Query 026969
Match_columns 230
No_of_seqs 23 out of 25
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 03:09:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09726 Macoilin: Transmembra 79.3 43 0.00093 34.5 12.9 62 55-117 493-559 (697)
2 PF08031 BBE: Berberine and be 69.4 2 4.3E-05 29.2 0.6 12 36-47 34-45 (47)
3 PF11123 DNA_Packaging_2: DNA 68.9 13 0.00027 29.5 4.9 45 118-169 28-72 (82)
4 PF05546 She9_MDM33: She9 / Md 61.2 1.3E+02 0.0028 27.3 10.8 79 150-229 47-131 (207)
5 PRK09039 hypothetical protein; 56.2 1.3E+02 0.0028 28.1 10.0 25 96-120 39-63 (343)
6 KOG4807 F-actin binding protei 50.2 2.2E+02 0.0048 29.0 10.9 81 36-116 315-406 (593)
7 PF04102 SlyX: SlyX; InterPro 47.2 98 0.0021 22.6 6.3 38 144-181 2-39 (69)
8 TIGR00985 3a0801s04tom mitocho 44.7 80 0.0017 26.9 6.2 18 85-102 75-92 (148)
9 PF01984 dsDNA_bind: Double-st 41.7 59 0.0013 26.0 4.7 40 172-211 43-92 (107)
10 PF09862 DUF2089: Protein of u 41.7 29 0.00063 28.4 3.0 31 173-203 64-105 (113)
11 PHA00425 DNA packaging protein 41.6 77 0.0017 25.4 5.2 69 93-168 3-73 (88)
12 PRK04239 hypothetical protein; 40.1 52 0.0011 27.0 4.2 40 172-211 48-97 (110)
13 PRK00846 hypothetical protein; 35.2 1.5E+02 0.0032 22.9 5.8 40 140-179 7-46 (77)
14 COG3283 TyrR Transcriptional r 33.8 50 0.0011 33.2 3.8 39 87-129 373-411 (511)
15 PF11328 DUF3130: Protein of u 32.0 1.2E+02 0.0026 24.5 5.0 36 149-184 41-76 (90)
16 PRK02793 phi X174 lysis protei 31.9 2.1E+02 0.0046 21.3 6.0 32 142-173 4-35 (72)
17 PRK04325 hypothetical protein; 31.2 2.2E+02 0.0048 21.3 6.1 31 143-173 6-36 (74)
18 PF10475 DUF2450: Protein of u 30.2 4E+02 0.0088 23.8 10.7 100 99-198 7-120 (291)
19 PF03693 RHH_2: Uncharacterise 29.7 70 0.0015 24.2 3.2 46 118-163 8-59 (80)
20 PF13404 HTH_AsnC-type: AsnC-t 29.6 40 0.00086 22.6 1.7 14 199-212 2-15 (42)
21 PRK04406 hypothetical protein; 28.3 2.3E+02 0.0051 21.3 5.8 37 143-179 8-44 (75)
22 PRK02119 hypothetical protein; 27.9 2.6E+02 0.0056 20.9 6.1 37 143-179 6-42 (73)
23 PF12729 4HB_MCP_1: Four helix 27.6 2.6E+02 0.0056 20.8 11.1 31 197-227 151-181 (181)
24 PF05008 V-SNARE: Vesicle tran 25.7 2.5E+02 0.0055 20.0 6.2 46 123-173 4-49 (79)
25 COG1390 NtpE Archaeal/vacuolar 25.7 2.1E+02 0.0045 25.0 5.8 39 142-190 67-105 (194)
26 PRK00736 hypothetical protein; 25.3 2.8E+02 0.0061 20.4 6.0 31 143-173 2-32 (68)
27 TIGR02606 antidote_CC2985 puta 24.8 1.2E+02 0.0027 22.2 3.7 20 118-137 5-24 (69)
28 PRK14063 exodeoxyribonuclease 22.8 2.6E+02 0.0056 21.2 5.2 38 149-186 26-63 (76)
29 TIGR01807 CM_P2 chorismate mut 22.7 97 0.0021 22.5 2.8 24 199-222 9-32 (76)
30 PRK12705 hypothetical protein; 22.6 8.1E+02 0.017 24.7 15.9 82 143-228 99-182 (508)
31 PF10136 SpecificRecomb: Site- 22.4 6.6E+02 0.014 26.2 9.5 109 105-214 165-300 (643)
32 TIGR01803 CM-like chorismate m 22.4 81 0.0018 23.3 2.4 24 199-222 9-32 (82)
33 PF07067 DUF1340: Protein of u 22.4 2.8E+02 0.0062 25.5 6.2 50 86-135 63-127 (236)
34 KOG2580 Mitochondrial import i 21.7 1.6E+02 0.0035 29.6 4.8 56 99-162 295-352 (459)
35 KOG3054 Uncharacterized conser 21.1 2.3E+02 0.005 27.0 5.5 25 37-61 83-110 (299)
36 PHA02107 hypothetical protein 21.0 1.6E+02 0.0035 26.6 4.3 38 121-158 166-203 (216)
37 PRK00295 hypothetical protein; 20.6 3.6E+02 0.0077 19.9 6.0 31 143-173 2-32 (68)
38 COG3461 Uncharacterized conser 20.4 1.5E+02 0.0031 24.4 3.6 45 59-103 42-88 (103)
39 PRK14066 exodeoxyribonuclease 20.2 3.1E+02 0.0068 20.8 5.2 38 150-187 26-63 (75)
40 PF08182 Pedibin: Pedibin/Hym- 20.0 90 0.002 21.4 2.0 32 127-161 2-33 (35)
No 1
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=79.34 E-value=43 Score=34.54 Aligned_cols=62 Identities=24% Similarity=0.412 Sum_probs=40.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----CCHHHHHHHhhcCchhhhHHHHHhhcc
Q 026969 55 FKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLP-----DTAEEMIEYFLDTEAQELEFEIARLRP 117 (230)
Q Consensus 55 f~r~le~dae~~ea~erq~~~e~e~r~~~ReaRv~P-----dt~~~LIEyfLdTea~EmEyEiaRcRP 117 (230)
.-|||..+..+|..+|+|..+|+.+++++.+..-.| .+-.+-=|. +-.-.++||-||.++|-
T Consensus 493 LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~-~r~r~~~lE~E~~~lr~ 559 (697)
T PF09726_consen 493 LEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAES-CRQRRRQLESELKKLRR 559 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHH-HHHHHHHHHHHHHHHHH
Confidence 457788889999999999999998877654333333 111122222 34456888888888664
No 2
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=69.42 E-value=2 Score=29.24 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=7.4
Q ss_pred cCCCCcCCCCcc
Q 026969 36 WDPEGILGSAQT 47 (230)
Q Consensus 36 wDPEgl~g~pqt 47 (230)
|||+|+|..||+
T Consensus 34 yDP~n~F~~~q~ 45 (47)
T PF08031_consen 34 YDPDNVFRFPQS 45 (47)
T ss_dssp H-TT-TS-STTS
T ss_pred hCccceeCCCCC
Confidence 999999987764
No 3
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=68.85 E-value=13 Score=29.47 Aligned_cols=45 Identities=29% Similarity=0.392 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHhchhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 118 RLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQ 169 (230)
Q Consensus 118 rLt~~Ff~~L~~ei~~~rfa~~r~~~~Edrl~ELEAL~k~l~eg~EayDk~~ 169 (230)
+=||-.|+.|..-+...+|.++|-.-.+.-|++|++ |.++|+++.
T Consensus 28 kRsPQLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~-------aL~ey~~~~ 72 (82)
T PF11123_consen 28 KRSPQLYNAIGKLLDRHKFQISKLQPDENILGELAA-------ALEEYKKMV 72 (82)
T ss_pred hcChHHHHHHHHHHHHccchhhhcCccHHHHHHHHH-------HHHHHHHHc
Confidence 447889999999999999999999888888998876 467777654
No 4
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=61.21 E-value=1.3e+02 Score=27.27 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch------hhHHHHHHHHHhchhhHHHHHHHHHhHHHHhhhchHH
Q 026969 150 ELEALQKALLEGTEAYDNMQADLITARKSLTKILTSK------DVKATLLELVEQNKINRSLLTLLDENIANAQKSDQKQ 223 (230)
Q Consensus 150 ELEAL~k~l~eg~EayDk~~~~l~~akerl~kiLtsk------D~KatlLEMve~nEid~sLlaLLdeNiasA~~a~q~q 223 (230)
.|++.++-+.++-.+|+.+...-....--+..+|+-| |+.. .-+++.+.-.+.--..-++.....|+..-+..
T Consensus 47 ~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleR-FT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~ 125 (207)
T PF05546_consen 47 ELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLER-FTELYRNDHENEQAEEEAKEALEEAEEKVEEA 125 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888999999999999999999999999855 4443 77888888888888888888888888877777
Q ss_pred HHhhhh
Q 026969 224 VAAFME 229 (230)
Q Consensus 224 aA~FMe 229 (230)
-.++|+
T Consensus 126 ~~~L~~ 131 (207)
T PF05546_consen 126 FDDLMR 131 (207)
T ss_pred HHHHHH
Confidence 666654
No 5
>PRK09039 hypothetical protein; Validated
Probab=56.17 E-value=1.3e+02 Score=28.13 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=19.3
Q ss_pred HHHHhhcCchhhhHHHHHhhccCCC
Q 026969 96 MIEYFLDTEAQELEFEIARLRPRLN 120 (230)
Q Consensus 96 LIEyfLdTea~EmEyEiaRcRPrLt 120 (230)
++.|||+-++...+-|+.+..-.++
T Consensus 39 ~~q~fLs~~i~~~~~eL~~L~~qIa 63 (343)
T PRK09039 39 VAQFFLSREISGKDSALDRLNSQIA 63 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3689999999999988888654443
No 6
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=50.22 E-value=2.2e+02 Score=28.97 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=59.6
Q ss_pred cCCCCcCCCCccchhh---------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHH--HHHHhhcCc
Q 026969 36 WDPEGILGSAQTGHIA---------RLEFKRRLEKDAEAREAFEQHVREEAERRRALRQSRVLPDTAEE--MIEYFLDTE 104 (230)
Q Consensus 36 wDPEgl~g~pqtGhIa---------Rr~f~r~le~dae~~ea~erq~~~e~e~r~~~ReaRv~Pdt~~~--LIEyfLdTe 104 (230)
-||+|-+..-..|||- .|-|.-+=++---.-|.++|||+.|-++.+...+.=.--+|.+- -||-+-+.-
T Consensus 315 e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAh 394 (593)
T KOG4807|consen 315 EAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAH 394 (593)
T ss_pred cCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Confidence 5788877655556653 45667777777777788999999888887777665444555543 588888888
Q ss_pred hhhhHHHHHhhc
Q 026969 105 AQELEFEIARLR 116 (230)
Q Consensus 105 a~EmEyEiaRcR 116 (230)
-+|||.|+...+
T Consensus 395 rEEmeRELeKsq 406 (593)
T KOG4807|consen 395 REEMERELEKSQ 406 (593)
T ss_pred HHHHHHHHHhhh
Confidence 999999998865
No 7
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.23 E-value=98 Score=22.59 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 144 MEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTK 181 (230)
Q Consensus 144 ~Edrl~ELEAL~k~l~eg~EayDk~~~~l~~akerl~k 181 (230)
+|+|+.+||..-.+....+|.-++...+--.--.+|.+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~ 39 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQR 39 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999888888888887766654444444433
No 8
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=44.69 E-value=80 Score=26.95 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=13.3
Q ss_pred hcCCCCCCHHHHHHHhhc
Q 026969 85 QSRVLPDTAEEMIEYFLD 102 (230)
Q Consensus 85 eaRv~Pdt~~~LIEyfLd 102 (230)
..-+.|.|++++=.||++
T Consensus 75 ~~~p~p~d~~e~E~~Fl~ 92 (148)
T TIGR00985 75 AKAPDPTDPSEKEAFFLQ 92 (148)
T ss_pred hcCCCCCCHHHHHHHHHH
Confidence 334557799998888875
No 9
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=41.71 E-value=59 Score=26.02 Aligned_cols=40 Identities=25% Similarity=0.438 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhch-----hhHHHHHHHHHhchhh-----HHHHHHHHH
Q 026969 172 LITARKSLTKILTSK-----DVKATLLELVEQNKIN-----RSLLTLLDE 211 (230)
Q Consensus 172 l~~akerl~kiLtsk-----D~KatlLEMve~nEid-----~sLlaLLde 211 (230)
+-.|++||..|-.+| .+-..|+.|+.+|.|. ..|+.||++
T Consensus 43 t~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kI~d~~L~~iL~~ 92 (107)
T PF01984_consen 43 TPEARERLNRIKLVKPEKARQVENQLIQLAQSGQLRGKIDDEQLKEILEQ 92 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSS-B-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 345899999988877 4556788899999884 567788764
No 10
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=41.67 E-value=29 Score=28.44 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhh-----------chhhHHHHHHHHHhchhhH
Q 026969 173 ITARKSLTKILT-----------SKDVKATLLELVEQNKINR 203 (230)
Q Consensus 173 ~~akerl~kiLt-----------skD~KatlLEMve~nEid~ 203 (230)
=+.|.||-+|+. ..+.+.-||+|+++|||+.
T Consensus 64 PTvR~rLd~ii~~lg~~~~~~~~~~~~~~~IL~~L~~GeIs~ 105 (113)
T PF09862_consen 64 PTVRNRLDKIIEKLGYEEDEEEEEEDERKEILDKLEKGEISV 105 (113)
T ss_pred HHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHHHcCCCCH
Confidence 346667766654 3477899999999999974
No 11
>PHA00425 DNA packaging protein, small subunit
Probab=41.62 E-value=77 Score=25.43 Aligned_cols=69 Identities=23% Similarity=0.314 Sum_probs=47.7
Q ss_pred HHHHHHHh--hcCchhhhHHHHHhhccCCCHHHHHHHHHHhchhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 93 AEEMIEYF--LDTEAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNM 168 (230)
Q Consensus 93 ~~~LIEyf--LdTea~EmEyEiaRcRPrLt~~Ff~~L~~ei~~~rfa~~r~~~~Edrl~ELEAL~k~l~eg~EayDk~ 168 (230)
...|+.|+ ||||+-.-=-.=-|---+=||-.++.|-.-+...+|-++|-+-.|.-|++|.+. .+.|++.
T Consensus 3 d~~L~k~LemlDTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHkF~isKl~pD~~iLg~la~~-------l~ey~~~ 73 (88)
T PHA00425 3 DKSLIKFLEMLDTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHKFQISKLQPDENILGGLAAA-------LEEYKEK 73 (88)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHhcCccccChHHHHHHHHHHHHhcccccccCCcHHHHHHHHHH-------HHHHHHh
Confidence 44566553 566653322222233345588999999999999999999999999999998763 5566553
No 12
>PRK04239 hypothetical protein; Provisional
Probab=40.13 E-value=52 Score=26.98 Aligned_cols=40 Identities=28% Similarity=0.461 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhchh-----hHHHHHHHHHhchh-----hHHHHHHHHH
Q 026969 172 LITARKSLTKILTSKD-----VKATLLELVEQNKI-----NRSLLTLLDE 211 (230)
Q Consensus 172 l~~akerl~kiLtskD-----~KatlLEMve~nEi-----d~sLlaLLde 211 (230)
+-.|++||..|-.+|- +-+.|+.|+-+|.| |..|..||+.
T Consensus 48 t~eAreRL~rI~lvkPe~A~~VE~~liqlAq~G~i~~ki~e~~L~~lL~~ 97 (110)
T PRK04239 48 TPEARERLNRIKLVKPEFAEQVEQQLIQLAQSGRIQGPIDDEQLKEILEQ 97 (110)
T ss_pred CHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 4468999999988774 45567889999987 6678888865
No 13
>PRK00846 hypothetical protein; Provisional
Probab=35.18 E-value=1.5e+02 Score=22.94 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=28.9
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 140 KTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSL 179 (230)
Q Consensus 140 r~~~~Edrl~ELEAL~k~l~eg~EayDk~~~~l~~akerl 179 (230)
++..+++|+.+||.---+....+|.-++.....-..-.+|
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L 46 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARN 46 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999887777777777777666544444444
No 14
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=33.84 E-value=50 Score=33.19 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHhhcCchhhhHHHHHhhccCCCHHHHHHHHH
Q 026969 87 RVLPDTAEEMIEYFLDTEAQELEFEIARLRPRLNQEFFSHLKF 129 (230)
Q Consensus 87 Rv~Pdt~~~LIEyfLdTea~EmEyEiaRcRPrLt~~Ff~~L~~ 129 (230)
|.-|+|-.-|.|+|+ +.+--|+..-+|+|+++|..+|+.
T Consensus 373 Rer~~di~pL~e~Fv----~q~s~elg~p~pkl~~~~~~~L~~ 411 (511)
T COG3283 373 RERPQDIMPLAELFV----QQFSDELGVPRPKLAADLLTVLTR 411 (511)
T ss_pred ccCcccchHHHHHHH----HHHHHHhCCCCCccCHHHHHHHHH
Confidence 444789999999996 577889999999999999999987
No 15
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=32.01 E-value=1.2e+02 Score=24.46 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026969 149 IELEALQKALLEGTEAYDNMQADLITARKSLTKILT 184 (230)
Q Consensus 149 ~ELEAL~k~l~eg~EayDk~~~~l~~akerl~kiLt 184 (230)
-.+.-|.++|.+.++.+|..|.=+-+.-.||.|+=.
T Consensus 41 Nsin~~r~Al~dLv~~Ve~fq~v~~~DA~RlkkmG~ 76 (90)
T PF11328_consen 41 NSINQLRTALIDLVDVVENFQQVVKKDASRLKKMGK 76 (90)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999999999988744
No 16
>PRK02793 phi X174 lysis protein; Provisional
Probab=31.86 E-value=2.1e+02 Score=21.29 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=24.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 142 QDMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (230)
Q Consensus 142 ~~~Edrl~ELEAL~k~l~eg~EayDk~~~~l~ 173 (230)
.++|+|+.+||..-......++.-+++..+.-
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq 35 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHE 35 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999988888888877777655443
No 17
>PRK04325 hypothetical protein; Provisional
Probab=31.18 E-value=2.2e+02 Score=21.27 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 143 DMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (230)
Q Consensus 143 ~~Edrl~ELEAL~k~l~eg~EayDk~~~~l~ 173 (230)
.+++|+.+||..-.....-+|--++...+--
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq 36 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQ 36 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999988888888887777655433
No 18
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.18 E-value=4e+02 Score=23.83 Aligned_cols=100 Identities=24% Similarity=0.360 Sum_probs=60.8
Q ss_pred HhhcCchhhhHHHHHhhccC-CCHHHHHHHHHHhchhhhhh---------ccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 99 YFLDTEAQELEFEIARLRPR-LNQEFFSHLKFELGQLRFAV---------SKTQDMEDRLIELEALQKALLEGTEAYDNM 168 (230)
Q Consensus 99 yfLdTea~EmEyEiaRcRPr-Lt~~Ff~~L~~ei~~~rfa~---------~r~~~~Edrl~ELEAL~k~l~eg~EayDk~ 168 (230)
.||+.+..-+.||+...=+- ++.+.+..+...+..--=.| .+....-.-+..+..|++-+..++.-..+.
T Consensus 7 ~yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~ 86 (291)
T PF10475_consen 7 IYFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNL 86 (291)
T ss_pred hhcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777766666 67666665544443221111 222233445566777888888888777777
Q ss_pred HHHHHHHHHHHHH----HhhchhhHHHHHHHHHh
Q 026969 169 QADLITARKSLTK----ILTSKDVKATLLELVEQ 198 (230)
Q Consensus 169 ~~~l~~akerl~k----iLtskD~KatlLEMve~ 198 (230)
...|..+++.+++ |+....+|..+.++.+.
T Consensus 87 R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~ 120 (291)
T PF10475_consen 87 RRNLKSADENLTKSGLEILRLQRKRQNLKKLLEK 120 (291)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777643 55566666665555443
No 19
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=29.66 E-value=70 Score=24.21 Aligned_cols=46 Identities=30% Similarity=0.447 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHhchhhhhhc----cCc--hhhHHHHHHHHHHHHHHHHHH
Q 026969 118 RLNQEFFSHLKFELGQLRFAVS----KTQ--DMEDRLIELEALQKALLEGTE 163 (230)
Q Consensus 118 rLt~~Ff~~L~~ei~~~rfa~~----r~~--~~Edrl~ELEAL~k~l~eg~E 163 (230)
-|||++-++++..+.+=+|+-. +.. ..+++-.++++|+..|.+|.+
T Consensus 8 sL~~~~~~~i~~~V~sG~Y~s~SEvvR~aLRlle~~e~~~~~Lr~~l~~g~~ 59 (80)
T PF03693_consen 8 SLTPELEAFIEEQVASGRYSSASEVVREALRLLEEREAKLEALREALQEGLE 59 (80)
T ss_dssp ---HHHHHHHHHHHCTTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3788999999998877776511 111 223344455666666665553
No 20
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=29.63 E-value=40 Score=22.59 Aligned_cols=14 Identities=36% Similarity=0.821 Sum_probs=11.5
Q ss_pred chhhHHHHHHHHHh
Q 026969 199 NKINRSLLTLLDEN 212 (230)
Q Consensus 199 nEid~sLlaLLdeN 212 (230)
+++|+.||.+|++|
T Consensus 2 D~~D~~Il~~Lq~d 15 (42)
T PF13404_consen 2 DELDRKILRLLQED 15 (42)
T ss_dssp -HHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHc
Confidence 57999999999999
No 21
>PRK04406 hypothetical protein; Provisional
Probab=28.34 E-value=2.3e+02 Score=21.35 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 143 DMEDRLIELEALQKALLEGTEAYDNMQADLITARKSL 179 (230)
Q Consensus 143 ~~Edrl~ELEAL~k~l~eg~EayDk~~~~l~~akerl 179 (230)
.+|+|+.+||..--+...-+|.-++...+--+--.+|
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L 44 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKM 44 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999988888888887777665544333333
No 22
>PRK02119 hypothetical protein; Provisional
Probab=27.90 E-value=2.6e+02 Score=20.90 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 143 DMEDRLIELEALQKALLEGTEAYDNMQADLITARKSL 179 (230)
Q Consensus 143 ~~Edrl~ELEAL~k~l~eg~EayDk~~~~l~~akerl 179 (230)
.+|+|+.+||.--.+....++.-++....--+--.+|
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L 42 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKM 42 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999888888888877776655443333333
No 23
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=27.63 E-value=2.6e+02 Score=20.79 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=24.3
Q ss_pred HhchhhHHHHHHHHHhHHHHhhhchHHHHhh
Q 026969 197 EQNKINRSLLTLLDENIANAQKSDQKQVAAF 227 (230)
Q Consensus 197 e~nEid~sLlaLLdeNiasA~~a~q~qaA~F 227 (230)
..++++.++-.|.+.|...|+++.+.-.+.|
T Consensus 151 ~~~~~~~~l~~l~~~~~~~a~~~~~~~~~~y 181 (181)
T PF12729_consen 151 AFDELRDALDELIEYNNQQAEQAYAEAQASY 181 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567888888999999999988887766544
No 24
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.73 E-value=2.5e+02 Score=20.00 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=34.7
Q ss_pred HHHHHHHHhchhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 123 FFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (230)
Q Consensus 123 Ff~~L~~ei~~~rfa~~r~~~~Edrl~ELEAL~k~l~eg~EayDk~~~~l~ 173 (230)
.++.|++.|+++. +..+++|..-+...+..|.++-+..++|-..+-
T Consensus 4 l~~~i~~~l~~~~-----~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 4 LTAEIKSKLERIK-----NLSGEQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHGG-----GS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh-----ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666664 223489999999999999999999999887643
No 25
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=25.66 E-value=2.1e+02 Score=25.02 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=27.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHH
Q 026969 142 QDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKA 190 (230)
Q Consensus 142 ~~~Edrl~ELEAL~k~l~eg~EayDk~~~~l~~akerl~kiLtskD~Ka 190 (230)
...+.|..-|++.+++|...+++ ..++|..+.+.++...
T Consensus 67 A~le~r~~~Le~~ee~l~~~~~~----------~~e~L~~i~~~~~~~~ 105 (194)
T COG1390 67 ALLEARRKLLEAKEEILESVFEA----------VEEKLRNIASDPEYES 105 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHcCcCCcchHH
Confidence 46678888999999998886654 3455666655555544
No 26
>PRK00736 hypothetical protein; Provisional
Probab=25.27 E-value=2.8e+02 Score=20.40 Aligned_cols=31 Identities=29% Similarity=0.273 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 143 DMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (230)
Q Consensus 143 ~~Edrl~ELEAL~k~l~eg~EayDk~~~~l~ 173 (230)
++|+|+.+||.--......+|.-++....--
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq 32 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQW 32 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999887777777777666555433
No 27
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=24.83 E-value=1.2e+02 Score=22.20 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHhchhhhh
Q 026969 118 RLNQEFFSHLKFELGQLRFA 137 (230)
Q Consensus 118 rLt~~Ff~~L~~ei~~~rfa 137 (230)
-|||.+-.+++..+.+-||+
T Consensus 5 sL~~~~~~~i~~~V~sG~Y~ 24 (69)
T TIGR02606 5 SLGEHLESFIRSQVQSGRYG 24 (69)
T ss_pred ecCHHHHHHHHHHHHCCCCC
Confidence 37888899999998888877
No 28
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.85 E-value=2.6e+02 Score=21.18 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 026969 149 IELEALQKALLEGTEAYDNMQADLITARKSLTKILTSK 186 (230)
Q Consensus 149 ~ELEAL~k~l~eg~EayDk~~~~l~~akerl~kiLtsk 186 (230)
+-|+..-+...+|++.+...+..|-.++.++..|+...
T Consensus 26 l~Leesl~lyeeG~~L~k~C~~~L~~aE~ki~~l~~~~ 63 (76)
T PRK14063 26 VPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVILGED 63 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45777778888999999999999999999999888654
No 29
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=22.66 E-value=97 Score=22.53 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=19.1
Q ss_pred chhhHHHHHHHHHhHHHHhhhchH
Q 026969 199 NKINRSLLTLLDENIANAQKSDQK 222 (230)
Q Consensus 199 nEid~sLlaLLdeNiasA~~a~q~ 222 (230)
++||+.|++||.+=..-+.+.|..
T Consensus 9 D~iD~~iv~Ll~~R~~~~~~i~~~ 32 (76)
T TIGR01807 9 DAIDDRILDLLSERATYAQAVGEL 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999887776665543
No 30
>PRK12705 hypothetical protein; Provisional
Probab=22.61 E-value=8.1e+02 Score=24.74 Aligned_cols=82 Identities=15% Similarity=0.240 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchhhHHHHHHHHHhchhhHHHHHHHHHhHHHHhhhc
Q 026969 143 DMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKI--LTSKDVKATLLELVEQNKINRSLLTLLDENIANAQKSD 220 (230)
Q Consensus 143 ~~Edrl~ELEAL~k~l~eg~EayDk~~~~l~~akerl~ki--LtskD~KatlLEMve~nEid~sLlaLLdeNiasA~~a~ 220 (230)
..+++..+|+..++.+..-....++. .......|.+| ||+...|..|++.++ ++++...-.++.+-...|+...
T Consensus 99 ~l~~~~~~l~~~~~~l~~~~~~~~~~---~~~~~~~Le~ia~lt~~eak~~l~~~~~-~~~~~e~~~~i~~~e~~~~~~a 174 (508)
T PRK12705 99 KLDNLENQLEEREKALSARELELEEL---EKQLDNELYRVAGLTPEQARKLLLKLLD-AELEEEKAQRVKKIEEEADLEA 174 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444 33444556666 667889999999987 5788888999999999999888
Q ss_pred hHHHHhhh
Q 026969 221 QKQVAAFM 228 (230)
Q Consensus 221 q~qaA~FM 228 (230)
+..|-.++
T Consensus 175 ~~~A~~ii 182 (508)
T PRK12705 175 ERKAQNIL 182 (508)
T ss_pred HHHHHHHH
Confidence 88776654
No 31
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=22.44 E-value=6.6e+02 Score=26.16 Aligned_cols=109 Identities=25% Similarity=0.265 Sum_probs=70.0
Q ss_pred hhhhHHHHHhhccCCCH--HHHHHHHHHhchhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q 026969 105 AQELEFEIARLRPRLNQ--EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQA------------ 170 (230)
Q Consensus 105 a~EmEyEiaRcRPrLt~--~Ff~~L~~ei~~~rfa~~r~~~~Edrl~ELEAL~k~l~eg~EayDk~~~------------ 170 (230)
+..||-|+.|+=|.+.. +=|-.|+.|+....-+........+.. ...-|+..+....+.+|+...
T Consensus 165 a~glepel~r~~p~~~~~~sPF~al~~e~~~~~~~~~~~~~~~~~~-d~~~l~vll~qCr~~v~~v~~~~~~~G~Sv~l~ 243 (643)
T PF10136_consen 165 AEGLEPELRRRMPELEERDSPFVALQREVEAFLEAYRQQDEDPDSE-DLKHLRVLLDQCREQVDRVRKHLEKYGVSVSLV 243 (643)
T ss_pred hcccCHHHHhhCCCCcccCCCHHHHHHHHHHHHHHHhhcccccccc-cHHHHHHHHHHHHHHHHHHHHhccccCeeHHHH
Confidence 45778899999998643 234456777777765555444332222 455666666677777777555
Q ss_pred ----HHHHHHHHHHHHhh-----chhhH----HHHHHHHHhchhhHHHHHHHHHhHH
Q 026969 171 ----DLITARKSLTKILT-----SKDVK----ATLLELVEQNKINRSLLTLLDENIA 214 (230)
Q Consensus 171 ----~l~~akerl~kiLt-----skD~K----atlLEMve~nEid~sLlaLLdeNia 214 (230)
.|-+--.||..||. +++.. .-+.++|..+-=.+|+-.|..+|..
T Consensus 244 ~~L~Rl~Q~L~Ri~~Ll~~l~~~~~~~~~~~~~L~~~Lv~~~~~r~sir~L~~~n~~ 300 (643)
T PF10136_consen 244 FLLERLRQQLDRIELLLDLLVDDSPDRRRAIVRLFKELVRAECRRNSIRALWRSNTS 300 (643)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 35555566655544 33333 3456778888889999999999975
No 32
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=22.39 E-value=81 Score=23.32 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=19.4
Q ss_pred chhhHHHHHHHHHhHHHHhhhchH
Q 026969 199 NKINRSLLTLLDENIANAQKSDQK 222 (230)
Q Consensus 199 nEid~sLlaLLdeNiasA~~a~q~ 222 (230)
++||+.|++||.+=..-|++.|..
T Consensus 9 D~ID~~lv~Ll~~R~~~~~~ia~~ 32 (82)
T TIGR01803 9 DRIDLALVQALGRRMDYVKRASEF 32 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999988777766543
No 33
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=22.39 E-value=2.8e+02 Score=25.55 Aligned_cols=50 Identities=34% Similarity=0.580 Sum_probs=43.1
Q ss_pred cCCCCCCHHHHHHHhhcCchhhhHHHH--------HhhccC-------CCHHHHHHHHHHhchhh
Q 026969 86 SRVLPDTAEEMIEYFLDTEAQELEFEI--------ARLRPR-------LNQEFFSHLKFELGQLR 135 (230)
Q Consensus 86 aRv~Pdt~~~LIEyfLdTea~EmEyEi--------aRcRPr-------Lt~~Ff~~L~~ei~~~r 135 (230)
++.-|.|.+++-||+-|.=+++++-=+ .-|||- |+.+.|.+...||..+|
T Consensus 63 sklSp~Tl~dmreyitdgL~NDlq~yL~~~y~~~~~~~rpd~dk~NAGL~eeLfkq~~~Ei~~Lr 127 (236)
T PF07067_consen 63 SKLSPATLDDMREYITDGLANDLQEYLSKHYTSRSVKCRPDTDKTNAGLPEELFKQYREEIEELR 127 (236)
T ss_pred hhCChhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCccCCCcccccCCCCHHHHHHHHHHHHHHH
Confidence 677799999999999999999987533 457885 78899999999999998
No 34
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.67 E-value=1.6e+02 Score=29.63 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=44.5
Q ss_pred HhhcCchhhhHHHHHhhccCCC-HHHHHHHHHHhch-hhhhhccCchhhHHHHHHHHHHHHHHHHH
Q 026969 99 YFLDTEAQELEFEIARLRPRLN-QEFFSHLKFELGQ-LRFAVSKTQDMEDRLIELEALQKALLEGT 162 (230)
Q Consensus 99 yfLdTea~EmEyEiaRcRPrLt-~~Ff~~L~~ei~~-~rfa~~r~~~~Edrl~ELEAL~k~l~eg~ 162 (230)
.|-.||+-+-=-||.+.-|-.+ ++|..++..-|-- +=.|..++ .||.|.+|..|+.
T Consensus 295 ~fsktE~Sev~tei~~iDPsF~~~~Flr~~ee~IiPnVLeAyvkG--------D~evLK~wcsea~ 352 (459)
T KOG2580|consen 295 LFSKTEMSEVLTEIKKIDPSFDKEDFLRECEEYIIPNVLEAYVKG--------DLEVLKKWCSEAP 352 (459)
T ss_pred cchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhHHHHHHHHhc--------cHHHHHHHHhhhH
Confidence 4667999999999999999885 7899999987743 33344444 6999999999986
No 35
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.07 E-value=2.3e+02 Score=26.99 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=17.3
Q ss_pred CCCCcCC---CCccchhhHHHHHHHhhh
Q 026969 37 DPEGILG---SAQTGHIARLEFKRRLEK 61 (230)
Q Consensus 37 DPEgl~g---~pqtGhIaRr~f~r~le~ 61 (230)
|-..+.| .|+.||+.-++=+|+..+
T Consensus 83 e~~~~dg~ee~~e~~~~~~kigkkK~aK 110 (299)
T KOG3054|consen 83 EEGSGDGDEEEPEAGGLQAKIGKKKEAK 110 (299)
T ss_pred cccccccccccccccchhhhhhhHHHHH
Confidence 3344555 699999988887766554
No 36
>PHA02107 hypothetical protein
Probab=21.02 E-value=1.6e+02 Score=26.60 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhchhhhhhccCchhhHHHHHHHHHHHHH
Q 026969 121 QEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKAL 158 (230)
Q Consensus 121 ~~Ff~~L~~ei~~~rfa~~r~~~~Edrl~ELEAL~k~l 158 (230)
|+--..++---|.+.|+-.|-.+.+..+.||+|++|-+
T Consensus 166 ~~~~KAi~~iRG~~~F~S~Ri~EID~EI~~LQA~RKEi 203 (216)
T PHA02107 166 PETMKAVQLVRGVFHFASVRISEIDEEIKELQARRKEI 203 (216)
T ss_pred HHHHHHHHHHHHHhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 33334566666888899888889999999999999943
No 37
>PRK00295 hypothetical protein; Provisional
Probab=20.59 E-value=3.6e+02 Score=19.86 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 143 DMEDRLIELEALQKALLEGTEAYDNMQADLI 173 (230)
Q Consensus 143 ~~Edrl~ELEAL~k~l~eg~EayDk~~~~l~ 173 (230)
++|+|+.+||.--.+...-+|.-++....--
T Consensus 2 ~~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq 32 (68)
T PRK00295 2 SLEERVTELESRQAFQDDTIQALNDVLVEQQ 32 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999888888877877776655433
No 38
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=20.41 E-value=1.5e+02 Score=24.44 Aligned_cols=45 Identities=27% Similarity=0.265 Sum_probs=34.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH--HhhhcCCCCCCHHHHHHHhhcC
Q 026969 59 LEKDAEAREAFEQHVREEAERRR--ALRQSRVLPDTAEEMIEYFLDT 103 (230)
Q Consensus 59 le~dae~~ea~erq~~~e~e~r~--~~ReaRv~Pdt~~~LIEyfLdT 103 (230)
..+|.+++..++....+|++--. -.=-.|..|+=..+|-||+++|
T Consensus 42 ~tKD~~~r~ImehnrdeE~eHa~mlLEwlrR~~p~wd~eL~eiLft~ 88 (103)
T COG3461 42 ATKDEDLRAIMEHNRDEEKEHAAMLLEWLRRHDPAWDAELHEILFTT 88 (103)
T ss_pred ccccHhHHHHHHHcccHHHHHHHHHHHHHHHcCchHHHHHHHHHhcC
Confidence 35678888888888888887632 2233578899999999999987
No 39
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.17 E-value=3.1e+02 Score=20.75 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 026969 150 ELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKD 187 (230)
Q Consensus 150 ELEAL~k~l~eg~EayDk~~~~l~~akerl~kiLtskD 187 (230)
-|+-.-+...+|++.+-..+..|-+|+.++..|+..++
T Consensus 26 ~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~~l~~~~~ 63 (75)
T PRK14066 26 SLDDSLKAFEEGVKHAAFCSKKLDEAERRVEVLLKQKD 63 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 46666777789999999999999999999998887544
No 40
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=20.04 E-value=90 Score=21.37 Aligned_cols=32 Identities=34% Similarity=0.252 Sum_probs=23.9
Q ss_pred HHHHhchhhhhhccCchhhHHHHHHHHHHHHHHHH
Q 026969 127 LKFELGQLRFAVSKTQDMEDRLIELEALQKALLEG 161 (230)
Q Consensus 127 L~~ei~~~rfa~~r~~~~Edrl~ELEAL~k~l~eg 161 (230)
|+.||.++..- -.++||+--+||-=+|.|++.
T Consensus 2 L~~EI~~Lq~~---~a~Gedv~~~LE~Kek~L~n~ 33 (35)
T PF08182_consen 2 LCAEIDVLQIQ---LADGEDVCKELEQKEKELSNF 33 (35)
T ss_pred HHHHHHHHHHH---HhcchhHHHHHHHHHHHHHhc
Confidence 66777776532 347899999999999888763
Done!