhcC
Confidence 4667888887763 44344466777766
No 5
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=4.62 E-value=4.9e+02 Score=15.63 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=11.4
Q ss_pred chhhhHHHHHHHHHHHH
Q 026966 76 AVLDMVTDRISTASLLA 92 (230)
Q Consensus 76 a~LD~vaDr~~~~~ll~ 92 (230)
+.+||+.|..=.+.++.
T Consensus 7 a~f~PivDvmPiIPv~f 23 (37)
T 3arc_K 7 AIFDPLVDVLPVIPVLF 23 (37)
T ss_dssp GGGHHHHHHGGGHHHHH
T ss_pred hhhchHHHHhchHHHHH
Confidence 67889988765554443
No 6
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=4.37 E-value=3e+02 Score=16.98 Aligned_cols=16 Identities=44% Similarity=0.368 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 026966 202 AIKQVVNVIQMKTAAD 217 (230)
Q Consensus 202 ~~K~~in~~Ql~~a~~ 217 (230)
+.-|++|-+|.+.|+-
T Consensus 8 ia~~v~~yi~~iaaag 23 (46)
T 1hgv_A 8 VASQVTNYIQAIAAAG 23 (46)
T ss_dssp HHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc
Confidence 4456677777766653
No 7
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=3.96 E-value=3.1e+02 Score=19.88 Aligned_cols=21 Identities=10% Similarity=0.267 Sum_probs=17.3
Q ss_pred hcCCCCCccchhhhHHHHHHH
Q 026966 67 KFNQVSTFGAVLDMVTDRIST 87 (230)
Q Consensus 67 ~~nq~S~fGa~LD~vaDr~~~ 87 (230)
+.+..|+|.+.+|..|+|...
T Consensus 36 kIK~tt~l~KL~~aYc~r~gv 56 (95)
T 2l76_A 36 PLRMSEPLQSVVDHMATHLGV 56 (95)
T ss_dssp EECSSSCTHHHHHHHHHHHTS
T ss_pred EEecCChHHHHHHHHHhhcCC
Confidence 457789999999999998653
No 8
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=3.78 E-value=2.9e+02 Score=18.36 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q 026966 201 WAIKQVVNVIQMKTA 215 (230)
Q Consensus 201 ~~~K~~in~~Ql~~a 215 (230)
=++|.++|++..+++
T Consensus 37 ~~vK~LvniVrgYd~ 51 (60)
T 1nei_A 37 EVIKDLVNTVRSYDT 51 (60)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcccc
Confidence 478999999987765
No 9
>1z0p_A Hypothetical protein SPY1572; structural genomics, PSI, protein ST initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Streptococcus pyogenes} SCOP: a.2.18.1
Probab=3.72 E-value=4.7e+02 Score=18.30 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhhhhcC
Q 026966 213 KTAADVCVHYDIEKKQK 229 (230)
Q Consensus 213 ~~a~~~l~~~d~~~~~~ 229 (230)
..+|+.+++-|-.||+|
T Consensus 26 m~~s~kv~eED~derAk 42 (84)
T 1z0p_A 26 MATSQEVAQEDGDERAK 42 (84)
T ss_dssp HHHHHHHC----CHHHH
T ss_pred HHHHHHHHHhcccHHHH
Confidence 46889999999999864
No 10
>2bnl_A Modulator protein RSBR; stress-response, stress response, phosphorylation; 2.0A {Bacillus subtilis}
Probab=2.88 E-value=3.8e+02 Score=20.69 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=25.7
Q ss_pred cchhhHHHhhcCCCCCccchhhhHHHHHHHHHH
Q 026966 58 DAIDGWCARKFNQVSTFGAVLDMVTDRISTASL 90 (230)
Q Consensus 58 D~lDG~iAR~~nq~S~fGa~LD~vaDr~~~~~l 90 (230)
|.+|=-+++..+ .+.+.+.||.+++|+.-.+.
T Consensus 48 Efv~lils~i~~-~~~~~e~l~~Faer~VqlGw 79 (136)
T 2bnl_A 48 EYIDILLLSVKD-ENAAESQISELALRAVQIGL 79 (136)
T ss_dssp HHHHHHHTCSSC-TTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccc-chhHHHHHHHHHHHHHHcCC
Confidence 566667777777 89999999999999876553
Done!