Query 026966
Match_columns 230
No_of_seqs 267 out of 1600
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 04:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026966.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026966hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cx6a1 c.9.1.1 (A:1-90) Hypot 7.9 1.2E+02 0.0086 20.0 2.6 25 63-87 20-44 (90)
2 d1nekc_ f.21.2.2 (C:) Succinat 5.9 4E+02 0.029 17.8 5.8 27 1-27 1-28 (129)
3 d1ay7b_ c.9.1.1 (B:) Barstar ( 5.4 1.9E+02 0.014 18.7 2.6 24 63-86 19-42 (89)
4 d2axtk1 f.23.36.1 (K:10-46) Ph 4.9 1.9E+02 0.014 15.9 1.9 17 76-92 7-23 (37)
5 d1z0pa1 a.2.18.1 (A:1-77) Hypo 4.4 1.9E+02 0.014 18.4 1.8 17 213-229 26-42 (77)
6 d1gpma2 c.23.16.1 (A:3-207) GM 3.6 1.7E+02 0.012 20.9 1.2 25 139-164 69-93 (205)
7 d2a5yb1 a.4.5.80 (B:386-543) C 3.4 1.1E+02 0.0078 21.6 -0.1 27 53-79 34-60 (158)
8 d2asxa1 a.274.1.1 (A:278-331) 3.3 2.4E+02 0.018 15.7 1.6 19 209-227 7-25 (54)
9 d1mxaa1 d.130.1.1 (A:1-102) S- 3.1 2.6E+02 0.019 18.6 1.7 19 77-95 14-32 (102)
10 d2hxva1 c.71.1.2 (A:148-345) R 2.9 1.6E+02 0.012 21.3 0.4 16 60-75 11-26 (198)
No 1
>d2cx6a1 c.9.1.1 (A:1-90) Hypothetical protein YhcO {Escherichia coli [TaxId: 562]}
Probab=7.95 E-value=1.2e+02 Score=19.96 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=21.7
Q ss_pred HHHhhcCCCCCccchhhhHHHHHHH
Q 026966 63 WCARKFNQVSTFGAVLDMVTDRIST 87 (230)
Q Consensus 63 ~iAR~~nq~S~fGa~LD~vaDr~~~ 87 (230)
.+|++++-..-+|+=+|.+-|-++.
T Consensus 20 ~~~~~l~fp~~fG~NlDAl~D~lt~ 44 (90)
T d2cx6a1 20 DFSQTFGLAKDKVRDLDSLWDVLMN 44 (90)
T ss_dssp HHHHHTTCCTTSCSSHHHHHHHHHT
T ss_pred HHHHHcCCcchhCCCHHHHHHHHcc
Confidence 4689999999999999999997653
No 2
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=5.91 E-value=4e+02 Score=17.75 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=16.6
Q ss_pred CCCcccccCcccccCCcccc-hhhHHHH
Q 026966 1 MAKSSKKLTPRLRKLSVYLY-IPNIIGY 27 (230)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-iPN~IT~ 27 (230)
|.||.++++|...+-.++.. ++...++
T Consensus 1 m~~~~~~~RP~sPhL~iyk~~~t~~~SI 28 (129)
T d1nekc_ 1 MIRNVKKQRPVNLDLQTIRFPITAIASI 28 (129)
T ss_dssp CCTTCCCCCCBCCCGGGSCCCHHHHHHH
T ss_pred CchhcccCCCCCCCcceeCchHHHHHHH
Confidence 78887777777666666544 3333443
No 3
>d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=5.45 E-value=1.9e+02 Score=18.65 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=20.9
Q ss_pred HHHhhcCCCCCccchhhhHHHHHH
Q 026966 63 WCARKFNQVSTFGAVLDMVTDRIS 86 (230)
Q Consensus 63 ~iAR~~nq~S~fGa~LD~vaDr~~ 86 (230)
.++++++-..-+|.=+|.+-|-++
T Consensus 19 ~~~~~l~~p~~~G~N~DAl~D~lt 42 (89)
T d1ay7b_ 19 TLKKELALPEYYGENLDALWDCLT 42 (89)
T ss_dssp HHHHHTTCCTTCCSSHHHHHHHHH
T ss_pred HHHHHcCCCcccCCCHHHHHHHHc
Confidence 578899999999999999999544
No 4
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.88 E-value=1.9e+02 Score=15.88 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=11.1
Q ss_pred chhhhHHHHHHHHHHHH
Q 026966 76 AVLDMVTDRISTASLLA 92 (230)
Q Consensus 76 a~LD~vaDr~~~~~ll~ 92 (230)
+.+||+.|..-.+.++.
T Consensus 7 ~~f~PivdvlPiIPv~f 23 (37)
T d2axtk1 7 AIFDPLVDVLPVIPVLF 23 (37)
T ss_dssp GGCHHHHHHGGGHHHHH
T ss_pred hhhchHHHHhccHHHHH
Confidence 56788888765554433
No 5
>d1z0pa1 a.2.18.1 (A:1-77) Hypothetical protein SPy1572 {Streptococcus pyogenes [TaxId: 1314]}
Probab=4.35 E-value=1.9e+02 Score=18.42 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhhhhcC
Q 026966 213 KTAADVCVHYDIEKKQK 229 (230)
Q Consensus 213 ~~a~~~l~~~d~~~~~~ 229 (230)
..+|+.+++-|-.||++
T Consensus 26 m~~s~kv~eeD~derA~ 42 (77)
T d1z0pa1 26 MATSQEVAQEDGDERAK 42 (77)
T ss_dssp HHHHHHHC----CHHHH
T ss_pred HHHHHHHHHHcccHHHH
Confidence 56889999999998864
No 6
>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}
Probab=3.57 E-value=1.7e+02 Score=20.94 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=18.6
Q ss_pred cchhhhccCchHHHHHHHHHHHHHHH
Q 026966 139 WLFKAYYGNRIFMGYCCVACEVLYLI 164 (230)
Q Consensus 139 ~~~k~YY~~~~~l~~~~~~~e~f~v~ 164 (230)
..-+.+..++|+|+. |.|.|++...
T Consensus 69 ~~~~~~~~~~PiLGI-ClG~Qlla~~ 93 (205)
T d1gpma2 69 APQYVFEAGVPVFGV-CYGMQTMAMQ 93 (205)
T ss_dssp CCGGGGTSSSCEEEE-THHHHHHHHH
T ss_pred HHHHHHhCCCCEEEe-ccchhhhhhh
Confidence 344556668899998 8899998643
No 7
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=3.42 E-value=1.1e+02 Score=21.57 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=19.3
Q ss_pred HHHhhcchhhHHHhhcCCCCCccchhh
Q 026966 53 ISFVCDAIDGWCARKFNQVSTFGAVLD 79 (230)
Q Consensus 53 ls~l~D~lDG~iAR~~nq~S~fGa~LD 79 (230)
.+.=-|-+|..+|-+++.-|+-|+.|.
T Consensus 34 csnee~qlddevadrlkrlskrgalls 60 (158)
T d2a5yb1 34 CSNEEEQLDDEVADRLKRLSKRGALLS 60 (158)
T ss_dssp -----CCCTHHHHHHHHHTTTBSSCSE
T ss_pred cCChHhhhhHHHHHHHHHHHhccchhc
Confidence 345568899999999999999998763
No 8
>d2asxa1 a.274.1.1 (A:278-331) Hypothetical protein AF1503 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.33 E-value=2.4e+02 Score=15.73 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 026966 209 VIQMKTAADVCVHYDIEKK 227 (230)
Q Consensus 209 ~~Ql~~a~~~l~~~d~~~~ 227 (230)
+-++..+++++++-|...|
T Consensus 7 l~~l~~~~~~ia~Gdl~~~ 25 (54)
T d2asxa1 7 IIELSNTADKIAEGNLEAE 25 (54)
T ss_dssp HHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHCCCCCCc
Confidence 5678889999999888765
No 9
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=3.14 E-value=2.6e+02 Score=18.63 Aligned_cols=19 Identities=47% Similarity=0.476 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 026966 77 VLDMVTDRISTASLLAILS 95 (230)
Q Consensus 77 ~LD~vaDr~~~~~ll~~l~ 95 (230)
--|-+||+++...+=..|.
T Consensus 14 HPDKicDqISDaIlD~~L~ 32 (102)
T d1mxaa1 14 HPDKIADQISDAVLDAILE 32 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 3588889888887766664
No 10
>d2hxva1 c.71.1.2 (A:148-345) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]}
Probab=2.90 E-value=1.6e+02 Score=21.25 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=11.9
Q ss_pred hhhHHHhhcCCCCCcc
Q 026966 60 IDGWCARKFNQVSTFG 75 (230)
Q Consensus 60 lDG~iAR~~nq~S~fG 75 (230)
+||++|+.-+...-.+
T Consensus 11 lDG~ia~~~g~~~wit 26 (198)
T d2hxva1 11 LDGKIADHRGDSKWIT 26 (198)
T ss_dssp TTSEEECTTSCCTTSC
T ss_pred CCCCeECCCCCCCcCC
Confidence 7999998877654443
Done!