BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026967
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 94 QYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPX 153
Q K FVL+HG GAW WYK LE G TA+DL +GI+ + + T +YS+P
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 154 XXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQR---PFDVF 210
KV+L+GHS GG + A+E +P+KIS A+F+ A M PF+ +
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 128
Query: 211 AEE 213
E+
Sbjct: 129 NEK 131
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 94 QYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPX 153
Q K FVL+HG GAW WYK LE G TA+DL +GI+ + + T +YS+P
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 154 XXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQR---PFDVF 210
KV+L+GHS GG + A+E +P+KIS A+F+ A M PF+ +
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 128
Query: 211 AEE 213
E+
Sbjct: 129 NEK 131
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 94 QYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPX 153
Q K FVL+HG GAW WYK LE G TA+DL +GI+ + + T +YS+P
Sbjct: 9 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 68
Query: 154 XXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQR---PFDVF 210
KV+L+GHS GG + A+E +P+KIS A+F+ A M PF+ +
Sbjct: 69 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 128
Query: 211 AEE 213
E+
Sbjct: 129 NEK 131
>pdb|3STY|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
pdb|3STY|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
Length = 267
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 57/104 (54%)
Query: 96 KKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXX 155
K FVL+H GAWCWYK VA + G TALDL SGI+ + ++Y P
Sbjct: 13 KHFVLVHAAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLME 72
Query: 156 XXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATM 199
K+ILVGH+ GG +S A+E FP+KIS A+FL M
Sbjct: 73 FMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLM 116
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 94 QYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPX 153
Q K FVL+HG GAW WYK LE G TA+DL +GI+ + + T +YS+P
Sbjct: 3 QQKHFVLVHGGCLGAWIWYKLKPLLESAGHKVTAVDLSAAGINPRRLDEIHTFRDYSEPL 62
Query: 154 XXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQR---PFDVF 210
KV+L+GHS GG + A+E +P+KIS A+F+ A M PF+ +
Sbjct: 63 MEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKY 122
Query: 211 AEE 213
E+
Sbjct: 123 NEK 125
>pdb|3STT|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STT|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STU|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STU|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STV|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STV|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STW|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
pdb|3STW|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
Length = 267
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 57/104 (54%)
Query: 96 KKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXX 155
K FVL+H GAWCWYK VA + G TALDL SGI+ + ++Y P
Sbjct: 13 KHFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLME 72
Query: 156 XXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATM 199
K+ILVGH+ GG +S A+E FP+KIS A+FL M
Sbjct: 73 FMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLM 116
>pdb|3STX|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
pdb|3STX|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
Length = 267
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 57/104 (54%)
Query: 96 KKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXX 155
K FVL+H GAWCWYK VA + G TALDL SGI+ + ++Y P
Sbjct: 13 KHFVLVHTAFHGAWCWYKIVALMRSSGHNVTALDLGASGINPKQALQIPNFSDYLSPLME 72
Query: 156 XXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATM 199
K+ILVGH+ GG +S A+E FP+KIS A+FL M
Sbjct: 73 FMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLM 116
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 56/102 (54%)
Query: 96 KKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXX 155
K FVL+HG G W WYK LE G TALDL SG DL + TL +Y+ P
Sbjct: 5 KHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPLXE 64
Query: 156 XXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCA 197
KVILVGHS GG + A E +PQKI A+FL A
Sbjct: 65 LXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAA 106
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 56/102 (54%)
Query: 96 KKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXX 155
K FVL+HG G W WYK LE G TALDL SG DL + TL +Y+ P
Sbjct: 5 KHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASGTDLRKIEELRTLYDYTLPLXE 64
Query: 156 XXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCA 197
KVILVGHS GG + A E +PQKI A+FL A
Sbjct: 65 LXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAA 106
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 55/109 (50%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVL+H GAW WYK LE G TA++L SGID +V T+ EYSKP
Sbjct: 7 FVLVHNAYHGAWIWYKLKPLLESAGHRVTAVELAASGIDPRPIQAVETVDEYSKPLIETL 66
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIFLCATMVSDGQRP 206
+VILVG S GG ++ A + FP KI +FL A + P
Sbjct: 67 KSLPENEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVP 115
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 54/102 (52%)
Query: 93 IQYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKP 152
+ + FVLIH GAW W+K LE +G TALDL SG+D + + EYS+P
Sbjct: 1 MAFAHFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEP 60
Query: 153 XXXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIF 194
KVILVG S GG ++ A + + +KI+ A+F
Sbjct: 61 LLTFLEALPPGEKVILVGESCGGLNIAIAADKYXEKIAAAVF 102
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 54/102 (52%)
Query: 93 IQYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKP 152
+ + FVLIH GAW W+K LE +G TALDL SG+D + + EYS+P
Sbjct: 1 MAFAHFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEP 60
Query: 153 XXXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIF 194
KVILVG S GG ++ A + + +KI+ A+F
Sbjct: 61 LLTFLEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVF 102
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 54/102 (52%)
Query: 93 IQYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKP 152
+ + FVLIH GAW W+K LE +G TALDL SG+D + + EYS+P
Sbjct: 1 MAFAHFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEP 60
Query: 153 XXXXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIF 194
KVILVG S GG ++ A + + +KI+ A+F
Sbjct: 61 LLTFLEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVF 102
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 53/100 (53%)
Query: 95 YKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXX 154
+ FVLIH GAW W+K LE +G TALDL SG+D + + EYS+P
Sbjct: 2 FAHFVLIHTICHGAWIWHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGSFDEYSEPLL 61
Query: 155 XXXXXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIF 194
KVILVG S GG ++ A + + +KI+ A+F
Sbjct: 62 TFLEALPPGEKVILVGESCGGLNIAIAADKYCEKIAAAVF 101
>pdb|1DWQ|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWQ|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
Length = 262
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVLIH GAW W+K +LE G TALD+ SGID + + EYS+P
Sbjct: 10 FVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFL 69
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIF 194
KVI+VG S G ++ A + + KI+ +F
Sbjct: 70 EKLPQGEKVIIVGESXAGLNIAIAADRYVDKIAAGVF 106
>pdb|1EB8|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB8|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|A Chain A, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
pdb|1EB9|B Chain B, Structure Determinants Of Substrate Specificity Of
Hydroxynitrile Lyase From Manihot Esculenta
Length = 262
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVLIH GAW W+K +LE G TALD+ SGID + + EYS+P
Sbjct: 10 FVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFL 69
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIF 194
KVI+VG S G ++ A + + KI+ +F
Sbjct: 70 EKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVF 106
>pdb|1DWO|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWO|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Substrates Acetone And
Chloroacetone:implications For The Mechanism Of
Cyanogenesis
pdb|1DWP|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
pdb|1DWP|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Manihot
Esculenta At 2.2 Angstrom Resolution
Length = 262
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVLIH GAW W+K +LE G TALD+ SGID + + EYS+P
Sbjct: 10 FVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFL 69
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIF 194
KVI+VG S G ++ A + + KI+ +F
Sbjct: 70 EKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVF 106
>pdb|3RKS|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
pdb|3RKS|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) K176p Mutant
Length = 258
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVLIH GAW W+K +LE G TALD+ SGID + + EYS+P
Sbjct: 6 FVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFL 65
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIF 194
KVI+VG S G ++ A + + KI+ +F
Sbjct: 66 EKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVF 102
>pdb|3RKT|A Chain A, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|B Chain B, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|C Chain C, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|D Chain D, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|E Chain E, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|F Chain F, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|G Chain G, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
pdb|3RKT|H Chain H, Crystal Structure Of The Manihot Esculenta Hydroxynitrile
Lyase (Mehnl) 3kp Triple Mutant
Length = 258
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVLIH GAW W+K +LE G TALD+ SGID + + EYS+P
Sbjct: 6 FVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFL 65
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIF 194
KVI+VG S G ++ A + + KI+ +F
Sbjct: 66 EKLPQGEKVIIVGESCAGLNIAIAADRYVDKIAAGVF 102
>pdb|1E89|A Chain A, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E89|B Chain B, On The Mechanism Of Cyanogenesis Catalyzed By
Hydroxynitrile Lyase From Manihot Esculenta. Crystal
Structure Of Active Site Mutant Ser80ala In Complex With
Acetone Cyanohydrin
pdb|1E8D|A Chain A, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
pdb|1E8D|B Chain B, Mechanistic Aspects Of Cyanogenesis From Active Site
Mutant Ser80ala Of Hydroxynitrile Lyase From Manihot
Esculenta In Complex With Acetone Cyanohydrin
Length = 262
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%)
Query: 98 FVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXX 157
FVLIH GAW W+K +LE G TALD+ SGID + + EYS+P
Sbjct: 10 FVLIHTICHGAWIWHKLKPALERAGHKVTALDMAASGIDPRQIEQINSFDEYSEPLLTFL 69
Query: 158 XXXXXXXKVILVGHSSGGACVSYALEHFPQKISKAIF 194
KVI+VG + G ++ A + + KI+ +F
Sbjct: 70 EKLPQGEKVIIVGEACAGLNIAIAADRYVDKIAAGVF 106
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 99 VLIHGEGFGAWCWYKTVASLEEVG--LIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXX 156
+ +HG ++ W V +E V +IP DL G G N L ++ K
Sbjct: 48 IFLHGNATSSYLWRHVVPHIEPVARCIIP---DLIGMGKSGKSGNGSYRLLDHYKYLTAW 104
Query: 157 XXXXXXXXKVILVGHSSGGA-CVSYALEHFPQKISKAIFLCATMVS 201
K+I VGH G A YA EH Q KAI ++V
Sbjct: 105 FELLNLPKKIIFVGHDWGAALAFHYAYEH--QDRIKAIVHMESVVD 148
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 99 VLIHGEGFGAWCWYKTVASLEEVG--LIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXX 156
+ +HG ++ W V +E V +IP DL G G N L ++ K
Sbjct: 47 IFLHGNATSSYLWRHVVPHIEPVARCIIP---DLIGMGKSGKSGNGSYRLLDHYKYLTAW 103
Query: 157 XXXXXXXXKVILVGHSSGGA-CVSYALEHFPQKISKAIFLCATMVS 201
K+I VGH G A YA EH Q KAI ++V
Sbjct: 104 FELLNLPKKIIFVGHDWGAALAFHYAYEH--QDRIKAIVHMESVVD 147
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 99 VLIHGEGFGAWCWYKTVASLEEVG--LIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXX 156
+ +HG ++ W V +E V +IP DL G G N L ++ K
Sbjct: 47 IFLHGNATSSYLWRHVVPHIEPVARCIIP---DLIGMGKSGKSGNGSYRLLDHYKYLTAW 103
Query: 157 XXXXXXXXKVILVGHSSGGA-CVSYALEHFPQKISKAIFLCATMVS 201
K+I VGH G A YA EH Q KAI ++V
Sbjct: 104 FELLNLPKKIIFVGHDWGAALAFHYAYEH--QDRIKAIVHMESVVD 147
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 99 VLIHGEGFGAWCWYKTVASLEEVG--LIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXX 156
+ +HG ++ W V +E V +IP DL G G N L ++ K
Sbjct: 48 IFLHGNATSSYLWRHVVPHIEPVARCIIP---DLIGMGKSGKSGNGSYRLLDHYKYLTAW 104
Query: 157 XXXXXXXXKVILVGHSSGGA-CVSYALEHFPQKISKAIFLCATMVS 201
K+I VGH G A YA EH Q KAI ++V
Sbjct: 105 FELLNLPKKIIFVGHDWGAALAFHYAYEH--QDRIKAIVHMESVVD 148
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 99 VLIHGEGFGAWCWY---KTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXX 155
VL+HG G GA W + + L E G LD G G S NS + ++ +
Sbjct: 40 VLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNS-GSRSDLNARILK 98
Query: 156 XXXXXXXXXKVILVGHSSGG-ACVSYALEHFPQKISKAIFL 195
K+ L+G+S GG + V++ L+ +P+++ K + +
Sbjct: 99 SVVDQLDIAKIHLLGNSMGGHSSVAFTLK-WPERVGKLVLM 138
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 100 LIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXXXX 159
L HG + W + +L + G A+D+KG G ++++ + EY
Sbjct: 263 LCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG----ESSAPPEIEEYCMEVLCKEMV 318
Query: 160 XXX----XXKVILVGHSSGGACVSYALEHFPQKI 189
+ + +GH GG V Y +P+++
Sbjct: 319 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERV 352
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 100 LIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPXXXXXXX 159
L HG + W + +L + G A+D+KG G ++++ + EY
Sbjct: 44 LCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG----ESSAPPEIEEYCMEVLCKEMV 99
Query: 160 XXXX----XKVILVGHSSGGACVSYALEHFPQKI 189
+ + +GH GG V Y +P+++
Sbjct: 100 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERV 133
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 100 LIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSKPX----XX 155
L HG + W + +L + G A+D+KG G ++++ + EY
Sbjct: 59 LCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYG----ESSAPPEIEEYCMEVLCKEMV 114
Query: 156 XXXXXXXXXKVILVGHSSGGACVSYALEHFPQKI 189
+ + +GH GG V Y +P+++
Sbjct: 115 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERV 148
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 100 LIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSK----PXXX 155
L HG + W + +L + G A+D+KG G D++S + EY+
Sbjct: 261 LCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGYG----DSSSPPEIEEYAMELLCKEMV 316
Query: 156 XXXXXXXXXKVILVGHSSGGACVSYALEHFPQKI 189
+ + +GH G V +P+++
Sbjct: 317 TFLDKLGIPQAVFIGHDWAGVMVWNMALFYPERV 350
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 167 ILVGHSSGGA-CVSYALEHFPQKISKAIFLCAT---MVSDGQRP-------FDVFAEEVC 215
+ VGHS+GG V Y H K++KA+ + A MV P FD F +V
Sbjct: 92 VHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVFDGFQAQVA 151
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 165 KVILVGHSSGGACVSYALEHFPQKISKAIFL--CATMVSD 202
+ LVGHS GG S +P I K + L AT+ D
Sbjct: 120 NIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATLKGD 159
>pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of
Vancomycin-Resistant Leuconostoc Mesenteroides
Length = 377
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 93 IQYKKFVLIHGEGFGAWCWYKTVASLEEVGLIPTALDLKGSGIDLSDTNSVTTLAEYSK 151
I+ K++++ E W W K VA L + + A +GS + +S VT EY++
Sbjct: 148 IRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAA--NQGSSVGIS---RVTNAEEYTE 201
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 165 KVILVGHSSGGACVSYALEHFPQKISKAIFL--CATMVSD 202
+ LVGH+ GG S +P I K + L AT+ D
Sbjct: 120 NIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGD 159
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 165 KVILVGHSSGGACVSYALEHFPQKISKAIFL--CATMVSD 202
+ LVGH+ GG S +P I K + L AT+ D
Sbjct: 120 NIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGD 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,708,132
Number of Sequences: 62578
Number of extensions: 190773
Number of successful extensions: 408
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 39
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)