BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026969
MAALSLGLGIASTAITTVRTTRRPARTKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE
KDAEAREAFEQHVREEAERRRALRQSRVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLN
QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT
KILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK

High Scoring Gene Products

Symbol, full name Information P value
AT1G62780 protein from Arabidopsis thaliana 5.2e-65

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026969
        (230 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2026247 - symbol:AT1G62780 "AT1G62780" species...   662  5.2e-65   1


>TAIR|locus:2026247 [details] [associations]
            symbol:AT1G62780 "AT1G62780" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] [GO:0009902 "chloroplast
            relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0019252 "starch biosynthetic
            process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
            biosynthetic process, mevalonate-independent pathway" evidence=RCA]
            [GO:0034660 "ncRNA metabolic process" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009570 EMBL:AY072395 EMBL:BT000176
            IPI:IPI00545546 RefSeq:NP_176466.1 UniGene:At.36223 STRING:Q8VY70
            PaxDb:Q8VY70 PRIDE:Q8VY70 ProMEX:Q8VY70 DNASU:842577
            EnsemblPlants:AT1G62780.1 GeneID:842577 KEGG:ath:AT1G62780
            TAIR:At1g62780 eggNOG:NOG267157 HOGENOM:HOG000006436
            InParanoid:Q8VY70 OMA:EAYDKMQ PhylomeDB:Q8VY70
            ProtClustDB:CLSN2682350 ArrayExpress:Q8VY70 Genevestigator:Q8VY70
            Uniprot:Q8VY70
        Length = 237

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 135/230 (58%), Positives = 165/230 (71%)

Query:     1 MAALSLGLGIXXXXXXXXXXXXXXXXXKFRISCVQWDPEGILGSAQTGHIARLEFKRRLE 60
             MA LS G+                   + +I+C +WDP+G+LG AQTGHIARLEFKRRLE
Sbjct:     1 MATLSFGIA---AAATTVRTIPRFNSRRSKITC-EWDPKGVLGPAQTGHIARLEFKRRLE 56

Query:    61 KDAEAREAFXXXXXXXXXXXXXXXXXXXXPDTAEEMIEYFLDTEAQELEFEIARLRPRLN 120
             +D+EAREAF                    PDTA E+IEYFLDTEAQE+E+EIARLR RLN
Sbjct:    57 RDSEAREAFQKQLREEKERRQALRQSRVVPDTAAELIEYFLDTEAQEIEYEIARLRGRLN 116

Query:   121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLT 180
              EFF+ ++ E+GQ+RFAV+KT D+EDRLIELE LQKAL EG EAYD MQ +L+TA  SLT
Sbjct:   117 DEFFAQIRLEIGQIRFAVTKTADIEDRLIELETLQKALEEGIEAYDKMQNELMTATNSLT 176

Query:   181 KILTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQVAAFMEK 230
             K+LTS D+K TLL++VE+N+INRSLL LLDENIANA K +QK+   +MEK
Sbjct:   177 KLLTSTDIKTTLLDMVEKNQINRSLLALLDENIANAYKGNQKEAGDYMEK 226


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.353    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      230       193   0.00098  110 3  10 22  0.46    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  190 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.52u 0.15s 27.67t   Elapsed:  00:00:01
  Total cpu time:  27.52u 0.15s 27.67t   Elapsed:  00:00:01
  Start:  Thu May  9 16:28:09 2013   End:  Thu May  9 16:28:10 2013

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