Query 026969
Match_columns 230
No_of_seqs 23 out of 25
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 04:21:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l3l_A Tubulin-specific chaper 64.8 13 0.00043 28.8 5.5 64 81-167 17-86 (111)
2 2ygw_A Malonyl-COA decarboxyla 63.1 13 0.00043 35.6 6.2 95 105-211 34-158 (460)
3 2fh0_A Hypothetical 16.0 kDa p 53.1 20 0.00068 26.9 4.6 39 173-211 17-65 (81)
4 1eij_A Hypothetical protein MT 51.3 22 0.00077 26.5 4.6 39 173-211 19-67 (80)
5 2jxn_A Uncharacterized protein 44.5 29 0.001 27.7 4.7 40 172-211 51-100 (127)
6 2cru_A Programmed cell death p 39.8 39 0.0013 26.7 4.6 40 172-211 48-97 (118)
7 2b5u_A Colicin E3; high resolu 35.3 1.4E+02 0.0046 29.4 8.4 46 34-79 271-320 (551)
8 2hvu_A PDCD5-like protein; YMR 31.6 60 0.002 25.7 4.5 40 172-211 51-100 (116)
9 3kxe_C Antitoxin protein PARD- 30.6 55 0.0019 24.2 3.9 46 118-163 9-60 (88)
10 3anw_B GINS23, putative unchar 29.6 89 0.003 26.0 5.4 54 118-184 76-134 (171)
11 2qme_I CRIB domain of the seri 27.9 24 0.00081 22.2 1.3 11 30-40 10-21 (36)
12 3onj_A T-snare VTI1; helix, HA 27.8 1.4E+02 0.0047 22.0 5.7 48 122-174 12-59 (97)
13 1cee_B Wiskott-aldrich syndrom 27.6 21 0.00073 24.6 1.1 13 30-42 17-29 (59)
14 3nr7_A DNA-binding protein H-N 26.7 1.9E+02 0.0064 21.5 6.3 72 122-205 6-77 (86)
15 1vcs_A Vesicle transport throu 23.8 1.4E+02 0.0049 22.1 5.2 44 123-171 17-60 (102)
16 3hot_A Transposable element ma 22.9 1.4E+02 0.0048 24.5 5.5 58 117-186 278-340 (345)
17 3efg_A Protein SLYX homolog; x 22.4 2.2E+02 0.0077 20.5 6.5 39 141-179 9-47 (78)
18 2qyw_A Vesicle transport throu 22.4 1.7E+02 0.006 21.7 5.4 46 123-172 27-72 (102)
19 2odb_B Serine/threonine-protei 22.2 26 0.00089 21.8 0.7 16 30-45 10-27 (35)
No 1
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=64.81 E-value=13 Score=28.83 Aligned_cols=64 Identities=25% Similarity=0.342 Sum_probs=43.1
Q ss_pred HHhhhcCCCCCCHHHHHHHhhcC---chhhhHHHHHhhccCCCHHHHHHHHHHhchhhhhhccCchhhHHHHHHHHHHHH
Q 026969 81 RALRQSRVLPDTAEEMIEYFLDT---EAQELEFEIARLRPRLNQEFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKA 157 (230)
Q Consensus 81 ~~~ReaRv~Pdt~~~LIEyfLdT---ea~EmEyEiaRcRPrLt~~Ff~~L~~ei~~~rfa~~r~~~~Edrl~ELEAL~k~ 157 (230)
...++.+.-..++.+=++||+.+ +...||-.|..|. - +...++-+.++..|+++
T Consensus 17 ~~r~~~~~~~~~~~E~~~~F~~~F~~~~~~Ie~~l~~~~---~--------------------~~~ld~i~~~I~~Lqk~ 73 (111)
T 2l3l_A 17 ERRKQKRQNQEVEKENSHFFVATFARERAAVEELLERAE---S--------------------VERLEEAASRLQGLQKL 73 (111)
T ss_dssp HHHTTSSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHCC---S--------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhcCc---h--------------------hhHHHHHHHHHHHHHHH
Confidence 33455555556667789999876 4556777777764 1 22234556678889999
Q ss_pred HHHHHH---HHHH
Q 026969 158 LLEGTE---AYDN 167 (230)
Q Consensus 158 l~eg~E---ayDk 167 (230)
+.++.- .||.
T Consensus 74 v~das~fLp~YD~ 86 (111)
T 2l3l_A 74 INDSVFFLAAYDL 86 (111)
T ss_dssp HHHSTTTSCHHHH
T ss_pred HHHHhhhccHHHH
Confidence 999885 7886
No 2
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=63.09 E-value=13 Score=35.62 Aligned_cols=95 Identities=20% Similarity=0.248 Sum_probs=62.3
Q ss_pred hhhhHHHHHhhccCCCHH-----HHHHHHHHhchhhhhhccCchhhHHHHHHHHHHHHHH----H-----HHHHHHHHHH
Q 026969 105 AQELEFEIARLRPRLNQE-----FFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALL----E-----GTEAYDNMQA 170 (230)
Q Consensus 105 a~EmEyEiaRcRPrLt~~-----Ff~~L~~ei~~~rfa~~r~~~~Edrl~ELEAL~k~l~----e-----g~EayDk~~~ 170 (230)
++.+=-+|...=-.|+++ ||..|.. .|.+.+. ++ -+|++.|.. . ...+|+.+..
T Consensus 34 ~e~~a~~i~~~Y~~l~~~~~r~~fl~~La~-----~f~~d~~-----~v--~~a~~~y~~~~~~~~~~~~~~~~~~~L~~ 101 (460)
T 2ygw_A 34 AEGQCADFVSFYGGLAETAQRAELLGRLAR-----GFGVDHG-----QV--AEQSAGVLHLRQQQREAAVLLQAEDRLRY 101 (460)
T ss_dssp --CHHHHHHHHHHTCCSHHHHHHHHHHHHH-----HSSCCHH-----HH--HHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----HhCCCHH-----HH--HHHHHHHHhcccCCcchhHHHHHHHHHHH
Confidence 334444555555556665 9999988 4454433 21 245555554 1 1248888999
Q ss_pred HHHHHHHHHHHHhhch--------hhHHHHHHHHHhc--------hhhHHHHHHHHH
Q 026969 171 DLITARKSLTKILTSK--------DVKATLLELVEQN--------KINRSLLTLLDE 211 (230)
Q Consensus 171 ~l~~akerl~kiLtsk--------D~KatlLEMve~n--------Eid~sLlaLLde 211 (230)
++...+.+|.+-+..- |.|+.||++..++ .||..|-.||.+
T Consensus 102 aleP~r~~L~~rln~~pgG~~fLV~mRaDLL~~l~~~~~~~~~L~~Ld~dl~~Llss 158 (460)
T 2ygw_A 102 ALVPRYRGLFHHISKLDGGVRFLVQLRADLLEAQALKLVEGPDVREMNGVLKGMLSE 158 (460)
T ss_dssp HTSCTTHHHHHHHHTSTTHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 9999999998877632 9999999999877 567777666654
No 3
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=53.12 E-value=20 Score=26.88 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhch-----hhHHHHHHHHHhchh-----hHHHHHHHHH
Q 026969 173 ITARKSLTKILTSK-----DVKATLLELVEQNKI-----NRSLLTLLDE 211 (230)
Q Consensus 173 ~~akerl~kiLtsk-----D~KatlLEMve~nEi-----d~sLlaLLde 211 (230)
-.|++||..|-.+| .+-..|+.|+.+|.| |..|..||++
T Consensus 17 ~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~ 65 (81)
T 2fh0_A 17 PQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNG 65 (81)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 45899999998877 455678889999987 5678888875
No 4
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=51.33 E-value=22 Score=26.47 Aligned_cols=39 Identities=21% Similarity=0.430 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhch-----hhHHHHHHHHHhchh-----hHHHHHHHHH
Q 026969 173 ITARKSLTKILTSK-----DVKATLLELVEQNKI-----NRSLLTLLDE 211 (230)
Q Consensus 173 ~~akerl~kiLtsk-----D~KatlLEMve~nEi-----d~sLlaLLde 211 (230)
-.|++||..|--+| .+-..|+.|+-+|.| |..|..||++
T Consensus 19 ~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~ 67 (80)
T 1eij_A 19 PEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKR 67 (80)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 46899999998877 445578889999988 5778888876
No 5
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=44.54 E-value=29 Score=27.67 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhch-----hhHHHHHHHHHhchh-----hHHHHHHHHH
Q 026969 172 LITARKSLTKILTSK-----DVKATLLELVEQNKI-----NRSLLTLLDE 211 (230)
Q Consensus 172 l~~akerl~kiLtsk-----D~KatlLEMve~nEi-----d~sLlaLLde 211 (230)
+-.|++||..|--+| .+...|+.|+.+|.| |..|..||+.
T Consensus 51 ~peAreRL~rI~lVkPekA~~VE~~Li~lAq~Gql~~kVsE~~Lk~iL~~ 100 (127)
T 2jxn_A 51 EPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNG 100 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCBCHHHHHHHHHH
T ss_pred CHHHHHHHhcccccCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 345889998887765 667788999999988 6678888865
No 6
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=39.76 E-value=39 Score=26.73 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhch-----hhHHHHHHHHHhchh-----hHHHHHHHHH
Q 026969 172 LITARKSLTKILTSK-----DVKATLLELVEQNKI-----NRSLLTLLDE 211 (230)
Q Consensus 172 l~~akerl~kiLtsk-----D~KatlLEMve~nEi-----d~sLlaLLde 211 (230)
+-.|++||..|--+| .+-..|+-|+-+|.| |..|..||+.
T Consensus 48 tpeAreRL~rI~lVKPEkA~~VE~~LI~lAq~Gqi~~kItee~Lk~lL~~ 97 (118)
T 2cru_A 48 DQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKK 97 (118)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCCSCBCHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 446899999988876 555678889999988 5778888876
No 7
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=35.28 E-value=1.4e+02 Score=29.39 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=26.3
Q ss_pred eccCCC--CcCC--CCccchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 026969 34 VQWDPE--GILG--SAQTGHIARLEFKRRLEKDAEAREAFEQHVREEAER 79 (230)
Q Consensus 34 i~wDPE--gl~g--~pqtGhIaRr~f~r~le~dae~~ea~erq~~~e~e~ 79 (230)
|-|=|| |+-+ ...+-.++=-++++|.|.++-.+.++...|-+|.-+
T Consensus 271 II~FPe~Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew~~~hp~~~Ae 320 (551)
T 2b5u_A 271 VIRFPKDSGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDATHPVEAAE 320 (551)
T ss_dssp EEECCGGGCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred EEECCCCCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHhhhcCcHHHHH
Confidence 446676 4444 355666666677777777766555554444433333
No 8
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=31.64 E-value=60 Score=25.66 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhch-----hhHHHHHHHHHhchh-----hHHHHHHHHH
Q 026969 172 LITARKSLTKILTSK-----DVKATLLELVEQNKI-----NRSLLTLLDE 211 (230)
Q Consensus 172 l~~akerl~kiLtsk-----D~KatlLEMve~nEi-----d~sLlaLLde 211 (230)
+-.|++||..|-.+| .+-..|+-|+-+|.| |..|..||+.
T Consensus 51 t~eAreRL~rI~lvkPe~A~~VE~~li~laq~Gql~~ki~e~~L~~lL~~ 100 (116)
T 2hvu_A 51 EPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNG 100 (116)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCBCHHHHHHHHHH
T ss_pred CHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHH
Confidence 345899999988877 445567779999977 4568888865
No 9
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=30.63 E-value=55 Score=24.25 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHhchhhhhh----ccCc--hhhHHHHHHHHHHHHHHHHHH
Q 026969 118 RLNQEFFSHLKFELGQLRFAV----SKTQ--DMEDRLIELEALQKALLEGTE 163 (230)
Q Consensus 118 rLt~~Ff~~L~~ei~~~rfa~----~r~~--~~Edrl~ELEAL~k~l~eg~E 163 (230)
-|++++-++++..+.+=+|+- -++. ..+++-.++++|+..+.+|.+
T Consensus 9 sL~~~l~~~i~~~V~sG~Y~s~SEviR~~lR~l~~re~~l~~Lr~~l~~G~~ 60 (88)
T 3kxe_C 9 VLGDHFQAFIDSQVADGRYGSASEVIRAGLRLLEENEAKLAALRAALIEGEE 60 (88)
T ss_dssp CCCHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 588999999998887777651 1111 223333345666666666653
No 10
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=29.56 E-value=89 Score=26.03 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHhchhhhhhccCch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026969 118 RLNQEFFSHLKFELGQLRFAVSKTQD-----MEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILT 184 (230)
Q Consensus 118 rLt~~Ff~~L~~ei~~~rfa~~r~~~-----~Edrl~ELEAL~k~l~eg~EayDk~~~~l~~akerl~kiLt 184 (230)
.|.++||.-.+.-|..+.-.+.+.++ .+..+.||+.+.+.+.+- -..|+.||++
T Consensus 76 ~LP~dFY~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~~L-------------~~~Ri~KIv~ 134 (171)
T 3anw_B 76 LLPEGLYERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLRDL-------------KLIRFNKILK 134 (171)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHHHH-------------HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Confidence 36677777777777766655554442 133455666666555443 3568888776
No 11
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=27.92 E-value=24 Score=22.24 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=9.2
Q ss_pred eeeeeccCCC-C
Q 026969 30 RISCVQWDPE-G 40 (230)
Q Consensus 30 ~i~~i~wDPE-g 40 (230)
.++-|||||. |
T Consensus 10 H~~Hvg~d~~tG 21 (36)
T 2qme_I 10 HTIHVGFDAVTG 21 (36)
T ss_dssp EEEEECCBTTTT
T ss_pred CeeEcccCCCCC
Confidence 6888999995 6
No 12
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=27.84 E-value=1.4e+02 Score=21.98 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=38.2
Q ss_pred HHHHHHHHHhchhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 122 EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLIT 174 (230)
Q Consensus 122 ~Ff~~L~~ei~~~rfa~~r~~~~Edrl~ELEAL~k~l~eg~EayDk~~~~l~~ 174 (230)
.+++.|+..|+++. ...+|.|..-+...+..+.|+-|..++|--..-.
T Consensus 12 ~~~~~i~~~l~~~~-----~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~ 59 (97)
T 3onj_A 12 TTLEQAKASLAEAP-----SQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNN 59 (97)
T ss_dssp HHHHHHHHHHHHGG-----GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777663 4467899999999999999999999998775433
No 13
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=27.58 E-value=21 Score=24.61 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=10.2
Q ss_pred eeeeeccCCCCcC
Q 026969 30 RISCVQWDPEGIL 42 (230)
Q Consensus 30 ~i~~i~wDPEgl~ 42 (230)
.|+-|||||+.=|
T Consensus 17 Hv~HvG~d~~~gf 29 (59)
T 1cee_B 17 HVSHVGWDPQNGF 29 (59)
T ss_dssp EEEEECCCTTTCC
T ss_pred CcceeccCCCCCc
Confidence 7889999996435
No 14
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=26.70 E-value=1.9e+02 Score=21.50 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=43.3
Q ss_pred HHHHHHHHHhchhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhchh
Q 026969 122 EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSLTKILTSKDVKATLLELVEQNKI 201 (230)
Q Consensus 122 ~Ff~~L~~ei~~~rfa~~r~~~~Edrl~ELEAL~k~l~eg~EayDk~~~~l~~akerl~kiLtskD~KatlLEMve~nEi 201 (230)
+|+..| .+|-++| |..|+-+.|.=-.=++-|.+|+.|=.+.+-..+.+ -++|- .|.+.+++|.+..-|
T Consensus 6 ~~lk~L-~niR~LR-A~arel~le~Lee~leKl~~VveERree~~~~~~~---~~er~-------~Kl~~~~e~l~~~GI 73 (86)
T 3nr7_A 6 EALKIL-NNIRTLR-AQARESTLETLEEMLEKLEVVVNERREEESAAAAE---VEERT-------RKLQQYREMLIADGI 73 (86)
T ss_dssp CHHHHH-TCHHHHH-HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-------HHHHHHHHHHHHTCC
T ss_pred HHHHHH-hhHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-------HHHHHHHHHHHHcCC
Confidence 355444 4577777 45556555553333566666776666655544333 23333 345778999999999
Q ss_pred hHHH
Q 026969 202 NRSL 205 (230)
Q Consensus 202 d~sL 205 (230)
|.+=
T Consensus 74 ~~ee 77 (86)
T 3nr7_A 74 DPNE 77 (86)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8753
No 15
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=23.79 E-value=1.4e+02 Score=22.10 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=34.8
Q ss_pred HHHHHHHHhchhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 123 FFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQAD 171 (230)
Q Consensus 123 Ff~~L~~ei~~~rfa~~r~~~~Edrl~ELEAL~k~l~eg~EayDk~~~~ 171 (230)
.++.|+..|+++. ...+|+|...+...+..+.|+-|..++|--.
T Consensus 17 l~~~i~~kl~~i~-----~~~geerk~~i~~ie~~l~EA~ell~qMelE 60 (102)
T 1vcs_A 17 LTAEITSKIARVP-----RLPPDEKKQMVANVEKQLEEARELLEQMDLE 60 (102)
T ss_dssp HHHHHHHHHHHGG-----GSCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777653 3356889999999999999999999998764
No 16
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=22.88 E-value=1.4e+02 Score=24.53 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=35.3
Q ss_pred cCCCH---HHHHHHHHHhchhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhch
Q 026969 117 PRLNQ---EFFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDN--MQADLITARKSLTKILTSK 186 (230)
Q Consensus 117 PrLt~---~Ff~~L~~ei~~~rfa~~r~~~~Edrl~ELEAL~k~l~eg~EayDk--~~~~l~~akerl~kiLtsk 186 (230)
|-||| -||.+|+..+..-.|. -++.|.+++.++++.++. .+.-..+-..|+.+.+.++
T Consensus 278 pdlnpie~~~~~~lk~~~~~~~~~------------~~~~l~~~i~~~~~~~~~~~~~~~i~~~~~r~~~~i~~~ 340 (345)
T 3hot_A 278 PDLAPSDYHLFASMGHALAEQRFD------------SYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASD 340 (345)
T ss_dssp GGGCHHHHTHHHHHHHHHTTCCCS------------SHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcccccchhhHHHHHHhccccCC------------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 56666 4899999877443321 256777888888875543 2233344456666666543
No 17
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.41 E-value=2.2e+02 Score=20.53 Aligned_cols=39 Identities=23% Similarity=0.197 Sum_probs=28.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 141 TQDMEDRLIELEALQKALLEGTEAYDNMQADLITARKSL 179 (230)
Q Consensus 141 ~~~~Edrl~ELEAL~k~l~eg~EayDk~~~~l~~akerl 179 (230)
+..+|+|+.+||.--.+....++.-++...+--+--.+|
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L 47 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARN 47 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999888888888877776655444333344
No 18
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=22.39 E-value=1.7e+02 Score=21.66 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=34.5
Q ss_pred HHHHHHHHhchhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026969 123 FFSHLKFELGQLRFAVSKTQDMEDRLIELEALQKALLEGTEAYDNMQADL 172 (230)
Q Consensus 123 Ff~~L~~ei~~~rfa~~r~~~~Edrl~ELEAL~k~l~eg~EayDk~~~~l 172 (230)
.++.|+..|+++ ....++|+|...+...+..+.|+-|..++|--..
T Consensus 27 l~~~i~~kl~~i----~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~ 72 (102)
T 2qyw_A 27 LLEDLQGVPERL----LGTAGTEEKKKLVRDFDEKQQEANETLAEMEEEL 72 (102)
T ss_dssp HHHHHHHHHHHH----HTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667665 2222558999999999999999999999987653
No 19
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=22.25 E-value=26 Score=21.85 Aligned_cols=16 Identities=25% Similarity=0.571 Sum_probs=11.7
Q ss_pred eeeeeccCCC-C-cCCCC
Q 026969 30 RISCVQWDPE-G-ILGSA 45 (230)
Q Consensus 30 ~i~~i~wDPE-g-l~g~p 45 (230)
.++-|+|||. | +-|-|
T Consensus 10 H~~Hvg~d~~tG~f~Glp 27 (35)
T 2odb_B 10 HRVHTSFDPKEGKFVGLP 27 (35)
T ss_dssp EEEEEEEETTTTEEESCC
T ss_pred CeeeeeECCCCCcccCCC
Confidence 6888999997 7 44633
Done!