Query 026970
Match_columns 230
No_of_seqs 265 out of 2257
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:10:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 1E-31 2.2E-36 205.4 16.8 179 20-202 1-206 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 2.7E-28 5.8E-33 184.8 18.0 140 20-163 1-140 (196)
3 TIGR00991 3a0901s02IAP34 GTP-b 99.9 3.3E-23 7.1E-28 163.3 16.5 156 14-174 33-189 (313)
4 TIGR00993 3a0901s04IAP86 chlor 99.9 1.8E-21 3.9E-26 165.0 18.1 152 18-173 117-276 (763)
5 cd01853 Toc34_like Toc34-like 99.9 5.3E-21 1.2E-25 148.8 15.1 136 16-154 28-166 (249)
6 COG1159 Era GTPase [General fu 99.9 1.2E-20 2.7E-25 145.9 14.8 124 20-153 7-130 (298)
7 COG1160 Predicted GTPases [Gen 99.8 1.3E-19 2.9E-24 147.5 15.8 141 20-170 4-144 (444)
8 PF01926 MMR_HSR1: 50S ribosom 99.8 6.8E-19 1.5E-23 122.2 13.8 116 21-146 1-116 (116)
9 COG1084 Predicted GTPase [Gene 99.8 1.7E-18 3.7E-23 135.3 14.5 132 11-151 160-294 (346)
10 COG0218 Predicted GTPase [Gene 99.8 7.7E-18 1.7E-22 123.8 16.1 126 16-151 21-149 (200)
11 TIGR00436 era GTP-binding prot 99.8 6.2E-18 1.3E-22 134.1 15.7 120 21-151 2-121 (270)
12 PF02421 FeoB_N: Ferrous iron 99.8 2.3E-18 5E-23 123.9 11.2 120 20-152 1-120 (156)
13 PRK00089 era GTPase Era; Revie 99.8 1.3E-17 2.8E-22 134.0 16.4 122 20-151 6-127 (292)
14 TIGR03598 GTPase_YsxC ribosome 99.8 4.7E-17 1E-21 121.5 16.9 126 16-151 15-143 (179)
15 PRK15494 era GTPase Era; Provi 99.7 8.6E-17 1.9E-21 131.2 16.2 134 19-162 52-185 (339)
16 cd01898 Obg Obg subfamily. Th 99.7 4.4E-17 9.5E-22 120.5 13.3 124 21-151 2-128 (170)
17 cd01897 NOG NOG1 is a nucleola 99.7 8.1E-17 1.8E-21 118.8 14.7 124 20-151 1-127 (168)
18 cd01894 EngA1 EngA1 subfamily. 99.7 4.8E-17 1E-21 118.5 12.8 119 23-151 1-119 (157)
19 cd04163 Era Era subfamily. Er 99.7 1.2E-16 2.7E-21 117.2 15.1 123 19-151 3-125 (168)
20 cd01895 EngA2 EngA2 subfamily. 99.7 2E-16 4.3E-21 117.0 15.7 126 19-152 2-128 (174)
21 PRK12298 obgE GTPase CgtA; Rev 99.7 1.1E-16 2.4E-21 132.3 15.6 125 21-151 161-289 (390)
22 COG1160 Predicted GTPases [Gen 99.7 1.2E-16 2.5E-21 130.5 14.9 137 18-162 177-314 (444)
23 PRK12299 obgE GTPase CgtA; Rev 99.7 2.4E-16 5.2E-21 127.8 16.0 126 20-151 159-285 (335)
24 cd01878 HflX HflX subfamily. 99.7 2.9E-16 6.2E-21 119.7 15.7 128 17-151 39-167 (204)
25 cd04164 trmE TrmE (MnmE, ThdF, 99.7 2.8E-16 6.1E-21 114.3 14.8 120 20-151 2-121 (157)
26 TIGR03594 GTPase_EngA ribosome 99.7 2E-16 4.3E-21 133.6 15.6 121 21-151 1-121 (429)
27 cd01850 CDC_Septin CDC/Septin. 99.7 5.4E-16 1.2E-20 123.0 17.1 126 19-151 4-157 (276)
28 TIGR03156 GTP_HflX GTP-binding 99.7 3.8E-16 8.2E-21 127.6 16.3 127 18-151 188-315 (351)
29 PRK03003 GTP-binding protein D 99.7 3E-16 6.4E-21 133.6 16.3 125 17-151 36-160 (472)
30 PRK00093 GTP-binding protein D 99.7 1.5E-15 3.3E-20 128.5 20.5 128 17-151 171-298 (435)
31 TIGR03594 GTPase_EngA ribosome 99.7 2.2E-15 4.8E-20 127.3 20.9 126 18-150 171-296 (429)
32 PRK00093 GTP-binding protein D 99.7 3.3E-16 7.1E-21 132.5 15.8 122 20-151 2-123 (435)
33 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 5.6E-16 1.2E-20 114.2 14.5 114 20-151 1-116 (168)
34 TIGR02729 Obg_CgtA Obg family 99.7 5.7E-16 1.2E-20 125.5 15.3 126 20-151 158-287 (329)
35 cd04171 SelB SelB subfamily. 99.7 1E-15 2.2E-20 112.3 15.4 116 21-151 2-118 (164)
36 PF00735 Septin: Septin; Inte 99.7 5.2E-16 1.1E-20 122.9 14.2 133 19-160 4-163 (281)
37 PRK00454 engB GTP-binding prot 99.7 2.4E-15 5.2E-20 113.8 17.1 125 17-151 22-149 (196)
38 PRK03003 GTP-binding protein D 99.7 3.9E-15 8.6E-20 126.8 20.1 125 18-151 210-336 (472)
39 cd04119 RJL RJL (RabJ-Like) su 99.7 8.7E-16 1.9E-20 113.1 14.0 119 20-151 1-124 (168)
40 PRK12297 obgE GTPase CgtA; Rev 99.7 1.3E-15 2.7E-20 126.7 16.0 124 21-150 160-287 (424)
41 cd01864 Rab19 Rab19 subfamily. 99.7 2.9E-15 6.3E-20 110.3 15.5 118 19-152 3-123 (165)
42 cd04124 RabL2 RabL2 subfamily. 99.7 1.6E-15 3.4E-20 111.3 13.9 113 20-150 1-117 (161)
43 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.3E-15 2.7E-20 114.9 13.1 117 19-151 2-132 (195)
44 cd01866 Rab2 Rab2 subfamily. 99.7 1.8E-15 4E-20 111.7 13.8 117 20-151 5-123 (168)
45 PRK11058 GTPase HflX; Provisio 99.7 2.1E-15 4.5E-20 126.1 15.4 125 20-151 198-323 (426)
46 KOG0084 GTPase Rab1/YPT1, smal 99.7 1.1E-15 2.3E-20 111.2 11.8 130 18-163 8-143 (205)
47 COG3596 Predicted GTPase [Gene 99.7 3.3E-16 7.3E-21 119.9 9.7 128 16-152 36-163 (296)
48 cd01861 Rab6 Rab6 subfamily. 99.7 3.6E-15 7.9E-20 109.2 14.9 115 21-151 2-119 (161)
49 COG0486 ThdF Predicted GTPase 99.7 1.6E-15 3.4E-20 124.3 13.7 125 17-152 215-339 (454)
50 PRK12296 obgE GTPase CgtA; Rev 99.7 2.9E-15 6.3E-20 126.2 15.6 125 20-151 160-298 (500)
51 TIGR00450 mnmE_trmE_thdF tRNA 99.7 3.4E-15 7.3E-20 125.5 15.6 123 18-151 202-324 (442)
52 cd01881 Obg_like The Obg-like 99.7 1.2E-15 2.7E-20 113.2 11.7 122 24-151 1-134 (176)
53 cd04109 Rab28 Rab28 subfamily. 99.7 2.7E-15 5.9E-20 115.2 13.7 119 20-151 1-123 (215)
54 cd04110 Rab35 Rab35 subfamily. 99.7 6.2E-16 1.4E-20 117.4 10.0 117 19-151 6-124 (199)
55 PRK09518 bifunctional cytidyla 99.7 5.7E-15 1.2E-19 131.4 17.5 124 18-151 274-397 (712)
56 cd01865 Rab3 Rab3 subfamily. 99.7 4.3E-15 9.4E-20 109.4 14.0 117 20-151 2-120 (165)
57 cd01867 Rab8_Rab10_Rab13_like 99.7 4.2E-15 9E-20 109.7 14.0 118 19-151 3-122 (167)
58 cd04104 p47_IIGP_like p47 (47- 99.7 2.3E-15 5E-20 114.0 12.7 117 20-151 2-121 (197)
59 cd04122 Rab14 Rab14 subfamily. 99.7 5.1E-15 1.1E-19 109.1 14.2 114 20-151 3-121 (166)
60 PF00009 GTP_EFTU: Elongation 99.7 1.4E-15 3E-20 114.4 11.4 117 18-150 2-135 (188)
61 cd04142 RRP22 RRP22 subfamily. 99.7 4.9E-15 1.1E-19 112.2 14.4 126 20-151 1-130 (198)
62 cd04140 ARHI_like ARHI subfami 99.7 2.8E-15 6.2E-20 110.4 12.8 119 20-151 2-122 (165)
63 cd01886 EF-G Elongation factor 99.7 2.2E-15 4.8E-20 119.0 12.9 116 21-153 1-132 (270)
64 cd00881 GTP_translation_factor 99.7 2.4E-15 5.2E-20 112.9 12.6 114 21-151 1-128 (189)
65 cd04113 Rab4 Rab4 subfamily. 99.7 3.8E-15 8.3E-20 109.1 13.4 117 20-151 1-119 (161)
66 PRK04213 GTP-binding protein; 99.7 9.3E-15 2E-19 111.1 15.9 122 18-151 8-144 (201)
67 cd04160 Arfrp1 Arfrp1 subfamil 99.7 2.3E-15 5.1E-20 110.9 12.1 117 21-151 1-121 (167)
68 cd01891 TypA_BipA TypA (tyrosi 99.6 6.5E-15 1.4E-19 111.3 14.5 115 20-151 3-131 (194)
69 cd01868 Rab11_like Rab11-like. 99.6 8.6E-15 1.9E-19 107.7 14.8 116 20-151 4-122 (165)
70 cd04157 Arl6 Arl6 subfamily. 99.6 3.8E-15 8.2E-20 109.1 12.5 116 21-151 1-118 (162)
71 cd04166 CysN_ATPS CysN_ATPS su 99.6 4.8E-15 1.1E-19 113.2 13.5 115 21-151 1-144 (208)
72 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 5.6E-15 1.2E-19 112.3 13.6 116 20-150 1-123 (201)
73 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 6.8E-15 1.5E-19 108.4 13.6 117 20-151 3-121 (166)
74 cd04145 M_R_Ras_like M-Ras/R-R 99.6 7E-15 1.5E-19 107.9 13.6 117 19-151 2-121 (164)
75 cd04154 Arl2 Arl2 subfamily. 99.6 1E-14 2.2E-19 108.3 14.5 118 16-151 11-129 (173)
76 cd04120 Rab12 Rab12 subfamily. 99.6 8.6E-15 1.9E-19 111.0 14.1 115 21-151 2-119 (202)
77 COG5019 CDC3 Septin family pro 99.6 1E-14 2.2E-19 116.1 14.6 128 17-151 21-176 (373)
78 cd04136 Rap_like Rap-like subf 99.6 8.2E-15 1.8E-19 107.5 13.3 116 20-151 2-120 (163)
79 cd01879 FeoB Ferrous iron tran 99.6 6.1E-15 1.3E-19 107.5 12.5 115 24-151 1-115 (158)
80 cd04168 TetM_like Tet(M)-like 99.6 6.1E-15 1.3E-19 114.6 13.0 116 21-153 1-132 (237)
81 PRK05291 trmE tRNA modificatio 99.6 7.1E-15 1.5E-19 124.1 14.5 122 18-151 214-335 (449)
82 smart00175 RAB Rab subfamily o 99.6 1.9E-14 4.1E-19 105.6 15.0 116 20-151 1-119 (164)
83 cd04127 Rab27A Rab27a subfamil 99.6 1.4E-14 3.1E-19 108.1 14.5 119 19-151 4-134 (180)
84 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.3E-14 2.9E-19 106.7 13.9 112 22-151 2-113 (164)
85 cd01863 Rab18 Rab18 subfamily. 99.6 7.3E-15 1.6E-19 107.6 12.5 117 20-150 1-119 (161)
86 cd00154 Rab Rab family. Rab G 99.6 1.1E-14 2.4E-19 105.9 13.3 114 20-150 1-118 (159)
87 cd04121 Rab40 Rab40 subfamily. 99.6 3.6E-14 7.7E-19 106.6 16.4 117 18-151 5-124 (189)
88 TIGR00487 IF-2 translation ini 99.6 1.2E-14 2.5E-19 125.8 15.5 127 17-161 85-211 (587)
89 cd00877 Ran Ran (Ras-related n 99.6 6.1E-15 1.3E-19 108.8 11.9 114 20-151 1-118 (166)
90 cd01860 Rab5_related Rab5-rela 99.6 1.6E-14 3.5E-19 106.0 14.1 118 20-151 2-120 (163)
91 cd04144 Ras2 Ras2 subfamily. 99.6 6.1E-15 1.3E-19 111.2 11.9 116 21-151 1-120 (190)
92 cd04138 H_N_K_Ras_like H-Ras/N 99.6 1.1E-14 2.3E-19 106.6 12.9 115 20-151 2-120 (162)
93 cd04161 Arl2l1_Arl13_like Arl2 99.6 2.1E-14 4.6E-19 106.0 14.5 113 21-151 1-114 (167)
94 cd01876 YihA_EngB The YihA (En 99.6 3.2E-14 6.9E-19 104.6 15.5 120 22-151 2-124 (170)
95 PRK09518 bifunctional cytidyla 99.6 6.5E-14 1.4E-18 124.7 20.1 125 18-151 449-575 (712)
96 smart00173 RAS Ras subfamily o 99.6 1.2E-14 2.6E-19 106.7 13.0 116 21-151 2-119 (164)
97 cd04158 ARD1 ARD1 subfamily. 99.6 1.5E-14 3.3E-19 107.0 13.3 112 21-151 1-114 (169)
98 cd04149 Arf6 Arf6 subfamily. 99.6 3.7E-14 8E-19 104.8 15.4 114 19-151 9-124 (168)
99 cd01893 Miro1 Miro1 subfamily. 99.6 1.1E-14 2.3E-19 107.4 12.4 114 21-151 2-117 (166)
100 cd01890 LepA LepA subfamily. 99.6 9.8E-15 2.1E-19 108.8 12.2 116 20-151 1-133 (179)
101 cd04112 Rab26 Rab26 subfamily. 99.6 2.2E-14 4.9E-19 108.2 14.2 117 20-151 1-120 (191)
102 PLN03071 GTP-binding nuclear p 99.6 1.3E-14 2.8E-19 111.7 13.0 117 17-151 11-131 (219)
103 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.9E-14 4E-19 106.5 13.4 119 20-151 3-123 (170)
104 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 2.1E-14 4.4E-19 106.6 13.6 115 20-151 3-121 (172)
105 smart00177 ARF ARF-like small 99.6 1.7E-14 3.6E-19 107.4 13.1 114 19-151 13-128 (175)
106 cd04125 RabA_like RabA-like su 99.6 9.3E-15 2E-19 109.9 11.7 117 20-151 1-119 (188)
107 cd04106 Rab23_lke Rab23-like s 99.6 2.5E-14 5.5E-19 104.8 13.7 113 21-151 2-120 (162)
108 cd01862 Rab7 Rab7 subfamily. 99.6 1.7E-14 3.7E-19 106.7 12.8 118 20-151 1-123 (172)
109 cd04175 Rap1 Rap1 subgroup. T 99.6 1.5E-14 3.3E-19 106.3 12.4 116 20-151 2-120 (164)
110 cd04156 ARLTS1 ARLTS1 subfamil 99.6 2.3E-14 5E-19 104.8 13.3 113 21-151 1-115 (160)
111 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 3.3E-14 7.1E-19 105.7 14.3 114 19-151 15-130 (174)
112 smart00178 SAR Sar1p-like memb 99.6 6.1E-14 1.3E-18 105.2 15.8 116 17-151 15-132 (184)
113 cd04101 RabL4 RabL4 (Rab-like4 99.6 2.4E-14 5.3E-19 105.1 13.4 115 20-151 1-121 (164)
114 cd04169 RF3 RF3 subfamily. Pe 99.6 2.3E-14 4.9E-19 113.2 14.0 117 20-153 3-139 (267)
115 PLN03118 Rab family protein; P 99.6 3.6E-14 7.8E-19 108.7 14.6 121 16-151 11-134 (211)
116 cd04123 Rab21 Rab21 subfamily. 99.6 3.3E-14 7.1E-19 104.0 13.8 117 20-151 1-119 (162)
117 CHL00071 tufA elongation facto 99.6 1.8E-14 3.8E-19 120.6 13.8 120 16-151 9-142 (409)
118 cd04111 Rab39 Rab39 subfamily. 99.6 2.1E-14 4.6E-19 109.9 13.1 119 19-151 2-123 (211)
119 cd04131 Rnd Rnd subfamily. Th 99.6 1.6E-14 3.4E-19 107.7 12.1 114 20-151 2-119 (178)
120 PRK05306 infB translation init 99.6 2.5E-14 5.5E-19 126.7 15.4 116 17-151 288-403 (787)
121 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1.8E-14 4E-19 107.6 12.4 117 17-151 3-123 (182)
122 cd04116 Rab9 Rab9 subfamily. 99.6 3.3E-14 7.2E-19 105.1 13.6 121 18-151 4-128 (170)
123 cd04126 Rab20 Rab20 subfamily. 99.6 2.4E-14 5.1E-19 109.9 13.1 113 20-151 1-114 (220)
124 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.3E-14 5E-19 106.1 12.7 115 21-151 2-120 (170)
125 cd00880 Era_like Era (E. coli 99.6 5.8E-14 1.3E-18 101.9 14.7 118 24-151 1-118 (163)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.6 2.5E-14 5.3E-19 104.5 12.7 113 21-151 1-114 (158)
127 KOG1423 Ras-like GTPase ERA [C 99.6 1.3E-14 2.8E-19 112.5 11.5 129 17-151 70-199 (379)
128 PLN03110 Rab GTPase; Provision 99.6 5.3E-14 1.1E-18 108.1 15.0 119 18-151 11-131 (216)
129 cd01889 SelB_euk SelB subfamil 99.6 2.9E-14 6.3E-19 107.6 13.2 116 20-151 1-134 (192)
130 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 3.7E-14 8E-19 106.2 13.6 118 19-151 3-123 (183)
131 PTZ00369 Ras-like protein; Pro 99.6 2.7E-14 5.9E-19 107.5 12.9 117 19-151 5-124 (189)
132 cd00157 Rho Rho (Ras homology) 99.6 1.8E-14 3.8E-19 106.5 11.7 116 20-152 1-119 (171)
133 cd04155 Arl3 Arl3 subfamily. 99.6 7E-14 1.5E-18 103.6 14.9 117 17-151 12-129 (173)
134 cd04117 Rab15 Rab15 subfamily. 99.6 2.8E-14 6.1E-19 104.7 12.6 113 21-151 2-119 (161)
135 cd04176 Rap2 Rap2 subgroup. T 99.6 2.8E-14 6.1E-19 104.7 12.5 116 20-151 2-120 (163)
136 cd04150 Arf1_5_like Arf1-Arf5- 99.6 5.5E-14 1.2E-18 102.9 14.0 112 21-151 2-115 (159)
137 cd04151 Arl1 Arl1 subfamily. 99.6 4.2E-14 9E-19 103.4 13.3 112 21-151 1-114 (158)
138 cd04159 Arl10_like Arl10-like 99.6 5.9E-14 1.3E-18 102.0 13.7 112 22-151 2-115 (159)
139 cd04102 RabL3 RabL3 (Rab-like3 99.6 5.3E-14 1.1E-18 106.6 13.7 116 21-151 2-143 (202)
140 PLN00223 ADP-ribosylation fact 99.6 1.5E-13 3.3E-18 102.7 16.1 116 17-151 15-132 (181)
141 PF08477 Miro: Miro-like prote 99.6 4.1E-15 8.9E-20 103.5 7.1 116 21-148 1-119 (119)
142 PTZ00133 ADP-ribosylation fact 99.6 1.3E-13 2.8E-18 103.2 15.7 115 18-151 16-132 (182)
143 cd01896 DRG The developmentall 99.6 1.2E-13 2.5E-18 107.2 15.8 88 21-115 2-89 (233)
144 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 4.5E-14 9.9E-19 102.5 12.4 118 20-153 23-144 (221)
145 cd04134 Rho3 Rho3 subfamily. 99.6 2.1E-14 4.6E-19 108.1 11.3 114 20-151 1-118 (189)
146 cd00879 Sar1 Sar1 subfamily. 99.6 9.5E-14 2E-18 104.6 14.8 127 17-162 17-146 (190)
147 CHL00189 infB translation init 99.6 4.9E-14 1.1E-18 123.9 15.1 117 17-151 242-361 (742)
148 cd04146 RERG_RasL11_like RERG/ 99.6 2.4E-14 5.3E-19 105.3 11.3 117 21-151 1-120 (165)
149 cd04132 Rho4_like Rho4-like su 99.6 4.1E-14 8.9E-19 106.3 12.7 114 20-151 1-119 (187)
150 cd01874 Cdc42 Cdc42 subfamily. 99.6 7E-14 1.5E-18 104.0 13.8 113 20-151 2-119 (175)
151 COG2262 HflX GTPases [General 99.6 7.4E-14 1.6E-18 112.7 14.7 129 16-151 189-318 (411)
152 KOG2655 Septin family protein 99.6 3.4E-14 7.4E-19 113.9 12.7 129 17-151 19-172 (366)
153 KOG0080 GTPase Rab18, small G 99.6 2.8E-14 6.1E-19 100.3 10.6 127 19-159 11-139 (209)
154 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 5.6E-14 1.2E-18 108.5 13.4 116 18-151 12-131 (232)
155 cd01888 eIF2_gamma eIF2-gamma 99.6 6.2E-14 1.3E-18 106.7 13.3 117 20-151 1-151 (203)
156 cd04105 SR_beta Signal recogni 99.6 1.1E-13 2.4E-18 105.2 14.6 115 20-151 1-123 (203)
157 PRK12317 elongation factor 1-a 99.6 3.5E-14 7.6E-19 119.7 13.0 120 16-151 3-153 (425)
158 cd04114 Rab30 Rab30 subfamily. 99.6 1.2E-13 2.6E-18 101.9 14.4 117 19-151 7-126 (169)
159 smart00174 RHO Rho (Ras homolo 99.6 3.9E-14 8.5E-19 105.1 11.8 111 22-151 1-116 (174)
160 KOG0092 GTPase Rab5/YPT51 and 99.6 2.3E-14 5E-19 103.9 10.1 122 18-153 4-126 (200)
161 cd04118 Rab24 Rab24 subfamily. 99.6 6.5E-14 1.4E-18 105.7 13.0 114 20-151 1-119 (193)
162 cd04148 RGK RGK subfamily. Th 99.6 5.5E-14 1.2E-18 108.3 12.8 118 20-152 1-121 (221)
163 KOG0098 GTPase Rab2, small G p 99.6 2.3E-13 5E-18 98.1 14.8 131 19-163 6-140 (216)
164 cd04177 RSR1 RSR1 subgroup. R 99.6 9E-14 1.9E-18 102.7 13.2 116 20-151 2-120 (168)
165 cd04170 EF-G_bact Elongation f 99.6 3.8E-14 8.3E-19 112.4 12.0 115 21-152 1-131 (268)
166 cd04133 Rop_like Rop subfamily 99.6 6.7E-14 1.5E-18 104.0 12.3 113 20-151 2-119 (176)
167 PLN03108 Rab family protein; P 99.6 1.5E-13 3.2E-18 105.2 14.2 117 19-151 6-125 (210)
168 cd04139 RalA_RalB RalA/RalB su 99.6 1.1E-13 2.4E-18 101.5 12.9 117 20-151 1-119 (164)
169 smart00053 DYNc Dynamin, GTPas 99.6 3.8E-13 8.1E-18 103.9 16.2 140 18-163 25-217 (240)
170 KOG1489 Predicted GTP-binding 99.6 5.2E-14 1.1E-18 109.7 11.4 126 20-151 197-326 (366)
171 cd01871 Rac1_like Rac1-like su 99.6 8.5E-14 1.9E-18 103.4 12.2 113 20-151 2-119 (174)
172 cd01892 Miro2 Miro2 subfamily. 99.6 1.8E-13 3.9E-18 101.2 13.9 118 18-151 3-122 (169)
173 PRK12735 elongation factor Tu; 99.6 1.3E-13 2.9E-18 114.9 14.6 119 17-151 10-142 (396)
174 cd04147 Ras_dva Ras-dva subfam 99.6 8.9E-14 1.9E-18 105.5 12.5 115 21-151 1-118 (198)
175 PRK15467 ethanolamine utilizat 99.6 4.5E-14 9.7E-19 103.2 10.3 115 20-162 2-116 (158)
176 KOG1547 Septin CDC10 and relat 99.6 1.9E-13 4.1E-18 102.7 13.6 126 19-151 46-198 (336)
177 PRK09554 feoB ferrous iron tra 99.6 1.4E-13 3E-18 122.5 15.3 122 19-151 3-126 (772)
178 cd01875 RhoG RhoG subfamily. 99.6 9E-14 2E-18 104.8 12.1 114 19-151 3-121 (191)
179 PRK10512 selenocysteinyl-tRNA- 99.5 2.1E-13 4.5E-18 118.9 15.8 116 21-151 2-118 (614)
180 cd00876 Ras Ras family. The R 99.5 8.6E-14 1.9E-18 101.5 11.5 115 21-151 1-118 (160)
181 TIGR02528 EutP ethanolamine ut 99.5 3.8E-14 8.3E-19 101.7 9.4 101 21-151 2-102 (142)
182 cd01885 EF2 EF2 (for archaea a 99.5 8.7E-14 1.9E-18 106.7 11.8 115 20-150 1-138 (222)
183 KOG0079 GTP-binding protein H- 99.5 2.5E-13 5.4E-18 94.3 12.7 148 20-183 9-161 (198)
184 KOG0087 GTPase Rab11/YPT3, sma 99.5 6.1E-14 1.3E-18 103.1 10.1 118 17-151 12-133 (222)
185 PF00350 Dynamin_N: Dynamin fa 99.5 6.4E-14 1.4E-18 103.4 10.4 113 22-147 1-168 (168)
186 TIGR00491 aIF-2 translation in 99.5 9.2E-14 2E-18 120.2 12.6 115 19-151 4-135 (590)
187 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 1.7E-13 3.7E-18 105.2 12.8 114 20-151 2-119 (222)
188 cd04137 RheB Rheb (Ras Homolog 99.5 9.3E-14 2E-18 103.7 11.0 117 20-151 2-120 (180)
189 TIGR00475 selB selenocysteine- 99.5 3.3E-13 7.1E-18 117.3 15.9 115 21-151 2-117 (581)
190 cd04128 Spg1 Spg1p. Spg1p (se 99.5 1.3E-13 2.8E-18 103.2 11.6 113 20-151 1-118 (182)
191 cd04143 Rhes_like Rhes_like su 99.5 1.7E-13 3.8E-18 107.1 12.7 116 21-151 2-127 (247)
192 TIGR00231 small_GTP small GTP- 99.5 3.4E-13 7.4E-18 97.7 13.6 116 20-151 2-122 (161)
193 PLN03127 Elongation factor Tu; 99.5 1.7E-13 3.6E-18 115.4 13.5 120 16-151 58-191 (447)
194 PLN00023 GTP-binding protein; 99.5 2.2E-13 4.8E-18 108.6 13.3 122 15-151 17-165 (334)
195 cd04135 Tc10 TC10 subfamily. 99.5 2.3E-13 5E-18 100.9 12.7 113 20-151 1-118 (174)
196 TIGR00484 EF-G translation elo 99.5 2.4E-13 5.2E-18 120.8 14.9 121 16-153 7-143 (689)
197 PRK00049 elongation factor Tu; 99.5 2.1E-13 4.6E-18 113.7 13.6 118 17-151 10-142 (396)
198 TIGR01394 TypA_BipA GTP-bindin 99.5 1.7E-13 3.8E-18 118.9 13.5 115 20-151 2-130 (594)
199 PRK12736 elongation factor Tu; 99.5 3.1E-13 6.7E-18 112.7 14.4 119 17-151 10-142 (394)
200 cd04167 Snu114p Snu114p subfam 99.5 1.3E-13 2.7E-18 105.8 11.0 115 20-150 1-136 (213)
201 PF10662 PduV-EutP: Ethanolami 99.5 7.3E-14 1.6E-18 98.5 8.7 114 20-163 2-117 (143)
202 cd01870 RhoA_like RhoA-like su 99.5 2.3E-13 5.1E-18 101.0 12.0 114 20-151 2-119 (175)
203 COG0536 Obg Predicted GTPase [ 99.5 2.5E-13 5.5E-18 107.0 12.5 124 21-151 161-289 (369)
204 TIGR00485 EF-Tu translation el 99.5 2.4E-13 5.2E-18 113.4 13.1 119 17-151 10-142 (394)
205 cd04130 Wrch_1 Wrch-1 subfamil 99.5 1.8E-13 4E-18 101.5 11.1 113 20-151 1-118 (173)
206 PRK00007 elongation factor G; 99.5 2.2E-13 4.8E-18 120.9 13.3 121 16-153 7-143 (693)
207 PLN03126 Elongation factor Tu; 99.5 3.2E-13 6.9E-18 114.4 13.4 120 16-151 78-211 (478)
208 KOG1145 Mitochondrial translat 99.5 2.5E-13 5.4E-18 112.7 12.1 180 17-229 151-331 (683)
209 KOG0095 GTPase Rab30, small G 99.5 4E-12 8.7E-17 88.4 16.1 115 20-151 8-126 (213)
210 PRK12739 elongation factor G; 99.5 5.6E-13 1.2E-17 118.4 14.9 119 17-152 6-140 (691)
211 PRK10218 GTP-binding protein; 99.5 7.4E-13 1.6E-17 114.9 15.0 117 19-152 5-135 (607)
212 KOG0078 GTP-binding protein SE 99.5 5E-13 1.1E-17 98.6 11.9 121 15-151 8-131 (207)
213 PRK05124 cysN sulfate adenylyl 99.5 3.2E-13 7E-18 114.7 12.4 121 15-151 23-174 (474)
214 TIGR00503 prfC peptide chain r 99.5 6.5E-13 1.4E-17 113.9 14.0 124 17-157 9-152 (527)
215 KOG1490 GTP-binding protein CR 99.5 5.8E-14 1.3E-18 115.3 7.1 134 11-152 160-296 (620)
216 cd01883 EF1_alpha Eukaryotic e 99.5 6.9E-13 1.5E-17 102.1 12.5 115 21-151 1-151 (219)
217 PF00025 Arf: ADP-ribosylation 99.5 8.6E-13 1.9E-17 98.1 12.5 116 17-151 12-129 (175)
218 PRK00741 prfC peptide chain re 99.5 7.8E-13 1.7E-17 113.4 13.7 120 17-153 8-147 (526)
219 PRK04004 translation initiatio 99.5 7.1E-13 1.5E-17 115.0 13.0 115 18-150 5-136 (586)
220 PRK09866 hypothetical protein; 99.5 1.6E-12 3.6E-17 110.9 14.7 85 69-162 230-317 (741)
221 smart00176 RAN Ran (Ras-relate 99.5 4.8E-13 1E-17 101.4 10.3 109 25-151 1-113 (200)
222 PRK05506 bifunctional sulfate 99.5 9.1E-13 2E-17 116.1 13.5 120 16-151 21-171 (632)
223 PF00071 Ras: Ras family; Int 99.5 3.1E-13 6.7E-18 99.0 8.8 115 21-151 1-118 (162)
224 cd00882 Ras_like_GTPase Ras-li 99.5 6.4E-13 1.4E-17 95.4 10.3 114 24-152 1-117 (157)
225 KOG1191 Mitochondrial GTPase [ 99.5 7.7E-13 1.7E-17 108.7 11.7 130 18-152 267-404 (531)
226 PF09439 SRPRB: Signal recogni 99.5 8.2E-13 1.8E-17 97.3 10.8 120 19-152 3-127 (181)
227 COG0370 FeoB Fe2+ transport sy 99.5 8.4E-13 1.8E-17 112.9 12.1 118 20-152 4-123 (653)
228 PTZ00132 GTP-binding nuclear p 99.5 1.6E-12 3.5E-17 99.9 12.7 117 17-151 7-127 (215)
229 TIGR02034 CysN sulfate adenyly 99.5 1.2E-12 2.7E-17 109.4 12.9 116 20-151 1-147 (406)
230 cd04129 Rho2 Rho2 subfamily. 99.5 1.5E-12 3.3E-17 97.8 12.2 113 20-151 2-119 (187)
231 COG2229 Predicted GTPase [Gene 99.5 5.7E-12 1.2E-16 91.1 14.3 131 18-163 9-148 (187)
232 TIGR01393 lepA GTP-binding pro 99.5 1.2E-12 2.6E-17 113.9 13.1 117 19-151 3-136 (595)
233 cd04165 GTPBP1_like GTPBP1-lik 99.4 3.5E-12 7.7E-17 98.2 14.0 117 21-151 1-152 (224)
234 TIGR00483 EF-1_alpha translati 99.4 1.8E-12 3.8E-17 109.4 13.4 119 17-151 5-155 (426)
235 cd04103 Centaurin_gamma Centau 99.4 2.1E-12 4.6E-17 94.4 11.9 109 20-150 1-112 (158)
236 PRK13351 elongation factor G; 99.4 1.5E-12 3.2E-17 115.9 13.0 120 17-153 6-141 (687)
237 PF05049 IIGP: Interferon-indu 99.4 2.4E-12 5.1E-17 104.7 12.8 117 18-149 34-153 (376)
238 cd01873 RhoBTB RhoBTB subfamil 99.4 3.8E-12 8.2E-17 96.2 11.9 117 19-151 2-134 (195)
239 PRK05433 GTP-binding protein L 99.4 3.8E-12 8.3E-17 110.9 13.5 118 18-151 6-140 (600)
240 KOG0093 GTPase Rab3, small G p 99.4 2.6E-11 5.7E-16 84.2 14.8 122 17-153 19-142 (193)
241 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 7.8E-12 1.7E-16 96.1 13.2 124 21-151 1-125 (232)
242 PTZ00141 elongation factor 1- 99.4 6E-12 1.3E-16 106.3 13.5 117 17-149 5-157 (446)
243 COG1100 GTPase SAR1 and relate 99.4 2E-11 4.2E-16 94.0 14.6 116 20-152 6-126 (219)
244 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.2E-11 2.7E-16 95.4 13.4 112 16-151 36-147 (225)
245 TIGR03680 eif2g_arch translati 99.4 6.9E-12 1.5E-16 105.0 12.7 119 18-151 3-148 (406)
246 KOG0073 GTP-binding ADP-ribosy 99.4 1.7E-11 3.7E-16 86.7 12.5 114 19-151 16-131 (185)
247 PRK04000 translation initiatio 99.4 9.5E-12 2.1E-16 104.2 13.4 122 15-151 5-153 (411)
248 COG0532 InfB Translation initi 99.4 1.3E-11 2.8E-16 102.9 13.9 127 18-162 4-132 (509)
249 KOG0394 Ras-related GTPase [Ge 99.4 3.6E-12 7.7E-17 91.9 8.8 120 17-151 7-132 (210)
250 TIGR00437 feoB ferrous iron tr 99.4 1.2E-11 2.5E-16 107.8 12.8 113 26-151 1-113 (591)
251 PTZ00416 elongation factor 2; 99.4 3.8E-12 8.3E-17 114.9 10.0 119 16-150 16-157 (836)
252 PTZ00258 GTP-binding protein; 99.3 1.1E-11 2.3E-16 101.9 11.5 93 16-114 18-126 (390)
253 cd01900 YchF YchF subfamily. 99.3 7.9E-12 1.7E-16 98.5 10.0 87 22-114 1-103 (274)
254 TIGR00490 aEF-2 translation el 99.3 5.1E-12 1.1E-16 112.7 9.9 118 17-151 17-152 (720)
255 PLN00116 translation elongatio 99.3 1.1E-11 2.3E-16 112.2 11.4 120 15-150 15-163 (843)
256 KOG0088 GTPase Rab21, small G 99.3 3.2E-12 7E-17 89.8 6.0 153 18-184 12-168 (218)
257 PRK09601 GTP-binding protein Y 99.3 1.7E-11 3.7E-16 99.7 11.1 89 20-114 3-107 (364)
258 KOG0086 GTPase Rab4, small G p 99.3 3.5E-11 7.7E-16 84.1 10.9 122 20-158 10-135 (214)
259 KOG0091 GTPase Rab39, small G 99.3 2.9E-11 6.2E-16 85.5 9.5 123 19-152 8-131 (213)
260 PTZ00327 eukaryotic translatio 99.3 7.5E-11 1.6E-15 99.5 12.9 121 16-151 31-185 (460)
261 TIGR02836 spore_IV_A stage IV 99.3 1.1E-10 2.5E-15 95.1 13.0 131 16-151 14-194 (492)
262 COG5256 TEF1 Translation elong 99.3 1.2E-10 2.6E-15 94.4 13.1 129 16-160 4-168 (428)
263 KOG1707 Predicted Ras related/ 99.3 8.4E-11 1.8E-15 98.6 12.2 122 17-153 7-131 (625)
264 PLN00043 elongation factor 1-a 99.2 1.3E-10 2.8E-15 98.2 12.6 118 17-150 5-158 (447)
265 KOG0395 Ras-related GTPase [Ge 99.2 1.2E-10 2.6E-15 87.8 10.9 118 19-152 3-123 (196)
266 PRK07560 elongation factor EF- 99.2 5.7E-11 1.2E-15 106.3 10.3 120 16-151 17-153 (731)
267 PRK12740 elongation factor G; 99.2 1.2E-10 2.6E-15 103.6 11.9 112 25-153 1-128 (668)
268 KOG0462 Elongation factor-type 99.2 1.8E-10 3.8E-15 96.1 11.5 130 17-162 58-202 (650)
269 COG0480 FusA Translation elong 99.2 1.2E-10 2.7E-15 102.1 11.2 120 17-153 8-144 (697)
270 COG1163 DRG Predicted GTPase [ 99.2 4.9E-11 1.1E-15 93.6 7.3 90 20-116 64-153 (365)
271 PRK09602 translation-associate 99.2 2.4E-10 5.2E-15 94.9 11.5 89 20-114 2-113 (396)
272 cd01851 GBP Guanylate-binding 99.2 1.6E-09 3.5E-14 83.5 15.3 94 18-114 6-102 (224)
273 cd01899 Ygr210 Ygr210 subfamil 99.2 2.8E-10 6E-15 91.9 10.8 87 22-114 1-110 (318)
274 cd01858 NGP_1 NGP-1. Autoanti 99.2 8.1E-11 1.7E-15 85.9 7.1 57 18-79 101-157 (157)
275 COG1217 TypA Predicted membran 99.2 3.4E-10 7.5E-15 92.8 10.9 119 19-154 5-137 (603)
276 KOG1954 Endocytosis/signaling 99.2 2.3E-09 4.9E-14 85.7 15.1 134 17-157 56-229 (532)
277 PF03193 DUF258: Protein of un 99.1 3.7E-11 8.1E-16 86.8 3.8 62 20-85 36-103 (161)
278 KOG2486 Predicted GTPase [Gene 99.1 6E-10 1.3E-14 85.8 10.4 127 16-151 133-262 (320)
279 cd04178 Nucleostemin_like Nucl 99.1 2.3E-10 5E-15 84.5 6.9 56 19-79 117-172 (172)
280 KOG3859 Septins (P-loop GTPase 99.1 3.9E-10 8.4E-15 86.8 8.2 128 18-151 41-190 (406)
281 KOG0393 Ras-related small GTPa 99.1 3.1E-10 6.6E-15 84.2 7.2 115 19-151 4-123 (198)
282 KOG0097 GTPase Rab14, small G 99.1 1.9E-09 4.1E-14 74.5 10.3 123 19-158 11-137 (215)
283 KOG0071 GTP-binding ADP-ribosy 99.1 6.5E-09 1.4E-13 71.9 12.7 126 18-162 16-144 (180)
284 KOG0074 GTP-binding ADP-ribosy 99.1 9.6E-10 2.1E-14 76.0 8.5 120 14-151 12-133 (185)
285 KOG0090 Signal recognition par 99.1 3.6E-09 7.8E-14 78.5 11.3 119 19-152 38-160 (238)
286 KOG0410 Predicted GTP binding 99.0 1.1E-09 2.3E-14 86.2 8.5 129 18-151 177-308 (410)
287 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 7.8E-10 1.7E-14 79.2 7.1 57 20-81 84-140 (141)
288 PRK09563 rbgA GTPase YlqF; Rev 99.0 1.5E-09 3.3E-14 86.8 9.5 66 18-88 120-185 (287)
289 KOG0070 GTP-binding ADP-ribosy 99.0 3.3E-09 7.1E-14 77.0 10.0 118 15-151 13-132 (181)
290 KOG0448 Mitofusin 1 GTPase, in 99.0 3.2E-09 6.9E-14 90.8 11.4 131 20-163 110-287 (749)
291 COG4917 EutP Ethanolamine util 99.0 3.4E-10 7.4E-15 76.7 4.5 115 20-163 2-117 (148)
292 KOG0075 GTP-binding ADP-ribosy 99.0 8.6E-10 1.9E-14 76.8 6.3 115 19-151 20-136 (186)
293 cd01855 YqeH YqeH. YqeH is an 99.0 4.7E-10 1E-14 84.5 5.4 57 19-79 127-190 (190)
294 PRK13768 GTPase; Provisional 99.0 3.4E-09 7.3E-14 83.3 9.9 79 70-151 98-176 (253)
295 KOG4252 GTP-binding protein [S 99.0 7.6E-10 1.6E-14 79.6 5.5 118 18-151 19-138 (246)
296 cd01849 YlqF_related_GTPase Yl 99.0 1.3E-09 2.8E-14 79.4 6.8 57 18-79 99-155 (155)
297 KOG0461 Selenocysteine-specifi 99.0 1.5E-08 3.3E-13 80.4 13.2 119 18-152 6-137 (522)
298 COG1162 Predicted GTPases [Gen 99.0 2.6E-09 5.6E-14 84.1 8.7 63 18-84 163-231 (301)
299 TIGR03596 GTPase_YlqF ribosome 99.0 3.1E-09 6.7E-14 84.7 9.3 65 18-87 117-181 (276)
300 TIGR01425 SRP54_euk signal rec 99.0 1.3E-07 2.9E-12 78.9 19.1 122 18-151 99-253 (429)
301 COG3276 SelB Selenocysteine-sp 99.0 9.8E-09 2.1E-13 84.0 12.0 124 21-162 2-126 (447)
302 KOG1532 GTPase XAB1, interacts 99.0 9.3E-09 2E-13 79.2 10.8 79 69-151 116-195 (366)
303 COG2895 CysN GTPases - Sulfate 99.0 1.1E-08 2.5E-13 81.3 11.4 128 17-160 4-162 (431)
304 cd01856 YlqF YlqF. Proteins o 99.0 2.4E-09 5.3E-14 79.2 7.3 59 17-80 113-171 (171)
305 KOG0447 Dynamin-like GTP bindi 99.0 3.8E-08 8.2E-13 82.6 14.9 142 18-162 307-507 (980)
306 KOG3883 Ras family small GTPas 99.0 2.8E-08 6.1E-13 69.8 11.9 122 16-152 6-133 (198)
307 PRK12288 GTPase RsgA; Reviewed 98.9 5.4E-09 1.2E-13 85.4 8.8 61 20-84 206-272 (347)
308 COG5192 BMS1 GTP-binding prote 98.9 7.7E-09 1.7E-13 86.9 9.7 113 14-151 64-177 (1077)
309 COG4108 PrfC Peptide chain rel 98.9 8.7E-09 1.9E-13 84.1 9.7 123 17-156 10-152 (528)
310 PF00448 SRP54: SRP54-type pro 98.9 3.6E-09 7.9E-14 79.8 7.1 75 68-154 83-157 (196)
311 KOG0083 GTPase Rab26/Rab37, sm 98.9 5.8E-10 1.2E-14 76.3 2.1 115 23-151 1-117 (192)
312 KOG0458 Elongation factor 1 al 98.9 2.2E-08 4.7E-13 84.4 11.7 122 15-151 173-329 (603)
313 COG0012 Predicted GTPase, prob 98.9 6.6E-09 1.4E-13 83.7 8.2 89 20-114 3-108 (372)
314 PRK12289 GTPase RsgA; Reviewed 98.9 3.4E-09 7.3E-14 86.7 6.5 61 20-84 173-239 (352)
315 TIGR03348 VI_IcmF type VI secr 98.9 4.3E-08 9.3E-13 92.0 14.5 124 20-151 112-257 (1169)
316 PRK14845 translation initiatio 98.9 2.3E-08 5E-13 91.4 11.9 103 31-151 473-592 (1049)
317 KOG0081 GTPase Rab27, small G 98.9 3.2E-09 6.9E-14 74.9 5.0 120 20-151 10-138 (219)
318 TIGR00157 ribosome small subun 98.9 4.6E-09 9.9E-14 82.1 6.3 60 20-84 121-186 (245)
319 COG1161 Predicted GTPases [Gen 98.9 7.2E-09 1.6E-13 84.1 7.2 63 19-86 132-194 (322)
320 TIGR00092 GTP-binding protein 98.9 1.6E-08 3.4E-13 82.6 9.1 90 20-114 3-108 (368)
321 TIGR03597 GTPase_YqeH ribosome 98.8 1E-08 2.2E-13 84.6 7.6 122 20-151 155-280 (360)
322 COG0481 LepA Membrane GTPase L 98.8 3E-08 6.6E-13 81.8 9.9 129 17-161 7-152 (603)
323 KOG1486 GTP-binding protein DR 98.8 1.4E-08 3E-13 77.4 7.2 105 20-133 63-167 (364)
324 KOG1144 Translation initiation 98.8 4.8E-08 1.1E-12 84.4 11.0 115 18-150 474-605 (1064)
325 COG0050 TufB GTPases - transla 98.8 4.5E-08 9.7E-13 76.3 9.8 128 17-162 10-151 (394)
326 KOG0468 U5 snRNP-specific prot 98.8 4.1E-08 9E-13 83.9 10.3 119 16-150 125-262 (971)
327 PRK09435 membrane ATPase/prote 98.8 3.8E-07 8.2E-12 74.0 15.3 25 16-40 53-77 (332)
328 PRK00098 GTPase RsgA; Reviewed 98.8 3E-08 6.6E-13 79.8 8.8 60 19-82 164-229 (298)
329 KOG3886 GTP-binding protein [S 98.8 1.5E-08 3.2E-13 76.2 6.4 125 19-153 4-132 (295)
330 KOG0467 Translation elongation 98.8 1.8E-08 3.8E-13 87.2 7.6 121 13-150 3-137 (887)
331 KOG1491 Predicted GTP-binding 98.8 3E-08 6.6E-13 78.6 8.2 93 15-113 16-124 (391)
332 cd01854 YjeQ_engC YjeQ/EngC. 98.8 3.1E-08 6.7E-13 79.3 8.5 60 20-83 162-227 (287)
333 KOG0077 Vesicle coat complex C 98.8 5.8E-08 1.3E-12 69.2 8.8 115 18-151 19-135 (193)
334 PRK10416 signal recognition pa 98.8 4.1E-08 8.9E-13 79.4 8.8 126 17-152 112-274 (318)
335 cd01859 MJ1464 MJ1464. This f 98.7 3.6E-08 7.8E-13 71.8 7.3 57 18-79 100-156 (156)
336 PRK11889 flhF flagellar biosyn 98.7 3.6E-08 7.8E-13 80.8 7.4 123 18-152 240-392 (436)
337 TIGR00064 ftsY signal recognit 98.7 2.1E-07 4.7E-12 73.7 11.4 79 67-155 153-235 (272)
338 KOG1424 Predicted GTP-binding 98.7 4.8E-08 1.1E-12 81.3 6.3 63 19-86 314-376 (562)
339 PRK14974 cell division protein 98.7 1E-07 2.2E-12 77.4 8.2 76 68-155 222-297 (336)
340 COG1419 FlhF Flagellar GTP-bin 98.7 1.7E-07 3.7E-12 76.7 9.1 122 19-152 203-353 (407)
341 KOG0076 GTP-binding ADP-ribosy 98.6 9.8E-08 2.1E-12 68.6 6.7 120 18-151 16-140 (197)
342 PRK13796 GTPase YqeH; Provisio 98.6 6.7E-08 1.5E-12 79.9 6.7 59 19-81 160-222 (365)
343 PF03029 ATP_bind_1: Conserved 98.6 8.4E-08 1.8E-12 74.6 6.3 77 70-151 92-170 (238)
344 KOG0465 Mitochondrial elongati 98.6 2.6E-07 5.7E-12 78.4 9.0 187 15-218 35-256 (721)
345 PRK14722 flhF flagellar biosyn 98.6 2.4E-07 5.2E-12 76.1 8.2 135 18-158 136-302 (374)
346 PRK14721 flhF flagellar biosyn 98.6 5.3E-07 1.2E-11 75.2 10.0 126 18-155 190-344 (420)
347 KOG0096 GTPase Ran/TC4/GSP1 (n 98.6 6.4E-07 1.4E-11 65.4 8.9 116 18-151 9-128 (216)
348 PRK14723 flhF flagellar biosyn 98.6 3E-07 6.5E-12 81.5 8.6 124 19-152 185-338 (767)
349 TIGR00750 lao LAO/AO transport 98.5 1E-06 2.2E-11 71.1 10.5 25 17-41 32-56 (300)
350 PRK12724 flagellar biosynthesi 98.5 9.7E-07 2.1E-11 73.3 10.2 126 19-154 223-376 (432)
351 COG5257 GCD11 Translation init 98.5 8.2E-07 1.8E-11 70.2 8.9 119 18-151 9-154 (415)
352 KOG0460 Mitochondrial translat 98.5 1E-06 2.3E-11 70.1 9.4 128 17-162 52-193 (449)
353 COG0488 Uup ATPase components 98.5 2.2E-06 4.7E-11 73.9 12.0 40 3-44 15-54 (530)
354 cd03112 CobW_like The function 98.5 1.1E-06 2.4E-11 64.1 8.8 22 21-42 2-23 (158)
355 KOG2485 Conserved ATP/GTP bind 98.5 5.6E-07 1.2E-11 70.8 7.3 72 16-88 140-215 (335)
356 KOG0464 Elongation factor G [T 98.5 3.3E-08 7.2E-13 80.4 0.5 118 17-151 35-168 (753)
357 COG0552 FtsY Signal recognitio 98.5 9.1E-07 2E-11 70.5 8.4 128 16-150 136-297 (340)
358 PTZ00099 rab6; Provisional 98.4 1.4E-06 3E-11 64.8 8.5 70 69-151 29-99 (176)
359 PRK12726 flagellar biosynthesi 98.4 1.4E-06 3E-11 71.4 8.7 125 18-154 205-359 (407)
360 PRK05703 flhF flagellar biosyn 98.4 1.3E-06 2.8E-11 73.5 8.3 132 19-162 221-381 (424)
361 PRK12727 flagellar biosynthesi 98.4 1.8E-06 3.9E-11 73.6 9.0 24 18-41 349-372 (559)
362 PRK00771 signal recognition pa 98.4 2.2E-06 4.9E-11 72.1 9.3 71 69-151 176-246 (437)
363 PRK10867 signal recognition pa 98.4 1.7E-06 3.7E-11 72.7 8.4 72 68-151 183-254 (433)
364 PF03308 ArgK: ArgK protein; 98.4 4.2E-07 9E-12 70.2 4.4 24 17-40 27-50 (266)
365 KOG1673 Ras GTPases [General f 98.4 3.1E-06 6.7E-11 59.8 8.0 121 17-151 18-138 (205)
366 PRK06731 flhF flagellar biosyn 98.4 1.3E-06 2.9E-11 68.9 7.0 125 18-154 74-228 (270)
367 PRK12723 flagellar biosynthesi 98.4 9.4E-06 2E-10 67.4 12.2 124 18-152 173-327 (388)
368 KOG1487 GTP-binding protein DR 98.3 5.4E-07 1.2E-11 69.1 4.3 120 20-148 60-180 (358)
369 COG3523 IcmF Type VI protein s 98.3 9.4E-06 2E-10 75.1 13.0 123 20-151 126-270 (1188)
370 COG0541 Ffh Signal recognition 98.3 4E-06 8.6E-11 69.1 9.5 71 69-151 183-253 (451)
371 PRK06995 flhF flagellar biosyn 98.3 2.4E-06 5.2E-11 72.5 7.4 24 19-42 256-279 (484)
372 KOG2423 Nucleolar GTPase [Gene 98.3 5.3E-07 1.2E-11 73.0 3.1 66 15-85 303-368 (572)
373 cd00066 G-alpha G protein alph 98.3 1.5E-05 3.3E-10 64.8 11.1 74 67-151 159-242 (317)
374 TIGR00959 ffh signal recogniti 98.3 4.8E-06 1E-10 69.9 8.4 71 68-150 182-252 (428)
375 cd03222 ABC_RNaseL_inhibitor T 98.2 3.7E-05 8.1E-10 57.1 12.0 27 18-44 24-50 (177)
376 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.2 5.2E-05 1.1E-09 54.4 12.2 26 18-43 25-50 (144)
377 KOG0072 GTP-binding ADP-ribosy 98.2 4.9E-06 1.1E-10 58.1 5.9 115 18-151 17-133 (182)
378 cd03114 ArgK-like The function 98.2 8.1E-06 1.8E-10 58.8 7.3 21 21-41 1-21 (148)
379 cd03230 ABC_DR_subfamily_A Thi 98.2 6E-05 1.3E-09 55.8 12.0 27 18-44 25-51 (173)
380 cd03115 SRP The signal recogni 98.2 7E-06 1.5E-10 60.8 6.9 73 68-152 82-154 (173)
381 cd03229 ABC_Class3 This class 98.2 5.5E-05 1.2E-09 56.3 11.5 26 19-44 26-51 (178)
382 smart00275 G_alpha G protein a 98.1 3.2E-05 7E-10 63.5 10.9 74 67-151 182-265 (342)
383 PRK01889 GTPase RsgA; Reviewed 98.1 5.2E-06 1.1E-10 68.5 5.1 60 19-82 195-260 (356)
384 KOG2484 GTPase [General functi 98.1 4.5E-06 9.7E-11 67.8 4.3 66 17-87 250-315 (435)
385 cd03216 ABC_Carb_Monos_I This 98.1 5.9E-05 1.3E-09 55.3 9.9 27 18-44 25-51 (163)
386 cd03213 ABCG_EPDR ABCG transpo 98.0 0.00011 2.4E-09 55.4 11.5 26 18-43 34-59 (194)
387 cd03223 ABCD_peroxisomal_ALDP 98.0 0.00028 6E-09 51.9 13.2 27 18-44 26-52 (166)
388 KOG1533 Predicted GTPase [Gene 98.0 7.6E-05 1.6E-09 56.8 10.1 19 21-39 4-22 (290)
389 COG0194 Gmk Guanylate kinase [ 98.0 0.0003 6.4E-09 51.9 11.9 26 18-43 3-28 (191)
390 cd03246 ABCC_Protease_Secretio 98.0 6.4E-05 1.4E-09 55.6 8.6 27 18-44 27-53 (173)
391 COG4988 CydD ABC-type transpor 98.0 5E-05 1.1E-09 64.9 8.8 37 6-44 336-372 (559)
392 KOG0780 Signal recognition par 98.0 2.1E-05 4.5E-10 63.9 6.2 71 68-150 183-253 (483)
393 COG1126 GlnQ ABC-type polar am 97.9 9.5E-06 2.1E-10 61.0 3.8 41 4-46 15-55 (240)
394 COG1116 TauB ABC-type nitrate/ 97.9 8.3E-06 1.8E-10 62.7 3.4 40 6-47 18-57 (248)
395 KOG1534 Putative transcription 97.9 2.8E-05 6.1E-10 58.1 5.9 88 70-162 99-190 (273)
396 PF00004 AAA: ATPase family as 97.9 6.9E-05 1.5E-09 52.5 7.7 21 22-42 1-21 (132)
397 cd03228 ABCC_MRP_Like The MRP 97.9 7.9E-05 1.7E-09 55.1 8.1 26 19-44 28-53 (171)
398 cd00267 ABC_ATPase ABC (ATP-bi 97.9 0.00031 6.7E-09 51.1 11.0 25 19-43 25-49 (157)
399 COG0488 Uup ATPase components 97.9 4.8E-05 1E-09 65.7 7.5 29 18-46 347-375 (530)
400 PF02263 GBP: Guanylate-bindin 97.9 0.00011 2.4E-09 58.1 9.0 66 17-82 19-87 (260)
401 COG1120 FepC ABC-type cobalami 97.9 1.3E-05 2.7E-10 62.6 3.3 38 5-44 16-53 (258)
402 cd03232 ABC_PDR_domain2 The pl 97.9 0.00037 7.9E-09 52.5 11.2 26 18-43 32-57 (192)
403 KOG3887 Predicted small GTPase 97.8 6.2E-05 1.3E-09 57.5 6.6 124 19-152 27-150 (347)
404 cd03281 ABC_MSH5_euk MutS5 hom 97.8 0.00036 7.7E-09 53.5 10.9 34 5-40 17-50 (213)
405 COG3845 ABC-type uncharacteriz 97.8 0.00029 6.2E-09 59.2 10.9 40 5-46 18-57 (501)
406 COG3840 ThiQ ABC-type thiamine 97.8 2E-05 4.3E-10 57.8 3.6 28 19-46 25-52 (231)
407 COG1703 ArgK Putative periplas 97.8 0.00012 2.5E-09 57.9 7.9 25 16-40 48-72 (323)
408 COG5258 GTPBP1 GTPase [General 97.8 0.0003 6.4E-09 57.4 10.2 131 15-161 113-277 (527)
409 cd03243 ABC_MutS_homologs The 97.8 0.00041 8.8E-09 52.7 10.7 23 20-42 30-52 (202)
410 COG4559 ABC-type hemin transpo 97.8 2.9E-05 6.3E-10 58.3 4.0 41 3-45 13-53 (259)
411 KOG0082 G-protein alpha subuni 97.8 0.00047 1E-08 56.2 11.1 75 67-152 193-277 (354)
412 PF00005 ABC_tran: ABC transpo 97.8 2.3E-05 5.1E-10 55.5 3.4 26 19-44 11-36 (137)
413 PF13555 AAA_29: P-loop contai 97.8 2.8E-05 6.2E-10 46.8 3.2 21 20-40 24-44 (62)
414 cd03111 CpaE_like This protein 97.8 0.00053 1.1E-08 46.4 9.8 103 22-146 2-106 (106)
415 KOG1143 Predicted translation 97.8 4.4E-05 9.5E-10 61.8 4.8 132 15-162 163-326 (591)
416 KOG0446 Vacuolar sorting prote 97.7 2.1E-05 4.6E-10 69.4 3.1 130 18-152 28-214 (657)
417 COG1136 SalX ABC-type antimicr 97.7 3.6E-05 7.7E-10 58.9 4.0 26 20-45 32-57 (226)
418 TIGR01166 cbiO cobalt transpor 97.7 3.3E-05 7.1E-10 58.1 3.8 25 20-44 19-43 (190)
419 COG0411 LivG ABC-type branched 97.7 5.6E-06 1.2E-10 63.3 -0.7 26 19-44 30-55 (250)
420 cd03225 ABC_cobalt_CbiO_domain 97.7 4.2E-05 9.1E-10 58.5 4.1 27 18-44 26-52 (211)
421 PRK15177 Vi polysaccharide exp 97.7 4.5E-05 9.8E-10 58.5 4.0 26 19-44 13-38 (213)
422 COG1117 PstB ABC-type phosphat 97.7 4.8E-05 1E-09 57.2 3.8 36 4-41 20-55 (253)
423 cd03261 ABC_Org_Solvent_Resist 97.7 4.7E-05 1E-09 59.2 4.0 27 18-44 25-51 (235)
424 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 5E-05 1.1E-09 58.4 4.0 27 18-44 29-55 (218)
425 KOG0466 Translation initiation 97.7 4E-05 8.7E-10 60.4 3.3 27 17-43 36-62 (466)
426 COG1121 ZnuC ABC-type Mn/Zn tr 97.7 4.5E-05 9.7E-10 59.3 3.5 36 6-43 19-54 (254)
427 cd03226 ABC_cobalt_CbiO_domain 97.7 5.2E-05 1.1E-09 57.7 3.9 27 18-44 25-51 (205)
428 smart00010 small_GTPase Small 97.7 0.00028 6.1E-09 48.7 7.3 22 21-42 2-23 (124)
429 cd03280 ABC_MutS2 MutS2 homolo 97.7 0.0021 4.4E-08 48.8 12.6 21 20-40 29-49 (200)
430 TIGR02673 FtsE cell division A 97.7 5.6E-05 1.2E-09 57.9 4.0 26 19-44 28-53 (214)
431 TIGR00960 3a0501s02 Type II (G 97.6 5.5E-05 1.2E-09 58.1 4.0 27 18-44 28-54 (216)
432 cd03259 ABC_Carb_Solutes_like 97.6 5.7E-05 1.2E-09 57.9 4.0 26 19-44 26-51 (213)
433 cd03265 ABC_DrrA DrrA is the A 97.6 5.8E-05 1.3E-09 58.1 4.0 26 19-44 26-51 (220)
434 cd03238 ABC_UvrA The excision 97.6 4.9E-05 1.1E-09 56.4 3.4 24 18-41 20-43 (176)
435 KOG0781 Signal recognition par 97.6 6.6E-05 1.4E-09 62.6 4.4 79 67-152 465-545 (587)
436 cd03293 ABC_NrtD_SsuB_transpor 97.6 5.7E-05 1.2E-09 58.2 3.8 26 19-44 30-55 (220)
437 KOG0066 eIF2-interacting prote 97.6 0.00096 2.1E-08 55.6 10.9 25 20-44 614-638 (807)
438 cd02038 FleN-like FleN is a me 97.6 0.00084 1.8E-08 47.8 9.6 105 23-149 4-109 (139)
439 TIGR02211 LolD_lipo_ex lipopro 97.6 6.4E-05 1.4E-09 57.9 4.1 27 18-44 30-56 (221)
440 cd03262 ABC_HisP_GlnQ_permease 97.6 6.5E-05 1.4E-09 57.5 4.1 27 18-44 25-51 (213)
441 TIGR03608 L_ocin_972_ABC putat 97.6 6.3E-05 1.4E-09 57.3 3.9 26 19-44 24-49 (206)
442 cd03264 ABC_drug_resistance_li 97.6 6E-05 1.3E-09 57.6 3.7 24 21-44 27-50 (211)
443 cd03269 ABC_putative_ATPase Th 97.6 6.8E-05 1.5E-09 57.3 4.0 27 18-44 25-51 (210)
444 PRK13541 cytochrome c biogenes 97.6 6.9E-05 1.5E-09 56.6 4.0 27 18-44 25-51 (195)
445 cd03235 ABC_Metallic_Cations A 97.6 6.9E-05 1.5E-09 57.4 4.0 27 18-44 24-50 (213)
446 cd03292 ABC_FtsE_transporter F 97.6 6.7E-05 1.5E-09 57.5 3.9 27 18-44 26-52 (214)
447 cd03218 ABC_YhbG The ABC trans 97.6 7.2E-05 1.6E-09 58.1 4.1 26 19-44 26-51 (232)
448 COG1131 CcmA ABC-type multidru 97.6 6.9E-05 1.5E-09 60.2 4.0 25 20-44 32-56 (293)
449 COG3839 MalK ABC-type sugar tr 97.6 6.9E-05 1.5E-09 60.8 4.0 27 20-46 30-56 (338)
450 TIGR01188 drrA daunorubicin re 97.6 5E-05 1.1E-09 61.4 3.2 26 19-44 19-44 (302)
451 cd03258 ABC_MetN_methionine_tr 97.6 7.5E-05 1.6E-09 58.0 4.1 27 18-44 30-56 (233)
452 cd03224 ABC_TM1139_LivF_branch 97.6 7.8E-05 1.7E-09 57.4 4.1 27 18-44 25-51 (222)
453 PRK13695 putative NTPase; Prov 97.6 0.00076 1.6E-08 49.9 9.3 22 21-42 2-23 (174)
454 cd03263 ABC_subfamily_A The AB 97.6 7.7E-05 1.7E-09 57.4 4.1 26 19-44 28-53 (220)
455 PRK11248 tauB taurine transpor 97.6 7.6E-05 1.6E-09 58.9 4.1 26 19-44 27-52 (255)
456 TIGR01189 ccmA heme ABC export 97.6 8.2E-05 1.8E-09 56.3 4.1 27 18-44 25-51 (198)
457 cd03257 ABC_NikE_OppD_transpor 97.6 7.7E-05 1.7E-09 57.7 4.0 27 18-44 30-56 (228)
458 PRK13540 cytochrome c biogenes 97.6 8E-05 1.7E-09 56.5 4.0 27 18-44 26-52 (200)
459 cd03231 ABC_CcmA_heme_exporter 97.6 6.8E-05 1.5E-09 56.9 3.6 27 18-44 25-51 (201)
460 cd03301 ABC_MalK_N The N-termi 97.6 8.1E-05 1.7E-09 57.0 4.0 26 19-44 26-51 (213)
461 COG4598 HisP ABC-type histidin 97.6 0.003 6.5E-08 46.5 11.7 25 18-42 31-55 (256)
462 PRK13539 cytochrome c biogenes 97.6 8.4E-05 1.8E-09 56.7 4.1 27 18-44 27-53 (207)
463 TIGR03864 PQQ_ABC_ATP ABC tran 97.6 7.9E-05 1.7E-09 58.0 4.0 27 18-44 26-52 (236)
464 cd03215 ABC_Carb_Monos_II This 97.6 8.4E-05 1.8E-09 55.5 4.0 26 19-44 26-51 (182)
465 COG1134 TagH ABC-type polysacc 97.6 7.9E-05 1.7E-09 57.1 3.8 27 18-44 52-78 (249)
466 TIGR02315 ABC_phnC phosphonate 97.6 7.9E-05 1.7E-09 58.2 4.0 26 19-44 28-53 (243)
467 COG3638 ABC-type phosphate/pho 97.6 6.4E-05 1.4E-09 57.3 3.2 36 6-43 19-54 (258)
468 PRK10247 putative ABC transpor 97.6 6.5E-05 1.4E-09 58.1 3.4 26 19-44 33-58 (225)
469 PRK13638 cbiO cobalt transport 97.6 7.4E-05 1.6E-09 59.5 3.8 26 19-44 27-52 (271)
470 cd03237 ABC_RNaseL_inhibitor_d 97.6 8.6E-05 1.9E-09 58.2 4.1 27 18-44 24-50 (246)
471 cd03296 ABC_CysA_sulfate_impor 97.6 8.4E-05 1.8E-09 58.0 4.0 26 19-44 28-53 (239)
472 PRK11537 putative GTP-binding 97.6 0.00069 1.5E-08 55.1 9.4 24 19-42 4-27 (318)
473 COG0410 LivF ABC-type branched 97.6 9.1E-05 2E-09 56.3 3.9 27 18-44 28-54 (237)
474 PRK10908 cell division protein 97.6 8.7E-05 1.9E-09 57.2 4.0 27 18-44 27-53 (222)
475 PRK11629 lolD lipoprotein tran 97.6 8.5E-05 1.8E-09 57.7 3.9 26 19-44 35-60 (233)
476 cd03268 ABC_BcrA_bacitracin_re 97.6 9E-05 1.9E-09 56.5 4.0 27 18-44 25-51 (208)
477 PRK10895 lipopolysaccharide AB 97.6 9E-05 2E-09 57.9 4.1 27 18-44 28-54 (241)
478 cd03219 ABC_Mj1267_LivG_branch 97.6 8.7E-05 1.9E-09 57.8 4.0 27 18-44 25-51 (236)
479 PRK13538 cytochrome c biogenes 97.6 9.7E-05 2.1E-09 56.2 4.1 27 18-44 26-52 (204)
480 PRK10584 putative ABC transpor 97.6 9.1E-05 2E-09 57.4 4.0 27 18-44 35-61 (228)
481 cd03214 ABC_Iron-Siderophores_ 97.5 0.0001 2.2E-09 54.9 4.1 27 18-44 24-50 (180)
482 PF13207 AAA_17: AAA domain; P 97.5 7.5E-05 1.6E-09 51.7 3.2 22 21-42 1-22 (121)
483 TIGR03410 urea_trans_UrtE urea 97.5 9.6E-05 2.1E-09 57.3 4.1 27 18-44 25-51 (230)
484 COG1618 Predicted nucleotide k 97.5 0.0017 3.8E-08 46.7 10.0 117 19-148 5-141 (179)
485 cd03254 ABCC_Glucan_exporter_l 97.5 9.5E-05 2.1E-09 57.3 4.0 26 19-44 29-54 (229)
486 cd03260 ABC_PstB_phosphate_tra 97.5 8.2E-05 1.8E-09 57.6 3.6 26 18-43 25-50 (227)
487 TIGR01184 ntrCD nitrate transp 97.5 9.7E-05 2.1E-09 57.3 4.1 26 19-44 11-36 (230)
488 cd03298 ABC_ThiQ_thiamine_tran 97.5 9.8E-05 2.1E-09 56.5 4.0 27 18-44 23-49 (211)
489 cd03266 ABC_NatA_sodium_export 97.5 9.8E-05 2.1E-09 56.7 4.0 26 19-44 31-56 (218)
490 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.00091 2E-08 43.9 8.3 68 22-114 2-69 (99)
491 PRK11124 artP arginine transpo 97.5 9.6E-05 2.1E-09 57.8 4.0 27 18-44 27-53 (242)
492 cd00071 GMPK Guanosine monopho 97.5 0.00012 2.6E-09 52.0 4.1 21 22-42 2-22 (137)
493 cd03236 ABC_RNaseL_inhibitor_d 97.5 0.0001 2.2E-09 58.1 4.1 29 17-45 24-52 (255)
494 COG4525 TauB ABC-type taurine 97.5 0.00015 3.3E-09 53.9 4.6 24 20-43 32-55 (259)
495 PRK11247 ssuB aliphatic sulfon 97.5 9.8E-05 2.1E-09 58.3 3.9 26 19-44 38-63 (257)
496 cd03256 ABC_PhnC_transporter A 97.5 0.0001 2.2E-09 57.5 4.0 26 19-44 27-52 (241)
497 cd03247 ABCC_cytochrome_bd The 97.5 0.00011 2.4E-09 54.6 4.0 26 19-44 28-53 (178)
498 PRK15056 manganese/iron transp 97.5 0.0001 2.2E-09 58.8 4.0 27 18-44 32-58 (272)
499 PRK14250 phosphate ABC transpo 97.5 0.00011 2.4E-09 57.4 4.1 26 19-44 29-54 (241)
500 cd03245 ABCC_bacteriocin_expor 97.5 0.00011 2.4E-09 56.5 4.0 27 18-44 29-55 (220)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=100.00 E-value=1e-31 Score=205.40 Aligned_cols=179 Identities=41% Similarity=0.682 Sum_probs=142.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
++|+|+|.+|+||||++|+|+|...+.+..+..++|..+....... +++.+.||||||+.++....+++..++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 5899999999999999999999999888776777888888776654 899999999999999887778888999999999
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcccCCchhh---------
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK--------- 170 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~--------- 170 (230)
+.+++|++|||++.+ +++..+...++.+.+.||..++++++||+|++|.+. +..+++|+++..+..|+
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~--~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE--DDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT--TTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc--cccHHHHHhccCchhHhHHhhhcCCE
Confidence 999999999999999 999999999999999999999999999999999998 44576666643333333
Q ss_pred ----------------hhHHHHHhHHHHHHHcCC--CcHHHHHHHHHHHH
Q 026970 171 ----------------KGATKLRDQQFEVDSLKG--YSKREISELKEQMH 202 (230)
Q Consensus 171 ----------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 202 (230)
....++.++++++..+++ |+++.++++++...
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~ 206 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKE 206 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 234466888999999988 99998888876654
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.96 E-value=2.7e-28 Score=184.82 Aligned_cols=140 Identities=56% Similarity=0.894 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
++|+|+|.+|+|||||+|+|+|...+.+.....+.|..+......+ .+..+.||||||+.++.........++..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999988766655667888887776665 788999999999999876666777888888888
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcc
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 163 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~ 163 (230)
+.+++|++|+|+++. +++..+...++.+.+.||...+.++++|+|++|.+. +.++++|+..
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~--~~~~~~~~~~ 140 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE--GGTLEDYLEN 140 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC--CCcHHHHHHh
Confidence 889999999999998 499999999999999999989999999999999997 5688888885
No 3
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.91 E-value=3.3e-23 Score=163.32 Aligned_cols=156 Identities=23% Similarity=0.304 Sum_probs=112.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
......++|+++|.+|+||||++|+|+|...+..... .+.+......... .++..+.||||||+.+.....+.....+
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~-~~G~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRT-RAGFTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEE-ECCeEEEEEECCCCCchHHHHHHHHHHH
Confidence 3345668999999999999999999999876433221 1222332223233 3788999999999997533222222222
Q ss_pred HHHHHhhcCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcccCCchhhhh
Q 026970 94 VKCIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKG 172 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~ 172 (230)
..++ ...++|++|||.+.+ .+++..+...++.+.+.||..++.++|+|+||+|..++++.++++|+.+ +++.++..
T Consensus 111 k~~l--~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~ 187 (313)
T TIGR00991 111 KRFL--LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRV 187 (313)
T ss_pred HHHh--hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHH
Confidence 2222 224789999997654 3788889999999999999999999999999999987778899999995 77776644
Q ss_pred HH
Q 026970 173 AT 174 (230)
Q Consensus 173 ~~ 174 (230)
..
T Consensus 188 i~ 189 (313)
T TIGR00991 188 IH 189 (313)
T ss_pred HH
Confidence 43
No 4
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.88 E-value=1.8e-21 Score=165.03 Aligned_cols=152 Identities=22% Similarity=0.306 Sum_probs=112.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+|+|.+|+|||||+|+|+|...+.+.....+ |......... .++..+.||||||+.++.... .....+.+++
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~-TTr~~ei~~~-idG~~L~VIDTPGL~dt~~dq-~~neeILk~I 193 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMG-TTSVQEIEGL-VQGVKIRVIDTPGLKSSASDQ-SKNEKILSSV 193 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCC-ceEEEEEEEE-ECCceEEEEECCCCCccccch-HHHHHHHHHH
Confidence 346899999999999999999999987666443333 4333333233 267899999999999865432 2334444444
Q ss_pred Hhhc--CCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCCh-----hhHHHHhcccCCchh
Q 026970 98 GMAK--DGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-----ETLEDYLGRECPKPL 169 (230)
Q Consensus 98 ~~~~--~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-----~~~~~~l~~~~~~~l 169 (230)
..+. .++|++|||+..+. +.+.++..+++.+.+.||..+|.++|||+|++|.+++++ .++++|+.. +...+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~L 272 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIV 272 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHH
Confidence 3332 36899999998752 333467789999999999999999999999999997543 689999984 77777
Q ss_pred hhhH
Q 026970 170 KKGA 173 (230)
Q Consensus 170 ~~~~ 173 (230)
+...
T Consensus 273 q~~I 276 (763)
T TIGR00993 273 QQAI 276 (763)
T ss_pred HHHH
Confidence 7433
No 5
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.87 E-value=5.3e-21 Score=148.84 Aligned_cols=136 Identities=29% Similarity=0.349 Sum_probs=99.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
.....+|+|+|++|+|||||+|+|+|...+.... ..+.|.....+.... ++..+.||||||+.+...... ....+..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~-~~~~~~~ 104 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQR-VNRKILS 104 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHH-HHHHHHH
Confidence 3456899999999999999999999987654432 334455555554443 778999999999997643211 2222222
Q ss_pred HHHhhc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCCh
Q 026970 96 CIGMAK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 154 (230)
Q Consensus 96 ~~~~~~--~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (230)
.+..+. .++|+++||..++ .+++..+..+++.+.+.||..++.++++|+||+|...+++
T Consensus 105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 105 SIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 222222 3678999998765 3788888999999999999999999999999999987553
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=1.2e-20 Score=145.86 Aligned_cols=124 Identities=23% Similarity=0.322 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
..|+++|+|+||||||+|.|+|.+. +-.+..+.|+......+...+..++.|+||||+..+ ...+.+.+.+....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~~ 81 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAARS 81 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHHH
Confidence 5799999999999999999999998 444555656666666666667889999999999975 45566778888888
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
++..+|+++||+|+++.+...+...++.+++. ..|+++++||.|...++
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~ 130 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPK 130 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCcH
Confidence 89999999999999977999998888888872 24899999999999743
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=1.3e-19 Score=147.54 Aligned_cols=141 Identities=24% Similarity=0.250 Sum_probs=112.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
+.|+++|+|+||||||+|+|+|.....+. ..+++|.+..+....+ .+..+.+|||+|+.+. ..+.+...+......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~-D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~--~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVS-DTPGVTRDRIYGDAEW-LGREFILIDTGGLDDG--DEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEee-cCCCCccCCccceeEE-cCceEEEEECCCCCcC--CchHHHHHHHHHHHH
Confidence 68999999999999999999999875553 5778999999988887 6778999999999853 235567777777777
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcccCCchhh
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 170 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~ 170 (230)
....+|++|||+|+.+.+++.|....++|++. .+|+++|+||+|.... ....-+|.+-.-.+.+.
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~~-e~~~~efyslG~g~~~~ 144 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLKA-EELAYEFYSLGFGEPVP 144 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCchh-hhhHHHHHhcCCCCceE
Confidence 78889999999999989999999999998853 3489999999998742 33445555533344433
No 8
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.82 E-value=6.8e-19 Score=122.18 Aligned_cols=116 Identities=22% Similarity=0.293 Sum_probs=79.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+|+|.+|+|||||+|+|++........ ..+.|....+..+.. ++..+.++||||+.+........ ..+...+...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~-~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSN-IPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESS-STTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccc-cccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence 68999999999999999999875433332 345566664444443 77888999999998744222211 2333344444
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk 146 (230)
..+|+++||+++..+.+..+..+++.+. ...|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 7789999999987544445566666663 23589999997
No 9
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=135.32 Aligned_cols=132 Identities=23% Similarity=0.220 Sum_probs=95.4
Q ss_pred CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHH
Q 026970 11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG 90 (230)
Q Consensus 11 ~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~ 90 (230)
.++.-++..++|++.|.|+||||||+++|++.+. .-.+.+.+|+...+.++.. ++.++++|||||+.|-.. ++.+
T Consensus 160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl--~ErN 234 (346)
T COG1084 160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPL--EERN 234 (346)
T ss_pred cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeec-CCceEEEecCCcccCCCh--HHhc
Confidence 4566667789999999999999999999999876 4445667788888887764 777999999999998543 2222
Q ss_pred HHHHHHHHhhcCCccEEEEEEeCCC--CCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 91 KEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~d~~~--~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.-=.+++.....-.++|+|++|++. .++-+. ..+++.++..|. .|+++|+||+|...
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~ 294 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIAD 294 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccc
Confidence 2112222222233478999999963 455444 566677777765 48999999999875
No 10
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=7.7e-18 Score=123.80 Aligned_cols=126 Identities=20% Similarity=0.266 Sum_probs=94.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH---HHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE---FVGKE 92 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~---~~~~~ 92 (230)
.+..+-|+++|+++||||||||+|++.....-....+|.|....++.+. ..+.++|.||++-...+.+ .+...
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHH
Confidence 3455899999999999999999999976322233567788888777653 2378999999987655442 23333
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+..++.... ...++++++|+...+...|.+.++++... + .|+++|+||+|++.
T Consensus 97 i~~YL~~R~-~L~~vvlliD~r~~~~~~D~em~~~l~~~-~----i~~~vv~tK~DKi~ 149 (200)
T COG0218 97 IEEYLEKRA-NLKGVVLLIDARHPPKDLDREMIEFLLEL-G----IPVIVVLTKADKLK 149 (200)
T ss_pred HHHHHhhch-hheEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCeEEEEEccccCC
Confidence 344443332 36788999999878888899999998885 3 47999999999997
No 11
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.79 E-value=6.2e-18 Score=134.15 Aligned_cols=120 Identities=21% Similarity=0.239 Sum_probs=81.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|++|||||||+|+|+|........ .+++|.. ....+....+..+.++||||+.... ......+.+.....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~-~~~TTr~-~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSP-KAQTTRN-RISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCC-CCCcccC-cEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 68999999999999999999987532222 2233443 2333333355679999999997642 22334444555566
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+..+|++++|+|+++..+.. ..++..+... ..|+++|+||+|+..
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~-----~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQNL-----KRPVVLTRNKLDNKF 121 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHHHHHHHhc-----CCCEEEEEECeeCCC
Confidence 67889999999998554433 4444444432 348999999999874
No 12
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=2.3e-18 Score=123.92 Aligned_cols=120 Identities=24% Similarity=0.303 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
.+|+++|.|++|||||+|+|+|...... ..+++|.......+.+ .+..+.++|+||.++......+ +.+.... .
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~--n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~-l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVG--NWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEE--ERVARDY-L 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEE--ESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHH--HHHHHHH-H
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceec--CCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcH--HHHHHHH-H
Confidence 3799999999999999999999985433 3567788877776765 6799999999999876543321 2222211 1
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
....+|++++|+|++ .+. .+..++..+.+. | .|+++|+||+|....
T Consensus 75 ~~~~~D~ii~VvDa~-~l~-r~l~l~~ql~e~-g----~P~vvvlN~~D~a~~ 120 (156)
T PF02421_consen 75 LSEKPDLIIVVVDAT-NLE-RNLYLTLQLLEL-G----IPVVVVLNKMDEAER 120 (156)
T ss_dssp HHTSSSEEEEEEEGG-GHH-HHHHHHHHHHHT-T----SSEEEEEETHHHHHH
T ss_pred hhcCCCEEEEECCCC-CHH-HHHHHHHHHHHc-C----CCEEEEEeCHHHHHH
Confidence 135789999999998 443 334455555553 3 489999999998864
No 13
>PRK00089 era GTPase Era; Reviewed
Probab=99.78 E-value=1.3e-17 Score=133.95 Aligned_cols=122 Identities=21% Similarity=0.298 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
..|+++|++|||||||+|+|+|....... ..+.|.......+....+..+.++||||+.+.. ....+.+......
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs--~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~ 80 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVS--PKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWS 80 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecC--CCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHH
Confidence 67999999999999999999998763332 222233333333332245789999999997643 2333445555556
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+|++++|+|+++.++..+...++.+... ..|+++|+||+|+..
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~ 127 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVK 127 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCC
Confidence 67789999999999866776666666655531 348999999999984
No 14
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=4.7e-17 Score=121.52 Aligned_cols=126 Identities=18% Similarity=0.284 Sum_probs=83.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
....++|+++|.+|+|||||+|.|++...........+.|....++.. + ..+.+|||||+......... ...+..
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~-~~~~~~ 89 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEE-KEKWQK 89 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhH-HHHHHH
Confidence 356689999999999999999999987521111123344555544432 2 36899999998764332221 122222
Q ss_pred HHH---hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIG---MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~---~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+. .....+|++++|+|++.+++..+...+..+... ..|+++|+||+|+..
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 221 222356899999999878888877666655442 347999999999875
No 15
>PRK15494 era GTPase Era; Provisional
Probab=99.75 E-value=8.6e-17 Score=131.16 Aligned_cols=134 Identities=21% Similarity=0.279 Sum_probs=89.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+|+++|.+|||||||+|+|++........ ...+|.......+. .++..+.||||||+.+... .+...+.+...
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~-k~~tTr~~~~~~~~-~~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~ 126 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTP-KVQTTRSIITGIIT-LKDTQVILYDTPGIFEPKG---SLEKAMVRCAW 126 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccC-CCCCccCcEEEEEE-eCCeEEEEEECCCcCCCcc---cHHHHHHHHHH
Confidence 3599999999999999999999987532222 23334433333333 3677899999999865322 23344444444
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~ 162 (230)
..+.++|++++|+|..+.++..+..++..+... + .|.++|+||+|+.......+.+++.
T Consensus 127 ~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~~~~~~~~~l~ 185 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESKYLNDIKAFLT 185 (339)
T ss_pred HHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccccHHHHHHHHH
Confidence 556789999999999767777766666666543 2 3577899999986432233444443
No 16
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.75 E-value=4.4e-17 Score=120.45 Aligned_cols=124 Identities=20% Similarity=0.171 Sum_probs=76.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe-EEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ-VVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
+|+++|.+|||||||+|+|.+...... ..++.|.......+.. .+. .+.++||||+.+.......+...+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~--~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~---- 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA--DYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLR---- 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc--CCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHH----
Confidence 589999999999999999998654111 1223344444444443 444 89999999986432221112222222
Q ss_pred hcCCccEEEEEEeCCCC-CCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSR-FSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~-~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+|++++|+|+++. -+.. ...+.+.+..........|+++|+||+|+..
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 23457999999999844 2222 2445555555422223468999999999875
No 17
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.75 E-value=8.1e-17 Score=118.83 Aligned_cols=124 Identities=23% Similarity=0.197 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
++|+++|.+|+|||||+|+|++...... .....|.......... .+..+.+|||||+.+........... ..+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~--~~~~~ 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEM--QAITA 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHH--HHHHH
Confidence 5799999999999999999998764211 1223344444444433 56789999999986532211100000 11111
Q ss_pred hcCCccEEEEEEeCCCCCC---HHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFS---QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~---~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+|++++|+|++++.+ .....++..+...+. ..|+++|+||+|...
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~ 127 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLT 127 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCc
Confidence 1223578999999975433 222445555555432 358999999999875
No 18
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=4.8e-17 Score=118.48 Aligned_cols=119 Identities=25% Similarity=0.287 Sum_probs=83.9
Q ss_pred EEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcC
Q 026970 23 VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD 102 (230)
Q Consensus 23 ~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (230)
+++|.+|+|||||+|+|++....... ...++|.......... .+..+.++||||+.+... .....+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 47899999999999999987642222 2334455554544443 667899999999986432 233444444445567
Q ss_pred CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 103 GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 103 ~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+|++++|+|+.+..+..+.....++.+. ..|+++|+||+|+..
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~ 119 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIK 119 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCC
Confidence 78999999999766666666666666543 258999999999876
No 19
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.74 E-value=1.2e-16 Score=117.17 Aligned_cols=123 Identities=23% Similarity=0.262 Sum_probs=82.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+|+++|++|+|||||+|.+++......... ...+...... .....+..+.++||||+.++.... ...+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRG-IYTDDDAQIIFVDTPGIHKPKKKL---GERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEE-EEEcCCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence 47899999999999999999999865332221 1222222222 222245789999999987643221 222333444
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+|++++|+|+.+..+.....+...+... ..|+++|+||+|+..
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVK 125 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccc
Confidence 556788999999999866566666666655543 247999999999873
No 20
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=2e-16 Score=116.96 Aligned_cols=126 Identities=19% Similarity=0.192 Sum_probs=80.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH-HHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV-KCI 97 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~-~~~ 97 (230)
+++|+++|.+|+|||||+|+|++........ ..+.+.......... .+..+.+|||||+.+........ +.+. ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~-e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGI-EKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccH-HHHHHHHH
Confidence 4789999999999999999999876432221 223333332233332 56778999999997653221111 1111 111
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
...+.++|++++|+|+.+..+.....++..+... ..|+++|+||+|+...
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGLILEE-----GKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc-----CCCEEEEEeccccCCc
Confidence 2344678999999999877766555544443331 2489999999998763
No 21
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=1.1e-16 Score=132.28 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=84.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
-|+|+|.+|||||||+|+|++... .....+.+|.......+...+...++|+||||+.........+...+.+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~---- 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH---- 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH----
Confidence 799999999999999999998764 22234556767766666554456799999999986543333344444443
Q ss_pred cCCccEEEEEEeCCC---C-CCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRS---R-FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~---~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...++++++|+|++. . .......+++.+......-...|+++|+||+|+..
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 456689999999861 1 11222445555554322113458999999999875
No 22
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=1.2e-16 Score=130.52 Aligned_cols=137 Identities=23% Similarity=0.309 Sum_probs=99.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHH-HHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK-EIVKC 96 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~-~~~~~ 96 (230)
.+.+|+++|.|++|||||+|+|+|....... ...++|.+.-...+.+ +++.+.++||.|+-.-..-.+.+.. ...+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 5699999999999999999999999864443 3556677766666665 8999999999998753221111000 00111
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~ 162 (230)
+ .....+|++++|+|++.+++..+......+.+. | +++++|+||||+++.+....+++-+
T Consensus 255 ~-~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g----~~~vIvvNKWDl~~~~~~~~~~~k~ 314 (444)
T COG1160 255 L-KAIERADVVLLVIDATEGISEQDLRIAGLIEEA-G----RGIVIVVNKWDLVEEDEATMEEFKK 314 (444)
T ss_pred H-hHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-C----CCeEEEEEccccCCchhhHHHHHHH
Confidence 1 223466899999999999999999999888886 3 3799999999999754355555433
No 23
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=2.4e-16 Score=127.84 Aligned_cols=126 Identities=19% Similarity=0.184 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
..|+|+|.++||||||+|+|++... .....+.+|..+....+.+.++..++++||||+.+.......+...+.+.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~--~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi-- 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI-- 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC--ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--
Confidence 3689999999999999999998753 222334567777766665545678999999999864443333444444433
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++++++|+|+++.-+.++ ..+...+..........|+++|+||+|+..
T Consensus 235 --e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 235 --ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred --hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 45689999999984433333 344455554322123468999999999875
No 24
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.73 E-value=2.9e-16 Score=119.69 Aligned_cols=128 Identities=25% Similarity=0.211 Sum_probs=81.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
+..++|+++|++|||||||+|+|++....... ....|.......+.+.+...+.+|||||+.+.. .......+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDL--PHQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCC--CHHHHHHHHHH
Confidence 34479999999999999999999987642221 123344444444444344489999999986532 12222223333
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+ ..+..+|++++|+|++++...... .+.+.+... +. ...|+++|+||+|+..
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~-~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GA-EDIPMILVLNKIDLLD 167 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-Cc-CCCCEEEEEEccccCC
Confidence 2 234578999999999855544432 334444443 21 1358999999999976
No 25
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.72 E-value=2.8e-16 Score=114.32 Aligned_cols=120 Identities=26% Similarity=0.265 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
.+|+++|++|+|||||+|++++....... ...+++.......... .+..+.++||||+.+...... .........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIE---KIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHH---HHHHHHHHH
Confidence 58999999999999999999987642222 2334444444333443 567899999999976543211 111122224
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+..+|++++|+|++++.+..+...+.. . ...|+++|+||+|+..
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~----~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL---P----ADKPIIVVLNKSDLLP 121 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh---h----cCCCEEEEEEchhcCC
Confidence 4567899999999986666555444433 1 2358999999999886
No 26
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=2e-16 Score=133.65 Aligned_cols=121 Identities=25% Similarity=0.276 Sum_probs=93.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|++|||||||+|+|++...... ...+++|.........+ .+..+.+|||||+... ...+...+.......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 489999999999999999998764222 23456677776666665 7788999999998642 233455566666667
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+|++++|+|+.++++..+..+.+++++. ..|+++|+||+|...
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~ 121 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-----GKPVILVANKIDGKK 121 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-----CCCEEEEEECccCCc
Confidence 7888999999999878888888888887763 247999999999875
No 27
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.72 E-value=5.4e-16 Score=122.96 Aligned_cols=126 Identities=23% Similarity=0.279 Sum_probs=81.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEe-eCC--eEEEEEeCCCCCCCCCCcHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSEFV 89 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~~~~ 89 (230)
..+|+++|++|+|||||+|+|++......... ....|.......... .++ ..+.||||||+++... ....
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-NSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-chhh
Confidence 47999999999999999999999876443211 112233222222211 234 4699999999987643 2333
Q ss_pred HHHHHHHHHhh------------------cCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 90 GKEIVKCIGMA------------------KDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 90 ~~~~~~~~~~~------------------~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
++.+..++... -..+|+++|+++.+. ++...+...++.+.. ..|+++|+||+|.+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCcC
Confidence 33333222111 125799999998863 567777777776654 24799999999998
Q ss_pred C
Q 026970 151 E 151 (230)
Q Consensus 151 ~ 151 (230)
.
T Consensus 157 ~ 157 (276)
T cd01850 157 T 157 (276)
T ss_pred C
Confidence 6
No 28
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.72 E-value=3.8e-16 Score=127.65 Aligned_cols=127 Identities=24% Similarity=0.182 Sum_probs=85.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
..++|+++|.+|+|||||+|+|++...... ...++|.+.....+.+.++..+.++||||+.... .....+.+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l--~~~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL--PHELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCcccccC--CHHHHHHHHHHH
Confidence 448999999999999999999999864222 2334565555555555467799999999985311 122333344433
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|++++...... .+...+... +. ...|+++|+||+|+..
T Consensus 264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLD 315 (351)
T ss_pred -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCC
Confidence 245678999999999865544433 233444443 31 1358999999999875
No 29
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=3e-16 Score=133.63 Aligned_cols=125 Identities=25% Similarity=0.224 Sum_probs=92.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
+..++|+++|.+|||||||+|+|++....... ..+++|.........+ .+..+.+|||||+... ...+...+...
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~ 110 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQ 110 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHH
Confidence 34579999999999999999999987643222 3455666666655554 6778999999998632 12234455555
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...++..+|++|+|+|++++.+..+..+...+... ..|+++|+||+|+..
T Consensus 111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~ 160 (472)
T PRK03003 111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDER 160 (472)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCc
Confidence 55667788999999999888887777777776642 358999999999864
No 30
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=1.5e-15 Score=128.50 Aligned_cols=128 Identities=22% Similarity=0.218 Sum_probs=88.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|.+|+|||||+|+|++....... ...++|.......+.. ++..+.++||||+.......+.........
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVS-DIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 34689999999999999999999988643332 2344555544444443 678899999999876433322111111111
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+...+|++++|+|+.++.+..+..++..+.+. + .|+++|+||+|+..
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEA-G----RALVIVVNKWDLVD 298 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCCC
Confidence 12345677999999999988888887777666553 2 47999999999874
No 31
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=2.2e-15 Score=127.32 Aligned_cols=126 Identities=21% Similarity=0.221 Sum_probs=87.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+++|.+|+|||||+|+|++....... ...++|.......+.. ++..+.+|||||+.......+..........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4479999999999999999999987643222 2344555544444443 6778999999998764432221111111111
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
..++..+|++++|+|+.++.+..+..++..+.+. + .|+++|+||+|+.
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA-G----KALVIVVNKWDLV 296 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-C----CcEEEEEECcccC
Confidence 2345678999999999988888887776665553 2 4899999999998
No 32
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=3.3e-16 Score=132.51 Aligned_cols=122 Identities=24% Similarity=0.247 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
++|+++|.+|||||||+|+|++....... ...++|.........+ ++..+.+|||||+.+.. ......+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 58999999999999999999988643222 2455666666665554 67899999999998622 2244455555556
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
++..+|++++|+|+.++++..+....+++.+. ..|+++|+||+|...
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~ 123 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPD 123 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCcc
Confidence 67788999999999878888887777777764 348999999999653
No 33
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.71 E-value=5.6e-16 Score=114.24 Aligned_cols=114 Identities=16% Similarity=0.156 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
+.|+++|.+|+|||||+|+|++..... ....++|........... .+..+.++||||.... ....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-----------TNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccccc--ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-----------HHHH
Confidence 469999999999999999999776422 222344544444444432 3678999999996431 1222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|+++.........+..+.. . ..|+++|+||+|+..
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~----~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-A----NVPFIVALNKIDKPN 116 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-c----CCCEEEEEEceeccc
Confidence 234567899999999986555555555555443 2 247999999999874
No 34
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.70 E-value=5.7e-16 Score=125.53 Aligned_cols=126 Identities=21% Similarity=0.212 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
..|+|+|.++||||||+|+|++.... ....+.+|..+....+.+.+...+.++||||+.+.......+...+.+.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~--va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi-- 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI-- 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--
Confidence 46899999999999999999987532 12234456666666565534488999999999764433333444444443
Q ss_pred hcCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSR---FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+++++++|+|+++. -...+ ..+.+.+..........|+++|+||+|+..
T Consensus 234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 456899999999743 11122 334444444322223468999999999875
No 35
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.70 E-value=1e-15 Score=112.31 Aligned_cols=116 Identities=22% Similarity=0.313 Sum_probs=76.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
.|+++|++|+|||||+|+|++...... .....++|....+....+..+..+.+|||||... +...+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHHh
Confidence 689999999999999999997532111 1112344555555544442367899999999632 2233334
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+.++|++++|+|+++.........+..+.. .+ ..|+++|+||+|+..
T Consensus 71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~---~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILEL-LG---IKRGLVVLTKADLVD 118 (164)
T ss_pred hhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hC---CCcEEEEEECccccC
Confidence 5668899999999975444444444443332 23 237999999999875
No 36
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.70 E-value=5.2e-16 Score=122.92 Aligned_cols=133 Identities=23% Similarity=0.288 Sum_probs=79.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEe-eCC--eEEEEEeCCCCCCCCCCcHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSEFV 89 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~~~~ 89 (230)
.++|+|+|.+|+|||||||+|++......... ....+.......... .++ ..+.|+||||+++.. .....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i-~n~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI-DNSDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-THCHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-cchhh
Confidence 37999999999999999999999876444210 111122222222221 122 378899999998753 33333
Q ss_pred HHHHHHHHHhhc-----------------CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 90 GKEIVKCIGMAK-----------------DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 90 ~~~~~~~~~~~~-----------------~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+..+..++...+ .++|++||+++++ .++.+.|...++.|.+. .++|.|+.|+|.+.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccC
Confidence 334433332221 4679999999985 46888888887777665 37999999999997
Q ss_pred CChhhHHHH
Q 026970 152 DNDETLEDY 160 (230)
Q Consensus 152 ~~~~~~~~~ 160 (230)
...+..+
T Consensus 157 --~~el~~~ 163 (281)
T PF00735_consen 157 --PEELQAF 163 (281)
T ss_dssp --HHHHHHH
T ss_pred --HHHHHHH
Confidence 5554443
No 37
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.70 E-value=2.4e-15 Score=113.81 Aligned_cols=125 Identities=18% Similarity=0.294 Sum_probs=79.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
+..++|+++|.+|+|||||+|+|++...........+.|....... .+..+.||||||+........ ....+...
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~-~~~~~~~~ 96 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKE-EKEKWQKL 96 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCch-HHHHHHHH
Confidence 4558999999999999999999998652112122334454444332 246899999999875432221 12222222
Q ss_pred HH---hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IG---MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~---~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+. .....++++++|+|.+.+.+..+..+.+.+.. . ..++++++||+|+..
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~----~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-Y----GIPVLIVLTKADKLK 149 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-c----CCcEEEEEECcccCC
Confidence 22 22234578888899876676665555555533 2 247899999999986
No 38
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=3.9e-15 Score=126.78 Aligned_cols=125 Identities=22% Similarity=0.274 Sum_probs=85.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+++|.+|+|||||+|+|++....... ...++|.......+.. ++..+.+|||||+....... ...+....+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~ 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASL 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHH
Confidence 4589999999999999999999998643222 2345555544444443 67889999999985422111 111122221
Q ss_pred --HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 --GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 --~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++..+|++++|+|++++.+..+..++..+... ..|+++|+||+|+..
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~-----~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA-----GRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 1345688999999999988888777666655442 248999999999875
No 39
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.69 E-value=8.7e-16 Score=113.06 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.+|+++|++|+|||||+|++++...... ..+..........+.. .....+.+|||||... +.....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSK--YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHH
Confidence 3799999999999999999998865221 1121222222222222 1235788999999632 223334
Q ss_pred hhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcc---cccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGK---KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~---~~~~~~ivv~tk~D~~~ 151 (230)
..+.++|++++|+|++++-+.. ...++..+.+.... ....|+++|+||+|+..
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 5567889999999998543322 24555556554432 13468999999999863
No 40
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=1.3e-15 Score=126.73 Aligned_cols=124 Identities=19% Similarity=0.148 Sum_probs=83.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
.|+|+|.++||||||+|+|++.... ....+.+|..+....+.+.++..++++||||+.........+...+.+.+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k--Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--- 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK--IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--- 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc--cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence 8999999999999999999987642 12345567777766666544778999999999764333333444444433
Q ss_pred cCCccEEEEEEeCCCC---CCH-HHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 101 KDGIHAVLVVFSVRSR---FSQ-EEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~---~~~-~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
.+++++++|+|+++. -.. ....+.+.+..........|.++|+||+|+.
T Consensus 235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 456899999999632 111 2234455555542222356899999999964
No 41
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.68 E-value=2.9e-15 Score=110.25 Aligned_cols=118 Identities=12% Similarity=0.135 Sum_probs=75.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.++|+++|++|+|||||++++.+....... ............+.. ++ ..+.+|||||... +...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQ--GNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccC--CCccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHH
Confidence 479999999999999999999876542211 111222222233333 33 4788999999532 2233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
....+..+|++++|+|+++..+... ..++..+.... ....|+++|+||+|+...
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccc
Confidence 3455677899999999985433222 45555555432 223589999999998753
No 42
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.68 E-value=1.6e-15 Score=111.31 Aligned_cols=113 Identities=19% Similarity=0.103 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE--EEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|.+|+|||||++++++....... ..+.....+ .... .....+.+|||||... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~ 65 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ----LSTYALTLYKHNAKFEGKTILVDFWDTAGQER-----------FQTM 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc----CCceeeEEEEEEEEECCEEEEEEEEeCCCchh-----------hhhh
Confidence 37999999999999999999876542211 112222221 1111 1234678999999643 2233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
...++.++|++++|+|++++.+... ..++..+.+.. ...|+++|+||+|+.
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLD 117 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCc
Confidence 4456778899999999985544333 45555555432 135899999999974
No 43
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.68 E-value=1.3e-15 Score=114.91 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=82.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcccc--------------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (230)
..+|+++|+.++|||||+++|++..... ......++|.......+.. ++..+.++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~--- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD--- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence 3789999999999999999998641100 0111345666655555543 677899999999742
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+...+......+|++++|+|+.......+...+..+... +. +++++++||+|+..
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~~ 132 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GV---PYIVVFLNKADMVD 132 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCCC
Confidence 333334455678999999999877877777777776653 32 24789999999874
No 44
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.68 E-value=1.8e-15 Score=111.72 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.+|+++|.+|+|||||++++++......... ..+.......+... ....+.+|||||.. .+.....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~~ 71 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMITIDGKQIKLQIWDTAGQE-----------SFRSITR 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ccceeEEEEEEEECCEEEEEEEEECCCcH-----------HHHHHHH
Confidence 7999999999999999999998764222221 11222211222221 22478899999942 2223344
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|++++.+... ..++..+.+... ...|+++|+||.|+..
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLES 123 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 56678899999999984333222 334444444321 2358999999999874
No 45
>PRK11058 GTPase HflX; Provisional
Probab=99.67 E-value=2.1e-15 Score=126.08 Aligned_cols=125 Identities=21% Similarity=0.127 Sum_probs=83.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
+.|+++|.+|||||||+|+|++...... ...++|.+.....+.+.+...+.++||||+... ........+...+ .
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl-~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATL-Q 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHH-H
Confidence 6899999999999999999999875422 233456655555555544458899999998542 1233334444443 3
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+|++++|+|++++....... +...+... +. ...|+++|+||+|+..
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DA-HEIPTLLVMNKIDMLD 323 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCCC
Confidence 456889999999998654444432 23334433 22 1358999999999875
No 46
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.1e-15 Score=111.18 Aligned_cols=130 Identities=16% Similarity=0.219 Sum_probs=91.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
..++|+|+|.+|||||.|+-++.+..+.....+. +..+.....+.. ++ ..++||||.|. ++++.
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sT--IGVDf~~rt~e~-~gk~iKlQIWDTAGQ-----------ERFrt 73 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYIST--IGVDFKIRTVEL-DGKTIKLQIWDTAGQ-----------ERFRT 73 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcce--eeeEEEEEEeee-cceEEEEEeeecccc-----------HHHhh
Confidence 3489999999999999999999988763332222 222333333333 33 47999999995 45667
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCC---hhhHHHHhcc
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGR 163 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~ 163 (230)
....+|+++|+||+|+|++++-+.+. ..|+..+.+..... .|.++|.||+|+.+.. .+..++|...
T Consensus 74 it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~ 143 (205)
T KOG0084|consen 74 ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVSTEEAQEFADE 143 (205)
T ss_pred hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCHHHHHHHHHh
Confidence 77889999999999999986655544 56777777765443 4899999999987643 2334455543
No 47
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=3.3e-16 Score=119.88 Aligned_cols=128 Identities=23% Similarity=0.213 Sum_probs=86.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+.+|+++|.||+|||||||+|++...... ..-+.+.....+.....++..+++|||||+++....+.+ .+.
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~----~r~ 109 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAE----HRQ 109 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchhhhHH----HHH
Confidence 34557888999999999999999996554222 212223322222222336688999999999985544333 334
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
.+....+..|.+++++++.++.-.-+..++..+.-.... .++++++|.+|...+
T Consensus 110 ~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p 163 (296)
T COG3596 110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEP 163 (296)
T ss_pred HHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhcc
Confidence 445556677899999999877666666666555554332 589999999998764
No 48
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.67 E-value=3.6e-15 Score=109.15 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=74.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
+|+++|++|+|||||++++++...... ..+..+.+.....+.. .+ ..+.+|||||... +.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 799999999999999999998865322 1222333332333332 23 3688999999532 223334
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|++++-+... ..++..+....+. ..|+++|+||+|...
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~ 119 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSD 119 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccc
Confidence 45678899999999975433222 3444444443222 358999999999854
No 49
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.6e-15 Score=124.32 Aligned_cols=125 Identities=26% Similarity=0.310 Sum_probs=93.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+.+++++|+|+||||||+|+|++.+...+. ..+|+|.+.-...+.. +|.++.++||.|+-++...-+.. -+.++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT-dI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~i--GIeRs 290 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVT-DIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERI--GIERA 290 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEec-CCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHH--HHHHH
Confidence 35689999999999999999999999875443 4567788877777765 89999999999998755333332 12233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
. .....+|.+|||+|++...+..+...+..+ ....|+++|.||.|+..+
T Consensus 291 ~-~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~------~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 291 K-KAIEEADLVLFVLDASQPLDKEDLALIELL------PKKKPIIVVLNKADLVSK 339 (454)
T ss_pred H-HHHHhCCEEEEEEeCCCCCchhhHHHHHhc------ccCCCEEEEEechhcccc
Confidence 2 233577999999999866777776666611 123489999999999863
No 50
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=2.9e-15 Score=126.18 Aligned_cols=125 Identities=17% Similarity=0.106 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
..|+|+|.++||||||+|+|++..... ...+.+|..+....+.. .+..++|+||||+.+.......+...+.+.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkI--adypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrh--- 233 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKI--ADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRH--- 233 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccc--cccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHH---
Confidence 468999999999999999999876422 23455666666665554 567899999999976433333344444443
Q ss_pred hcCCccEEEEEEeCCCCC----CHHH-HHHHHHHHHHhc---------ccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRF----SQEE-EAALHSLQTLFG---------KKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~----~~~~-~~~l~~l~~~~~---------~~~~~~~ivv~tk~D~~~ 151 (230)
...++++++|+|+++.- ...+ ..+...|..+.. .....|+++|+||+|+..
T Consensus 234 -ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~d 298 (500)
T PRK12296 234 -IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPD 298 (500)
T ss_pred -HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchh
Confidence 34568999999996311 1112 222333433321 123468999999999864
No 51
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.66 E-value=3.4e-15 Score=125.47 Aligned_cols=123 Identities=19% Similarity=0.166 Sum_probs=82.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+++|++|+|||||+|+|++....... ..+++|.......+.+ ++..+.+|||||+.++....+. ..+ ...
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs-~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~--~gi-~~~ 276 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVS-DIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVER--LGI-EKS 276 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHH--HHH-HHH
Confidence 4579999999999999999999987542222 2345566555555554 7788999999998754311111 111 112
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|++++.+..+. ++..+.. ...|+++|+||+|+..
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-----SKKPFILVLNKIDLKI 324 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-----CCCCEEEEEECccCCC
Confidence 2455678999999999867665544 4333322 1348999999999865
No 52
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.66 E-value=1.2e-15 Score=113.21 Aligned_cols=122 Identities=21% Similarity=0.174 Sum_probs=74.0
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCC
Q 026970 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG 103 (230)
Q Consensus 24 liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (230)
++|++|||||||+|+|++.... . ....++|............+..+.++||||+.+.....+.+...+. ..+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~----~~~~~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-V-ANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFL----AHIRR 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-c-cCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHH----HHHhc
Confidence 5899999999999999998641 1 1223445555444444322788999999998643222221222222 23456
Q ss_pred ccEEEEEEeCCCCC-----CH-HH-HHHHHHHHHHhcc-----cccceEEEEEeCCCCCC
Q 026970 104 IHAVLVVFSVRSRF-----SQ-EE-EAALHSLQTLFGK-----KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 104 ~~~il~v~d~~~~~-----~~-~~-~~~l~~l~~~~~~-----~~~~~~ivv~tk~D~~~ 151 (230)
+|++++|+|+.+.. .. .. ..+...+...... ....|+++|+||+|+..
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 79999999997542 22 12 2233333322111 12468999999999876
No 53
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.66 E-value=2.7e-15 Score=115.22 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|.+|+|||||++.+++.... ....+..+.+.....+...+ ...+.+|||||... +....
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~--~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~l~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG--KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGKML 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC--CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHHHH
Confidence 37899999999999999999977542 11112222222222233222 35788999999532 12334
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|+++.-+... ..++..+.+.... ....|+++|+||+|+..
T Consensus 68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 455678999999999985433332 4456666665432 22347899999999864
No 54
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.66 E-value=6.2e-16 Score=117.39 Aligned_cols=117 Identities=18% Similarity=0.171 Sum_probs=73.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
..+|+++|++|+|||||++.+++...... ..+..........+... ....+.||||||...+ ....
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-----------~~~~ 72 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEINGERVKLQIWDTAGQERF-----------RTIT 72 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCccccceeEEEEEEECCEEEEEEEEeCCCchhH-----------HHHH
Confidence 58999999999999999999998754211 11111111112222221 1246889999995421 1233
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++..++++++|+|++++-+... ..++..+.... ...|+++|+||+|+..
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~ 124 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 455677899999999985433222 33444444432 2358999999999865
No 55
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=5.7e-15 Score=131.42 Aligned_cols=124 Identities=23% Similarity=0.232 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
..++|+++|.+|||||||+|+|++....... ..+++|.........+ .+..+.+|||||+.... ..+...+....
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~ 348 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQA 348 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHH
Confidence 3478999999999999999999987642222 2456676665555554 67889999999986422 22444555666
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++..+|++++|+|+++.++..+..+.+.+... ..|+++|+||+|...
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQA 397 (712)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECccccc
Confidence 6677789999999999878888887777777652 358999999999864
No 56
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.66 E-value=4.3e-15 Score=109.38 Aligned_cols=117 Identities=12% Similarity=0.052 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.+|+++|.+|+|||||++++++...... ..+..........+... ....+.+|||||... +.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-----------~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSA--FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER-----------YRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence 5899999999999999999998764211 11111111211222211 124788999999542 222334
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++++|++++|+|.+++-+... ..++..+.+... ...|+++|+||+|+..
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~ 120 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMED 120 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCc
Confidence 56788999999999974422221 334444443321 2358999999999865
No 57
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66 E-value=4.2e-15 Score=109.69 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=73.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
..+|+++|++|+|||||++++++....... .+..........+.... ...+.++||||... +....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~-----------~~~~~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSF--ISTIGIDFKIRTIELDGKKIKLQIWDTAGQER-----------FRTIT 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCccc--ccCccceEEEEEEEECCEEEEEEEEeCCchHH-----------HHHHH
Confidence 379999999999999999999987642211 11111222222222211 24688999999532 12233
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|++++-+... ..++..+.+... ...|+++|+||+|+..
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 355678899999999975433222 344444444321 2358999999999874
No 58
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.66 E-value=2.3e-15 Score=114.01 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=77.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCc---cceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|++|+|||||+|+|+|......+....+ +|.....+ .......+.+|||||+.+.....+ .+...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~l~l~DtpG~~~~~~~~~----~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPY--PHPKFPNVTLWDLPGIGSTAFPPD----DYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceee--ecCCCCCceEEeCCCCCcccCCHH----HHHHH
Confidence 6899999999999999999999654322211111 12222221 111235789999999986543322 22221
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+.++|++++|.+ .+++..+..+++.+.+. + .++++|+||+|+..
T Consensus 76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~ 121 (197)
T cd04104 76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDL 121 (197)
T ss_pred --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchh
Confidence 23567788888753 37888888888888775 3 37899999999975
No 59
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.66 E-value=5.1e-15 Score=109.11 Aligned_cols=114 Identities=16% Similarity=0.173 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE--EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
.+|+++|++|+|||||++++++...... ...|....+. .+.. ++ ..+.+|||||... +..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD----CPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQER-----------FRA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC----CCcccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 6899999999999999999997754211 1112222221 1222 33 3678999999532 223
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+.++|++++|+|++++-+... ..++..+..... ...|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEA 121 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 33456678999999999985433222 334444433321 2358999999999865
No 60
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.66 E-value=1.4e-15 Score=114.44 Aligned_cols=117 Identities=21% Similarity=0.324 Sum_probs=84.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccc----------------cCCCCccceeeeeEEEE-eeCCeEEEEEeCCCCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTV-LKDGQVVNVIDTPGLF 80 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~-~~~~~~~~liDtPG~~ 80 (230)
+.++|+++|+.++|||||+++|++...... .....+.|......... ...+..++++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 347999999999999999999986542111 01123455555555554 1378899999999974
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
+ +...+......+|++++|+|+.+.+.......+..+... + .|+++|+||+|+.
T Consensus 82 ~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-~----~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 D-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-G----IPIIVVLNKMDLI 135 (188)
T ss_dssp H-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-T-----SEEEEEETCTSS
T ss_pred c-----------eeecccceecccccceeeeeccccccccccccccccccc-c----cceEEeeeeccch
Confidence 2 233344446678999999999878888888888777664 3 3699999999998
No 61
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.66 E-value=4.9e-15 Score=112.24 Aligned_cols=126 Identities=16% Similarity=0.125 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|.+|||||||++.+++...... ..+..+.......+.. ++ ..+.+|||||......... .+.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~---~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAG---QEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc--cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccch---hHHHHHH
Confidence 3799999999999999999998764221 1111111111122222 44 4678999999865432111 1112222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|++++-+... ..+.+.+.+... .....|+++|+||+|+..
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 234578899999999985543332 334444544321 123458999999999864
No 62
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.66 E-value=2.8e-15 Score=110.36 Aligned_cols=119 Identities=23% Similarity=0.192 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
.+|+++|.+|+|||||++++++...........+.+ ........ .....+.++||||...+. .....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~-~~~~~l~i~Dt~G~~~~~-----------~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCS-KNICTLQITDTTGSHQFP-----------AMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEEC-CEEEEEEEEECCCCCcch-----------HHHHH
Confidence 689999999999999999999876422211111111 11111111 123468899999976432 12224
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ivv~tk~D~~~ 151 (230)
.+..+|++++|+|++++-+... ..+++.+.+..+.. ...|+++|+||+|+..
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 4567899999999985544433 45566666654422 3458999999999864
No 63
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.66 E-value=2.2e-15 Score=119.01 Aligned_cols=116 Identities=17% Similarity=0.241 Sum_probs=82.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccc----------------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFK----------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (230)
+|+++|++|+|||||+++|+...... ......++|.......+.+ .+..+.++||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFT- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHH-
Confidence 58999999999999999997432100 0112346677666666666 77899999999976421
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
.....++..+|++++|+|+.+.....+...+..+... + .|+++++||+|+...+
T Consensus 79 ----------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~~a~ 132 (270)
T cd01886 79 ----------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-N----VPRIAFVNKMDRTGAD 132 (270)
T ss_pred ----------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCCC
Confidence 2233455667999999999877877777777666543 2 4789999999987543
No 64
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.66 E-value=2.4e-15 Score=112.87 Aligned_cols=114 Identities=19% Similarity=0.180 Sum_probs=77.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCC--------------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCc
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 86 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~ 86 (230)
+|+++|.+|+|||||+|+|++......... ..+.+.......... .+..+.++||||+.+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence 489999999999999999988765322110 122344444444443 4678999999997532
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......++..+|++++|+|+.+.........+..+.. ...|+++|+||+|+..
T Consensus 76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVG 128 (189)
T ss_pred -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcc
Confidence 1223334457799999999986666666665555544 2358999999999985
No 65
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.66 E-value=3.8e-15 Score=109.12 Aligned_cols=117 Identities=16% Similarity=0.160 Sum_probs=73.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.+|+++|++|+|||||++.|++....... ....+.......+... ....+.+|||||... +.....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDS--QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHH
Confidence 37999999999999999999987642221 1112222221222221 124688999999642 112233
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++.+|++++|+|++++.+... ..++..+..... ...|+++|+||+|...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 119 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLAD 119 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcch
Confidence 45678899999999985443332 344444444322 2358999999999864
No 66
>PRK04213 GTP-binding protein; Provisional
Probab=99.65 E-value=9.3e-15 Score=111.09 Aligned_cols=122 Identities=22% Similarity=0.201 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH--
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK-- 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~-- 95 (230)
..++|+++|.+|+|||||+|+|++.... .. ..+++|..... +.. . .+.+|||||++..........+.+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~-~~~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VG-KRPGVTRKPNH--YDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCceeeCceE--Eee-c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4579999999999999999999987632 21 22344443322 222 2 68999999986543322222233333
Q ss_pred --HHHhhcCCccEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 --CIGMAKDGIHAVLVVFSVRSRFS-----------QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 --~~~~~~~~~~~il~v~d~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
++......++++++|+|.++... ..+..++..+.. ...|+++|+||+|+..
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~ 144 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIK 144 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccC
Confidence 22223345688999999863211 112233333332 1348999999999865
No 67
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.65 E-value=2.3e-15 Score=110.88 Aligned_cols=117 Identities=13% Similarity=0.062 Sum_probs=73.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc--CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
+|+++|++|+|||||+|.|++....... ......|.......+.+ ++..+.+|||||.... .....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESL-----------RSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhh-----------HHHHH
Confidence 4899999999999999999875321111 11222344444444444 5789999999997532 12333
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
..+.++|++++|+|+++.-+ ......++...+.. ....|+++|+||+|+..
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRER--FEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred HHhCCCCEEEEEEECchHHH--HHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 45678899999999874321 11222233332221 12358999999999865
No 68
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.65 E-value=6.5e-15 Score=111.35 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc-cccccC-------------CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRR-AFKSRA-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~-~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~ 85 (230)
++|+++|.+|+|||||+++|++.. .+.... ...+.|.......+.. .+..+.+|||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence 689999999999999999998631 111110 1123344444344443 567899999999753
Q ss_pred cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+......++.++|++++|+|+++........++..+.. ...|+++|+||+|+..
T Consensus 78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE-----LGLKPIVVINKIDRPD 131 (194)
T ss_pred -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 22334455678899999999986554444444443322 1347999999999864
No 69
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.65 E-value=8.6e-15 Score=107.67 Aligned_cols=116 Identities=20% Similarity=0.184 Sum_probs=73.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|++|||||||++++++...... ..+..+.......+.. .+ ..+.++||||... +....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence 6899999999999999999998764211 1222222222222332 33 3688999999532 22333
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..++++++|+|+++..+... ..++..+.+.... ..|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 445677899999999974433322 3444444443221 358999999999864
No 70
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.65 E-value=3.8e-15 Score=109.14 Aligned_cols=116 Identities=15% Similarity=0.089 Sum_probs=72.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|.+|||||||++++++...+.... ..|.......+. ..+..+.++||||.... ......+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~---~~t~g~~~~~~~-~~~~~~~l~Dt~G~~~~-----------~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQII---VPTVGFNVESFE-KGNLSFTAFDMSGQGKY-----------RGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCccee---cCccccceEEEE-ECCEEEEEEECCCCHhh-----------HHHHHHH
Confidence 48999999999999999999864322111 112222222222 25678999999996531 2233345
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ivv~tk~D~~~ 151 (230)
+.++|++++|+|++++.+... ..++..+.+... .....|+++|+||+|+..
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 678899999999985543222 233333333211 112458999999999865
No 71
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.65 E-value=4.8e-15 Score=113.21 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=77.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc-----------------------------CCCCccceeeeeEEEEeeCCeEE
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSR-----------------------------ASSSGVTSTCEMQRTVLKDGQVV 71 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (230)
+|+++|++|+|||||+++|++....... ....++|.......+.+ ++..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999865432110 01245666665555554 67899
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.++||||+.+ +...+......+|++++|+|+.......+......+.. .+ .+++++|+||+|+..
T Consensus 80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~---~~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LG---IRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cC---CCcEEEEEEchhccc
Confidence 9999999632 22223334567899999999986665555544444433 23 235788999999864
No 72
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=5.6e-15 Score=112.33 Aligned_cols=116 Identities=14% Similarity=0.056 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeee--eEEEEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
.+|+++|.+|||||||++++++...... ...|.... ...+... ....+.+|||||...+ ..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~----~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~-----------~~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH----YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF-----------GG 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh-----------hh
Confidence 3799999999999999999998654211 11233222 2223321 2346889999996432 23
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc--ccccceEEEEEeCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~ 150 (230)
.....+.++|++++|+|++++.+... ..++..+..... .....|+++|+||+|+.
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 33456788999999999985443333 334444444322 12345899999999986
No 73
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.64 E-value=6.8e-15 Score=108.38 Aligned_cols=117 Identities=17% Similarity=0.160 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.+|+++|++|+|||||++++++...... ...+.+.......+... ....+.+|||||... +.....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~~ 69 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-----------FRTITS 69 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEECCCcHh-----------HHHHHH
Confidence 6899999999999999999997754221 11222222222223221 124688999999532 223334
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++.+|++++|+|++++-+... ..++..+.+... ...|+++|+||+|+..
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTD 121 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhccc
Confidence 55678899999999975332222 334444444321 2358999999999764
No 74
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.64 E-value=7e-15 Score=107.93 Aligned_cols=117 Identities=24% Similarity=0.214 Sum_probs=72.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|.+|+|||||++++++...... ..+.+.......... ++ ..+.+|||||..+.. ..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTD---YDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEFS-----------AM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcc---cCCCccceEEEEEEE-CCEEEEEEEEECCCCcchh-----------HH
Confidence 37999999999999999999997654211 111111111111222 33 467899999975422 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|+++.-+... ..++..+.+... ....|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEH 121 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccc
Confidence 3345567899999999985433222 334444444322 22458999999999864
No 75
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.64 E-value=1e-14 Score=108.28 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=74.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
.....+|+++|++|+|||||++++++...... ..|.......+.. ++..+.+|||||... +..
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~ 73 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDIDTI-----SPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------LRP 73 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHH
Confidence 34458999999999999999999998743111 1122222333333 567899999999642 122
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....++..+|++++|+|++++-+... ..++..+... ......|+++|+||+|+..
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPG 129 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECccccc
Confidence 33445678899999999975422221 2222222211 1112458999999999865
No 76
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.64 E-value=8.6e-15 Score=111.04 Aligned_cols=115 Identities=15% Similarity=0.193 Sum_probs=75.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.|+++|..|||||||++.++...+.. .....++.......+.. ++ ..+.+|||+|... +.....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE--ACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHHH
Confidence 68999999999999999998765421 11121222222222333 33 5788999999643 223345
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.++.++|++++|+|++++-+... ..++..+.+... ...|+++|+||+|+..
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~~ 119 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET 119 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 67789999999999986654444 345555554422 2358999999999864
No 77
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.64 E-value=1e-14 Score=116.06 Aligned_cols=128 Identities=25% Similarity=0.347 Sum_probs=87.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc----CCC--CccceeeeeEEEEee-CC--eEEEEEeCCCCCCCCCCcH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASS--SGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSE 87 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~----~~~--~~~t~~~~~~~~~~~-~~--~~~~liDtPG~~~~~~~~~ 87 (230)
+-.++|+++|++|.|||||+|+|++....... ... ...|........... ++ ..++++|||||++.... .
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s 99 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-S 99 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-c
Confidence 55689999999999999999999988542221 111 122333333332221 33 37889999999986433 3
Q ss_pred HHHHHHHHHHHhh------------------cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970 88 FVGKEIVKCIGMA------------------KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (230)
Q Consensus 88 ~~~~~~~~~~~~~------------------~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 148 (230)
..+.-+..++... -.++|++||++.++ +.+.+.+...++.+.+.+ ++|.|+.|+|
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI~KaD 173 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVIAKAD 173 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------Ceeeeeeccc
Confidence 3344443333221 14689999999874 578888888888887764 7999999999
Q ss_pred CCC
Q 026970 149 ELE 151 (230)
Q Consensus 149 ~~~ 151 (230)
.+.
T Consensus 174 ~lT 176 (373)
T COG5019 174 TLT 176 (373)
T ss_pred cCC
Confidence 987
No 78
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.64 E-value=8.2e-15 Score=107.46 Aligned_cols=116 Identities=18% Similarity=0.190 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|.+|||||||++++++...... ..+++.......+.. ++ ..+.+|||||...+. ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEK---YDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQFT-----------AMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc---cCCchhhhEEEEEEE-CCEEEEEEEEECCCccccc-----------hHH
Confidence 6899999999999999999997654211 111111111111222 33 457789999975432 222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+.++|++++|+|+++.-+... ..++..+.+... ....|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLED 120 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 345677899999999975433332 344455554322 22458999999999864
No 79
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.64 E-value=6.1e-15 Score=107.55 Aligned_cols=115 Identities=23% Similarity=0.283 Sum_probs=73.9
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCC
Q 026970 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG 103 (230)
Q Consensus 24 liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (230)
|+|.+|+|||||+|++++...... ...++|.......+.+ ++..+.+|||||+.+...... ...+....... .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 589999999999999998763222 2344555555555554 567899999999876543221 11222221111 58
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 104 ~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+|++++|+|+.+ .. ....+...+.+. ..|+++|+||+|+..
T Consensus 75 ~d~vi~v~d~~~-~~-~~~~~~~~~~~~-----~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 75 PDLIVNVVDATN-LE-RNLYLTLQLLEL-----GLPVVVALNMIDEAE 115 (158)
T ss_pred CcEEEEEeeCCc-ch-hHHHHHHHHHHc-----CCCEEEEEehhhhcc
Confidence 899999999974 22 222333333331 358999999999875
No 80
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.63 E-value=6.1e-15 Score=114.56 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=79.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (230)
+|+++|+.|+|||||+++|+........ ....+.|.......+.+ .+..+.++||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFI- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchH-
Confidence 5899999999999999999864321100 01223344444555554 67899999999987532
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
.....++..+|++++|+|+.+........+++.+.+. + .|+++++||+|+...+
T Consensus 79 ----------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~----~P~iivvNK~D~~~a~ 132 (237)
T cd04168 79 ----------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-N----IPTIIFVNKIDRAGAD 132 (237)
T ss_pred ----------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccccCCC
Confidence 2223344567999999999877776666666665543 2 4789999999987543
No 81
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.63 E-value=7.1e-15 Score=124.11 Aligned_cols=122 Identities=25% Similarity=0.292 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+++|.+|+|||||+|+|++....... ...++|.+.....+.. ++..+.++||||+.++....+. ..+...
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~~~ie~--~gi~~~- 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETDDEVEK--IGIERS- 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCccHHHH--HHHHHH-
Confidence 3479999999999999999999987642222 2344555554444444 6788999999998753211111 011222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|++++.+..+...+. . ....|+++|+||+|+..
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~---~----~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILE---E----LKDKPVIVVLNKADLTG 335 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHH---h----cCCCCcEEEEEhhhccc
Confidence 23456789999999998666655433332 2 12358999999999875
No 82
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.63 E-value=1.9e-14 Score=105.59 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|++|+|||||++++++...... .....+.......+.. ++ ..+.+|||||... +....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 3799999999999999999998765211 1122222222222332 33 4788999999532 22333
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|+.+.-+... ..++..+..... ...|+++|+||+|...
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~ 119 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhccc
Confidence 445677899999999974333322 234444444322 2458999999999765
No 83
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.63 E-value=1.4e-14 Score=108.08 Aligned_cols=119 Identities=14% Similarity=0.046 Sum_probs=73.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-----------CCeEEEEEeCCCCCCCCCCcH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------DGQVVNVIDTPGLFDFSAGSE 87 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~liDtPG~~~~~~~~~ 87 (230)
..+|+++|++|+|||||++++++...... ..+.+........+... ....+.+|||||..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPK--FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcc--CCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH-------
Confidence 37999999999999999999987754221 11111111111111111 12578899999942
Q ss_pred HHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 88 FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+.......+.++|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+..
T Consensus 75 ----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 75 ----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLED 134 (180)
T ss_pred ----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchh
Confidence 233444556678999999999985433222 344444444311 12358999999999864
No 84
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.63 E-value=1.3e-14 Score=106.71 Aligned_cols=112 Identities=15% Similarity=0.159 Sum_probs=71.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc
Q 026970 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (230)
Q Consensus 22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (230)
|+++|.+|||||||++.+++...... ...|.......+.. .+..+.+|||||...+. .....++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~----~~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~~-----------~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLES----VVPTTGFNSVAIPT-QDAIMELLEIGGSQNLR-----------KYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccc----ccccCCcceEEEee-CCeEEEEEECCCCcchh-----------HHHHHHH
Confidence 78999999999999999997754211 11122222223332 56789999999975422 2233456
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 102 DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 102 ~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+++|++++|+|.+++.+... ...++.+........|+++|+||.|+..
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~--~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPL--ARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred hhCCEEEEEEECCCHHHHHH--HHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 78899999999975432221 2223333322223568999999999865
No 85
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.63 E-value=7.3e-15 Score=107.58 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.+|+++|++|+|||||+++|++....... .+..+.......+... ....+.++||||.... .....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDL--AATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-----------RTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccc--CCcccceEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhH
Confidence 37999999999999999999987642211 1111222222222221 2357899999996431 12223
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
..++.+|++++|+|.++..+... ..++..+.+.. .....|+++|+||+|+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYS-TNNDIVKMLVGNKIDKE 119 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhC-CCCCCcEEEEEECCccc
Confidence 45578899999999975443332 33445555543 23345799999999987
No 86
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.63 E-value=1.1e-14 Score=105.85 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE--EEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR--TVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|++|+|||||+|.+++....... ..|....+.. +... ....+.++|+||... +...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~ 65 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY----KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSI 65 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCcc----CCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHH
Confidence 37999999999999999999988653321 1122222222 2211 235788999999632 2233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
....+..+|++++|+|++++-+... ..++..+..... ...|+++|+||+|..
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 4455677899999999974322222 334444444321 235899999999986
No 87
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.63 E-value=3.6e-14 Score=106.64 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=77.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|..|||||||+.++...... .......+.......+.. ++ ..+.+|||||... +..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~ 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCT 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 3479999999999999999999875431 111111222222222222 33 5788999999643 223
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....++.++|++++|+|++++.+... ..+++.+.+.. . ..|+++|+||.|+..
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~--~~piilVGNK~DL~~ 124 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-P--GVPKILVGNRLHLAF 124 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccchh
Confidence 34456688999999999986655444 45666665543 2 458999999999854
No 88
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.63 E-value=1.2e-14 Score=125.81 Aligned_cols=127 Identities=19% Similarity=0.262 Sum_probs=87.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+++|+++|++++|||||+++|.+...... ..+++|.......+.+.++..+.||||||+.++. ..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-----------~~ 151 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-----------SM 151 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcchh-----------hH
Confidence 3458999999999999999999998765322 2345666666665555344489999999986532 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHh
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL 161 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l 161 (230)
....+..+|++++|+++++.........+..+... ..|+++++||+|+...+...+.+.+
T Consensus 152 r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~-----~vPiIVviNKiDl~~~~~e~v~~~L 211 (587)
T TIGR00487 152 RARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA-----NVPIIVAINKIDKPEANPDRVKQEL 211 (587)
T ss_pred HHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcccccCCHHHHHHHH
Confidence 23456678999999999877666665555443331 2479999999998643333333333
No 89
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.63 E-value=6.1e-15 Score=108.77 Aligned_cols=114 Identities=22% Similarity=0.148 Sum_probs=73.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|.+|||||||+++++...... ....|....+...... ....+.+|||||...+...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 65 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK----KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL----------- 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC----CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc-----------
Confidence 379999999999999999998654311 1122333333222211 2347889999997543211
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|+++..+... ..++..+.+..+ ..|+++|+||+|+..
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~ 118 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKD 118 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhccc
Confidence 1234567899999999985433332 345555555433 458999999999863
No 90
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.63 E-value=1.6e-14 Score=105.95 Aligned_cols=118 Identities=19% Similarity=0.119 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
.+|+++|++|+|||||+|++++...........+.+.......+. .....+.+|||||... +......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~~-----------~~~~~~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQER-----------YRSLAPM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchHH-----------HHHHHHH
Confidence 689999999999999999999887532111111111111111111 1234788999999532 2222334
Q ss_pred hcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+.++|++++|+|+++.-+.. ...++..+..... ...|+++|+||+|...
T Consensus 70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 120 (163)
T cd01860 70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLES 120 (163)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 566789999999997432222 2444455555432 2357999999999764
No 91
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=6.1e-15 Score=111.16 Aligned_cols=116 Identities=20% Similarity=0.225 Sum_probs=71.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
+|+++|.+|||||||++++++...... .. +++.......... ++. .+.+|||||...+ .....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~--~~-~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVET--YD-PTIEDSYRKQVVV-DGQPCMLEVLDTAGQEEY-----------TALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc--CC-CchHhhEEEEEEE-CCEEEEEEEEECCCchhh-----------HHHHH
Confidence 489999999999999999986654111 11 1111111111222 333 5789999996432 12233
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~ 151 (230)
.++.++|++++|+|+++..+... ..++..+...... ....|+++|+||+|+..
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 45677899999999985443333 4555555554321 13458999999999864
No 92
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.62 E-value=1.1e-14 Score=106.55 Aligned_cols=115 Identities=22% Similarity=0.227 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|.+|+|||||+|++++....... . + |....+ ..... ++ ..+.+|||||.... ...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~--~-~-t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~l 65 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY--D-P-TIEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------SAM 65 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCc--C-C-cchheEEEEEEE-CCEEEEEEEEECCCCcch-----------HHH
Confidence 58999999999999999999987542111 1 1 211111 11222 33 35778999996432 123
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...++..+|++++|++.+++-+... ..++..+.+... ....|+++|+||+|+..
T Consensus 66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 3345567899999999975433222 234444444322 22458999999999864
No 93
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.62 E-value=2.1e-14 Score=105.99 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=71.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|.+|||||||++.+.+.. .... ..|.......+.. .+..+.++||||... +......+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~---~~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKV---APTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--Cccc---cCcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence 47999999999999999999762 1211 1122222223333 567899999999532 22333456
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+..+|+++||+|+++..+... ..++..+.+.. .....|+++|+||.|+..
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKN 114 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcC
Confidence 788899999999985432222 23333333211 112458999999999865
No 94
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.62 E-value=3.2e-14 Score=104.56 Aligned_cols=120 Identities=22% Similarity=0.301 Sum_probs=75.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH---
Q 026970 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG--- 98 (230)
Q Consensus 22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~--- 98 (230)
|+++|.+|+|||||+|.|++...........+.|...... . ....+.++||||+....... .....+...+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~D~~g~~~~~~~~-~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--N--VNDKFRLVDLPGYGYAKVSK-EVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--E--ccCeEEEecCCCccccccCH-HHHHHHHHHHHHHH
Confidence 7999999999999999999543322222222334333322 2 23388999999987654321 11122222222
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....++++++++|.+............++... + .|+++|+||+|...
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~ 124 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLK 124 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCC
Confidence 233456788999998755556656666666553 2 47999999999875
No 95
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.62 E-value=6.5e-14 Score=124.70 Aligned_cols=125 Identities=22% Similarity=0.240 Sum_probs=85.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
..++|+++|.+|||||||+|+|++....... ...++|.......+.+ ++..+.+|||||+........ ..+....+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~--~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLT--GAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccch--hHHHHHHH
Confidence 3489999999999999999999998642222 2344555544333443 677899999999864222111 11222221
Q ss_pred --HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 --GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 --~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++..+|++++|+|++++.+..+..++..+.+. ..|+++|+||+|+..
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~~ 575 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-----GRALVLVFNKWDLMD 575 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEEchhcCC
Confidence 2345778999999999888888877666655442 248999999999875
No 96
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.62 E-value=1.2e-14 Score=106.74 Aligned_cols=116 Identities=18% Similarity=0.164 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
+|+++|++|||||||++++++....... . +++........... ....+.+|||||..... .....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~--~-~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-----------~~~~~ 67 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDY--D-PTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS-----------AMRDQ 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccc--C-CchhhhEEEEEEECCEEEEEEEEECCCcccch-----------HHHHH
Confidence 7999999999999999999987642211 1 11111111112221 12467899999976432 22223
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+..+|++++|+|++++-+... ..+...+.+.... ...|+++|+||+|+..
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLES 119 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 4567799999999985433222 3334444443221 2458999999999864
No 97
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.62 E-value=1.5e-14 Score=106.96 Aligned_cols=112 Identities=15% Similarity=0.079 Sum_probs=72.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|.+|||||||++++.+... .. ...|....+..+.. .+..+.++||||..... ......
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~---~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~~-----------~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ---PIPTIGFNVETVEY-KNLKFTIWDVGGKHKLR-----------PLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC---cCCcCceeEEEEEE-CCEEEEEEECCCChhcc-----------hHHHHH
Confidence 589999999999999999998643 11 12233333333333 56789999999975422 223345
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
+.++|+++||+|++++-+.. ....++...+.. ....|+++|+||+|+..
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVS--EAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred hccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 67789999999997542221 122333333221 12258999999999864
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.62 E-value=3.7e-14 Score=104.78 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=73.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+|+++|.+|+|||||++++....... . . .|....+..+.. .+..+.+|||||... +.....
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~--~-~--~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 71 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT--T-I--PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWR 71 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc--c-c--CCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence 4799999999999999999998654311 1 1 122222222332 567899999999642 223334
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~ 151 (230)
.++.++|++++|+|+++..+.. ....++.+.+... ...|+++|+||+|+..
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRID--EARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHhccCCEEEEEEeCCchhhHH--HHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 5677899999999998543222 2223333333211 2358999999999864
No 99
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.62 E-value=1.1e-14 Score=107.41 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=71.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|.+|||||||++++++...... ....................+.+|||||..... ......
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~~~ 67 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN---VPRVLPEITIPADVTPERVPTTIVDTSSRPQDR-----------ANLAAE 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc---CCCcccceEeeeeecCCeEEEEEEeCCCchhhh-----------HHHhhh
Confidence 789999999999999999998764221 111111111111111134578899999975321 112233
Q ss_pred cCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+..+|++++|+|++++.+... ..++..+.... . ..|+++|+||+|+.+
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~--~~pviiv~nK~Dl~~ 117 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-V--KVPIILVGNKSDLRD 117 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhccc
Confidence 467899999999975444333 24555555532 2 458999999999875
No 100
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.62 E-value=9.8e-15 Score=108.82 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccc------cC-------CCCccceeeeeEEEEe----eCCeEEEEEeCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKS------RA-------SSSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDF 82 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~------~~-------~~~~~t~~~~~~~~~~----~~~~~~~liDtPG~~~~ 82 (230)
++|+++|++|+|||||+++|++...... .. ...+++.........+ ..+..+.+|||||+.++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 4799999999999999999987431100 00 0112233222222211 13457889999998642
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......++.++|++++|+|+++..+..+...+..+.. ...|+++|+||+|+..
T Consensus 81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-----NNLEIIPVINKIDLPS 133 (179)
T ss_pred -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----cCCCEEEEEECCCCCc
Confidence 1223345567899999999986665555443333222 1247999999999754
No 101
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=2.2e-14 Score=108.16 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|.+|+|||||++.+++....... .............+.. ++ ..+.||||||... +....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGN-FIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQER-----------FRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccC-cCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHhh
Confidence 37999999999999999999877542111 1111111111111221 22 4788999999422 22233
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|++++.+... ..++..+.+.... ..|+++|+||+|+..
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~ 120 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSG 120 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchh
Confidence 445678899999999985433322 4455566554322 358999999999864
No 102
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.62 E-value=1.3e-14 Score=111.73 Aligned_cols=117 Identities=16% Similarity=0.062 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE--EEee-CCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR--TVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
....+|+++|.+|||||||+++++....... ...|....+.. +... ....+.+|||||...+.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~----~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------- 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------- 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCc----cCCccceeEEEEEEEECCeEEEEEEEECCCchhhh----------
Confidence 4558999999999999999999876543111 11222222221 2211 23588999999975432
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....++.++|++|+|+|.+++.+... ..|+..+.+.. ...|+++|+||+|+..
T Consensus 77 -~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 77 -GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 131 (219)
T ss_pred -hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhh
Confidence 222345678899999999986544333 35555555542 2358999999999753
No 103
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.61 E-value=1.9e-14 Score=106.54 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.+|+++|++|+|||||++++++...... .............+... ....+.+|||||...+. . ....
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~---~~~~ 70 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPER--TEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR-------K---SMVQ 70 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCc--cccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH-------H---hhHH
Confidence 6899999999999999999987654211 11111111111222221 12578899999954211 1 1233
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|++++-+... ..++..+.... .....|+++|+||+|+..
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS-LPNEVPRILVGNKCDLRE 123 (170)
T ss_pred HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc-CCCCCCEEEEEECccchh
Confidence 45678899999999985544333 34444444432 223458999999999864
No 104
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.61 E-value=2.1e-14 Score=106.55 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|.+|+|||||++.+.+...... ...|....+. .+.. ++ ..+.+|||||...+ ...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~----~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~l 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDY----HDPTIEDAYKQQARI-DNEPALLDILDTAGQAEF-----------TAM 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCC----cCCcccceEEEEEEE-CCEEEEEEEEeCCCchhh-----------HHH
Confidence 6899999999999999999987654211 1112221111 2222 33 46889999996532 233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...++..+|++++|+|++++.+... ..+...+.+.. .....|+++|+||+|+..
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLES 121 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhhh
Confidence 3455678899999999986666554 33444555432 223458999999999754
No 105
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.61 E-value=1.7e-14 Score=107.35 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=73.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+|+++|.+|+|||||++.+....... ...|....+..... ....+.+|||||... +.....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~ 75 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVT-----TIPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLWR 75 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 4899999999999999999996443211 11233333333333 567899999999643 223344
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~ 151 (230)
.++.++|++++|+|++++.+.. ...+++...+... ...|+++|+||.|+..
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRID--EAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 5678899999999998543222 2223333332211 2358999999999864
No 106
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=9.3e-15 Score=109.93 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.+|+++|.+|||||||++++++...... .............+... ....+.+|||||... +.....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~-----------~~~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSES--TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQER-----------FRSLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCCcHH-----------HHhhHH
Confidence 3799999999999999999998765221 11111222222222221 124678999999542 122334
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+.++|++++|+|++++-+... ..++..+...... ..|+++|+||+|+..
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVN 119 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCcc
Confidence 56678899999999985433222 3344444443222 258999999999874
No 107
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.61 E-value=2.5e-14 Score=104.79 Aligned_cols=113 Identities=23% Similarity=0.177 Sum_probs=71.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEe---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
+|+++|.+|+|||||++++++...... .. .|....+ ..+.. .....+.+|||||... +..
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~ 66 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKD--YK--KTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDA 66 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC--CC--CcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHH
Confidence 799999999999999999998654211 11 1222222 12222 1235789999999432 223
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+++.+|++++|++++++-+... ..++..+.... ...|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 67 ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLD 120 (162)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhccc
Confidence 33456678899999999974432222 33333343322 2358999999999875
No 108
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.61 E-value=1.7e-14 Score=106.67 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|++|+|||||+|++++....... ............+.. .+ ..+.+|||||.... ....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVTV-DDKLVTLQIWDTAGQERF-----------QSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc--CCccceEEEEEEEEE-CCEEEEEEEEeCCChHHH-----------HhHH
Confidence 37999999999999999999987642211 111111111122222 23 35679999996421 1223
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
...+.++|++++|+|+.++.+... ..+...+...+.. ....|+++|+||+|+..
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 345677899999999975433222 2333333333221 12458999999999974
No 109
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.61 E-value=1.5e-14 Score=106.27 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|.+|+|||||+++++..... .. ..+ |....+ ..+... ....+.+|||||...+. ...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~-~~--~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV-EK--YDP-TIEDSYRKQVEVDGQQCMLEILDTAGTEQFT-----------AMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC-cc--cCC-cchheEEEEEEECCEEEEEEEEECCCcccch-----------hHH
Confidence 58999999999999999999865431 11 111 221111 122221 13456799999975322 233
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+.++|++++|+|.++.-+... ..++..+.+... ....|+++|+||+|+..
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 120 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence 345677899999999874433332 344454544321 23458999999999864
No 110
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.61 E-value=2.3e-14 Score=104.83 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=70.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|.+|+|||||++++++...... ..|....+..+.......+.++||||... +.......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----IPTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-----cCccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 489999999999999999998765221 11222222333333456899999999642 12233345
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
+..+|++++|+|+++..+... ...++.+.+.. ....|+++|+||+|+..
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDE--SQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred hccCCEEEEEEECCcHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 667899999999975432221 22222222211 12458999999999854
No 111
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.61 E-value=3.3e-14 Score=105.65 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=73.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+|+++|.+|+|||||++.+++...... ..|....+..... ++..+.++||||... +.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHHH
Confidence 47999999999999999999987654211 1233333333333 567899999999742 223334
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~ 151 (230)
.++.++|++++|+|++++-+.. .....+.+.+... ...|+++++||+|+..
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~--~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLP--LTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 5567889999999998542211 1122233322211 2358999999999864
No 112
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.61 E-value=6.1e-14 Score=105.16 Aligned_cols=116 Identities=9% Similarity=0.055 Sum_probs=73.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|.+|||||||++.+.+...... ..|.......+.. .+..+.++||||... ....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 4458999999999999999999998753211 1122222333333 567899999999642 1233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
...++.++|++++|+|+++.-.. ......+.+.+.. ....|+++|+||+|+..
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERF--AESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 34566789999999999743111 1122223332221 12358999999999753
No 113
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.61 E-value=2.4e-14 Score=105.12 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc-cccccCCCCccceeeee--EEEEe--eCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEM--QRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~-~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
.+|+++|.+|||||||++++.+.. .+... ...|....+ ..+.. .....+.+|||||.. .+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN---YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-----------LYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcc---CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-----------HHH
Confidence 379999999999999999998542 22111 112222211 11222 133688999999942 122
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|+++..+... ..++..+.... ...|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 333455678899999999985433222 34444444432 2358999999999865
No 114
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.61 E-value=2.3e-14 Score=113.18 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccC--------------------CCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA--------------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (230)
++|+++|+.|+|||||+++|+......... ...+.+.......+.+ .+..+.+|||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 789999999999999999998543211100 0123333344445554 6789999999997
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
.++. ......+..+|++++|+|+++........+++..... ..|+++++||+|....+
T Consensus 82 ~df~-----------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~-----~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 82 EDFS-----------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR-----GIPIITFINKLDREGRD 139 (267)
T ss_pred hHHH-----------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc-----CCCEEEEEECCccCCCC
Confidence 6432 1122334567999999999877765555555444331 24799999999986543
No 115
>PLN03118 Rab family protein; Provisional
Probab=99.61 E-value=3.6e-14 Score=108.71 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=73.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
.....+|+++|.+|+|||||+++|++... ... .+..........+...+ ...+.||||||...+.
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------- 76 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV--EDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR----------- 76 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCC--CCc-CCCceeEEEEEEEEECCEEEEEEEEECCCchhhH-----------
Confidence 34458999999999999999999998754 111 11112222222233211 2478899999965421
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHH-H-HHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEE-A-ALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~-~-~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|.+++-+.... . +...+.. +......++++|+||+|+..
T Consensus 77 ~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 77 TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccc
Confidence 2233456778999999999854333322 1 2222322 22222347899999999864
No 116
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.60 E-value=3.3e-14 Score=103.98 Aligned_cols=117 Identities=14% Similarity=0.084 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.+|+++|.+|+|||||+|++++...... .....+.......+... ....+.+|||||... +.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEK--HESTTQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC--cCCccceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhH
Confidence 3799999999999999999998764221 11111122212222221 223688999999532 112223
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|+++.-+... ..+++.+...... ..|+++|+||+|...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~ 119 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER 119 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 34567899999999975433222 3444445544332 458999999999874
No 117
>CHL00071 tufA elongation factor Tu
Probab=99.60 E-value=1.8e-14 Score=120.65 Aligned_cols=120 Identities=15% Similarity=0.215 Sum_probs=84.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccc--------------cCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (230)
..+..+|+++|++++|||||+++|++...... .....++|.......+.. ++..+.|+||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~- 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA- 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChH-
Confidence 34558999999999999999999997532110 111245666655444443 56789999999963
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+...+......+|++++|+|+...+...+...+..+... +. +++++++||+|+..
T Consensus 87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~---~~iIvvvNK~D~~~ 142 (409)
T CHL00071 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GV---PNIVVFLNKEDQVD 142 (409)
T ss_pred ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEccCCCC
Confidence 2233333445678999999999877877777777766543 42 24788999999975
No 118
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=2.1e-14 Score=109.91 Aligned_cols=119 Identities=18% Similarity=0.115 Sum_probs=73.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|.+|+|||||++.+++...... ..+.+........+....+ ..+.+|||||... +...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 68 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSI 68 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHH
Confidence 37899999999999999999998764221 1121222221112222122 4788999999532 1223
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++-+... ..++..+.+.... ...++++|+||+|+..
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLES 123 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEcccccc
Confidence 3355678899999999985433332 3444444443322 2346889999999865
No 119
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.60 E-value=1.6e-14 Score=107.72 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|.+|+|||||++.+.+...... ...|....+. .+... ....+.+|||||...+. ...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~-----------~~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPET----YVPTVFENYTASFEIDEQRIELSLWDTSGSPYYD-----------NVR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCC----cCCceEEEEEEEEEECCEEEEEEEEECCCchhhh-----------hcc
Confidence 5899999999999999999997754211 1112222221 12221 22468899999964321 223
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+++++|++++|+|++++-+... ..|+..+.+... ..|+++|+||+|+..
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~ 119 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRT 119 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhc
Confidence 356788999999999986655554 356666666532 358999999999753
No 120
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.60 E-value=2.5e-14 Score=126.70 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=85.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+++|+++|+.++|||||+++|.+..+... ...++|.....+.+.+ ++..++||||||+.++. ..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~m 353 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------AM 353 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------hH
Confidence 4558999999999999999999987665322 2345676666666665 57889999999987642 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+++++.........+...... ..|+++++||+|+..
T Consensus 354 ~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~-----~vPiIVviNKiDl~~ 403 (787)
T PRK05306 354 RARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA-----GVPIIVAINKIDKPG 403 (787)
T ss_pred HHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc-----CCcEEEEEECccccc
Confidence 22445667999999999877766666665544332 247999999999864
No 121
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.60 E-value=1.8e-14 Score=107.62 Aligned_cols=117 Identities=16% Similarity=0.069 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
+...+|+++|.+|+|||||+++++....... ...|....+. .+... ....+.+|||+|... +.
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~----~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~-----------~~ 67 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN----YVPTVFENYTASFEIDTQRIELSLWDTSGSPY-----------YD 67 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCc----cCCceeeeeEEEEEECCEEEEEEEEECCCchh-----------hH
Confidence 3457999999999999999999987654211 1112222221 12221 224688999999532 22
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+++++|++++|+|++++-+... ..|+..+.+... ..|+++|+||+|+..
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~ 123 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 123 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhc
Confidence 333456789999999999986655444 356666666432 358999999999753
No 122
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.60 E-value=3.3e-14 Score=105.09 Aligned_cols=121 Identities=16% Similarity=0.040 Sum_probs=73.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
...+|+++|.+|+|||||++++++....... ............+... ....+.+|||||... +...
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~ 70 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER-----------FRSL 70 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCc--CCceeeEEEEEEEEECCeEEEEEEEeCCChHH-----------HHHh
Confidence 4589999999999999999999876542211 1111111111122221 224678899999532 2233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|++++++-+... ..+...+...... ....|+++|+||+|+..
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (170)
T cd04116 71 RTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE 128 (170)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence 4456678899999999985433322 3344444443321 12358999999999863
No 123
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.60 E-value=2.4e-14 Score=109.91 Aligned_cols=113 Identities=24% Similarity=0.150 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
.+|+++|.+|+|||||++.+++..+... ..|....+....+ ....+.+|||||...+. .....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~~-----------~l~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYLKQW-GPYNISIWDTAGREQFH-----------GLGSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEEEEe-eEEEEEEEeCCCcccch-----------hhHHH
Confidence 3789999999999999999998765211 1233333332222 44678999999975422 22234
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
++..+|++|+|+|++++-+... ..++..+.+... ...|+++|+||+|+..
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~--~~~piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTAN--EDCLFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 5678899999999986544443 233444444322 2358999999999864
No 124
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.60 E-value=2.3e-14 Score=106.06 Aligned_cols=115 Identities=19% Similarity=0.104 Sum_probs=72.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE--EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
+|+++|.+|+|||||++++++...... ...|....+. .+... ....+.+|||||... +....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKN----YKATIGVDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhH
Confidence 689999999999999999998754211 1223322222 22221 234789999999642 22333
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+.++|++++|+|++++-+... ..++..+.+.... ...|+++|+||.|+.+
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSS 120 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCc
Confidence 456778999999999975322222 3444444333221 1247899999999754
No 125
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.60 E-value=5.8e-14 Score=101.92 Aligned_cols=118 Identities=25% Similarity=0.206 Sum_probs=76.2
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCC
Q 026970 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG 103 (230)
Q Consensus 24 liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (230)
++|++|+|||||+|+|++....... ...+.|...............+.++||||+.+........ ..........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~----~~~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER----EELARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH----HHHHHHHHHh
Confidence 5899999999999999987654322 2333344444443443236789999999998755433321 1222234456
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 104 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 104 ~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+|++++|+++..........+...... ...|+++|+||+|+..
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLP 118 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCC
Confidence 799999999985555444432222221 2358999999999986
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.60 E-value=2.5e-14 Score=104.49 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=71.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|.+|+|||||++++++... . ....|.......+.. .+..+.+|||||.... .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~---~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--V---TTIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--C---CCCCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence 589999999999999999998862 1 112222233333333 5678999999996532 1233345
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+..+|++++|+|++++-+... ..++..+.... .....|+++|+||+|...
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPG 114 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCcc
Confidence 567899999999984322111 22222222211 122458999999999875
No 127
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-14 Score=112.46 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=91.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH-HHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-VGKEIVK 95 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~-~~~~~~~ 95 (230)
...++|+++|.+++|||||.|.++|...+.. +....|+......+......++.|+||||+......... ....+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~v--S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAV--SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccc--cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 3458999999999999999999999998554 334445555555555557789999999999865432221 1222223
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+...+|.+++|+|+.+.-+......+..+.++.. .|.++|.||.|.+.
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k 199 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLK 199 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcch
Confidence 33455567899999999975444445667777777632 47999999999876
No 128
>PLN03110 Rab GTPase; Provisional
Probab=99.60 E-value=5.3e-14 Score=108.13 Aligned_cols=119 Identities=16% Similarity=0.115 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
...+|+++|++|+|||||+++|++...... ....+........+... ....+.||||||... +...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~--~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-----------~~~~ 77 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLE--SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-----------YRAI 77 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeEEEEEEEEEECCEEEEEEEEECCCcHH-----------HHHH
Confidence 447999999999999999999998764221 11111122212222221 224788999999532 2234
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..++++++|+|+++.-+... ..++..+..... ...|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 78 TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNH 131 (216)
T ss_pred HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhccc
Confidence 4556678899999999975433333 345555555432 2358999999999754
No 129
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.60 E-value=2.9e-14 Score=107.62 Aligned_cols=116 Identities=16% Similarity=0.269 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc---ccc--cCCCCccceeeeeEEEEee-------------CCeEEEEEeCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRA---FKS--RASSSGVTSTCEMQRTVLK-------------DGQVVNVIDTPGLFD 81 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~---~~~--~~~~~~~t~~~~~~~~~~~-------------~~~~~~liDtPG~~~ 81 (230)
.+|+++|++|+|||||+++|++... +.. .....++|.........+. .+..+.+|||||+.+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 3799999999999999999997311 100 1112234555444433331 256899999999731
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+...+......+|++++|+|+.+..+..+...+... ...+ .|+++|+||+|+..
T Consensus 81 -----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~-~~~~----~~~iiv~NK~Dl~~ 134 (192)
T cd01889 81 -----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIG-EILC----KKLIVVLNKIDLIP 134 (192)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHH-HHcC----CCEEEEEECcccCC
Confidence 222222334567899999999866655554433332 2222 37999999999875
No 130
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.60 E-value=3.7e-14 Score=106.24 Aligned_cols=118 Identities=14% Similarity=0.083 Sum_probs=71.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe--eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|.+|||||||++++++...... . +..........+.. ..+..+.+|||||... +...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~--~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-V--PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-C--CccccceeEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence 47899999999999999999987654211 1 11111111111211 1346899999999532 1223
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...++..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|...
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccc
Confidence 3345678899999999974322221 223333333222 22458999999999864
No 131
>PTZ00369 Ras-like protein; Provisional
Probab=99.60 E-value=2.7e-14 Score=107.51 Aligned_cols=117 Identities=24% Similarity=0.211 Sum_probs=73.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|.+|+|||||++++++....... ..|....+. .+... ....+.+|||||..++. ..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEY----DPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS-----------AM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCc----CCchhhEEEEEEEECCEEEEEEEEeCCCCccch-----------hh
Confidence 489999999999999999999976542111 112211111 11211 22457789999976532 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...++.++|++++|+|++++-+... ..+...+.+... ....|+++|+||+|+..
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDS 124 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 3345668899999999985543222 344455554322 22458999999999754
No 132
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.60 E-value=1.8e-14 Score=106.50 Aligned_cols=116 Identities=18% Similarity=0.102 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.+|+++|.+|+|||||+++|++....... .+............ .....+.+|||||..... ....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEY---VPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccch
Confidence 37999999999999999999987642111 11111111111111 123468899999976532 1112
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
..+..+|++++|+|++++.+... ..++..+..... ..|+++|+||+|+..+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD 119 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc
Confidence 34467899999999974332222 334444444322 4689999999998763
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.60 E-value=7e-14 Score=103.62 Aligned_cols=117 Identities=18% Similarity=0.110 Sum_probs=73.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|++|+|||||++.|.+...... ..|.......+.. .+..+.++||||... +...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~ 74 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPY 74 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 4468999999999999999999998753211 1122222223333 577899999999632 2233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...++..+|++++|+|+.+...... ...+..+.+.. .....|+++++||+|...
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLAT 129 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCcc
Confidence 4445678899999999974321111 22222222111 112358999999999865
No 134
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.60 E-value=2.8e-14 Score=104.66 Aligned_cols=113 Identities=16% Similarity=0.164 Sum_probs=72.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
+|+++|++|+|||||++.+++...... ...|....+ ..+.. .+ ..+.+|||||...+ ...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSS----HISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERY-----------QTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCC----CCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhH-----------Hhh
Confidence 689999999999999999987754221 122332222 22222 33 46789999995431 123
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...++..+|++++|+|++++-+... ..++..+..... ...|+++|.||.|+..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQ 119 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 3455678899999999985533332 334444444321 2358999999999864
No 135
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.59 E-value=2.8e-14 Score=104.72 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|.+|+|||||++.++........ .++........+.. ++ ..+.+|||||...+. ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKY---DPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC---CCchhheEEEEEEE-CCEEEEEEEEECCCccccc-----------chH
Confidence 58999999999999999999876542211 11111111122222 33 357789999975432 222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++.++|++++|+|.+++-+... ..++..+.+... ....|+++|+||+|+..
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLES 120 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 234567899999999985433222 444555555422 23458999999999754
No 136
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.59 E-value=5.5e-14 Score=102.90 Aligned_cols=112 Identities=14% Similarity=0.088 Sum_probs=70.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|.+|+|||||++++...... . . .+|.......+.. ....+.+|||||... +......+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~--~--~pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-T--T--IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-c--c--CCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 7899999999999999999654431 1 1 1122222222332 567899999999742 22333456
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~ 151 (230)
+.++|+++||+|++++.+.. ...+++.+..... ...|+++++||.|+..
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIG--EAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 78899999999998542221 2223333332211 1358999999999864
No 137
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.59 E-value=4.2e-14 Score=103.37 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=70.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|++|+|||||++++........ ..|.......+.. .+..+.+|||||...+ ......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGQTSI-----------RPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEEE-CCEEEEEEECCCCHHH-----------HHHHHHH
Confidence 589999999999999999976654211 1132222333333 5678999999997531 1233355
Q ss_pred cCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+..+|++++|+|++++.+.. ...+...+... .....|+++|+||+|+..
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE--ELKGAVLLVFANKQDMPG 114 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCcEEEEEeCCCCCC
Confidence 67889999999997532211 12222222221 112458999999999865
No 138
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.59 E-value=5.9e-14 Score=102.04 Aligned_cols=112 Identities=22% Similarity=0.184 Sum_probs=70.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc
Q 026970 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (230)
Q Consensus 22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (230)
|+++|++|+|||||+|+|.+...... . ..|.......+.. .+..+.++||||... +.......+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~--~--~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSED--T--IPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcC--c--cCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 78999999999999999998764221 1 1232233333332 457889999999642 223334456
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 102 DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 102 ~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
..+|++++|+|+++.... ......+...... ....|+++|+||+|...
T Consensus 66 ~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 66 RGVNAIVYVVDAADRTAL--EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred hcCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 778999999999743211 1112223332211 12358999999999875
No 139
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.59 E-value=5.3e-14 Score=106.58 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=76.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEee------CCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK------DGQVVNVIDTPGLFDFSAGSEFVGKE 92 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~------~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (230)
+|+++|.+|+|||||++.+++...... ...|....+ ..+... ....+.+|||+|...
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~----~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~----------- 66 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGR----PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES----------- 66 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC----CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh-----------
Confidence 789999999999999999998764222 122322211 112211 124688999999643
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-----------------ccccceEEEEEeCCCCCC
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-----------------KKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-----------------~~~~~~~ivv~tk~D~~~ 151 (230)
+......+++++|++++|+|++++-+... ..|+..+....+ .....|+++|+||.|+.+
T Consensus 67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 22344467789999999999986655444 456665554311 112358999999999865
No 140
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.59 E-value=1.5e-13 Score=102.71 Aligned_cols=116 Identities=14% Similarity=0.077 Sum_probs=74.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|..|||||||++.+........ ..|.......+.. .+..+.+|||||... +...
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~-----~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~ 77 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPL 77 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccc-----cCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 3447999999999999999999986543211 1222233333333 567899999999532 2233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~ 151 (230)
...++.++|++++|+|++++.+.. .....+.+.+... ...|+++|+||.|+..
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~--~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPN 132 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcCHhhCCCCEEEEEECCCCCC
Confidence 445678899999999998543222 2233344433211 2358999999999764
No 141
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.59 E-value=4.1e-15 Score=103.47 Aligned_cols=116 Identities=20% Similarity=0.179 Sum_probs=66.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccc--ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFK--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
+|+++|.+|+|||||+++|++..... ......+.+.......... ....+.++|++|......... .
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~-------~--- 69 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQ-------F--- 69 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSH-------H---
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceeccccc-------c---
Confidence 68999999999999999999877531 1111122222222222211 233588999999753221111 1
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGD 148 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D 148 (230)
....+|++++|+|.++.-+... ..++.++...-+.....|+++|.||.|
T Consensus 70 -~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 70 -FLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp -HHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred -hhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 1335689999999984432222 234444555433223469999999998
No 142
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.59 E-value=1.3e-13 Score=103.16 Aligned_cols=115 Identities=12% Similarity=0.073 Sum_probs=73.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+++|++|||||||++.+....... . ..|....+..+.. .+..+.+|||||... +....
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~--~---~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~ 78 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT--T---IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLW 78 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc--c---CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence 34799999999999999999996543311 1 1233333333333 567899999999632 22334
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~ 151 (230)
..++.++|++++|+|++++-+.. .....+.+.+... ...|+++|+||.|+..
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIG--DAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 45678899999999997432221 1223333333221 2358999999999754
No 143
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.59 E-value=1.2e-13 Score=107.21 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=59.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|.+|+|||||+|+|+|...... ....+|..+....+.+ .+..+.++||||+.+........... +...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~--~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~----~l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA--AYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQ----VIAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc--CCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHH----HHHh
Confidence 689999999999999999998764221 2234454444444443 67889999999987543222222222 2345
Q ss_pred cCCccEEEEEEeCCC
Q 026970 101 KDGIHAVLVVFSVRS 115 (230)
Q Consensus 101 ~~~~~~il~v~d~~~ 115 (230)
++.+|++++|+|+++
T Consensus 75 ~~~ad~il~V~D~t~ 89 (233)
T cd01896 75 ARTADLILMVLDATK 89 (233)
T ss_pred hccCCEEEEEecCCc
Confidence 677899999999863
No 144
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=4.5e-14 Score=102.51 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|..+|||||||+..+-..+.. ....|+...+ ..+.+. ...++++|||+|. ++|...
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~----~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ-----------ERFrsl 87 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDN----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-----------ERFRSL 87 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcc----cccceeeeEEEEEEEEEcCcEEEEEEEecccH-----------HHHhhh
Confidence 689999999999999999998665422 1222333222 222221 2347899999995 456677
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
+..+++++.++++|+|++++-+.+. .+|++.+.+.-|.. ...+++|.||.|+.++.
T Consensus 88 ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dkr 144 (221)
T KOG0094|consen 88 IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDKR 144 (221)
T ss_pred hhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccchh
Confidence 7888999999999999987777665 78888777765543 24688999999999744
No 145
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.58 E-value=2.1e-14 Score=108.09 Aligned_cols=114 Identities=19% Similarity=0.124 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
++|+++|.+|+|||||++.+++...... ...|....+. .+... ....+.+|||||...+. ...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-----------~l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQV----YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD-----------RLR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCc----cCCcceeeeEEEEEECCEEEEEEEEECCCChhcc-----------ccc
Confidence 4799999999999999999998754221 1112222221 12221 12478899999975422 122
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++..+|++++|++++++-+... ..++..+.... ...|+++|+||+|+..
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~ 118 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLRE 118 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence 245678899999999986544433 23566665532 2358999999999875
No 146
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.58 E-value=9.5e-14 Score=104.57 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=78.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|++|||||||++++.+..... ...|.......+.. .+..+.++||||... +...
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-----~~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~ 79 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-----HVPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRL 79 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-----cCCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 345899999999999999999999865411 11133223333443 567899999999542 1122
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCCC-ChhhHHHHhc
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELED-NDETLEDYLG 162 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~ 162 (230)
...++.++|++++|+|+++.-+.. .....+...+. .....|+++++||+|+... ....+.+++.
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~--~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~ 146 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQ--ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALG 146 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhC
Confidence 334567889999999997432211 12223333322 1234689999999998642 1334444443
No 147
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.58 E-value=4.9e-14 Score=123.93 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=82.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee---CCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
...++|+++|++++|||||+++|.+...... ..+++|.....+.+.+. .+..+.||||||+.. +
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F 308 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------F 308 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------H
Confidence 4558999999999999999999987765322 23445555444433332 347899999999642 2
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.......+..+|++++|+|++++........+..+... ..|+++++||+|+..
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~-----~iPiIVViNKiDl~~ 361 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA-----NVPIIVAINKIDKAN 361 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc-----CceEEEEEECCCccc
Confidence 23333455678999999999877766666666554331 348999999999875
No 148
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.58 E-value=2.4e-14 Score=105.33 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=69.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
+|+++|++|+|||||+++++.... .+... +.+.......... ++. .+.+|||||...... ....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~-~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~----------~~~~ 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYD-PNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT----------EQLE 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccC-CChHHhceEEEEE-CCEEEEEEEEECCCCccccc----------chHH
Confidence 489999999999999999986543 11111 1111111112222 333 578999999763110 1112
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|++++-+... ..++..+.+........|+++|+||+|+..
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 33456799999999985533332 344555555321122458999999999754
No 149
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.58 E-value=4.1e-14 Score=106.28 Aligned_cols=114 Identities=13% Similarity=0.044 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
++|+++|.+|+|||||++++++...... ...|....+. .+... ....+.+|||||... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~----~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE----YVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCC----CCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence 4799999999999999999998764211 1122222222 22221 123688999999542 1122
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+.++|++++|+|++++.+.... .++..+... . ...|+++|+||+|+..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~--~~~piilv~nK~Dl~~ 119 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-C--PGTPIMLVGLKTDLRK 119 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-C--CCCCEEEEEeChhhhh
Confidence 33456789999999999855443332 244444332 2 2358999999999864
No 150
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.58 E-value=7e-14 Score=103.96 Aligned_cols=113 Identities=20% Similarity=0.122 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|.+|+|||||++.+....... ....|....+. .+.. ++ ..+.+|||||...+. ..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~----~~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPS----EYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYD-----------RL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----CCCCceeeeeEEEEEE-CCEEEEEEEEECCCccchh-----------hh
Confidence 589999999999999999999765411 11223322222 2222 33 467899999975432 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+.++|++++|+|++++-+.... .++..+....+ ..|+++|+||+|+..
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~---~~piilvgnK~Dl~~ 119 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP---KTPFLLVGTQIDLRD 119 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence 23466788999999999865444432 35555555322 358999999999754
No 151
>COG2262 HflX GTPases [General function prediction only]
Probab=99.58 E-value=7.4e-14 Score=112.70 Aligned_cols=129 Identities=24% Similarity=0.193 Sum_probs=90.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...-+.|+++|.|++|||||+|+|++...+.. .....|.++....+.+.++..+.+-||-||.+. -..++...|..
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~--d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~--LP~~LV~AFks 264 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVA--DQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD--LPHPLVEAFKS 264 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeecc--ccccccccCceeEEEeCCCceEEEecCccCccc--CChHHHHHHHH
Confidence 45668999999999999999999998876432 344557777666677767899999999999862 23344444444
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+... ..+|++++|+|++++.-.... ...+.|.+. +.. ..|+++|+||+|++.
T Consensus 265 TLEE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~-~~p~i~v~NKiD~~~ 318 (411)
T COG2262 265 TLEEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEI-GAD-EIPIILVLNKIDLLE 318 (411)
T ss_pred HHHHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCC-CCCEEEEEecccccC
Confidence 44433 478999999999866333332 333334443 322 269999999999986
No 152
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3.4e-14 Score=113.88 Aligned_cols=129 Identities=22% Similarity=0.277 Sum_probs=84.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccc-----cCCCCccceeeeeEEEEe-eCC--eEEEEEeCCCCCCCCCCcH-
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGSE- 87 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~-----~~~~~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~~- 87 (230)
+-.++++++|++|.|||||||+|++...... ......-|.......... .+| .+++|+|||||+|.-....
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 4458999999999999999999998854321 111111133333332222 233 3788999999998543211
Q ss_pred ------HHHHHHHHHHHh-------hc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 88 ------FVGKEIVKCIGM-------AK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 88 ------~~~~~~~~~~~~-------~~--~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+..++..++.. .. .++|++||++.++ .++.+.|...++.+...+ ++|.|+.|+|.+.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v------NiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV------NLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc------cccceeeccccCC
Confidence 122222222211 11 3789999999875 458988988888887764 7999999999987
No 153
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.58 E-value=2.8e-14 Score=100.30 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=82.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.++|++||.+|+|||||+-++....+-+..+.. +..+.....+.. .+..++.+|||+|.. +++...
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~t--IGvDFkvk~m~vdg~~~KlaiWDTAGqE-----------rFRtLT 77 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTT--IGVDFKVKVMQVDGKRLKLAIWDTAGQE-----------RFRTLT 77 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCce--eeeeEEEEEEEEcCceEEEEEEeccchH-----------hhhccC
Confidence 489999999999999999999866542222211 222222222222 133578999999954 455666
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHH
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED 159 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~ 159 (230)
..+|+++.++|+|+|++.|-+... ..|++.+..+. .+...-.++|.||+|+-.+...+-++
T Consensus 78 pSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ys-tn~diikmlVgNKiDkes~R~V~reE 139 (209)
T KOG0080|consen 78 PSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYS-TNPDIIKMLVGNKIDKESERVVDREE 139 (209)
T ss_pred HhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhc-CCccHhHhhhcccccchhcccccHHH
Confidence 688999999999999986655443 45555555543 33334567999999976433333333
No 154
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=5.6e-14 Score=108.50 Aligned_cols=116 Identities=14% Similarity=0.029 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|||||||++.+++..+... ...|....+. .+.. .....+.||||||... +..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~----y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~-----------~~~ 76 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPET----YVPTVFENYTAGLETEEQRVELSLWDTSGSPY-----------YDN 76 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCC----cCCceeeeeEEEEEECCEEEEEEEEeCCCchh-----------hHH
Confidence 347999999999999999999987654211 1112222221 1222 1234788999999532 223
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....++.++|++++|+|++++-+... ..|+..+.+... ..|+++|+||+|+..
T Consensus 77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~ 131 (232)
T cd04174 77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence 33456789999999999986655443 456666666432 348999999999753
No 155
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.58 E-value=6.2e-14 Score=106.70 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCccceeeeeEEEEee--------------------------------
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLK-------------------------------- 66 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~-------------------------------- 66 (230)
.+|+++|++|+|||||+.+|++... ........+.+....+....+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3789999999999999999987632 1111112233333332222211
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 145 (230)
....+.||||||.. .+...+......+|++++|+|+++. ........+..+.. .+ ..|+++|+|
T Consensus 81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIVQN 145 (203)
T ss_pred cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEEEE
Confidence 12678999999952 2334444455678999999999853 33334444444433 22 246899999
Q ss_pred CCCCCC
Q 026970 146 GGDELE 151 (230)
Q Consensus 146 k~D~~~ 151 (230)
|+|+..
T Consensus 146 K~Dl~~ 151 (203)
T cd01888 146 KIDLVK 151 (203)
T ss_pred chhccC
Confidence 999875
No 156
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.57 E-value=1.1e-13 Score=105.24 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
++|+++|++|+|||||++.|.+........ ++ ......... ..+..+.+|||||.... ...
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~---s~--~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-----------~~~ 64 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVT---SI--EPNVATFILNSEGKGKKFRLVDVPGHPKL-----------RDK 64 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccC---cE--eecceEEEeecCCCCceEEEEECCCCHHH-----------HHH
Confidence 478999999999999999999875422211 11 111111211 13567999999997531 222
Q ss_pred HHhhcCCc-cEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGI-HAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~-~~il~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivv~tk~D~~~ 151 (230)
+...+..+ ++++||+|+.+.. .......+++...+. .....|+++++||+|+..
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred HHHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 23344555 9999999997432 222233333332221 112458999999999875
No 157
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.57 E-value=3.5e-14 Score=119.66 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=82.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCccceeeeeEEEEee
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLK 66 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~ 66 (230)
..+..+|+++|+.++|||||++.|++...... .....++|.......+..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 34558999999999999999999985432110 011457777777776665
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivv~ 144 (230)
++..+.||||||+.++. ..+......+|++++|+|+++ .+...+...+..+.. ++. +++++++
T Consensus 82 ~~~~i~liDtpG~~~~~-----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivvi 146 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFV-----------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAI 146 (425)
T ss_pred CCeEEEEEECCCcccch-----------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEE
Confidence 67899999999975422 112223457899999999986 555555555544433 342 3699999
Q ss_pred eCCCCCC
Q 026970 145 TGGDELE 151 (230)
Q Consensus 145 tk~D~~~ 151 (230)
||+|+..
T Consensus 147 NK~Dl~~ 153 (425)
T PRK12317 147 NKMDAVN 153 (425)
T ss_pred Ecccccc
Confidence 9999874
No 158
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.57 E-value=1.2e-13 Score=101.91 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=72.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|++|+|||||++.+++...... .....+.......+.. .+ ..+.++||||... +...
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~ 72 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRSI 72 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHH
Confidence 37999999999999999999986543211 1111222222222222 33 4578899999642 1223
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...++..+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+..
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~~i~v~NK~D~~~ 126 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANN--KVITILVGNKIDLAE 126 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 3345678899999999874432221 3444445544322 347899999999864
No 159
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.57 E-value=3.9e-14 Score=105.08 Aligned_cols=111 Identities=23% Similarity=0.165 Sum_probs=71.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
|+++|.+|+|||||++++++...... . . .|....+. .+.. ++ ..+.+|||||..... ....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~-~-~--~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPED-Y-V--PTVFENYSADVEV-DGKPVELGLWDTAGQEDYD-----------RLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCC-C-C--CcEEeeeeEEEEE-CCEEEEEEEEECCCCcccc-----------hhch
Confidence 58999999999999999998764221 1 1 12222222 2222 33 358899999975432 2222
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+.++|++++|+|+++.-+... ..++..+.... ...|+++|+||+|+..
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 116 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLRE 116 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhh
Confidence 45678899999999985433332 23555555532 2458999999999865
No 160
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.3e-14 Score=103.86 Aligned_cols=122 Identities=21% Similarity=0.210 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+|+|.+|||||||+-++....+.....+..+.........+. .....+.+|||.|...+. ...
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-~~~ikfeIWDTAGQERy~-----------sla 71 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-DNTIKFEIWDTAGQERYH-----------SLA 71 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-CcEEEEEEEEcCCccccc-----------ccc
Confidence 34799999999999999998887665432222222222212222111 123578899999976432 445
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
..++++++++|+|+|+++.-+... +.|++.|++..+++ ..+.+|+||+|+....
T Consensus 72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R 126 (200)
T KOG0092|consen 72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERR 126 (200)
T ss_pred cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcc
Confidence 588999999999999985433333 67777777765432 3566799999998643
No 161
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.57 E-value=6.5e-14 Score=105.75 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=71.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE--EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
.+|+++|.+|+|||||++++++...... . ...|....+. .+.. ++ ..+.+|||||..... .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~-~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~-----------~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVG-P--YQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYE-----------A 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCc-C--cccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhh-----------h
Confidence 3799999999999999999997654211 1 1112222221 2222 33 356799999964321 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+.++|++++|+|+++.-+... ..+++.+... . ...|+++|+||+|+..
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~--~~~piilv~nK~Dl~~ 119 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-E--EHCKIYLCGTKSDLIE 119 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-C--CCCCEEEEEEcccccc
Confidence 22345668899999999975433222 3445554442 1 2358999999999764
No 162
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.57 E-value=5.5e-14 Score=108.35 Aligned_cols=118 Identities=20% Similarity=0.129 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.+|+++|.+|+|||||++.+++.........+.. ........+.. .....+.+|||||... . +. .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~-~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~----~~---~ 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASG-DDDTYERTVSVDGEESTLVVIDHWEQEM------W----TE---D 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCc-cccceEEEEEECCEEEEEEEEeCCCcch------H----HH---h
Confidence 3799999999999999999976554211111111 00111111221 1335788999999751 1 11 1
Q ss_pred hhcC-CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 99 MAKD-GIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 99 ~~~~-~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
.++. ++|++++|+|++++-+... ..++..+.+. ......|+++|+||+|+...
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLARS 121 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhcccc
Confidence 2334 7899999999985533332 3445555443 22234689999999998653
No 163
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.3e-13 Score=98.12 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=88.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+++++|.+|||||.|+..++...+.+......++........+. ....++++|||.|.. .+.....
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id-~k~IKlqiwDtaGqe-----------~frsv~~ 73 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID-GKQIKLQIWDTAGQE-----------SFRSVTR 73 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-CceEEEEEEecCCcH-----------HHHHHHH
Confidence 4789999999999999999999877644333222222222222222 134589999999964 4456667
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCC---hhhHHHHhcc
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGR 163 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~ 163 (230)
.+|+++-++|+|+|++.+-+... ..|+..++.....+ -.++++.||+|+.... .+.-++|.++
T Consensus 74 syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs~EEGeaFA~e 140 (216)
T KOG0098|consen 74 SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVSKEEGEAFARE 140 (216)
T ss_pred HHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccccccHHHHHHHHHH
Confidence 88899999999999986655544 56777777764333 3688999999987533 2334445543
No 164
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.57 E-value=9e-14 Score=102.65 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|.+|+|||||++++++...... . . .|....+ ..+... ....+.+|||||...+. ...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~-~-~--~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIES-Y-D--PTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT-----------AMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-c-C--CcchheEEEEEEECCEEEEEEEEeCCCcccch-----------hhh
Confidence 5899999999999999999987654221 1 1 1211111 112221 22477899999976532 222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..++++++|++.+++-+... ..+...+.+... ....|+++++||.|...
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLED 120 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccc
Confidence 344567789999999975433222 344444544332 22458999999999865
No 165
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.57 E-value=3.8e-14 Score=112.44 Aligned_cols=115 Identities=25% Similarity=0.312 Sum_probs=75.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccccc---CC-------------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSR---AS-------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~---~~-------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (230)
+|+++|++|+|||||+|+|++....... .. ..+.+.......+.+ ++..+.+|||||..++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence 5899999999999999999764321100 00 112233333344444 6788999999997532
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
.......+..+|++++|+|++..........++.+... + .|.++++||+|....
T Consensus 78 ---------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-~----~p~iivvNK~D~~~~ 131 (268)
T cd04170 78 ---------VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA-G----IPRIIFINKMDRERA 131 (268)
T ss_pred ---------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCccCCC
Confidence 12222344567999999999877666656666554432 2 478999999998764
No 166
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.57 E-value=6.7e-14 Score=103.99 Aligned_cols=113 Identities=20% Similarity=0.152 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|.+|+|||||+.+++....... ...|....+. .+.. ++ ..+.+|||+|...+. ..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~----~~~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~~~-----------~~ 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTD----YIPTVFDNFSANVSV-DGNTVNLGLWDTAGQEDYN-----------RL 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC----CCCcceeeeEEEEEE-CCEEEEEEEEECCCCcccc-----------cc
Confidence 4799999999999999999997654211 1112222221 1222 33 478899999976543 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+.++|++++|+|.+++-+... ..|+..+.+.. . ..|+++|+||+|+.+
T Consensus 66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~ 119 (176)
T cd04133 66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-P--NVPIVLVGTKLDLRD 119 (176)
T ss_pred chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEeChhhcc
Confidence 2346788999999999987666554 35666665542 2 358999999999854
No 167
>PLN03108 Rab family protein; Provisional
Probab=99.56 E-value=1.5e-13 Score=105.23 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=72.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|++|+|||||++.+++....... ...+........+.. ++ ..+.+|||||... +...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~--~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~~ 71 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRSI 71 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 379999999999999999999977542221 111111111112222 23 3678999999532 1122
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|+++.-+... ..++..+..... ...|+++|+||+|+..
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence 3345567899999999985433222 244444444322 2358999999999864
No 168
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.56 E-value=1.1e-13 Score=101.47 Aligned_cols=117 Identities=19% Similarity=0.165 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.+|+++|.+|+|||||+++++....... ..+.+........... ....+.++||||..... ....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA-----------AIRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccc---cCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-----------HHHH
Confidence 3799999999999999999997654211 1111111111111211 23468899999965321 2233
Q ss_pred hhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..++++++|++..+.-+.. ...++..+..... ....|+++|+||+|+..
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 4556778999999987432211 1344444444311 23468999999999875
No 169
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.56 E-value=3.8e-13 Score=103.91 Aligned_cols=140 Identities=17% Similarity=0.198 Sum_probs=84.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCC--C-------------------------------------------
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS--S------------------------------------------- 52 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~--~------------------------------------------- 52 (230)
..+.|+++|++|+||||++++|+|...+..+... .
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3368999999999999999999997532211100 0
Q ss_pred ----ccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCC-ccEEEEEEeCCCCCCHHH-HHH
Q 026970 53 ----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDG-IHAVLVVFSVRSRFSQEE-EAA 124 (230)
Q Consensus 53 ----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~il~v~d~~~~~~~~~-~~~ 124 (230)
+++...-...+..++...++|+||||+...... .......+.+.+..+... .+.+|+|+++...+...+ ..+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 000000011111123357999999999753211 133445555655555553 358889999876666555 455
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcc
Q 026970 125 LHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 163 (230)
Q Consensus 125 l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~ 163 (230)
.+.+... ..++++|+||.|...+ +....+.+.+
T Consensus 185 a~~ld~~-----~~rti~ViTK~D~~~~-~~~~~~~~~~ 217 (240)
T smart00053 185 AKEVDPQ-----GERTIGVITKLDLMDE-GTDARDILEN 217 (240)
T ss_pred HHHHHHc-----CCcEEEEEECCCCCCc-cHHHHHHHhC
Confidence 5555442 3489999999999864 3336666653
No 170
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.56 E-value=5.2e-14 Score=109.67 Aligned_cols=126 Identities=19% Similarity=0.152 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
..|+++|-|++|||||+|+|..... .......+|..+.+..+.+.+...+++-|.||+......+..+...|.+.+..
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 3578999999999999999998875 22345567777888777765666799999999998777777788888887776
Q ss_pred hcCCccEEEEEEeCCCCC--CH-HHHHHH-HHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRF--SQ-EEEAAL-HSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~--~~-~~~~~l-~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+ +.++||+|..... ++ ...+.+ ..+..+-.....+|.++|.||+|..+
T Consensus 275 ~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e 326 (366)
T KOG1489|consen 275 C----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE 326 (366)
T ss_pred h----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh
Confidence 6 6999999997441 22 222222 22222212224568999999999864
No 171
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.56 E-value=8.5e-14 Score=103.42 Aligned_cols=113 Identities=20% Similarity=0.106 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|.+|+|||||+.+++....... . ..|....+. .+.. ++ ..+.+|||||..... ..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~---~-~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~ 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGE---Y-IPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD-----------RL 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCc---C-CCcceeeeEEEEEE-CCEEEEEEEEECCCchhhh-----------hh
Confidence 5899999999999999999987653211 1 112221111 1222 33 468899999964321 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+.++|++++|+|++++-+... ..++..+.... ...|+++|+||+|+..
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~ 119 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhcc
Confidence 2345678999999999985544333 23555555432 2358999999999854
No 172
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.56 E-value=1.8e-13 Score=101.19 Aligned_cols=118 Identities=14% Similarity=0.013 Sum_probs=71.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
+..+|+++|.+|+|||||++++++..... ....+..........+.. ++ ..+.++||+|...+..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~-~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~----------- 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSL-NAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAIL----------- 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCc-ccCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccc-----------
Confidence 35799999999999999999999876420 111111111111122222 33 4678899999654321
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++-+ ......++.. +......|+++|+||+|+.+
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s--~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKS--FSYCAEVYKK-YFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHH--HHHHHHHHHH-hccCCCCeEEEEEEcccccc
Confidence 11234578899999999975422 1222233322 22222468999999999864
No 173
>PRK12735 elongation factor Tu; Reviewed
Probab=99.55 E-value=1.3e-13 Score=114.91 Aligned_cols=119 Identities=16% Similarity=0.206 Sum_probs=80.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcc------c--------cccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRA------F--------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~------~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (230)
.+..+|+++|+.++|||||+++|++... + .......++|.......+.. ++..+.|+||||+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~-- 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA-- 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH--
Confidence 4458999999999999999999986211 0 01112456666665544443 56789999999963
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+...+......+|++++|+|+.+.....+...+..+.. .+. +.+++++||+|+..
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi---~~iivvvNK~Dl~~ 142 (396)
T PRK12735 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV---PYIVVFLNKCDMVD 142 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC---CeEEEEEEecCCcc
Confidence 233333445567899999999986676666666655543 232 23556899999874
No 174
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.55 E-value=8.9e-14 Score=105.47 Aligned_cols=115 Identities=22% Similarity=0.262 Sum_probs=72.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
+|+++|.+|+|||||++++++...... ....+.......+.. .+ ..+.++||||...+. ....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~-----------~~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK---YRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSFP-----------AMRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc---CCCchhhheeEEEEE-CCEEEEEEEEECCCchhhh-----------HHHH
Confidence 589999999999999999998764211 111111111122222 33 478899999975421 1222
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|+++..+... ..++..+.+... ....|+++|+||+|...
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE 118 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence 45678899999999975433332 333444444322 23468999999999865
No 175
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.55 E-value=4.5e-14 Score=103.22 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
.+|+++|++|+|||||+|+|.|.... . ..|... .+ ... .+|||||..... .... ..+..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~----~--~~~~~v-----~~-~~~--~~iDtpG~~~~~---~~~~----~~~~~ 60 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTL----A--RKTQAV-----EF-NDK--GDIDTPGEYFSH---PRWY----HALIT 60 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcc----C--ccceEE-----EE-CCC--CcccCCccccCC---HHHH----HHHHH
Confidence 37999999999999999999976421 0 112211 11 111 269999986432 1122 22223
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~ 162 (230)
.+.++|++++|+|+++..+.... ++... +. ..|+++++||+|+...+...+.+++.
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~~~~~~~~~~~ 116 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMPDADVAATRKLLL 116 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccCcccHHHHHHHHH
Confidence 45688999999999754332222 22222 11 24799999999985433333344443
No 176
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.55 E-value=1.9e-13 Score=102.66 Aligned_cols=126 Identities=22% Similarity=0.302 Sum_probs=83.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccC---CCCcc--ceeeeeEE-EEeeCC--eEEEEEeCCCCCCCCCCcHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA---SSSGV--TSTCEMQR-TVLKDG--QVVNVIDTPGLFDFSAGSEFVG 90 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~---~~~~~--t~~~~~~~-~~~~~~--~~~~liDtPG~~~~~~~~~~~~ 90 (230)
.++|+++|.+|.||||++|.|+......+.. +..++ |....... ....++ -+++++|||||+|.- .++.-+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqI-nN~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQI-NNDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccccc-Cccchh
Confidence 4799999999999999999998766543221 11122 22222221 111233 368899999999853 333344
Q ss_pred HHHHHHHHhhc------------------CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 91 KEIVKCIGMAK------------------DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 91 ~~~~~~~~~~~------------------~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+-+.+++...+ .++|+++|++.++ ..+.+.|...++.|.+.. +++.|+.|+|.+.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeeccccc
Confidence 44444433221 3579999999885 457777888888887764 6999999999886
No 177
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.55 E-value=1.4e-13 Score=122.47 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=81.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~ 96 (230)
..+|+++|++|+|||||+|+|+|...... ...++|.+.....+.. ++..+.++||||.++...... ...+.+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg--n~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 36899999999999999999999865322 2356677666655554 677899999999987543211 112222221
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+|++++|+|+++ .... ..+...+.+. ..|+++++||+|..+
T Consensus 80 -~l~~~~aD~vI~VvDat~-ler~-l~l~~ql~e~-----giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 80 -YILSGDADLLINVVDASN-LERN-LYLTLQLLEL-----GIPCIVALNMLDIAE 126 (772)
T ss_pred -HHhccCCCEEEEEecCCc-chhh-HHHHHHHHHc-----CCCEEEEEEchhhhh
Confidence 112357899999999984 3322 2333444442 258999999999874
No 178
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.55 E-value=9e-14 Score=104.84 Aligned_cols=114 Identities=19% Similarity=0.095 Sum_probs=73.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
..+|+++|.+|||||||+..+....+... ...|....+. .+.. ++ ..+.+|||||...+ ..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~-----------~~ 66 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKE----YIPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEEY-----------DR 66 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcC----CCCceEeeeEEEEEE-CCEEEEEEEEECCCchhh-----------hh
Confidence 37899999999999999999987654111 1223322222 1112 33 46889999996432 22
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....++.++|++++|+|++++-+.... .+...+.... ...|+++|+||.|+..
T Consensus 67 l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~ 121 (191)
T cd01875 67 LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRN 121 (191)
T ss_pred hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhc
Confidence 334567889999999999865444332 2444444432 2358999999999854
No 179
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.55 E-value=2.1e-13 Score=118.94 Aligned_cols=116 Identities=22% Similarity=0.312 Sum_probs=84.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
.|+++|+.++|||||+++|+|..... ......++|....+......++..+.||||||+. .+...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----------~fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----------KFLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----------HHHHHHHH
Confidence 68999999999999999999864211 1123357787776665554467789999999963 23333445
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...++|++++|+|+++.+...+...+..+.. ++. +++++|+||+|+.+
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv~ 118 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGN---PMLTVALTKADRVD 118 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCccCC
Confidence 5677899999999987777777777766544 342 35789999999875
No 180
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.55 E-value=8.6e-14 Score=101.54 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=71.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
+|+++|++|+|||||++++++... ... ..+.+.......... . ...+.++|+||... +.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEE--YDPTIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcC--cCCChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence 589999999999999999998763 111 111122222222222 3 34688999999643 112233
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|.++.-+... ..+...+..... ....|+++|+||+|...
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccc
Confidence 44567799999999874322222 344444444432 12458999999999875
No 181
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.55 E-value=3.8e-14 Score=101.67 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=65.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|++|+|||||+|++++... . ...|.. ..+ .. .+|||||... . .......+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~----~~~t~~-----~~~-~~---~~iDt~G~~~---~----~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--L----YKKTQA-----VEY-ND---GAIDTPGEYV---E----NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--c----ccccee-----EEE-cC---eeecCchhhh---h----hHHHHHHHHHH
Confidence 799999999999999999998753 1 111221 111 11 5899999631 0 11222222234
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
++++|++++|+|++++.+.....+.. .++ .|+++|+||+|+.+
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAE 102 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCC
Confidence 78899999999998665543333322 222 27999999999864
No 182
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.55 E-value=8.7e-14 Score=106.74 Aligned_cols=115 Identities=22% Similarity=0.315 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCccceeeeeEEEEee---------CCeEEEEEeC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------DGQVVNVIDT 76 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~~liDt 76 (230)
++|+++|+.++|||||+.+|+........ ....++|.........+. .+..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 47999999999999999999755321110 012234443332222221 1567899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
||+.++. ......+..+|++++|+|+.+.........+...... + .|+++|+||+|+.
T Consensus 81 PG~~~f~-----------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-~----~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFS-----------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-R----VKPVLVINKIDRL 138 (222)
T ss_pred CCccccH-----------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCcc
Confidence 9987632 2333455677999999999877777666666554432 2 3799999999986
No 183
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.55 E-value=2.5e-13 Score=94.26 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
...+++|.+|+|||+|+-.+....+ ++.....+..+..+..+... ....+++|||+|. +.++....
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq-----------ErFrtits 75 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ-----------ERFRTITS 75 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEeecCCcEEEEEEeecccH-----------HHHHHHHH
Confidence 4568999999999999988876543 22222222233333344432 2347899999994 55667778
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCC---hhhHHHHhcccCCchhhhhHH
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLGRECPKPLKKGAT 174 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~~~~~~~l~~~~~ 174 (230)
.+++++|++++|+|+++.-+... ..|++.+...+. ..|-++|.||.|..... .+....|...-.-+.+...++
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaK 152 (198)
T KOG0079|consen 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAK 152 (198)
T ss_pred HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc---cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhh
Confidence 89999999999999985544443 677777777654 34789999999987532 233444444333333334445
Q ss_pred HHHhHHHHH
Q 026970 175 KLRDQQFEV 183 (230)
Q Consensus 175 ~~~~~~~~~ 183 (230)
+.+..+.++
T Consensus 153 e~~NvE~mF 161 (198)
T KOG0079|consen 153 ENENVEAMF 161 (198)
T ss_pred hcccchHHH
Confidence 444444444
No 184
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=6.1e-14 Score=103.12 Aligned_cols=118 Identities=19% Similarity=0.120 Sum_probs=83.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE--EEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
...++|+++|.+|+|||-|+.+++...+.....+ |+...+. .+.. ..-.+.++|||.|... +
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~Sks----TIGvef~t~t~~vd~k~vkaqIWDTAGQER-----------y 76 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKS----TIGVEFATRTVNVDGKTVKAQIWDTAGQER-----------Y 76 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCccccc----ceeEEEEeeceeecCcEEEEeeecccchhh-----------h
Confidence 4458999999999999999999987765222222 3333322 2222 1224678999999643 3
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+.....+|+++.+.++|+|++.+.+.+. ..|++.|+..... ..++++|.||+|+..
T Consensus 77 rAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~--nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 77 RAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADS--NIVIMLVGNKSDLNH 133 (222)
T ss_pred ccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCC--CeEEEEeecchhhhh
Confidence 4556678999999999999986666554 6777777775433 458999999999875
No 185
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.54 E-value=6.4e-14 Score=103.42 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=68.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE----------------------------------------
Q 026970 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ---------------------------------------- 61 (230)
Q Consensus 22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~---------------------------------------- 61 (230)
|+++|..++|||||||+|+|....+.+.... |......
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~--T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPC--TAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDS 78 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSST--TSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccccc--ccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccc
Confidence 7899999999999999999988644332211 1110000
Q ss_pred ---------------EEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHH
Q 026970 62 ---------------RTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALH 126 (230)
Q Consensus 62 ---------------~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~ 126 (230)
.........+.|+||||+.+...... ..+..+.+.+|++|+|+++...++..+...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~ 151 (168)
T PF00350_consen 79 IEGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLK 151 (168)
T ss_dssp HHTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHH
T ss_pred ccccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHH
Confidence 01111223599999999976433333 33334446789999999998666655544444
Q ss_pred HHHHHhcccccceEEEEEeCC
Q 026970 127 SLQTLFGKKIFDYMIVVFTGG 147 (230)
Q Consensus 127 ~l~~~~~~~~~~~~ivv~tk~ 147 (230)
...... ...+++|+||+
T Consensus 152 ~~~~~~----~~~~i~V~nk~ 168 (168)
T PF00350_consen 152 QMLDPD----KSRTIFVLNKA 168 (168)
T ss_dssp HHHTTT----CSSEEEEEE-G
T ss_pred HHhcCC----CCeEEEEEcCC
Confidence 333322 23599999984
No 186
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.54 E-value=9.2e-14 Score=120.15 Aligned_cols=115 Identities=18% Similarity=0.226 Sum_probs=77.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-----------------CeEEEEEeCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-----------------GQVVNVIDTPGLFD 81 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~liDtPG~~~ 81 (230)
.+.|+++|++++|||||+|+|++..... ...+++|.+.....+.... ...+.||||||+..
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~--~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK--REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccc--ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 4689999999999999999999886522 1223344432222221100 02488999999753
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+ .......+..+|++++|+|+++.....+...+..+... ..|+++++||+|+..
T Consensus 82 f-----------~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 F-----------TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----KTPFVVAANKIDRIP 135 (590)
T ss_pred H-----------HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 2 12233455688999999999877777776666655442 247999999999864
No 187
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.54 E-value=1.7e-13 Score=105.24 Aligned_cols=114 Identities=18% Similarity=0.057 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|.+|+|||||++.+++..+... .. .|....+. .+.. .....+.+|||+|... +....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~--y~--pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~-----------~~~l~ 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGS--YV--PTVFENYTASFEIDKRRIELNMWDTSGSSY-----------YDNVR 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCc--cC--CccccceEEEEEECCEEEEEEEEeCCCcHH-----------HHHHh
Confidence 5899999999999999999997654211 11 12222221 2222 1234688899999642 22333
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+++++|++++|+|++++-+... ..|...+.... ...|+++|+||+|+..
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~ 119 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRT 119 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECccccc
Confidence 456789999999999985533332 23333333322 2358999999999864
No 188
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.54 E-value=9.3e-14 Score=103.68 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.+|+++|.+|+|||||++.+++....... .+.+........... ....+.++||||..++. ....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY---YPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYS-----------ILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc---CcchhhhEEEEEEECCEEEEEEEEECCChHhhH-----------HHHH
Confidence 68999999999999999999977542111 111111111112221 12457899999965321 2222
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|.++..+... ..+...+.+..+. ...|+++|+||+|...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHT 120 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhh
Confidence 44557799999999985433222 3333444443321 2358999999999864
No 189
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.54 E-value=3.3e-13 Score=117.26 Aligned_cols=115 Identities=22% Similarity=0.275 Sum_probs=82.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
+|+++|+.++|||||+++|+|..... ......++|....+..+.. .+..+.+|||||+. .+...+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe-----------~f~~~~~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHE-----------KFISNAIA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHH-----------HHHHHHHh
Confidence 68999999999999999999854211 1122456677776666655 55889999999953 23344445
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+.++|++++|+|+++.....+...+..+.. .+. +++++|+||+|+.+
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVN 117 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCC
Confidence 5678899999999987666666666655443 342 24999999999875
No 190
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.53 E-value=1.3e-13 Score=103.17 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=72.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
.+|+++|.+|+|||||++++++..... . ...|....+ ..+.. ++ ..+.+|||+|...+ ..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~--~--~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~-----------~~ 64 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE--D--YIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREF-----------IN 64 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--C--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhH-----------HH
Confidence 378999999999999999998765421 1 112322222 12222 33 46889999996432 23
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+++++|++++|+|++++.+... ..++..+.+... . ..| ++|+||+|+..
T Consensus 65 ~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~-~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 65 MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK-T-AIP-ILVGTKYDLFA 118 (182)
T ss_pred hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C-CCE-EEEEEchhccc
Confidence 34456788999999999986544433 345555555322 1 234 68899999863
No 191
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.53 E-value=1.7e-13 Score=107.07 Aligned_cols=116 Identities=19% Similarity=0.184 Sum_probs=71.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
+|+++|.+|+|||||++.+++..... . ..+++.......+.. ++ ..+.||||||...+. ....
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~-~--y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~-----------~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE-Q--YTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPFP-----------AMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC-C--CCCChhHhEEEEEEE-CCEEEEEEEEECCCChhhh-----------HHHH
Confidence 79999999999999999998765421 1 111111111112222 33 467899999965321 1122
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-------ccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-------KKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~-------~~~~~~~ivv~tk~D~~~ 151 (230)
.++..+|++++|+|++++-+... ..+++.+.+... .....|+++|+||+|+..
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 34567899999999985533332 344444543210 113458999999999864
No 192
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.53 E-value=3.4e-13 Score=97.71 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|.+|+|||||+|.|++... ... ...+.+.......+.. ++ ..+.+|||||..+.. ...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITE-YKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR-----------AIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-cCc-CCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccch-----------HHH
Confidence 6899999999999999999998873 222 2233344433333333 45 678899999965422 111
Q ss_pred HhhcCCccEEEEEEeCCCC-CCHH--HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSR-FSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~-~~~~--~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......++.+++++|.... .+.. ...+...+...... ..|+++++||+|+..
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRD 122 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCc
Confidence 1223344567777766423 1111 12334444443321 458999999999875
No 193
>PLN03127 Elongation factor Tu; Provisional
Probab=99.53 E-value=1.7e-13 Score=115.44 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=82.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCcc------c------c--ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRA------F------K--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~------~------~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (230)
..+..+|+++|+.++|||||+++|++... . + ......++|.......+.. ++..+.|+||||+.+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHAD 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccc
Confidence 34568999999999999999999974310 0 0 0112356777766655554 567899999999853
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+...+......+|++++|+|+.+.....+...+..+... +. +.+++++||+|+.+
T Consensus 137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gi---p~iIvviNKiDlv~ 191 (447)
T PLN03127 137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GV---PSLVVFLNKVDVVD 191 (447)
T ss_pred -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC---CeEEEEEEeeccCC
Confidence 112222233468999999999877777777777766653 42 23678999999875
No 194
>PLN00023 GTP-binding protein; Provisional
Probab=99.53 E-value=2.2e-13 Score=108.56 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=78.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEee--------------CCeEEEEEeCCC
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK--------------DGQVVNVIDTPG 78 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~--------------~~~~~~liDtPG 78 (230)
+.....+|+++|..|||||||++.+++...... ...|....+ ..+.+. ....+.||||+|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~----~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG 92 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIAR----PPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG 92 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccc----cCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC
Confidence 344558999999999999999999997654211 111222211 112211 124688999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc----------cccceEEEEEeCC
Q 026970 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK----------KIFDYMIVVFTGG 147 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~----------~~~~~~ivv~tk~ 147 (230)
... +..+...++.+++++|+|+|++++-+... ..|++.+...... ....+++||.||+
T Consensus 93 qEr-----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~ 161 (334)
T PLN00023 93 HER-----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA 161 (334)
T ss_pred Chh-----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence 643 22444566889999999999986544433 4566666654210 0135899999999
Q ss_pred CCCC
Q 026970 148 DELE 151 (230)
Q Consensus 148 D~~~ 151 (230)
|+..
T Consensus 162 DL~~ 165 (334)
T PLN00023 162 DIAP 165 (334)
T ss_pred cccc
Confidence 9864
No 195
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.53 E-value=2.3e-13 Score=100.91 Aligned_cols=113 Identities=19% Similarity=0.099 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|++|+|||||++++++....... ..|....+ ..+.. ++ ..+.+|||||...+.. .
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 64 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------L 64 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeEEEEEE-CCEEEEEEEEeCCCcccccc-----------c
Confidence 37999999999999999999977642111 11221111 12222 33 3577999999765332 1
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|++.+++-+... ..++..+... ....|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRD 118 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhc
Confidence 1235678899999999975533332 2345555443 22458999999999764
No 196
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.53 E-value=2.4e-13 Score=120.78 Aligned_cols=121 Identities=20% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (230)
...-++|+++|+.++|||||+|+|++....... ....++|.......+.+ ++..+.++||||+
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~ 85 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGH 85 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCC
Confidence 344589999999999999999999753321100 01246677766666665 7789999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
.++.. .....+..+|++++|+|+.+.....+...+..+.+. + .|+++++||+|+...+
T Consensus 86 ~~~~~-----------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 86 VDFTV-----------EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-E----VPRIAFVNKMDKTGAN 143 (689)
T ss_pred cchhH-----------HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-C----CCEEEEEECCCCCCCC
Confidence 76321 122344566999999999877777776666665443 2 4789999999988543
No 197
>PRK00049 elongation factor Tu; Reviewed
Probab=99.53 E-value=2.1e-13 Score=113.68 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=82.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccc--------------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (230)
.+..+|+++|+.++|||||+++|++..... ......+.|.......+.. ++..+.++||||+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~-- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA-- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH--
Confidence 345899999999999999999998732100 0111456666665554443 56789999999963
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceE-EEEEeCCCCCC
Q 026970 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM-IVVFTGGDELE 151 (230)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~-ivv~tk~D~~~ 151 (230)
.+...+......+|++++|+|+.......+...+..+... + .|. ++++||+|+..
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVD 142 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-C----CCEEEEEEeecCCcc
Confidence 2334444455788999999999877777777777766653 4 244 56899999874
No 198
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.53 E-value=1.7e-13 Score=118.87 Aligned_cols=115 Identities=21% Similarity=0.326 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc-ccc-------------cCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRA-FKS-------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~-~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~ 85 (230)
++|+++|+.++|||||+++|+.... +.. .....++|.......+.+ ++..+.+|||||+.++.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~-- 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFG-- 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHH--
Confidence 6899999999999999999985421 100 011346677776666665 78899999999986532
Q ss_pred cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+...+..+|++++|+|+.+........++..+... + .|+++|+||+|+..
T Consensus 79 ---------~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~----ip~IVviNKiD~~~ 130 (594)
T TIGR01394 79 ---------GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-G----LKPIVVINKIDRPS 130 (594)
T ss_pred ---------HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-C----CCEEEEEECCCCCC
Confidence 2233445567999999999867766666666666552 2 36899999999864
No 199
>PRK12736 elongation factor Tu; Reviewed
Probab=99.53 E-value=3.1e-13 Score=112.67 Aligned_cols=119 Identities=14% Similarity=0.208 Sum_probs=82.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccc--------------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (230)
.+..+|+++|+.++|||||+++|++..... ......+.|.......+.. ++..+.++||||+.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~-- 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHA-- 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHH--
Confidence 445899999999999999999998742100 0111456676665444443 56789999999963
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
++...+......+|++++|+|+.......+...+..+... +. +++++++||+|+..
T Consensus 87 ---------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~---~~~IvviNK~D~~~ 142 (394)
T PRK12736 87 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV---PYLVVFLNKVDLVD 142 (394)
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC---CEEEEEEEecCCcc
Confidence 2222333344577999999999877777777777766553 42 24788999999874
No 200
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.52 E-value=1.3e-13 Score=105.83 Aligned_cols=115 Identities=20% Similarity=0.248 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccc-----------------CCCCccceeeeeEEEEee----CCeEEEEEeCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-----------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPG 78 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG 78 (230)
++|+++|+.|+|||||+++|++....... ....+++.......+.+. ....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 46899999999999999999865432110 011223332222222221 236789999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
..++. ......+..+|++++|+|+.+........++..+... ..|+++|+||+|+.
T Consensus 81 ~~~f~-----------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFM-----------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE-----GLPIVLVINKIDRL 136 (213)
T ss_pred CcchH-----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccC
Confidence 87532 2223344577999999999866665554444443321 24899999999986
No 201
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.52 E-value=7.3e-14 Score=98.48 Aligned_cols=114 Identities=23% Similarity=0.288 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
++|+|+|++|+|||||+++|.+... ...-|....+. + .+|||||-+-. ...+.+.+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i~~~-----~----~~IDTPGEyiE-------~~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAIEYY-----D----NTIDTPGEYIE-------NPRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC------CcCccceeEec-----c----cEEECChhhee-------CHHHHHHHHH
Confidence 5899999999999999999998753 11113333222 2 36999996521 2345555555
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC--CCChhhHHHHhcc
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL--EDNDETLEDYLGR 163 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~--~~~~~~~~~~l~~ 163 (230)
....+|+|++|.|++++...-...+. ..| .+|+|-|+||+|+. ..+-+...++|+.
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa----~~f----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~ 117 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFA----SMF----NKPVIGVITKIDLPSDDANIERAKKWLKN 117 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhh----ccc----CCCEEEEEECccCccchhhHHHHHHHHHH
Confidence 56688999999999855432222222 222 35899999999998 3223344445553
No 202
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.52 E-value=2.3e-13 Score=100.99 Aligned_cols=114 Identities=18% Similarity=0.106 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|++|||||||++++++...... ...|....+ ..+... ....+.+|||||..... ...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV----YVPTVFENYVADIEVDGKQVELALWDTAGQEDYD-----------RLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC----CCCccccceEEEEEECCEEEEEEEEeCCCchhhh-----------hcc
Confidence 5899999999999999999998654211 111222111 122221 12367899999975321 111
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+.++|++++|++++++-+... ..++..+.... ...|+++|+||+|+..
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 119 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRN 119 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhccc
Confidence 234578899999999985433222 23444444432 2358999999999764
No 203
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.52 E-value=2.5e-13 Score=107.04 Aligned_cols=124 Identities=21% Similarity=0.185 Sum_probs=92.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
-|+++|-|++||||||+.++.... .....+.+|..+....+....+..+++-|.||+.+..+....+..+|.+.+..|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP--KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP--KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC--cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 368999999999999999998875 333456677777777666556678999999999988777777888888888887
Q ss_pred cCCccEEEEEEeCCCCCC----HHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFS----QEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~----~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.++++|+|++ ... .++ ..+...|..+-..-..+|.++|+||+|...
T Consensus 239 ----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 239 ----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred ----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 4899999987 222 223 333444555433445678999999999654
No 204
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.52 E-value=2.4e-13 Score=113.44 Aligned_cols=119 Identities=16% Similarity=0.235 Sum_probs=81.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcc------c----c----ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRA------F----K----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~------~----~----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (230)
.+..+|+++|+.++|||||+++|++... + . ......++|.......+.. .+..+.|+||||+.+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~- 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD- 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH-
Confidence 4558999999999999999999985311 0 0 0111356677665554443 567899999999743
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+...+......+|++++|+|+.+.....+...+..+... + .+++++++||+|+.+
T Consensus 88 ----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-g---i~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 88 ----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-G---VPYIVVFLNKCDMVD 142 (394)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCEEEEEEEecccCC
Confidence 222223334577999999999877777777777666543 3 234667899999875
No 205
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.52 E-value=1.8e-13 Score=101.48 Aligned_cols=113 Identities=22% Similarity=0.138 Sum_probs=71.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|++|+|||||++++++..... .. ..|....+ ..+.. ++ ..+.+|||||..... ..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~-~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~ 64 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPT-EY---VPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEFD-----------KL 64 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CC---CCceeeeeeEEEEE-CCEEEEEEEEECCCChhhc-----------cc
Confidence 378999999999999999998765321 11 11221111 12222 23 467899999975422 11
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...++.++|++++|+|++++-+... ..++..+.... ...|+++|+||+|+..
T Consensus 65 ~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 118 (173)
T cd04130 65 RPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRT 118 (173)
T ss_pred cccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhcc
Confidence 2245678899999999985544333 34555555432 1358999999999864
No 206
>PRK00007 elongation factor G; Reviewed
Probab=99.51 E-value=2.2e-13 Score=120.90 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=86.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccc---cc--c-----------CCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAF---KS--R-----------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~---~~--~-----------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (230)
...-++|+++|+.++|||||+++|+..... .. . ....++|.......+.+ .+..+.|+||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence 344589999999999999999999732210 00 0 02345677666666665 7889999999997
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
.++. .+ +......+|++++|+|+.......+...+..+.+. + .|.++++||+|....+
T Consensus 86 ~~f~-------~e----v~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~----~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 86 VDFT-------IE----VERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-K----VPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHH-------HH----HHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCCCCCC
Confidence 5421 12 23344556999999999878888888888776664 3 3688999999988643
No 207
>PLN03126 Elongation factor Tu; Provisional
Probab=99.51 E-value=3.2e-13 Score=114.41 Aligned_cols=120 Identities=15% Similarity=0.198 Sum_probs=83.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCcccc--------------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (230)
..+..+|+++|+.++|||||+++|++..... ......++|.+.....+.. ++..+.++||||+.+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~ 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH
Confidence 3556899999999999999999998632110 1122345666655555554 677899999999742
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+...+......+|++++|+|+.+.....+...+..+... +. +++++++||+|+..
T Consensus 157 -----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 157 -----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVD 211 (478)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEecccccC
Confidence 223333444577999999999877777777777655543 42 24888999999875
No 208
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.5e-13 Score=112.70 Aligned_cols=180 Identities=18% Similarity=0.237 Sum_probs=120.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
+.++.|-++|+-..|||||+.+|-+..+ .....+++|.....+.+..++|..++|.||||+..| ...
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF-----------~aM 217 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAF-----------SAM 217 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCcHHHH-----------HHH
Confidence 3558999999999999999999988876 334567899999988888889999999999997532 222
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcccCCchhhhhHHHH
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKKGATKL 176 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 176 (230)
-.......|.+++|+.+++..-+...+.+++.+.. ..|+++.+||+|+...+.+.+.. +|
T Consensus 218 RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A-----~VpiVvAinKiDkp~a~pekv~~---------------eL 277 (683)
T KOG1145|consen 218 RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA-----NVPIVVAINKIDKPGANPEKVKR---------------EL 277 (683)
T ss_pred HhccCccccEEEEEEEccCCccHhHHHHHHHHHhc-----CCCEEEEEeccCCCCCCHHHHHH---------------HH
Confidence 23444556899999999989988877777766553 46899999999987544332222 23
Q ss_pred HhHHHHHHHcCC-CcHHHHHHHHHHHHHhHHHHHHHHHHHHhchhccccccccC
Q 026970 177 RDQQFEVDSLKG-YSKREISELKEQMHKSYEDQLKRITEMCAGTCNDILNCETW 229 (230)
Q Consensus 177 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (230)
..+.-++++.|| ...-.+..++-+-...+++.+--+.+.++-+.......|+|
T Consensus 278 ~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~ 331 (683)
T KOG1145|consen 278 LSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMDLKADPKGPAEGW 331 (683)
T ss_pred HHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhhcccCCCCCceEE
Confidence 234445566555 22112223333333334444555555555555554444444
No 209
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=4e-12 Score=88.44 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee--EEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|..|+|||.|++.++..-+++. .+.|....+ ..+... ...++.+|||+|. ++++..
T Consensus 8 fkivlvgnagvgktclvrrftqglfppg----qgatigvdfmiktvev~gekiklqiwdtagq-----------erfrsi 72 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPG----QGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ-----------ERFRSI 72 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCC----CCceeeeeEEEEEEEECCeEEEEEEeeccch-----------HHHHHH
Confidence 7899999999999999999986654332 233433322 223321 3357899999995 455566
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+++.+|++++|+|++...+.. ...|+..+.++.... .-.|+|.||.|+.+
T Consensus 73 tqsyyrsahalilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~d 126 (213)
T KOG0095|consen 73 TQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLAD 126 (213)
T ss_pred HHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhh
Confidence 677888999999999998554443 367888887764432 24679999999875
No 210
>PRK12739 elongation factor G; Reviewed
Probab=99.50 E-value=5.6e-13 Score=118.44 Aligned_cols=119 Identities=22% Similarity=0.307 Sum_probs=86.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccc----------------cCCCCccceeeeeEEEEeeCCeEEEEEeCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (230)
...++|+++|+.++|||||+++|+....... .....++|.......+.+ ++..+.++||||+.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHH
Confidence 3458999999999999999999975321100 012446777776666666 78899999999975
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
++ ..........+|++++|+|+.+.....+...+..+.+. + .|.++++||+|+...
T Consensus 85 ~f-----------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 DF-----------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-G----VPRIVFVNKMDRIGA 140 (691)
T ss_pred HH-----------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 31 12233444566999999999878887777777766553 3 378899999999864
No 211
>PRK10218 GTP-binding protein; Provisional
Probab=99.50 E-value=7.4e-13 Score=114.93 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc-cccc-------------CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (230)
-++|+++|+.++|||||+++|+.... +... ....++|.......+.+ ++..+.+|||||+.++.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH-
Confidence 47999999999999999999996422 1110 11345566665555655 77899999999987643
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
......+..+|++++|+|+.+.....+...+..+... + .|.++++||+|....
T Consensus 83 ----------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-g----ip~IVviNKiD~~~a 135 (607)
T PRK10218 83 ----------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-G----LKPIVVINKVDRPGA 135 (607)
T ss_pred ----------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-C----CCEEEEEECcCCCCC
Confidence 2233455678999999999877666666666655442 3 367999999998643
No 212
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=5e-13 Score=98.63 Aligned_cols=121 Identities=18% Similarity=0.136 Sum_probs=85.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHH
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE 92 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~ 92 (230)
+.....+|+++|.+|||||+++-++....+..... ..+-.+.....+.. ++ ..+++|||.|.. .
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~--sTiGIDFk~kti~l-~g~~i~lQiWDtaGQe-----------r 73 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFI--STIGIDFKIKTIEL-DGKKIKLQIWDTAGQE-----------R 73 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCcc--ceEEEEEEEEEEEe-CCeEEEEEEEEcccch-----------h
Confidence 33455899999999999999999988665422222 22222333333333 33 478899999953 4
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+......++++++++++|+|+++.-+.+. ..|++.+.+.... ..+.++|+||+|...
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEE 131 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccc
Confidence 45667778899999999999975544443 6788888887443 458999999999875
No 213
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.50 E-value=3.2e-13 Score=114.72 Aligned_cols=121 Identities=12% Similarity=0.154 Sum_probs=81.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------------------------CCCCccceeeeeEEE
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------------------------ASSSGVTSTCEMQRT 63 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~ 63 (230)
......+|+++|+.++|||||++.|+........ ....++|....+..+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 3466699999999999999999999765421110 012345666665555
Q ss_pred EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 026970 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 143 (230)
Q Consensus 64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv 143 (230)
.+ ++..+.|+||||+.+ +...+......+|++++|+|+...+...+...+..+.. ++. ++++++
T Consensus 103 ~~-~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~iIvv 166 (474)
T PRK05124 103 ST-EKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHLVVA 166 (474)
T ss_pred cc-CCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---CceEEE
Confidence 54 667899999999632 22222233467899999999986665555444443333 342 478999
Q ss_pred EeCCCCCC
Q 026970 144 FTGGDELE 151 (230)
Q Consensus 144 ~tk~D~~~ 151 (230)
+||+|+..
T Consensus 167 vNKiD~~~ 174 (474)
T PRK05124 167 VNKMDLVD 174 (474)
T ss_pred EEeecccc
Confidence 99999874
No 214
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.49 E-value=6.5e-13 Score=113.90 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=81.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccc--c-C-----------------CCCccceeeeeEEEEeeCCeEEEEEeC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS--R-A-----------------SSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~--~-~-----------------~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (230)
...++|+++|+.++|||||+++|+....... + . ...+++.......+.+ ++..+.++||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence 4558999999999999999999863221100 0 0 0123444444455554 6789999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhh
Q 026970 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET 156 (230)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~ 156 (230)
||+.++. .....++..+|++++|+|+.+.+......+++.+... ..|+++++||+|+...+...
T Consensus 88 PG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~~PiivviNKiD~~~~~~~~ 151 (527)
T TIGR00503 88 PGHEDFS-----------EDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR-----DTPIFTFMNKLDRDIRDPLE 151 (527)
T ss_pred CChhhHH-----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECccccCCCHHH
Confidence 9985432 2223344567999999999877776666666544331 34899999999986433333
Q ss_pred H
Q 026970 157 L 157 (230)
Q Consensus 157 ~ 157 (230)
+
T Consensus 152 l 152 (527)
T TIGR00503 152 L 152 (527)
T ss_pred H
Confidence 3
No 215
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.49 E-value=5.8e-14 Score=115.28 Aligned_cols=134 Identities=21% Similarity=0.232 Sum_probs=88.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHH
Q 026970 11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG 90 (230)
Q Consensus 11 ~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~ 90 (230)
.+++..++.++++|+|.+++|||||+|.++..+. ...+...|+..-+.........+|+++||||+.+.......+.
T Consensus 160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~I 236 (620)
T KOG1490|consen 160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNII 236 (620)
T ss_pred cCCCCCCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHH
Confidence 3566677889999999999999999999987764 2333344444433333333667899999999998543322211
Q ss_pred HHHHHHHHhhcCCccEEEEEEeCCCC--CCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 91 KEIVKCIGMAKDGIHAVLVVFSVRSR--FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~d~~~~--~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
++... .....--.+|||++|.+.. .+... ..++..++.+|.. +++|+|+||+|.+.+
T Consensus 237 -EmqsI-TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 237 -EMQII-TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRP 296 (620)
T ss_pred -HHHHH-HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCc
Confidence 12111 1111122479999999744 33333 5667777777763 489999999999864
No 216
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.49 E-value=6.9e-13 Score=102.14 Aligned_cols=115 Identities=19% Similarity=0.255 Sum_probs=74.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccc-----------------------------cccCCCCccceeeeeEEEEeeCCeEE
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVLKDGQVV 71 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~ 71 (230)
+|+++|+.++|||||+.+|+..... .......++|.......+.+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 4899999999999999999643210 00111345666666666665 78899
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (230)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ivv~ 144 (230)
.++||||+.++ ...+......+|++++|+|+.+. ........+.... .++ .+|+++++
T Consensus 80 ~liDtpG~~~~-----------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~iiivv 144 (219)
T cd01883 80 TILDAPGHRDF-----------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLG---VKQLIVAV 144 (219)
T ss_pred EEEECCChHHH-----------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcC---CCeEEEEE
Confidence 99999996431 12222344568999999999753 2222333333332 223 24799999
Q ss_pred eCCCCCC
Q 026970 145 TGGDELE 151 (230)
Q Consensus 145 tk~D~~~ 151 (230)
||+|+..
T Consensus 145 NK~Dl~~ 151 (219)
T cd01883 145 NKMDDVT 151 (219)
T ss_pred Ecccccc
Confidence 9999874
No 217
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.48 E-value=8.6e-13 Score=98.08 Aligned_cols=116 Identities=14% Similarity=0.131 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|..||||||+++.|....... ..+|.......+.. .+..+.++|.+|-... ...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~~-----------~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQESF-----------RPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGGG-----------GGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEeccccccc-----------ccc
Confidence 456899999999999999999998754322 22244455555554 7789999999995422 134
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~ 151 (230)
...++..+|+++||+|..+.- ......+.+.+.+... ...|+++++||.|...
T Consensus 75 w~~y~~~~~~iIfVvDssd~~--~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPE--RLQEAKEELKELLNDPELKDIPILILANKQDLPD 129 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGG--GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT
T ss_pred ceeeccccceeEEEEecccce--eecccccchhhhcchhhcccceEEEEeccccccC
Confidence 446678899999999997432 1223333444444322 3469999999999865
No 218
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.48 E-value=7.8e-13 Score=113.39 Aligned_cols=120 Identities=15% Similarity=0.186 Sum_probs=79.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccc--cc------------------CCCCccceeeeeEEEEeeCCeEEEEEeC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK--SR------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~--~~------------------~~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (230)
...++|+++|+.|+|||||+++|+...... .+ ....+++.......+.+ ++..+.+|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence 455899999999999999999996322100 00 00123344444444554 6789999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
||+.++. ......+..+|++++|+|+.+........+++..... ..|+++++||+|....+
T Consensus 87 PG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 87 PGHEDFS-----------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR-----DTPIFTFINKLDRDGRE 147 (526)
T ss_pred CCchhhH-----------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCcccccC
Confidence 9986532 1122334567999999999877766666666544332 34899999999987544
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.47 E-value=7.1e-13 Score=115.03 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=75.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-----CC------------eEEEEEeCCCCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----DG------------QVVNVIDTPGLF 80 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----~~------------~~~~liDtPG~~ 80 (230)
.++.|+++|++++|||||+|+|.+..... ....++|........... .+ ..+.||||||+.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~--~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAA--KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc--CCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 34789999999999999999998875422 222333333222211110 00 127899999975
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
++. ......+..+|++++|+|+++.+...+...+..+... ..|+++++||+|+.
T Consensus 83 ~f~-----------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AFT-----------NLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-----KTPFVVAANKIDRI 136 (586)
T ss_pred HHH-----------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence 432 2222344678999999999877777776666655442 34799999999985
No 220
>PRK09866 hypothetical protein; Provisional
Probab=99.47 E-value=1.6e-12 Score=110.93 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=58.4
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 148 (230)
..++|+||||+..+.. ..+.+.+.+ ....+|+|+||+|++...+..+...++.+.+. ++ ..|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K--~~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQ--SVPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CC--CCCEEEEEEccc
Confidence 4689999999975431 223333333 45677999999999866788888888777764 32 138999999999
Q ss_pred CCCCC---hhhHHHHhc
Q 026970 149 ELEDN---DETLEDYLG 162 (230)
Q Consensus 149 ~~~~~---~~~~~~~l~ 162 (230)
..+.. .+.+.++++
T Consensus 301 l~dreeddkE~Lle~V~ 317 (741)
T PRK09866 301 QQDRNSDDADQVRALIS 317 (741)
T ss_pred CCCcccchHHHHHHHHH
Confidence 86422 244555543
No 221
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.47 E-value=4.8e-13 Score=101.35 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=71.0
Q ss_pred EcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE--EEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc
Q 026970 25 VGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR--TVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (230)
Q Consensus 25 iG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (230)
+|..|||||||+++++..... . ....|....+.. +.. .....+.||||||...+ ......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~---~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~-----------~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-K---KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF-----------GGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-C---CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhHHHh
Confidence 599999999999999865431 1 112233322222 221 12357899999996432 23334567
Q ss_pred CCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 102 ~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.++|++++|+|++++.+... ..|+..+.+... ..|+++|+||+|+..
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~---~~piilvgNK~Dl~~ 113 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDVKD 113 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence 88999999999986654443 356666665432 358999999999753
No 222
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.47 E-value=9.1e-13 Score=116.12 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=80.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccc--------------c-----------------CCCCccceeeeeEEEE
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R-----------------ASSSGVTSTCEMQRTV 64 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~--------------~-----------------~~~~~~t~~~~~~~~~ 64 (230)
..+..+|+++|++++|||||++.|+....... + ....++|....+..+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 34558999999999999999999986543111 0 0113455555555555
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970 65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (230)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~ 144 (230)
+ ++..+.|+||||+.+ +...+......+|++++|+|+.......+...+..+... +. +++++++
T Consensus 101 ~-~~~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivvv 164 (632)
T PRK05506 101 T-PKRKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLAV 164 (632)
T ss_pred c-CCceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEEE
Confidence 4 677899999999632 222222345678999999999866665555555444432 42 4789999
Q ss_pred eCCCCCC
Q 026970 145 TGGDELE 151 (230)
Q Consensus 145 tk~D~~~ 151 (230)
||+|+..
T Consensus 165 NK~D~~~ 171 (632)
T PRK05506 165 NKMDLVD 171 (632)
T ss_pred Eeccccc
Confidence 9999874
No 223
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.46 E-value=3.1e-13 Score=99.02 Aligned_cols=115 Identities=22% Similarity=0.228 Sum_probs=72.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
+|+++|..|+|||||++.+.+........ ...........+.. ++ ..+.+||+||.... . ....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~--------~---~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYI--PTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERF--------D---SLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSE--TTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGG--------H---HHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccc--cccccccccccccc-cccccccccccccccccc--------c---cccc
Confidence 58999999999999999999775422111 11112222222222 23 36889999995421 1 2223
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|.+++-+... ..++..+..... ...|+++|+||.|...
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGG
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccceeeeccccccc
Confidence 45677899999999975433222 456666666544 2358999999999775
No 224
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.46 E-value=6.4e-13 Score=95.38 Aligned_cols=114 Identities=21% Similarity=0.204 Sum_probs=68.8
Q ss_pred EEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee---CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 24 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 24 liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
++|++|+|||||+|++++...... ....|. ......... .+..+.++||||..... ......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~---~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE---EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc---ccccch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence 589999999999999998764211 111222 222222221 25678999999976422 111345
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
.+.+|++++|+|+.........................|+++|+||+|....
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 5778999999999844333332221011111122335689999999998763
No 225
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=7.7e-13 Score=108.68 Aligned_cols=130 Identities=19% Similarity=0.223 Sum_probs=87.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC-CCCCcHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD-FSAGSEFVGKEIVKC 96 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~-~~~~~~~~~~~~~~~ 96 (230)
.++.|+++|+|++|||||+|+|+..+...+.+ .+++|.+.-...+. .+|.++.++||+|+-+ .....+.+ -+..+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~-~~G~~v~L~DTAGiRe~~~~~iE~~--gI~rA 342 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVT-VNGVPVRLSDTAGIREESNDGIEAL--GIERA 342 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEee-cCCeEEEEEeccccccccCChhHHH--hHHHH
Confidence 44899999999999999999999988744432 45566666555555 4999999999999987 22222221 12222
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh-ccccc------ceEEEEEeCCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF-GKKIF------DYMIVVFTGGDELED 152 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~-~~~~~------~~~ivv~tk~D~~~~ 152 (230)
......+|++++|+|+....+..+....+.+...- |-... .+++++.||.|...+
T Consensus 343 -~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 343 -RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred -HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 23345779999999996555555544444443321 11122 589999999998864
No 226
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.46 E-value=8.2e-13 Score=97.26 Aligned_cols=120 Identities=16% Similarity=0.240 Sum_probs=68.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE-EEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR-TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...|+|+|++|+|||+|+..|.......+..+ ....... +....+..+.+||+||+..-. ..+...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS-----~e~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~ 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTS-----MENNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B--------SSEEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeecc-----ccCCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence 46899999999999999999987643222111 1111111 111245689999999987533 2222221
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccceEEEEEeCCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivv~tk~D~~~~ 152 (230)
. ..+.+.+|+||+|.. .+...-....+.|...+. .....|++|+.||.|++..
T Consensus 71 ~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 71 K-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp H-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred h-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 1 234567999999986 343444555555555443 2234589999999999863
No 227
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.46 E-value=8.4e-13 Score=112.85 Aligned_cols=118 Identities=24% Similarity=0.317 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC--CcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~ 97 (230)
.+|+++|.||+|||||+|+|+|....... -+++|.+........ .+..+.++|.||.++... .++.+..+ ++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgN--wpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~---~l 77 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGN--WPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARD---FL 77 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecC--CCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHH---HH
Confidence 57999999999999999999999864443 467788887777765 777899999999997553 22323222 22
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
. ...+|+++-|+|++ .+..+-.-.++ +.+. | .|+++++|.+|..+.
T Consensus 78 l--~~~~D~ivnVvDAt-nLeRnLyltlQ-LlE~-g----~p~ilaLNm~D~A~~ 123 (653)
T COG0370 78 L--EGKPDLIVNVVDAT-NLERNLYLTLQ-LLEL-G----IPMILALNMIDEAKK 123 (653)
T ss_pred h--cCCCCEEEEEcccc-hHHHHHHHHHH-HHHc-C----CCeEEEeccHhhHHh
Confidence 1 35789999999998 55544444443 3332 3 379999999998764
No 228
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.46 E-value=1.6e-12 Score=99.85 Aligned_cols=117 Identities=20% Similarity=0.097 Sum_probs=70.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe---eCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
....+|+++|++|||||||++.++....... ...|....+..... .....+.++||||...+.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~---------- 72 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKK----YIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFG---------- 72 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCC----CCCccceEEEEEEEEECCeEEEEEEEECCCchhhh----------
Confidence 4458999999999999999976544332111 11222222222211 123578899999964321
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....++..++++++|+|++++.+... ..++..+.+... ..|+++|+||+|+..
T Consensus 73 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 73 -GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVKD 127 (215)
T ss_pred -hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccCcc
Confidence 122234567799999999985554333 344444444322 347889999999753
No 229
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.46 E-value=1.2e-12 Score=109.44 Aligned_cols=116 Identities=14% Similarity=0.160 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccc-------------------------------cCCCCccceeeeeEEEEeeCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKS-------------------------------RASSSGVTSTCEMQRTVLKDG 68 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~ 68 (230)
++|+++|+.++|||||++.|+....... .....++|.+..+..+.+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 4799999999999999999974432110 011235566666666655 67
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 148 (230)
..+.|+||||+.+ +...+......+|++++|+|+.......+...+..+.. ++ .+++++++||+|
T Consensus 80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~-~~---~~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASL-LG---IRHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHH-cC---CCcEEEEEEecc
Confidence 7999999999642 22223334567899999999987776666555554444 34 236899999999
Q ss_pred CCC
Q 026970 149 ELE 151 (230)
Q Consensus 149 ~~~ 151 (230)
...
T Consensus 145 ~~~ 147 (406)
T TIGR02034 145 LVD 147 (406)
T ss_pred ccc
Confidence 874
No 230
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.46 E-value=1.5e-12 Score=97.81 Aligned_cols=113 Identities=19% Similarity=0.130 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|++|+|||||++.++....... . ..|....+. .+.. ++ ..+.++||||.......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~-~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~----------- 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEE-Y---HPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYERL----------- 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-c---CCcccceEEEEEEE-CCEEEEEEEEECCCChhcccc-----------
Confidence 5899999999999999999985543211 1 112211111 2222 22 35789999997543211
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++++++++.-+... ..++..+..... ..|+++|+||+|+..
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~~ 119 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLRQ 119 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhhh
Confidence 1123467899999999974433222 245666655432 368999999999753
No 231
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.45 E-value=5.7e-12 Score=91.05 Aligned_cols=131 Identities=17% Similarity=0.211 Sum_probs=95.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccc-----cCCCCc---cceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFV 89 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~ 89 (230)
...+|+++|+.++||||++..+........ ..+..+ +|....+.......+..+.+++|||+..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R-------- 80 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER-------- 80 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH--------
Confidence 346899999999999999999987653211 222333 6666677777765668999999999754
Q ss_pred HHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC-hhhHHHHhcc
Q 026970 90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN-DETLEDYLGR 163 (230)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~-~~~~~~~l~~ 163 (230)
+.-.+....+++.++++++|.+...+.+....++++..... .|++|.+||.|+.... ++.+.++++.
T Consensus 81 ---F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~ppe~i~e~l~~ 148 (187)
T COG2229 81 ---FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDALPPEKIREALKL 148 (187)
T ss_pred ---HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCCCHHHHHHHHHh
Confidence 23344456677889999999886777666777777666532 5899999999998644 4567777764
No 232
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.45 E-value=1.2e-12 Score=113.89 Aligned_cols=117 Identities=22% Similarity=0.242 Sum_probs=76.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccc------cC-------CCCccceeeeeEEEEee--C--CeEEEEEeCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS------RA-------SSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD 81 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~------~~-------~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~~~ 81 (230)
.++|+++|+.++|||||+++|+....... .. ...++|.......+.+. + ...+.||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 47999999999999999999986532101 00 12355655544444332 2 25789999999865
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+. .....++..+|++++|+|+++..+..+...+....+ . ..|+++|+||+|+..
T Consensus 83 F~-----------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~--~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 83 FS-----------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---N--DLEIIPVINKIDLPS 136 (595)
T ss_pred HH-----------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---c--CCCEEEEEECcCCCc
Confidence 32 223344567799999999987776655443333222 1 237999999999864
No 233
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.45 E-value=3.5e-12 Score=98.22 Aligned_cols=117 Identities=21% Similarity=0.137 Sum_probs=74.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccC------------CCCccceeeee--E---------------------EEEe
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRA------------SSSGVTSTCEM--Q---------------------RTVL 65 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~------------~~~~~t~~~~~--~---------------------~~~~ 65 (230)
+|+++|+.++|||||++.++......... ...+.|..... . ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 57899999999999999998533211000 00111110000 0 0111
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (230)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 145 (230)
..+..+.++||||+.++ ...+...+.. ..+|++++|+|+...+...+...+.++... + .|+++|+|
T Consensus 81 ~~~~~i~liDtpG~~~~-------~~~~~~~~~~--~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~----ip~ivvvN 146 (224)
T cd04165 81 KSSKLVTFIDLAGHERY-------LKTTLFGLTG--YAPDYAMLVVAANAGIIGMTKEHLGLALAL-N----IPVFVVVT 146 (224)
T ss_pred eCCcEEEEEECCCcHHH-------HHHHHHhhcc--cCCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEE
Confidence 24678999999997431 1222222211 357999999999878888888888877664 3 37899999
Q ss_pred CCCCCC
Q 026970 146 GGDELE 151 (230)
Q Consensus 146 k~D~~~ 151 (230)
|+|+.+
T Consensus 147 K~D~~~ 152 (224)
T cd04165 147 KIDLAP 152 (224)
T ss_pred CccccC
Confidence 999875
No 234
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.45 E-value=1.8e-12 Score=109.41 Aligned_cols=119 Identities=20% Similarity=0.269 Sum_probs=78.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCccceeeeeEEEEeeC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKD 67 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~ 67 (230)
.+..+|+++|+.++|||||++.|+....... .....++|.+.....+.. .
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~ 83 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-D 83 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-C
Confidence 4558999999999999999999985321000 011346677766666654 6
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC---CCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR---FSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~---~~~~~~~~l~~l~~~~~~~~~~~~ivv~ 144 (230)
+..+.||||||+.+ +...+...+..+|++++|+|++++ ........+.. .+.++ ..++++|+
T Consensus 84 ~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~-~~~~~---~~~iIVvi 148 (426)
T TIGR00483 84 KYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFL-ARTLG---INQLIVAI 148 (426)
T ss_pred CeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHH-HHHcC---CCeEEEEE
Confidence 77899999999632 223333445678999999999865 22222222222 23333 24799999
Q ss_pred eCCCCCC
Q 026970 145 TGGDELE 151 (230)
Q Consensus 145 tk~D~~~ 151 (230)
||+|+..
T Consensus 149 NK~Dl~~ 155 (426)
T TIGR00483 149 NKMDSVN 155 (426)
T ss_pred EChhccC
Confidence 9999874
No 235
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.44 E-value=2.1e-12 Score=94.36 Aligned_cols=109 Identities=22% Similarity=0.159 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
.+|+++|.+|+|||||++.++....... .. ++.......+.. ++ ..+.+|||+|... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~---~~~~~~~~~i~~-~~~~~~l~i~D~~g~~~-----~---------- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ES---PEGGRFKKEVLV-DGQSHLLLIRDEGGAPD-----A---------- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC-CC---CCccceEEEEEE-CCEEEEEEEEECCCCCc-----h----------
Confidence 3789999999999999998876543211 11 111111122222 44 4588999999742 0
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
..+..+|++++|+|.+++-+... ..++..+..... ....|+++|.||.|+.
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~ 112 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS 112 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence 13356799999999987665555 456666655422 1235899999998864
No 236
>PRK13351 elongation factor G; Reviewed
Probab=99.44 E-value=1.5e-12 Score=115.93 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=82.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCccceeeeeEEEEeeCCeEEEEEeCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (230)
...++|+++|+.|+|||||+++|+........ ....++|.......+.+ .+..+.+|||||..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~ 84 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHI 84 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcH
Confidence 34589999999999999999999753211000 00234455555555555 67899999999986
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
++. ......+..+|++++|+|+++.........+..+... ..|+++++||+|+...+
T Consensus 85 df~-----------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~~~ 141 (687)
T PRK13351 85 DFT-----------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-----GIPRLIFINKMDRVGAD 141 (687)
T ss_pred HHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCCCCCCC
Confidence 422 2233455677999999999877776666666555442 24789999999988643
No 237
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.44 E-value=2.4e-12 Score=104.71 Aligned_cols=117 Identities=20% Similarity=0.200 Sum_probs=67.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCc---cceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
.+.+|+|+|.+|+|||||||+|.|...-..+....| +|.....+.. ++...+++||.||.+.+...... +.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~--p~~pnv~lWDlPG~gt~~f~~~~----Yl 107 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH--PKFPNVTLWDLPGIGTPNFPPEE----YL 107 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--HHH----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC--CCCCCCeEEeCCCCCCCCCCHHH----HH
Confidence 458999999999999999999987543222222222 3444444433 35567999999999865443332 22
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 149 (230)
+. ..+...|.+|++. .+ +++..+..+.+.+.+. | +++++|-||.|.
T Consensus 108 ~~--~~~~~yD~fiii~-s~-rf~~ndv~La~~i~~~-g----K~fyfVRTKvD~ 153 (376)
T PF05049_consen 108 KE--VKFYRYDFFIIIS-SE-RFTENDVQLAKEIQRM-G----KKFYFVRTKVDS 153 (376)
T ss_dssp HH--TTGGG-SEEEEEE-SS-S--HHHHHHHHHHHHT-T-----EEEEEE--HHH
T ss_pred HH--ccccccCEEEEEe-CC-CCchhhHHHHHHHHHc-C----CcEEEEEecccc
Confidence 22 1233557766654 34 8999999998888885 4 379999999985
No 238
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.41 E-value=3.8e-12 Score=96.18 Aligned_cols=117 Identities=18% Similarity=0.033 Sum_probs=71.0
Q ss_pred CeEEEEEcCCCCcHHHHHH-HHhCCcccccc-CCCCcccee--eeeE-E--------EEe-eCCeEEEEEeCCCCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGN-SILGRRAFKSR-ASSSGVTST--CEMQ-R--------TVL-KDGQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin-~l~~~~~~~~~-~~~~~~t~~--~~~~-~--------~~~-~~~~~~~liDtPG~~~~~~ 84 (230)
..+|+++|.+|||||||+. .+.+....... ......|.. ..+. . ... .....+.+|||+|....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3689999999999999996 55443221000 011112221 0110 0 011 12347889999997421
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+++++|++++|+|++++.+.... .|+..+..... ..|+++|+||+|+..
T Consensus 80 -----------~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~---~~piilvgNK~DL~~ 134 (195)
T cd01873 80 -----------DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP---RVPVILVGCKLDLRY 134 (195)
T ss_pred -----------hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhccc
Confidence 112367899999999999866555443 36666665432 348999999999754
No 239
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.41 E-value=3.8e-12 Score=110.90 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=77.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCccceeeeeEEEEee----CCeEEEEEeCCCCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPGLF 80 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG~~ 80 (230)
..++|+++|+.++|||||+.+|+........ ....++|.......+.+. .+..+.||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 4479999999999999999999764321000 112355555444434332 24678999999987
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
++. ..+..++..+|++++|+|+++.....+...+..+... ..|+++|+||+|+..
T Consensus 86 dF~-----------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~-----~lpiIvViNKiDl~~ 140 (600)
T PRK05433 86 DFS-----------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----DLEIIPVLNKIDLPA 140 (600)
T ss_pred HHH-----------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEEEECCCCCc
Confidence 532 2223345567999999999877766554444333221 247999999999864
No 240
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2.6e-11 Score=84.21 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
.-..+++++|.+.+|||||+.+.++......-.+.-++.... ..+.. .....+++|||.|... ++.
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKv--KTvyr~~kRiklQiwDTagqEr-----------yrt 85 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV--KTVYRSDKRIKLQIWDTAGQER-----------YRT 85 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEE--eEeeecccEEEEEEEecccchh-----------hhH
Confidence 344699999999999999999999876533222222222222 22211 1335789999999642 334
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
....++++++++|+++|.++.-+... ..+...++...-. ..++|+|.||||+-.+.
T Consensus 86 iTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~--naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 86 ITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWD--NAQVILVGNKCDMDSER 142 (193)
T ss_pred HHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeecc--CceEEEEecccCCccce
Confidence 44567889999999999975433332 4455555554322 34899999999987643
No 241
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.41 E-value=7.8e-12 Score=96.07 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=75.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|+.|+||||..+.+.+...+. ....-+.|...+...+.......+.+||+||..+..... +.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~-dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR-DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG-GGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch-hccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence 68999999999999999998765322 223345677777666655466799999999987643221 00111234
Q ss_pred cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+.+++++|||+|+. +.....-..+...+..........++.+++.|+|.+.
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 57788999999996 3443333444444444443444568999999999986
No 242
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.40 E-value=6e-12 Score=106.25 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=79.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccc-----------------------------ccCCCCccceeeeeEEEEeeC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLKD 67 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~ 67 (230)
.+..+|+++|+.++|||||+..|+...... ......++|.+..+..+.+ +
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~ 83 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P 83 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-C
Confidence 455899999999999999999887522100 0112346677766666654 6
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhcccccceE
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYM 140 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~ 140 (230)
+..+.|+||||+.+ +...+......+|++++|+|+.... .......+..+.. +|. +++
T Consensus 84 ~~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi---~~i 148 (446)
T PTZ00141 84 KYYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGV---KQM 148 (446)
T ss_pred CeEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCC---CeE
Confidence 78999999999643 2333344456789999999997553 2344555554443 342 368
Q ss_pred EEEEeCCCC
Q 026970 141 IVVFTGGDE 149 (230)
Q Consensus 141 ivv~tk~D~ 149 (230)
++++||+|.
T Consensus 149 iv~vNKmD~ 157 (446)
T PTZ00141 149 IVCINKMDD 157 (446)
T ss_pred EEEEEcccc
Confidence 899999995
No 243
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.39 E-value=2e-11 Score=93.98 Aligned_cols=116 Identities=18% Similarity=0.111 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEE-EeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT-VLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+|+++|..|+|||||++++.+....... ..|....+... .... ...+.+|||+|.. ++...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~-----------~~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY----PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE-----------EYRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccC----CCceeeeeEEEEEEeCCCEEEEEeecCCCHH-----------HHHHH
Confidence 79999999999999999999987652221 11222222211 1111 3468899999964 34455
Q ss_pred HHhhcCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
...++.++++++++++... +.......+...+....+ ...++++|.||+|+...
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccc
Confidence 6677889999999999873 233333566666666543 23589999999999863
No 244
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.39 E-value=1.2e-11 Score=95.41 Aligned_cols=112 Identities=20% Similarity=0.224 Sum_probs=73.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
..++..|+++|.+|+|||||+|.|++...........+ + + .+....+..+.++||||.. ..+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~----i-~i~~~~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P----I-TVVTGKKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c----E-EEEecCCceEEEEeCCchH----------HHHHH
Confidence 45568899999999999999999987532111111111 1 1 1111257789999999842 12222
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
. ...+|++++|+|+...+...+..++..+... +. +.+++|+||+|...
T Consensus 100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~---p~vi~VvnK~D~~~ 147 (225)
T cd01882 100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-GF---PRVMGVLTHLDLFK 147 (225)
T ss_pred H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CC---CeEEEEEeccccCC
Confidence 2 3456999999999877777777776666553 32 23556999999874
No 245
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.38 E-value=6.9e-12 Score=105.02 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCccceeeeeEEEE--------------e-----------eCCeEE
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTV--------------L-----------KDGQVV 71 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~--------------~-----------~~~~~~ 71 (230)
+..+|+++|+.++|||||+++|++...... .....+.|....+.... . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 447999999999999999999987532110 01122333333221110 0 014679
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
.++||||+.+ +...+......+|++++|+|+++.. .......+..+. .++ .+++++++||+|+.
T Consensus 83 ~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~g---i~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIG---IKNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcC---CCeEEEEEEccccC
Confidence 9999999632 2233333445679999999998655 444445554443 233 23689999999987
Q ss_pred C
Q 026970 151 E 151 (230)
Q Consensus 151 ~ 151 (230)
.
T Consensus 148 ~ 148 (406)
T TIGR03680 148 S 148 (406)
T ss_pred C
Confidence 5
No 246
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.38 E-value=1.7e-11 Score=86.71 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=83.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+|+++|..|+||||+++.+.+... ....+|...+.....+ ++..+.++|.-|. ..++.+.+
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq-----------~~lr~~W~ 78 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQ-----------KTLRSYWK 78 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCc-----------chhHHHHH
Confidence 58999999999999999999999863 2333466666666665 7889999998884 34557777
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~ 151 (230)
.++...|++++|+|..++....+ ....+...+. ..+-.+++++.||.|...
T Consensus 79 nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 79 NYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred HhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence 88888999999999976654433 2333333332 123358999999999863
No 247
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.38 E-value=9.5e-12 Score=104.19 Aligned_cols=122 Identities=16% Similarity=0.239 Sum_probs=75.9
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEee-------------------------CC
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLK-------------------------DG 68 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~-------------------------~~ 68 (230)
...+..+|+++|+.++|||||+.+|++..... ......+.|....+....+. ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 34455899999999999999999997752110 11112344554432211110 02
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 147 (230)
..+.|+||||..+ +...+......+|++++|+|+++.. .......+..+.. .+ ..++++|+||+
T Consensus 85 ~~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~---i~~iiVVlNK~ 149 (411)
T PRK04000 85 RRVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IG---IKNIVIVQNKI 149 (411)
T ss_pred cEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEEEee
Confidence 5789999999532 2223333345679999999998655 4555555554433 23 23689999999
Q ss_pred CCCC
Q 026970 148 DELE 151 (230)
Q Consensus 148 D~~~ 151 (230)
|+.+
T Consensus 150 Dl~~ 153 (411)
T PRK04000 150 DLVS 153 (411)
T ss_pred cccc
Confidence 9875
No 248
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=1.3e-11 Score=102.94 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=98.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
.++.|.++|+-..|||||+..|-+.+. ......++|++...+.+... ....++|+||||+..| ..
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF-----------t~ 70 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF-----------TA 70 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH-----------HH
Confidence 347999999999999999999988876 33456789999998888875 3478999999997532 22
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~ 162 (230)
.-.....-+|.+++|+++++.+.+.....+..++.. + .|+++.+||+|+.+.++..+..-+.
T Consensus 71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-~----vP~iVAiNKiDk~~~np~~v~~el~ 132 (509)
T COG0532 71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-G----VPIVVAINKIDKPEANPDKVKQELQ 132 (509)
T ss_pred HHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-C----CCEEEEEecccCCCCCHHHHHHHHH
Confidence 222344456899999999999999998888888774 3 4899999999999765554444333
No 249
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.37 E-value=3.6e-12 Score=91.86 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccC---CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA---SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
...++|+++|.+|+|||||+|.+...++..--. +....|+...+. ..-..+++|||.|...+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd----~~~vtlQiWDTAGQERF----------- 71 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD----DRSVTLQIWDTAGQERF----------- 71 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc----CeEEEEEEEecccHHHh-----------
Confidence 344899999999999999999998876522111 111122222111 12236789999996433
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc--ccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~ 151 (230)
...-...++++|.+++|+|++..-+.+. ..|-+.+..... .+..-|+||++||.|.-.
T Consensus 72 qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 72 QSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred hhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 3333467899999999999974433332 233333333222 223448999999999754
No 250
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.36 E-value=1.2e-11 Score=107.82 Aligned_cols=113 Identities=20% Similarity=0.240 Sum_probs=72.9
Q ss_pred cCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCcc
Q 026970 26 GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIH 105 (230)
Q Consensus 26 G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (230)
|.+|+|||||+|+|+|.... .+ ..+++|.+.....+.. ++..+.++||||..+......+ +.+.... .....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-v~-n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~-l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-VG-NWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLE--EEVARDY-LLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-ec-CCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchH--HHHHHHH-HhhcCCC
Confidence 89999999999999998642 22 2455666665555554 6678999999999875432211 1222211 1124689
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 106 AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 106 ~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
++++|+|+++ +... ......+.+ ...|+++|+||+|+.+
T Consensus 75 vvI~VvDat~-ler~-l~l~~ql~~-----~~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 75 LVVNVVDASN-LERN-LYLTLQLLE-----LGIPMILALNLVDEAE 113 (591)
T ss_pred EEEEEecCCc-chhh-HHHHHHHHh-----cCCCEEEEEehhHHHH
Confidence 9999999983 3322 222222322 1358999999999864
No 251
>PTZ00416 elongation factor 2; Provisional
Probab=99.35 E-value=3.8e-12 Score=114.92 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=81.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCccceeeeeEEEEee---------CCeEEE
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------DGQVVN 72 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~~ 72 (230)
....++|+++|+.++|||||+++|++....... ....++|.........+. .+..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 345679999999999999999999874321110 011233443322223321 146799
Q ss_pred EEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 73 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
++||||+.++ ...+......+|++++|+|+...+...+...++.+.+. ..|+++++||+|+.
T Consensus 96 liDtPG~~~f-----------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDF-----------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-----RIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhH-----------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence 9999998652 23334556778999999999888888887777666553 24799999999997
No 252
>PTZ00258 GTP-binding protein; Provisional
Probab=99.35 E-value=1.1e-11 Score=101.94 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=65.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC----------------eEEEEEeCCCC
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGL 79 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~ 79 (230)
.....+|+|+|.|++|||||+|+|++.... ....+++|..+....+...+. ..+.++||||+
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~--v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVP--AENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCccc--ccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 345579999999999999999999988652 223456676666655544322 25899999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (230)
.........+...+...+ +.+|++++|+|+.
T Consensus 96 v~ga~~g~gLg~~fL~~I----r~aD~il~VVd~f 126 (390)
T PTZ00258 96 VKGASEGEGLGNAFLSHI----RAVDGIYHVVRAF 126 (390)
T ss_pred CcCCcchhHHHHHHHHHH----HHCCEEEEEEeCC
Confidence 865444444555555444 4569999999973
No 253
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.34 E-value=7.9e-12 Score=98.47 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=60.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe----------------EEEEEeCCCCCCCCCC
Q 026970 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ----------------VVNVIDTPGLFDFSAG 85 (230)
Q Consensus 22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~liDtPG~~~~~~~ 85 (230)
|+++|.++||||||+|+|++.... . ...+++|.......+...+.+ .+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~-~-~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE-A-ANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc-c-ccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 589999999999999999998762 2 223556666655544443321 5899999999865544
Q ss_pred cHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (230)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (230)
...+...+...+ ..+|++++|+++.
T Consensus 79 ~~glg~~fL~~i----~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHI----REVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHH----HhCCEEEEEEeCc
Confidence 444555554443 4569999999863
No 254
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.34 E-value=5.1e-12 Score=112.70 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=77.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccc--------------cccCCCCccceeeeeEE----EEeeCCeEEEEEeCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQR----TVLKDGQVVNVIDTPG 78 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~----~~~~~~~~~~liDtPG 78 (230)
...++|+++|+.++|||||+++|+..... .......++|....... .. ..+..+.++||||
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~-~~~~~i~liDTPG 95 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYE-GNEYLINLIDTPG 95 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeec-CCceEEEEEeCCC
Confidence 34589999999999999999999743110 00011133344333221 22 2567899999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+.++. ..+...+..+|++++|+|+.+.....+...+..+.+. ..|.++++||+|...
T Consensus 96 ~~~f~-----------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFG-----------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-----NVKPVLFINKVDRLI 152 (720)
T ss_pred ccccH-----------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence 97643 2223445667999999999877766666665554332 236789999999864
No 255
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.33 E-value=1.1e-11 Score=112.22 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=81.4
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCccceeeeeEEEEee--------------
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK-------------- 66 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~-------------- 66 (230)
....-++|+++|+.++|||||+++|+........ ....++|.......+.+.
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3455689999999999999999999865421110 011234444333333321
Q ss_pred -CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970 67 -DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (230)
Q Consensus 67 -~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 145 (230)
++..+.++||||+.++. ..+......+|++++|+|+.+.+...+...++.+... ..|+++++|
T Consensus 95 ~~~~~inliDtPGh~dF~-----------~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-----~~p~i~~iN 158 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFS-----------SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVN 158 (843)
T ss_pred CCceEEEEECCCCHHHHH-----------HHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-----CCCEEEEEE
Confidence 25678999999986532 2233444567999999999888887777777665553 247899999
Q ss_pred CCCCC
Q 026970 146 GGDEL 150 (230)
Q Consensus 146 k~D~~ 150 (230)
|+|+.
T Consensus 159 K~D~~ 163 (843)
T PLN00116 159 KMDRC 163 (843)
T ss_pred CCccc
Confidence 99997
No 256
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.32 E-value=3.2e-12 Score=89.77 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=96.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
-.++|+++|.--+|||||+-..+...+.....+............+. ...-.+.+|||+|...+ ...-
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-d~ra~L~IWDTAGQErf-----------HALG 79 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-DCRADLHIWDTAGQERF-----------HALG 79 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-cceeeeeeeeccchHhh-----------hccC
Confidence 44899999999999999987776554321111111111111111111 12346889999996432 2333
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCCh---hhHHHHhcccCCchhhhhH
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND---ETLEDYLGRECPKPLKKGA 173 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~---~~~~~~l~~~~~~~l~~~~ 173 (230)
..+|++.+++|+|+|++++-+... +.|...++..+|..+ ..+||.||+|+-+... +..+.|.+.....++...+
T Consensus 80 PIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSA 157 (218)
T KOG0088|consen 80 PIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSA 157 (218)
T ss_pred ceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhhHHHHHHHHHhhchhheeccc
Confidence 467889999999999987766554 678888999888664 6889999999865432 3345566654444444455
Q ss_pred HHHHhHHHHHH
Q 026970 174 TKLRDQQFEVD 184 (230)
Q Consensus 174 ~~~~~~~~~~~ 184 (230)
++-.++.++++
T Consensus 158 k~N~Gi~elFe 168 (218)
T KOG0088|consen 158 KDNVGISELFE 168 (218)
T ss_pred ccccCHHHHHH
Confidence 54445544443
No 257
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.32 E-value=1.7e-11 Score=99.69 Aligned_cols=89 Identities=20% Similarity=0.188 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC----------------eEEEEEeCCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS 83 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~ 83 (230)
.+|+++|.|++|||||+|+|++.... . ...+++|..+....+...+. ..+.++||||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~-v-~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAE-A-ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCe-e-cccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 58999999999999999999998742 1 22355666665544443232 258999999998654
Q ss_pred CCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (230)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (230)
.....+...+...+ ..+|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i----~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANI----REVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHH----HhCCEEEEEEeCC
Confidence 44444454444443 4669999999973
No 258
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.5e-11 Score=84.11 Aligned_cols=122 Identities=19% Similarity=0.175 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-e--CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-K--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.+++++|+.|+|||.|+..+......+ . .+.|....+..-.. . ...++++|||+|. +.++..
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkD--d--ssHTiGveFgSrIinVGgK~vKLQIWDTAGQ-----------ErFRSV 74 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKD--D--SSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ-----------ERFRSV 74 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcc--c--ccceeeeeecceeeeecCcEEEEEEeecccH-----------HHHHHH
Confidence 689999999999999999888665421 1 12233333332111 1 2347899999994 556677
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHH
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE 158 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~ 158 (230)
...+++++.+.++|+|++++-+.+. ..|+.-.+.... ....++++.||.|+-.....+..
T Consensus 75 tRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL~~~R~Vtfl 135 (214)
T KOG0086|consen 75 TRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFL 135 (214)
T ss_pred HHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhcChhhhhhHH
Confidence 7889999999999999986655443 344444444322 23357788899998764444433
No 259
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.30 E-value=2.9e-11 Score=85.53 Aligned_cols=123 Identities=15% Similarity=0.071 Sum_probs=82.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..++++||.+-+|||+|+..++...........-++........+.-....++++|||+|. +.++...+
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagq-----------erfrsitk 76 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-----------ERFRSITK 76 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccch-----------HHHHHHHH
Confidence 4789999999999999999998776633222111111111111121112247899999995 45556667
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
.++++.-++++|+|.+++-+.+. ..|++.-....+.+...-+.+|.+|+|+...
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq 131 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ 131 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh
Confidence 78888889999999987766665 5666666666554444456788999998754
No 260
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.28 E-value=7.5e-11 Score=99.50 Aligned_cols=121 Identities=13% Similarity=0.190 Sum_probs=76.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCccceeeeeEEE---------------EeeC------------
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRT---------------VLKD------------ 67 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~---------------~~~~------------ 67 (230)
.....+|+++|+-.+|||||+.+|+|.....- .....+.|....+... ....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 34558999999999999999999998754211 1122344433332211 0000
Q ss_pred -----CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccceEE
Q 026970 68 -----GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMI 141 (230)
Q Consensus 68 -----~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~i 141 (230)
...+.|+||||+. .+.+.+......+|++++|+++.+. ........+.. ...++. ++++
T Consensus 111 ~~~~~~~~i~~IDtPGH~-----------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i-~~~lgi---~~iI 175 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAA-VEIMKL---KHII 175 (460)
T ss_pred ccccccceEeeeeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHH-HHHcCC---CcEE
Confidence 2478999999963 2333333445577999999999854 34444444433 333453 4789
Q ss_pred EEEeCCCCCC
Q 026970 142 VVFTGGDELE 151 (230)
Q Consensus 142 vv~tk~D~~~ 151 (230)
+|+||+|+.+
T Consensus 176 VvlNKiDlv~ 185 (460)
T PTZ00327 176 ILQNKIDLVK 185 (460)
T ss_pred EEEecccccC
Confidence 9999999875
No 261
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.27 E-value=1.1e-10 Score=95.15 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=81.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCC----cccc----------ccCCCCc---cceeeee---EEEEeeCC----eEE
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGR----RAFK----------SRASSSG---VTSTCEM---QRTVLKDG----QVV 71 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~----~~~~----------~~~~~~~---~t~~~~~---~~~~~~~~----~~~ 71 (230)
.+....|+++|+.++|||||||++++. +..+ ...+..+ .|+++.+ ..+...-. .++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 345589999999999999999999998 3210 0122334 5666555 22222222 589
Q ss_pred EEEeCCCCCCCCCCcHHHHHH--------------HHH-----HHHhhcCCccEEEEEE-eCC------CCCCHHHHHHH
Q 026970 72 NVIDTPGLFDFSAGSEFVGKE--------------IVK-----CIGMAKDGIHAVLVVF-SVR------SRFSQEEEAAL 125 (230)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~--------------~~~-----~~~~~~~~~~~il~v~-d~~------~~~~~~~~~~l 125 (230)
.++||+|+.+.......-... |.. ..+....+++..|+|. |.+ +.....+..++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 999999998755322211111 000 1111222567777777 663 34566677788
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCC
Q 026970 126 HSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 126 ~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..|++. .+|+++|+|+.|-..
T Consensus 174 ~eLk~~-----~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 174 EELKEL-----NKPFIILLNSTHPYH 194 (492)
T ss_pred HHHHhc-----CCCEEEEEECcCCCC
Confidence 888775 348999999999553
No 262
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.2e-10 Score=94.39 Aligned_cols=129 Identities=20% Similarity=0.248 Sum_probs=86.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCcccc-----------------------------ccCCCCccceeeeeEEEEee
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK-----------------------------SRASSSGVTSTCEMQRTVLK 66 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~ 66 (230)
..+..+++++|+..+|||||+-.|+-..... ......+.|.+.....+..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet- 82 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET- 82 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-
Confidence 3456899999999999999998886543200 0112357788777777765
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccce
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDY 139 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~ 139 (230)
+...++++|+||+-+ +..-+......+|+.++|+|+... ....++.. -.|.+.+| ...
T Consensus 83 ~k~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlG---i~~ 147 (428)
T COG5256 83 DKYNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLG---IKQ 147 (428)
T ss_pred CCceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcC---Cce
Confidence 667899999999644 223334555678999999999744 22223332 34556667 347
Q ss_pred EEEEEeCCCCCCCChhhHHHH
Q 026970 140 MIVVFTGGDELEDNDETLEDY 160 (230)
Q Consensus 140 ~ivv~tk~D~~~~~~~~~~~~ 160 (230)
.|+++||+|..+=+...+++.
T Consensus 148 lIVavNKMD~v~wde~rf~ei 168 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEI 168 (428)
T ss_pred EEEEEEcccccccCHHHHHHH
Confidence 999999999986333334443
No 263
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.26 E-value=8.4e-11 Score=98.61 Aligned_cols=122 Identities=17% Similarity=0.233 Sum_probs=86.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCC-CCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
....||+|+|.-|+||||||-+|+.....+..+. .+.++....+. +......++||+.-.+. . .
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvt----Pe~vpt~ivD~ss~~~~----~-------~ 71 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVT----PENVPTSIVDTSSDSDD----R-------L 71 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccC----cCcCceEEEecccccch----h-------H
Confidence 4458999999999999999999998876543322 23333332221 24456889999843321 1 3
Q ss_pred HHHhhcCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
++....+.+|++++++..++. ++.....|+-.+++.+|+....|+|+|.||.|.....
T Consensus 72 ~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 72 CLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNE 131 (625)
T ss_pred HHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccc
Confidence 333445567999999987642 3334588999999999888889999999999988643
No 264
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.24 E-value=1.3e-10 Score=98.22 Aligned_cols=118 Identities=18% Similarity=0.230 Sum_probs=78.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccc---------------------------c--ccCCCCccceeeeeEEEEeeC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAF---------------------------K--SRASSSGVTSTCEMQRTVLKD 67 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~---------------------------~--~~~~~~~~t~~~~~~~~~~~~ 67 (230)
.+..+|+++|+.++|||||+-+|+..... + ......++|....+..+.+ .
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~ 83 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-T 83 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-C
Confidence 44589999999999999999888632210 0 0112346677776666654 6
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-CC------HHHHHHHHHHHHHhcccccceE
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FS------QEEEAALHSLQTLFGKKIFDYM 140 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-~~------~~~~~~l~~l~~~~~~~~~~~~ 140 (230)
++.+.++||||+.+ +...+...+..+|++++|+|+.+. +. ......+..+.. +|. +++
T Consensus 84 ~~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi---~~i 148 (447)
T PLN00043 84 KYYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGV---KQM 148 (447)
T ss_pred CEEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCC---CcE
Confidence 78999999999643 334444556788999999999753 21 223333332222 342 368
Q ss_pred EEEEeCCCCC
Q 026970 141 IVVFTGGDEL 150 (230)
Q Consensus 141 ivv~tk~D~~ 150 (230)
++++||+|+.
T Consensus 149 IV~vNKmD~~ 158 (447)
T PLN00043 149 ICCCNKMDAT 158 (447)
T ss_pred EEEEEcccCC
Confidence 8999999975
No 265
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.24 E-value=1.2e-10 Score=87.78 Aligned_cols=118 Identities=24% Similarity=0.234 Sum_probs=76.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE-EEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR-TVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|.+|+|||+|...+++..+... ...|....+.. ... .....+.|+||+|..++. ..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~----y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~-----------~~ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED----YDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS-----------AM 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc----cCCCccccceEEEEECCEEEEEEEEcCCCcccCh-----------HH
Confidence 47899999999999999988887665221 11232222221 111 123467799999954432 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
...+....|++++|++++++.+.+. ..+.+.+.+.-+. ...|+++|+||+|+...
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERE 123 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhc
Confidence 2345567799999999997777665 3444555343232 23599999999998753
No 266
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.23 E-value=5.7e-11 Score=106.30 Aligned_cols=120 Identities=19% Similarity=0.272 Sum_probs=79.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCccceeeeeEEEEe---eCCeEEEEEeCCC
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVL---KDGQVVNVIDTPG 78 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~---~~~~~~~liDtPG 78 (230)
....++|+++|+.++|||||+.+|+........ ....++|.......+.+ ..+..+.|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 345689999999999999999999754321110 00123444433332222 1356789999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+.++. ..+......+|++++|+|+.......+...+....+. + .|.++++||+|...
T Consensus 97 ~~df~-----------~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~~ 153 (731)
T PRK07560 97 HVDFG-----------GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-R----VKPVLFINKVDRLI 153 (731)
T ss_pred ccChH-----------HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-C----CCeEEEEECchhhc
Confidence 97642 2333444566999999999877777777777664443 3 25789999999863
No 267
>PRK12740 elongation factor G; Reviewed
Probab=99.22 E-value=1.2e-10 Score=103.62 Aligned_cols=112 Identities=23% Similarity=0.301 Sum_probs=74.9
Q ss_pred EcCCCCcHHHHHHHHhCCcccccc----------------CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH
Q 026970 25 VGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (230)
Q Consensus 25 iG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (230)
+|+.++|||||+++|+........ ....++|.......+.+ .+..+.+|||||..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 599999999999999654321110 01235555555555555 7789999999998542
Q ss_pred HHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
... ....+..+|++++|+|++..........+..+... ..|+++|+||+|....+
T Consensus 74 -~~~----~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~~ 128 (668)
T PRK12740 74 -TGE----VERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-----GVPRIIFVNKMDRAGAD 128 (668)
T ss_pred -HHH----HHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCCC
Confidence 112 22334467999999999877766666655554442 24789999999987543
No 268
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.8e-10 Score=96.08 Aligned_cols=130 Identities=21% Similarity=0.275 Sum_probs=92.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCccceeeeeEEEEeeC--CeEEEEEeCCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFD 81 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~ 81 (230)
++-+++.++.+-..|||||..+|+....+... ....++|...+...+.+.+ ...+.+|||||+-|
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 56689999999999999999998755431110 1245788887777666533 26889999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHh
Q 026970 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL 161 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l 161 (230)
++...+ +.+..| +++|+|+|+.+.........+-.-.+ .. -.+|+|+||+|+...+++.++..+
T Consensus 138 Fs~EVs-------Rslaac----~G~lLvVDA~qGvqAQT~anf~lAfe---~~--L~iIpVlNKIDlp~adpe~V~~q~ 201 (650)
T KOG0462|consen 138 FSGEVS-------RSLAAC----DGALLVVDASQGVQAQTVANFYLAFE---AG--LAIIPVLNKIDLPSADPERVENQL 201 (650)
T ss_pred ccceeh-------ehhhhc----CceEEEEEcCcCchHHHHHHHHHHHH---cC--CeEEEeeeccCCCCCCHHHHHHHH
Confidence 885544 444444 89999999988877665443332222 11 269999999999887776666555
Q ss_pred c
Q 026970 162 G 162 (230)
Q Consensus 162 ~ 162 (230)
.
T Consensus 202 ~ 202 (650)
T KOG0462|consen 202 F 202 (650)
T ss_pred H
Confidence 4
No 269
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.2e-10 Score=102.11 Aligned_cols=120 Identities=21% Similarity=0.274 Sum_probs=90.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCccceeeeeEEEEeeC-CeEEEEEeCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGL 79 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~ 79 (230)
...++|+++|+..+|||||..+|+........ ....++|.........| . +..+++|||||+
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCCc
Confidence 45589999999999999999998754432111 11346777777777776 5 489999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
-|+.. ++.+++ +-.|++++|+|+.+.........++...+. ..|.++++||+|.+..+
T Consensus 87 VDFt~-------EV~rsl----rvlDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VDFTI-------EVERSL----RVLDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLGAD 144 (697)
T ss_pred cccHH-------HHHHHH----HhhcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECccccccC
Confidence 98752 233444 344899999999888888888888777765 24899999999998654
No 270
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.20 E-value=4.9e-11 Score=93.63 Aligned_cols=90 Identities=19% Similarity=0.305 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
-+++|+|.|++|||||+|.|++... .....+.|+-.....+..+++-.++++|+||+....+.......++. .
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vl----s 136 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVL----S 136 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceee----e
Confidence 6999999999999999999999873 33333334433444444458999999999999875544332223222 3
Q ss_pred hcCCccEEEEEEeCCCC
Q 026970 100 AKDGIHAVLVVFSVRSR 116 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~ 116 (230)
..+.+|++++|+|+...
T Consensus 137 v~R~ADlIiiVld~~~~ 153 (365)
T COG1163 137 VARNADLIIIVLDVFED 153 (365)
T ss_pred eeccCCEEEEEEecCCC
Confidence 34677999999999743
No 271
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.19 E-value=2.4e-10 Score=94.94 Aligned_cols=89 Identities=20% Similarity=0.101 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe--------------------e---CCeEEEEEeC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------K---DGQVVNVIDT 76 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~---~~~~~~liDt 76 (230)
.+|+++|.+++|||||+|+|++..... ...+.+|..+....... . ....+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~--~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEI--ANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccc--cCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 589999999999999999999886422 22344454444432211 1 1246889999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (230)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (230)
||+.........+...+... ...+|++++|+|+.
T Consensus 80 aGl~~ga~~g~glg~~fL~~----ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDD----LRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHH----HHHCCEEEEEEeCC
Confidence 99976443333444444444 45569999999985
No 272
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.19 E-value=1.6e-09 Score=83.54 Aligned_cols=94 Identities=18% Similarity=0.105 Sum_probs=60.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC-ccccccCCCCccceeeeeEEEEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR-RAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
+...|+++|++++|||||+|.|+|. ..|........+|........... .+..+.++||||+.+...........+
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~- 84 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL- 84 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH-
Confidence 4478999999999999999999998 345554444566666555544332 357899999999998665431111111
Q ss_pred HHHHhhcCCccEEEEEEeCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVR 114 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~ 114 (230)
-++... -.+++||.++..
T Consensus 85 ~~l~~l--lss~~i~n~~~~ 102 (224)
T cd01851 85 FALATL--LSSVLIYNSWET 102 (224)
T ss_pred HHHHHH--HhCEEEEeccCc
Confidence 111111 236778777664
No 273
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.17 E-value=2.8e-10 Score=91.87 Aligned_cols=87 Identities=21% Similarity=0.148 Sum_probs=55.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-----------------------eCCeEEEEEeCCC
Q 026970 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------------KDGQVVNVIDTPG 78 (230)
Q Consensus 22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------------~~~~~~~liDtPG 78 (230)
|+++|.+++|||||+|+|++.... . ...+.+|..+....... .....+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~-~-~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVE-I-ANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCc-c-cCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 589999999999999999987642 1 12233444444322211 0224789999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (230)
+.........+...+.. .++.+|++++|+|+.
T Consensus 79 lv~ga~~~~glg~~fL~----~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLD----DLRDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHH----HHHHCCEEEEEEeCC
Confidence 96533222333344433 345669999999986
No 274
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.17 E-value=8.1e-11 Score=85.93 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=41.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (230)
...+|+++|.+|+|||||+|+|++......+. .+++|....... .+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYIT----LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEE----cCCCEEEEECcCC
Confidence 34789999999999999999999977644433 344555544432 2345889999995
No 275
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.16 E-value=3.4e-10 Score=92.77 Aligned_cols=119 Identities=20% Similarity=0.319 Sum_probs=86.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccc-cc-----------c--CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAF-KS-----------R--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~-~~-----------~--~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (230)
-++|+++.+-..|||||+..|+.+... .. . ....++|.-..-..+.+ ++.++.++||||+.|+.+
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGG 83 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGG 83 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccc
Confidence 379999999999999999999876531 00 0 12356777666666665 889999999999999886
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCCh
Q 026970 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 154 (230)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (230)
..+ +. ..-+|++++++|+.+..-+..+..++.-.+. | -+.|+|+||+|....++
T Consensus 84 EVE-------Rv----l~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~-g----L~PIVVvNKiDrp~Arp 137 (603)
T COG1217 84 EVE-------RV----LSMVDGVLLLVDASEGPMPQTRFVLKKALAL-G----LKPIVVINKIDRPDARP 137 (603)
T ss_pred hhh-------hh----hhhcceEEEEEEcccCCCCchhhhHHHHHHc-C----CCcEEEEeCCCCCCCCH
Confidence 655 22 2345899999999877776766555443332 2 15789999999986553
No 276
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.3e-09 Score=85.74 Aligned_cols=134 Identities=18% Similarity=0.273 Sum_probs=83.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEE---------------------------------
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT--------------------------------- 63 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------------------- 63 (230)
...+-|+++|+...||||||+.|+..+++.....+.++|-.....-.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 34578999999999999999999998875333222222211111100
Q ss_pred ----EeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccc
Q 026970 64 ----VLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKI 136 (230)
Q Consensus 64 ----~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~ 136 (230)
...+. ..+.+|||||+.+.....-...-.+...+.....++|.|++++|+. -.++.+....+..++..
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----- 210 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----- 210 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC-----
Confidence 00000 1489999999986332111112235566677778899999999986 12444445565555442
Q ss_pred cceEEEEEeCCCCCCCChhhH
Q 026970 137 FDYMIVVFTGGDELEDNDETL 157 (230)
Q Consensus 137 ~~~~ivv~tk~D~~~~~~~~~ 157 (230)
...+=||+||+|..+ .+++
T Consensus 211 EdkiRVVLNKADqVd--tqqL 229 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVD--TQQL 229 (532)
T ss_pred cceeEEEeccccccC--HHHH
Confidence 236889999999987 4443
No 277
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.14 E-value=3.7e-11 Score=86.78 Aligned_cols=62 Identities=31% Similarity=0.368 Sum_probs=37.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccc----C--CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR----A--SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~----~--~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~ 85 (230)
..++|+|++|||||||||.|++.....++ . ....+|.....+.. .....||||||+.++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l----~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL----PDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE----TTSEEEECSHHHHT--GC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec----CCCcEEEECCCCCccccc
Confidence 79999999999999999999998543321 1 12233444444433 224579999999876544
No 278
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.14 E-value=6e-10 Score=85.80 Aligned_cols=127 Identities=18% Similarity=0.203 Sum_probs=81.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH--HHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKE 92 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~ 92 (230)
....++++++|.+++|||||||.++...... ......+-|...+.+. -+..++++|.||++......+ .-+..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence 4566899999999999999999998765422 2222444455544442 467899999999654322111 11222
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+......-....-.+++++|++-.+...|...+.++-+. ..|..+|+||||+..
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQK 262 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc-----CCCeEEeeehhhhhh
Confidence 322222111222345666777767777788888877764 348999999999875
No 279
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.11 E-value=2.3e-10 Score=84.51 Aligned_cols=56 Identities=34% Similarity=0.430 Sum_probs=42.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (230)
..+++++|.+|+|||||+|+|++......+. .+++|...+.... +..+.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~~----~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVHL----DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEEe----CCCEEEEECcCC
Confidence 4799999999999999999999987655543 4566665544432 346889999995
No 280
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=3.9e-10 Score=86.79 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=76.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCC--CccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHH------
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS--SGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEF------ 88 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~------ 88 (230)
=..+|+.+|.+|.|||||+.+|++...-...... +.+......+..... -...++++||.|++|.....+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 3479999999999999999999987753222111 111111122211111 1237899999999974432211
Q ss_pred -HHHHHHHH----------HH-hhcCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 89 -VGKEIVKC----------IG-MAKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 89 -~~~~~~~~----------~~-~~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+-.++..+ +. ....++|++||+|.++ ..+...+.-.++.+... .++|.|+.|+|...
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtis 190 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhh
Confidence 11111111 11 1125789999999885 34555555555555443 36899999999876
No 281
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.10 E-value=3.1e-10 Score=84.20 Aligned_cols=115 Identities=21% Similarity=0.145 Sum_probs=79.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
..+++++|..++|||+++-..+...+ +... ..|....+. .+...++. .+.+|||.|..+.+ +
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~f-p~~y---vPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD-----------r 68 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAF-PEEY---VPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD-----------R 68 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcC-cccc---cCeEEccceEEEEecCCCEEEEeeeecCCCcccc-----------c
Confidence 37899999999999999988775533 2221 123322222 23321243 57899999987653 1
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.-..+++.+|+||+++++.++.+.+ ..+|+..++..+. ..|+++|++|.|+..
T Consensus 69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp---~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP---NVPIILVGTKADLRD 123 (198)
T ss_pred ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC---CCCEEEEeehHHhhh
Confidence 1125889999999999998665555 3778888887763 348999999999884
No 282
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.9e-09 Score=74.52 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE--EEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR--TVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
..+.+++|.-|+|||.|+..++...+.. ..+.|....+.. +.. ....++.+|||.|. ++++.
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfma----dcphtigvefgtriievsgqkiklqiwdtagq-----------erfra 75 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMA----DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ-----------ERFRA 75 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhh----cCCcccceecceeEEEecCcEEEEEEeecccH-----------HHHHH
Confidence 4788999999999999999988665421 222233333321 111 13357899999994 45667
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHH
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE 158 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~ 158 (230)
....+++++.+.++|+|++.+.+-.. ..|+..-+.+- +....++++.||.|+-...+...+
T Consensus 76 vtrsyyrgaagalmvyditrrstynhlsswl~dar~lt--npnt~i~lignkadle~qrdv~ye 137 (215)
T KOG0097|consen 76 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLESQRDVTYE 137 (215)
T ss_pred HHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC--CCceEEEEecchhhhhhcccCcHH
Confidence 77788999999999999985554433 33443333321 223357788899998654444433
No 283
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=6.5e-09 Score=71.89 Aligned_cols=126 Identities=15% Similarity=0.197 Sum_probs=84.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+.+|-.++||||++-.|.-.... ....|....+..+.+ .+..+.++|.-|. ..++...
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-----~~ipTvGFnvetVty-kN~kfNvwdvGGq-----------d~iRplW 78 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGFNVETVTY-KNVKFNVWDVGGQ-----------DKIRPLW 78 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc-----ccccccceeEEEEEe-eeeEEeeeeccCc-----------hhhhHHH
Confidence 4579999999999999999888644321 112233344444444 6678999998884 3456777
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-c-cceEEEEEeCCCCCCCC-hhhHHHHhc
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK-I-FDYMIVVFTGGDELEDN-DETLEDYLG 162 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~-~-~~~~ivv~tk~D~~~~~-~~~~~~~l~ 162 (230)
..++++..++|||+|..++ ......-..+.+..+.+ + ..++++..||.|+.... ++.+.++++
T Consensus 79 rhYy~gtqglIFV~Dsa~~--dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le 144 (180)
T KOG0071|consen 79 RHYYTGTQGLIFVVDSADR--DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE 144 (180)
T ss_pred HhhccCCceEEEEEeccch--hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc
Confidence 7889999999999998644 22233444555555533 2 23677888999987532 566777765
No 284
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.08 E-value=9.6e-10 Score=76.03 Aligned_cols=120 Identities=16% Similarity=0.114 Sum_probs=79.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
+++....+|+++|--++|||||++.|.+.++... ..|.......+.......+.+||..|.- .+
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hl-----tpT~GFn~k~v~~~g~f~LnvwDiGGqr-----------~I 75 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHL-----TPTNGFNTKKVEYDGTFHLNVWDIGGQR-----------GI 75 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChhhc-----cccCCcceEEEeecCcEEEEEEecCCcc-----------cc
Confidence 4456679999999999999999999998875332 2233333344444344789999988853 34
Q ss_pred HHHHHhhcCCccEEEEEEeCCCC-CCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSR-FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+-..+.+|..+|.+|||+|.++. ...+. ..+.+.+.+ .+....|+.+-.||.|++.
T Consensus 76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELlee--eKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEE--EKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhh--hhhhccceeehhhhhHHHh
Confidence 45666788899999999997533 22222 222222222 1223447888889999886
No 285
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=3.6e-09 Score=78.46 Aligned_cols=119 Identities=15% Similarity=0.198 Sum_probs=73.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
+..|+++|.+++|||+|+-.|.-.... ..-+.+......+.. +...+.+||.||+.. +..++...+.
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~-----~TvtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~ 104 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHR-----GTVTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLK 104 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCcc-----CeeeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHcc
Confidence 378999999999999999887654221 111122333333333 344579999999752 3344444443
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccceEEEEEeCCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivv~tk~D~~~~ 152 (230)
.. ..+-+++||+|.. -+...-+...+++...+- ..-..|++++.||.|++..
T Consensus 105 ~~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 105 HN-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred cc-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 32 2567899999986 444444444444443332 2334589999999999864
No 286
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.05 E-value=1.1e-09 Score=86.15 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=86.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
+.+.|.++|.|++||||||++|++....+. ..-..|.++.......+.|..+.+.||-||...- ...+...|...+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~--drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdL--P~~LvaAF~ATL 252 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPN--DRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDL--PIQLVAAFQATL 252 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCcc--chhheeccchhhhccCCCCcEEEEeechhhhhhC--cHHHHHHHHHHH
Confidence 347999999999999999999997766433 2334466666665666788999999999997421 222333333333
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK---IFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ivv~tk~D~~~ 151 (230)
... ..+|.++.|+|++.+.-...........+..|-+ ....++=|=||.|.-+
T Consensus 253 eeV-aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 253 EEV-AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHH-hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 322 3568999999998665555444443333334532 3446777889998765
No 287
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.04 E-value=7.8e-10 Score=79.22 Aligned_cols=57 Identities=26% Similarity=0.386 Sum_probs=40.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (230)
.+++++|.+|+|||||+|+|++....... ...+.|.......+ + ..+.++||||+..
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~---~-~~~~i~DtpG~~~ 140 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFL---T-PTITLCDCPGLVF 140 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEe---C-CCEEEEECCCcCC
Confidence 48999999999999999999988764332 23344554443322 2 3679999999863
No 288
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.04 E-value=1.5e-09 Score=86.83 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=49.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (230)
...+++++|.+|+|||||+|+|++.....++. .+++|...+.... +..+.++||||+..+....++
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~----~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIKL----GKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEEe----CCcEEEEECCCcCCCCCCcHH
Confidence 45799999999999999999999987644432 4566766654322 346889999999877655443
No 289
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.3e-09 Score=76.97 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=80.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
...+..+|+++|--+|||||++..|--...... .+|.......+.+ .+..+.+||.-|... ++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~R 75 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQEK-----------LR 75 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCcc-----------cc
Confidence 345668999999999999999988865544322 3355555555554 678999999988643 22
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~ 151 (230)
.....++...+++|||+|.+++..-. ..-+.+.+.+... ...|+++..||.|...
T Consensus 76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~--eak~eL~~~l~~~~l~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 76 PLWKHYFQNTQGLIFVVDSSDRERIE--EAKEELHRMLAEPELRNAPLLVFANKQDLPG 132 (181)
T ss_pred cchhhhccCCcEEEEEEeCCcHHHHH--HHHHHHHHHHcCcccCCceEEEEechhhccc
Confidence 44557778889999999997543222 2333334433322 3458999999999875
No 290
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.2e-09 Score=90.77 Aligned_cols=131 Identities=21% Similarity=0.246 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCC-----------------------------------------ccceee
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----------------------------------------GVTSTC 58 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~-----------------------------------------~~t~~~ 58 (230)
-+|++.|.+++||||++|+++.....+.+..+. ......
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~ 189 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG 189 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcc
Confidence 689999999999999999998776533322110 000011
Q ss_pred eeEEEEeeCC------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 026970 59 EMQRTVLKDG------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF 132 (230)
Q Consensus 59 ~~~~~~~~~~------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~ 132 (230)
....+.++++ ..+.++|.||+.-. .+....+..+...+|+++||+++.+.++....+++....+.
T Consensus 190 sLlrV~~p~~~csLLrnDivliDsPGld~~--------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~- 260 (749)
T KOG0448|consen 190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE- 260 (749)
T ss_pred eEEEEEecCccchhhhccceeccCCCCCCc--------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-
Confidence 1112333333 25899999998742 22224444555678999999999878887776666555443
Q ss_pred cccccceEEEEEeCCCCCCCChhhHHHHhcc
Q 026970 133 GKKIFDYMIVVFTGGDELEDNDETLEDYLGR 163 (230)
Q Consensus 133 ~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~ 163 (230)
.++++|+.||||...+.++-.+..+++
T Consensus 261 ----KpniFIlnnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 261 ----KPNIFILNNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred ----CCcEEEEechhhhhcccHHHHHHHHHH
Confidence 457999999999987555555555543
No 291
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.03 E-value=3.4e-10 Score=76.67 Aligned_cols=115 Identities=22% Similarity=0.255 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
++++++|+.|+|||||.++|-|...... -|....+. +. ..|||||-+-. .....+++..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk------KTQAve~~-----d~---~~IDTPGEy~~-------~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK------KTQAVEFN-----DK---GDIDTPGEYFE-------HPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc------ccceeecc-----Cc---cccCCchhhhh-------hhHHHHHHHH
Confidence 5899999999999999999998764211 12222221 11 26999996531 2334455556
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC-ChhhHHHHhcc
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLGR 163 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~~ 163 (230)
....++++++|..++++-+.-... |-....+++|-|+||.|+.++ +-+....+|..
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~--------f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~e 117 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPG--------FLDIGVKKVIGVVTKADLAEDADISLVKRWLRE 117 (148)
T ss_pred HhhccceeeeeecccCccccCCcc--------cccccccceEEEEecccccchHhHHHHHHHHHH
Confidence 666789999999887442211111 122223469999999999852 22233444443
No 292
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.02 E-value=8.6e-10 Score=76.76 Aligned_cols=115 Identities=20% Similarity=0.124 Sum_probs=75.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
...+.++|--++|||||+|.++...+ . .....|.....+.+.. ....+.++|.||...+ .....
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~--~--edmiptvGfnmrk~tk-gnvtiklwD~gGq~rf-----------rsmWe 83 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQY--L--EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQPRF-----------RSMWE 83 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccc--h--hhhcccccceeEEecc-CceEEEEEecCCCccH-----------HHHHH
Confidence 46889999999999999999876443 1 1222344444444442 4568889999997543 24445
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~ 151 (230)
.+.+++++++||+|+.++-.- ...-..++.++.++ ...|++++.||.|+..
T Consensus 84 rycR~v~aivY~VDaad~~k~--~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKL--EASRSELHDLLDKPSLTGIPLLVLGNKIDLPG 136 (186)
T ss_pred HHhhcCcEEEEEeecCCcccc--hhhHHHHHHHhcchhhcCCcEEEecccccCcc
Confidence 677899999999998643111 11112333333333 2358999999999875
No 293
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.01 E-value=4.7e-10 Score=84.52 Aligned_cols=57 Identities=30% Similarity=0.335 Sum_probs=40.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcccc-------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFK-------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (230)
..+++++|.+|+|||||||+|++..... .....+++|.......+ +..+.|+||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 4689999999999999999999865321 11223455666554433 225789999996
No 294
>PRK13768 GTPase; Provisional
Probab=99.00 E-value=3.4e-09 Score=83.27 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=48.8
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (230)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 149 (230)
.+.++||||..+.... ......+.+.+.... ++++++|+|+....+..+.....++..........|+++|+||+|.
T Consensus 98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 6899999997653211 223344444444322 6899999999755556554444433321111224589999999999
Q ss_pred CC
Q 026970 150 LE 151 (230)
Q Consensus 150 ~~ 151 (230)
..
T Consensus 175 ~~ 176 (253)
T PRK13768 175 LS 176 (253)
T ss_pred cC
Confidence 86
No 295
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=7.6e-10 Score=79.59 Aligned_cols=118 Identities=18% Similarity=0.077 Sum_probs=76.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
...+++++|.-++||||+|.+.+..-+ ..+. ...+..+.....+.. ..+.++.+|||.|..+ +...
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgif-Tkdy-kktIgvdflerqi~v~~Edvr~mlWdtagqeE-----------fDaI 85 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIF-TKDY-KKTIGVDFLERQIKVLIEDVRSMLWDTAGQEE-----------FDAI 85 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccc-cccc-ccccchhhhhHHHHhhHHHHHHHHHHhccchh-----------HHHH
Confidence 347899999999999999999984432 2211 111111111111111 1234567899999644 3345
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+.+++++.+.++|++-+++.+.+. ..|.+.+....+ ..|.++|-||+|+++
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~---~IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE---RIPTVFVQNKIDLVE 138 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc---cCCeEEeeccchhhH
Confidence 5678899999999999987766554 445555555444 358999999999986
No 296
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.99 E-value=1.3e-09 Score=79.42 Aligned_cols=57 Identities=26% Similarity=0.419 Sum_probs=41.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (230)
...+++++|.+|+|||||+|+|++......+. ..++|........ +..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~~~~----~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQEVKL----DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEEEEe----cCCEEEEECCCC
Confidence 45899999999999999999999976533322 3445555544322 356899999996
No 297
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.5e-08 Score=80.42 Aligned_cols=119 Identities=17% Similarity=0.284 Sum_probs=75.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc---ccccc--CCCCccceeeeeEEEEeeCCe--------EEEEEeCCCCCCCCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR---AFKSR--ASSSGVTSTCEMQRTVLKDGQ--------VVNVIDTPGLFDFSA 84 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~---~~~~~--~~~~~~t~~~~~~~~~~~~~~--------~~~liDtPG~~~~~~ 84 (230)
...+++++|+-.+|||||.++|.... .|+.. ....++|.+..+.......+. .++++|+||+..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas--- 82 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS--- 82 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---
Confidence 34899999999999999999985332 22222 224566666666554433222 569999999742
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
+.+.+.....-.|..++|+|+.........+.+-. |...-++.++|+||+|.+.+
T Consensus 83 --------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii-----g~~~c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 83 --------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII-----GELLCKKLVVVINKIDVLPE 137 (522)
T ss_pred --------HHHHHHhhhheeeeeeEEEehhcccccccchhhhh-----hhhhccceEEEEeccccccc
Confidence 22333233344588999999975555444333321 22222368899999998863
No 298
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.99 E-value=2.6e-09 Score=84.14 Aligned_cols=63 Identities=27% Similarity=0.321 Sum_probs=42.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcccccc----C--CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR----A--SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~----~--~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (230)
.....+++|++|||||||+|+|.+.....++ . ....+|+....+.+.. . -.|+|||||..+..
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-g---G~iiDTPGf~~~~l 231 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-G---GWIIDTPGFRSLGL 231 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-C---CEEEeCCCCCccCc
Confidence 3468899999999999999999985432221 1 2233455555554431 2 36999999987654
No 299
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.99 E-value=3.1e-09 Score=84.66 Aligned_cols=65 Identities=23% Similarity=0.310 Sum_probs=47.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE 87 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~ 87 (230)
...+++++|.+|+|||||+|+|++.....++. .+++|...+.... +..+.++||||+..+.....
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~----~~~~~l~DtPG~~~~~~~~~ 181 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQWIKL----SDGLELLDTPGILWPKFEDQ 181 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEEEEe----CCCEEEEECCCcccCCCCch
Confidence 45789999999999999999999877544432 4455665544332 34679999999976654443
No 300
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.98 E-value=1.3e-07 Score=78.86 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=71.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCccccccCCC-C-c-------cc--eeeeeEEEEe---------------
Q 026970 18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASS-S-G-------VT--STCEMQRTVL--------------- 65 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~------~~~~~~~~~~~-~-~-------~t--~~~~~~~~~~--------------- 65 (230)
.+..|+++|.+|+||||++..|. |..+....... . + .. ....++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35789999999999999999886 43321111110 0 0 00 0011111000
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970 66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (230)
Q Consensus 66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~ 144 (230)
..+..++||||||... .......++....... .++.+++|+|+... .......+.+.+.. .+.-+|+
T Consensus 179 ~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~~--~p~e~lLVlda~~G--q~a~~~a~~F~~~~-----~~~g~Il 246 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEAI--QPDNIIFVMDGSIG--QAAEAQAKAFKDSV-----DVGSVII 246 (429)
T ss_pred HhCCCCEEEEECCCCCc---chHHHHHHHHHHhhhc--CCcEEEEEeccccC--hhHHHHHHHHHhcc-----CCcEEEE
Confidence 0246889999999754 2344556666554333 56889999998633 33344445554433 3688999
Q ss_pred eCCCCCC
Q 026970 145 TGGDELE 151 (230)
Q Consensus 145 tk~D~~~ 151 (230)
||.|...
T Consensus 247 TKlD~~a 253 (429)
T TIGR01425 247 TKLDGHA 253 (429)
T ss_pred ECccCCC
Confidence 9999864
No 301
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=9.8e-09 Score=84.03 Aligned_cols=124 Identities=20% Similarity=0.305 Sum_probs=93.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
.|+..|+-..|||||+.+++|...-. ......++|.+..++.... .+..+.|+|.||+.+ +.+.+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence 57889999999999999999876421 2234678899999998876 445899999999853 2233334
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~ 162 (230)
....+|..++|+++++.+...+.+.+..+.- +|. .+.++|+||+|..+ ...+++.++
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi---~~giivltk~D~~d--~~r~e~~i~ 126 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGI---KNGIIVLTKADRVD--EARIEQKIK 126 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCC---CceEEEEecccccc--HHHHHHHHH
Confidence 5567799999999988999888877766554 574 37899999999987 445555444
No 302
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.97 E-value=9.3e-09 Score=79.24 Aligned_cols=79 Identities=22% Similarity=0.094 Sum_probs=41.4
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc-ccccceEEEEEeCC
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG-KKIFDYMIVVFTGG 147 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~-~~~~~~~ivv~tk~ 147 (230)
..+++|||||..+.- ....-..-|...+... .+.+++||+|.. +.+......-.++....- -...-|+++|+||+
T Consensus 116 ~~~~liDTPGQIE~F-tWSAsGsIIte~lass--~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~ 191 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAF-TWSASGSIITETLASS--FPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYKTKLPFIVVFNKT 191 (366)
T ss_pred cCEEEEcCCCceEEE-EecCCccchHhhHhhc--CCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHhccCCeEEEEecc
Confidence 358999999987421 0000112233444444 346789999875 333222111111111100 11234899999999
Q ss_pred CCCC
Q 026970 148 DELE 151 (230)
Q Consensus 148 D~~~ 151 (230)
|..+
T Consensus 192 Dv~d 195 (366)
T KOG1532|consen 192 DVSD 195 (366)
T ss_pred cccc
Confidence 9876
No 303
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.96 E-value=1.1e-08 Score=81.35 Aligned_cols=128 Identities=15% Similarity=0.205 Sum_probs=89.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccc-----------cc---c-----------------CCCCccceeeeeEEEEe
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAF-----------KS---R-----------------ASSSGVTSTCEMQRTVL 65 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~-----------~~---~-----------------~~~~~~t~~~~~~~~~~ 65 (230)
...++++-+|.-.-||||||-.|+..... .+ + ....++|++..+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 45589999999999999999988754320 00 0 11248888888776665
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (230)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 145 (230)
..+++.+.||||+. ++.+-+......+|+.++++|+...+-...+. -..+..++|- +++++.+|
T Consensus 84 -~KRkFIiADTPGHe-----------QYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGI---rhvvvAVN 147 (431)
T COG2895 84 -EKRKFIIADTPGHE-----------QYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGI---RHVVVAVN 147 (431)
T ss_pred -ccceEEEecCCcHH-----------HHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCC---cEEEEEEe
Confidence 77899999999974 33344445556779999999997555444432 2345666673 48999999
Q ss_pred CCCCCCCChhhHHHH
Q 026970 146 GGDELEDNDETLEDY 160 (230)
Q Consensus 146 k~D~~~~~~~~~~~~ 160 (230)
|+|+..=+.+.++++
T Consensus 148 KmDLvdy~e~~F~~I 162 (431)
T COG2895 148 KMDLVDYSEEVFEAI 162 (431)
T ss_pred eecccccCHHHHHHH
Confidence 999986444444443
No 304
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.96 E-value=2.4e-09 Score=79.22 Aligned_cols=59 Identities=25% Similarity=0.387 Sum_probs=42.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (230)
+..++++++|.+|+|||||+|.|++....... ...++|.......+ ...+.++||||+.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~----~~~~~~iDtpG~~ 171 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKI----SPGIYLLDTPGIL 171 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEe----cCCEEEEECCCCC
Confidence 34579999999999999999999987653232 23345555544433 1568899999973
No 305
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.96 E-value=3.8e-08 Score=82.55 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCC----------------------------------------------
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---------------------------------------------- 51 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~---------------------------------------------- 51 (230)
.-++|+++|.-.+||||.+..+....+|+-+...
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 3489999999999999999999877665433211
Q ss_pred ------CccceeeeeEEEEe--eCCeEEEEEeCCCCCCCCC--CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH
Q 026970 52 ------SGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE 121 (230)
Q Consensus 52 ------~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~ 121 (230)
.+.|.......... ++=.+.+++|.||+..+.. ...+....|...-+.+..++++||+|+.-. ..+.+-
T Consensus 387 Mr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAER 465 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAER 465 (980)
T ss_pred HHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccchhh
Confidence 14444444433332 1224789999999987543 233455666666677788999999999654 444444
Q ss_pred HHHHHHHHHHhcccccceEEEEEeCCCCCCCC---hhhHHHHhc
Q 026970 122 EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLG 162 (230)
Q Consensus 122 ~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~---~~~~~~~l~ 162 (230)
....+.+... .+.-..+|+|+||.|+.+.+ +..+..+++
T Consensus 466 SnVTDLVsq~--DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 466 SIVTDLVSQM--DPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred hhHHHHHHhc--CCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 4444444443 33446799999999988652 556666666
No 306
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.95 E-value=2.8e-08 Score=69.81 Aligned_cols=122 Identities=19% Similarity=0.091 Sum_probs=75.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE 92 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~ 92 (230)
.+..-+|+++|.-++|||+++..|+-.+.... .....|+...+. .+....+ ..+.+.||.|+.+.. . +
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~--~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~---~----e 76 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPG--TELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ---Q----E 76 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCC--CccccchhhheeEeeecCCChhheEEEeecccccCch---h----h
Confidence 35567999999999999999988875543211 122234433332 2332222 378999999998642 1 1
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh---cccccceEEEEEeCCCCCCC
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF---GKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~---~~~~~~~~ivv~tk~D~~~~ 152 (230)
.-..++.-+|++++|++..+. +..+.++.|++.. ......|++++.|++|+.++
T Consensus 77 ---Lprhy~q~aDafVLVYs~~d~---eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 77 ---LPRHYFQFADAFVLVYSPMDP---ESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred ---hhHhHhccCceEEEEecCCCH---HHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 112344456999999987643 3333444443332 33344589999999999753
No 307
>PRK12288 GTPase RsgA; Reviewed
Probab=98.93 E-value=5.4e-09 Score=85.43 Aligned_cols=61 Identities=26% Similarity=0.440 Sum_probs=41.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (230)
..++|+|.+|||||||||+|++.....++.- ...+|.....+.+. .+ ..|+||||+..+..
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~~l 272 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREFGL 272 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCcccC
Confidence 3589999999999999999998865433211 12245555555442 22 25999999987654
No 308
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=7.7e-09 Score=86.94 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=77.7
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccc-cCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE 92 (230)
Q Consensus 14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (230)
...+++..++++|++|+||||||++|...-.... ....+++|. .....++++|+.+|. + ...
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv-------vsgK~RRiTflEcp~--D--------l~~ 126 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV-------VSGKTRRITFLECPS--D--------LHQ 126 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE-------eecceeEEEEEeChH--H--------HHH
Confidence 3445668888999999999999999975432111 111122222 123567899999994 2 122
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+.. ...-+|.+|+++|....+..+...++..+... |. +.++-|+||.|++.
T Consensus 127 miD----vaKIaDLVlLlIdgnfGfEMETmEFLnil~~H-Gm---PrvlgV~ThlDlfk 177 (1077)
T COG5192 127 MID----VAKIADLVLLLIDGNFGFEMETMEFLNILISH-GM---PRVLGVVTHLDLFK 177 (1077)
T ss_pred HHh----HHHhhheeEEEeccccCceehHHHHHHHHhhc-CC---CceEEEEeeccccc
Confidence 222 33445899999999888888888888777664 53 47999999999997
No 309
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=8.7e-09 Score=84.14 Aligned_cols=123 Identities=15% Similarity=0.220 Sum_probs=85.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh--CCcccccc------------------CCCCccceeeeeEEEEeeCCeEEEEEeC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSIL--GRRAFKSR------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~--~~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (230)
...++.++|-+|.+|||||-..|+ |..+...+ ....++.....+-.+.+ ++..+.++||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDT 88 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDT 88 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCC
Confidence 345789999999999999987764 22211000 01235555555555664 7889999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhh
Q 026970 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET 156 (230)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~ 156 (230)
||+.|++.+.. ..+.-+|..++|+|+-..+.....++++..+-. + .|++-.+||+|.-..++-.
T Consensus 89 PGHeDFSEDTY-----------RtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR-~----iPI~TFiNKlDR~~rdP~E 152 (528)
T COG4108 89 PGHEDFSEDTY-----------RTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR-D----IPIFTFINKLDREGRDPLE 152 (528)
T ss_pred CCccccchhHH-----------HHHHhhheeeEEEecccCccHHHHHHHHHHhhc-C----CceEEEeeccccccCChHH
Confidence 99999874333 222345899999999778988888887765543 2 4899999999987655443
No 310
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.92 E-value=3.6e-09 Score=79.76 Aligned_cols=75 Identities=24% Similarity=0.182 Sum_probs=47.2
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 147 (230)
+..+.+|||||.... ......++.+.+... .++-+++|++++.. ..+........+.++ ..-+++||.
T Consensus 83 ~~D~vlIDT~Gr~~~---d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-----~~~lIlTKl 150 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPR---DEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAFG-----IDGLILTKL 150 (196)
T ss_dssp TSSEEEEEE-SSSST---HHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-----TCEEEEEST
T ss_pred CCCEEEEecCCcchh---hHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhccc-----CceEEEEee
Confidence 356899999998642 344556666665554 56789999999733 333334444444443 456889999
Q ss_pred CCCCCCh
Q 026970 148 DELEDND 154 (230)
Q Consensus 148 D~~~~~~ 154 (230)
|....-+
T Consensus 151 Det~~~G 157 (196)
T PF00448_consen 151 DETARLG 157 (196)
T ss_dssp TSSSTTH
T ss_pred cCCCCcc
Confidence 9976433
No 311
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.91 E-value=5.8e-10 Score=76.33 Aligned_cols=115 Identities=13% Similarity=0.131 Sum_probs=74.7
Q ss_pred EEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc
Q 026970 23 VLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (230)
Q Consensus 23 ~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (230)
+++|.+++|||.|+-.+-...+.. .-.+.-++.......... ....++++|||.|.. .++.....++
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~-~~kvklqiwdtagqe-----------rfrsvt~ayy 68 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMD-DKKVKLQIWDTAGQE-----------RFRSVTHAYY 68 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccC-CcEEEEEEeeccchH-----------HHhhhhHhhh
Confidence 378999999998764432221111 011222222222332221 123578999999953 4456666788
Q ss_pred CCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 102 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 102 ~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+.+|++++++|+.++.+.+. ..|+..++++.... ..++++.||+|...
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAH 117 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccch
Confidence 99999999999987877766 77888888864322 35889999999865
No 312
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=2.2e-08 Score=84.42 Aligned_cols=122 Identities=19% Similarity=0.235 Sum_probs=82.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccc-----------------------------cccCCCCccceeeeeEEEEe
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVL 65 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~ 65 (230)
.......++++|+..+|||||+..|+-.-.. .......++|+......+..
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3446689999999999999999887543220 01123457888877776663
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC-----CCCHH-HHHHHHHHHHHhcccccce
Q 026970 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-----RFSQE-EEAALHSLQTLFGKKIFDY 139 (230)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-----~~~~~-~~~~l~~l~~~~~~~~~~~ 139 (230)
....++++|+||+.+|.. -+......+|+.++|+|++. .|... .......+.+.+|. ..
T Consensus 253 -~~~~~tliDaPGhkdFi~-----------nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi---~q 317 (603)
T KOG0458|consen 253 -KSKIVTLIDAPGHKDFIP-----------NMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGI---SQ 317 (603)
T ss_pred -CceeEEEecCCCccccch-----------hhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCc---ce
Confidence 677899999999877542 12234456799999999862 12211 12223345555673 47
Q ss_pred EEEEEeCCCCCC
Q 026970 140 MIVVFTGGDELE 151 (230)
Q Consensus 140 ~ivv~tk~D~~~ 151 (230)
.+|++||+|...
T Consensus 318 livaiNKmD~V~ 329 (603)
T KOG0458|consen 318 LIVAINKMDLVS 329 (603)
T ss_pred EEEEeecccccC
Confidence 999999999985
No 313
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=6.6e-09 Score=83.73 Aligned_cols=89 Identities=21% Similarity=0.201 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-----------------CeEEEEEeCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-----------------GQVVNVIDTPGLFDF 82 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~liDtPG~~~~ 82 (230)
++++++|.|+||||||+|+++.... .....+.+|+.+........+ ...+.|+|.+|+-..
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 6899999999999999999998763 223355566666554332211 125889999999987
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (230)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (230)
.+..+.+..+|..-+. .+|+++.|+++.
T Consensus 81 As~GeGLGNkFL~~IR----evdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIR----EVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhh----hcCeEEEEEEec
Confidence 7777777777776654 558999999853
No 314
>PRK12289 GTPase RsgA; Reviewed
Probab=98.89 E-value=3.4e-09 Score=86.67 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=41.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (230)
..++|+|++|||||||||+|++.....++.. ...+|......... .+ ..|+||||+..+..
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~--~g--~~liDTPG~~~~~l 239 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP--NG--GLLADTPGFNQPDL 239 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC--CC--cEEEeCCCcccccc
Confidence 4689999999999999999998764332211 12245555444332 22 27999999987554
No 315
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.89 E-value=4.3e-08 Score=92.05 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccC------CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC----CcHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA----GSEFV 89 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~----~~~~~ 89 (230)
+=+++||++|+||||+|+.- |...+.... ...+.|..|.. .-....+++||+|.+-... .....
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w-----wf~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW-----WFTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce-----EecCCEEEEcCCCccccCCCcccccHHH
Confidence 66899999999999999876 544322110 01122332222 2234567999999774432 22335
Q ss_pred HHHHHHHHHhhc--CCccEEEEEEeCCCCCC--H--------HHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 90 GKEIVKCIGMAK--DGIHAVLVVFSVRSRFS--Q--------EEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 90 ~~~~~~~~~~~~--~~~~~il~v~d~~~~~~--~--------~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+..+...++... ..+++||+++++.+-++ . ..+..+..+.+.+|.. .|+++|+||+|++.
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhc
Confidence 677777776553 45799999999864332 1 1244455666666654 49999999999985
No 316
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.88 E-value=2.3e-08 Score=91.43 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=75.1
Q ss_pred cHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC-----------------eEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 31 GKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-----------------QVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 31 GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
+||||+.+|.+.++ .....+++|++...+.+..... ..+.||||||+..+
T Consensus 473 ~KTtLLD~iR~t~v--~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F----------- 539 (1049)
T PRK14845 473 HNTTLLDKIRKTRV--AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF----------- 539 (1049)
T ss_pred ccccHHHHHhCCCc--ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH-----------
Confidence 49999999999987 3334678888887776654321 13899999996432
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..........+|++++|+|+++.+...+...+..+... ..|+++|+||+|+..
T Consensus 540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 12223345678999999999877887777777766553 248999999999864
No 317
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=3.2e-09 Score=74.94 Aligned_cols=120 Identities=15% Similarity=0.029 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe--e------CCeEEEEEeCCCCCCCCCCcHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--K------DGQVVNVIDTPGLFDFSAGSEFVGK 91 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~------~~~~~~liDtPG~~~~~~~~~~~~~ 91 (230)
.+.+.+|.+|+|||||+-..+...+...-.+.-++........... + ....+++|||+|..
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE----------- 78 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE----------- 78 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHH-----------
Confidence 4667889999999999877765543211111111111111111110 0 01268899999953
Q ss_pred HHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.++......++.+-++|+++|.++.-+... +.|+..++-.. ..-.+-++++.||+|+..
T Consensus 79 RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA-YcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 79 RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA-YCENPDIVLCGNKADLED 138 (219)
T ss_pred HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh-ccCCCCEEEEcCccchhh
Confidence 344444455666778999999975433333 56666665532 222346999999999875
No 318
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.87 E-value=4.6e-09 Score=82.11 Aligned_cols=60 Identities=25% Similarity=0.310 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccc-C-----CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR-A-----SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~-~-----~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (230)
..++++|.+|||||||||.|++.....++ . ....+|.....+.. .. ..++||||+..+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~---~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG---GLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC---cEEEeCCCccccCC
Confidence 58899999999999999999987543322 1 12234555555443 12 37999999987554
No 319
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.86 E-value=7.2e-09 Score=84.06 Aligned_cols=63 Identities=25% Similarity=0.365 Sum_probs=48.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 86 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~ 86 (230)
..+++++|-|+||||||||+|++.....++. .+|+|...+.... ...+.++||||+..+....
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q~i~~----~~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQWIKL----DDGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceEEEEc----CCCeEEecCCCcCCCCccc
Confidence 4789999999999999999999998744443 4577777665543 3348899999998766544
No 320
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.85 E-value=1.6e-08 Score=82.59 Aligned_cols=90 Identities=16% Similarity=0.082 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC----------------eEEEEEeCCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS 83 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~ 83 (230)
..++|+|.|++|||||+|+|++....... ..+.+|..+....+...+. ..+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a-~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAA-NPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccC-CCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 68999999999999999999988641221 2244555555554444332 268899999998755
Q ss_pred CCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (230)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (230)
+........+...+. .+|++++|+++.
T Consensus 82 s~g~Glgn~fL~~ir----~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIR----EVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHH----hCCEEEEEEeCC
Confidence 444445555665554 448999999873
No 321
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.84 E-value=1e-08 Score=84.62 Aligned_cols=122 Identities=18% Similarity=0.165 Sum_probs=63.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccc----cccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAF----KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~----~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
..++++|.+|||||||||+|++.... ......+++|........ +..+.++||||+.....-...+..+-.+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~----~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL----DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe----CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 68999999999999999999985421 111234455655443322 2346799999998642111111111111
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+. .......+.|.++....+.......++.+.. . ...+.+.+++.+.+.
T Consensus 231 ~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~--~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 231 YIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---E--KTSFTFYVSNELNIH 280 (360)
T ss_pred hcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---C--ceEEEEEccCCceeE
Confidence 111 1134566777776653333222222222211 1 124566666666553
No 322
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.83 E-value=3e-08 Score=81.81 Aligned_cols=129 Identities=21% Similarity=0.289 Sum_probs=85.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCccceeeeeEEEEee----CCeEEEEEeCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPGL 79 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG~ 79 (230)
..-++..++.+-..|||||..+|+........ ....++|...+.....+. ....+.+|||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 44578899999999999999998754321110 124577877766655443 2257889999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHH
Q 026970 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED 159 (230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~ 159 (230)
-|+..... +++..| .+.|+|+|++....... +..+.-.+..+ --++.|+||+|+...+++.+.+
T Consensus 87 VDFsYEVS-------RSLAAC----EGalLvVDAsQGveAQT---lAN~YlAle~~--LeIiPViNKIDLP~Adpervk~ 150 (603)
T COG0481 87 VDFSYEVS-------RSLAAC----EGALLVVDASQGVEAQT---LANVYLALENN--LEIIPVLNKIDLPAADPERVKQ 150 (603)
T ss_pred cceEEEeh-------hhHhhC----CCcEEEEECccchHHHH---HHHHHHHHHcC--cEEEEeeecccCCCCCHHHHHH
Confidence 99874433 555555 58899999987776444 22222222222 2599999999998776554444
Q ss_pred Hh
Q 026970 160 YL 161 (230)
Q Consensus 160 ~l 161 (230)
-+
T Consensus 151 eI 152 (603)
T COG0481 151 EI 152 (603)
T ss_pred HH
Confidence 33
No 323
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.83 E-value=1.4e-08 Score=77.39 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=67.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
-+|+++|-|.+|||||+..|+...- ...+...+|..+-...+. .++-.++++|.||+.+..+....... .+..
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~-y~ga~IQllDLPGIieGAsqgkGRGR----Qvia 135 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIH-YNGANIQLLDLPGIIEGASQGKGRGR----QVIA 135 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEE-ecCceEEEecCcccccccccCCCCCc----eEEE
Confidence 7999999999999999999997753 222333444444444444 58899999999999864433221111 1123
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG 133 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~ 133 (230)
..+.+|.+++|+|++ +. ...+..++.-.+..|
T Consensus 136 vArtaDlilMvLDat-k~-e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 136 VARTADLILMVLDAT-KS-EDQREILEKELEAVG 167 (364)
T ss_pred EeecccEEEEEecCC-cc-hhHHHHHHHHHHHhc
Confidence 346679999999997 32 233445544444445
No 324
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.8e-08 Score=84.40 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-----------------eCCeEEEEEeCCCCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------KDGQVVNVIDTPGLF 80 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtPG~~ 80 (230)
..+.+.++|+-.+|||-|+..|.+.++... ..+++|.......++. ..-..+.+|||||+.
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqeg--eaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEG--EAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccc--cccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 347899999999999999999998876433 2345555443322211 012358899999965
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
.| .+.-......+|.+|+|+|+...+.+.....+..|+.. ..|+||.+||+|.+
T Consensus 552 sF-----------tnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~r-----ktpFivALNKiDRL 605 (1064)
T KOG1144|consen 552 SF-----------TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR-----KTPFIVALNKIDRL 605 (1064)
T ss_pred hh-----------hhhhhccccccceEEEEeehhccCCcchhHHHHHHHhc-----CCCeEEeehhhhhh
Confidence 42 23333444567899999999888988888888877775 34899999999987
No 325
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.5e-08 Score=76.26 Aligned_cols=128 Identities=17% Similarity=0.278 Sum_probs=84.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcc---------cc-----ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRA---------FK-----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~---------~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (230)
.+..+|+.+|+-..|||||..+|+..-. +. ......++|+......+.. ..+.+..+|+||+.|.
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaDY 88 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHADY 88 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHHH
Confidence 3448999999999999999988864321 00 1122456777665555554 6789999999998631
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (230)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~ 162 (230)
+.+.+ ...-+.|+.|+|+.+++..-+..+.-+- |.+..|- +++++.+||+|+.+ +..+.+.++
T Consensus 89 ----------vKNMI-tgAaqmDgAILVVsA~dGpmPqTrEHiL-larqvGv---p~ivvflnK~Dmvd--d~ellelVe 151 (394)
T COG0050 89 ----------VKNMI-TGAAQMDGAILVVAATDGPMPQTREHIL-LARQVGV---PYIVVFLNKVDMVD--DEELLELVE 151 (394)
T ss_pred ----------HHHHh-hhHHhcCccEEEEEcCCCCCCcchhhhh-hhhhcCC---cEEEEEEecccccC--cHHHHHHHH
Confidence 11222 2233558899999987776666654443 3344463 37899999999997 555555544
No 326
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.1e-08 Score=83.91 Aligned_cols=119 Identities=23% Similarity=0.248 Sum_probs=78.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCC---------------CCccceeeeeEEEEe----eCCeEEEEEeC
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS---------------SSGVTSTCEMQRTVL----KDGQVVNVIDT 76 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~---------------~~~~t~~~~~~~~~~----~~~~~~~liDt 76 (230)
+...++|+++|+-++|||+|+..|.+...+..... ..+++....-..... ...+-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 34458999999999999999999987764222100 112222222111211 12346889999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
||+-++. .+.... +..+|++++|+|+.+........+++...+. ..++++|+||.|.+
T Consensus 205 PGHVnF~-------DE~ta~----l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~-----~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFS-------DETTAS----LRLSDGVVLVVDVAEGVMLNTERIIKHAIQN-----RLPIVVVINKVDRL 262 (971)
T ss_pred CCcccch-------HHHHHH----hhhcceEEEEEEcccCceeeHHHHHHHHHhc-----cCcEEEEEehhHHH
Confidence 9998754 233333 3455999999999878887777776654443 23799999999976
No 327
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.80 E-value=3.8e-07 Score=74.00 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~ 40 (230)
.+....|+|.|++|+|||||++.|.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHH
Confidence 3456899999999999999999864
No 328
>PRK00098 GTPase RsgA; Reviewed
Probab=98.80 E-value=3e-08 Score=79.77 Aligned_cols=60 Identities=28% Similarity=0.357 Sum_probs=39.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (230)
...++++|++|+|||||+|+|++......+.- ...+|......... ....++||||+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~----~~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP----GGGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC----CCcEEEECCCcCcc
Confidence 46899999999999999999998765333211 11234433333222 23479999999854
No 329
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=1.5e-08 Score=76.19 Aligned_cols=125 Identities=21% Similarity=0.300 Sum_probs=75.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.++|+++|.+|+||||+=..+. .+...-.....+.|.+....+..+..+--+.+||+.|.. ..+...+...-.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF-~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe------~fmen~~~~q~d 76 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIF-ANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE------EFMENYLSSQED 76 (295)
T ss_pred cceEEEeccCCCCccccchhhh-hhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH------HHHHHHHhhcch
Confidence 3789999999999999644443 222111223455577766665555455677899988843 112222222233
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH----HHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE----EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~----~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
..+..++++++|+|+..+--..| ...++.+.+ ..+...++..+.|.|+...+
T Consensus 77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~---~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQ---NSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHh---cCCcceEEEEEeechhcccc
Confidence 45677899999999974422222 233333333 33344789999999998643
No 330
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.8e-08 Score=87.20 Aligned_cols=121 Identities=25% Similarity=0.330 Sum_probs=83.4
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccc--------------cCCCCccceeeeeEEEEeeCCeEEEEEeCCC
Q 026970 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78 (230)
Q Consensus 13 ~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG 78 (230)
..+....+++.++.+-..|||||+.+|+..+...+ .....++|......... ..+..+.+||+||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~-~~~~~~nlidspg 81 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL-HKDYLINLIDSPG 81 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc-cCceEEEEecCCC
Confidence 34455668999999999999999999976654211 11234666665544433 2677899999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
+.|+.+.. .....-.|+.++++|+-+.........++..... + ...++|+||+|.+
T Consensus 82 hvdf~sev-----------ssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-~----~~~~lvinkidrl 137 (887)
T KOG0467|consen 82 HVDFSSEV-----------SSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-G----LKPILVINKIDRL 137 (887)
T ss_pred ccchhhhh-----------hhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-c----CceEEEEehhhhH
Confidence 99876322 2233345889999999888887777766633221 1 2588999999954
No 331
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.79 E-value=3e-08 Score=78.58 Aligned_cols=93 Identities=22% Similarity=0.222 Sum_probs=66.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC----------------eEEEEEeCCC
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPG 78 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG 78 (230)
..+..+.++++|.+++|||||+|+|+..... ....+.+|+++....+...+. -.+.++|.+|
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~--~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAG--AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCC--ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 3446689999999999999999999987763 223455677666555433221 2589999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeC
Q 026970 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSV 113 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~ 113 (230)
+-...+..+.+...|...+. .+|+++.|+++
T Consensus 94 LvkGAs~G~GLGN~FLs~iR----~vDaifhVVr~ 124 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFLSHIR----HVDAIFHVVRA 124 (391)
T ss_pred cccCcccCcCchHHHHHhhh----hccceeEEEEe
Confidence 98777777777776666554 45888888765
No 332
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.79 E-value=3.1e-08 Score=79.32 Aligned_cols=60 Identities=32% Similarity=0.391 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (230)
..++++|++|+|||||+|.|+|......+.. ...+|......... . ...++||||+.++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~--~--~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP--G--GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC--C--CCEEEECCCCCccC
Confidence 6899999999999999999999765433211 12234444443332 1 23799999997644
No 333
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=5.8e-08 Score=69.18 Aligned_cols=115 Identities=12% Similarity=0.076 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
+.-+++++|--++|||||++.|-......- -+|.++....... .+..++.+|.-|+. +-+...
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh-----vPTlHPTSE~l~I-g~m~ftt~DLGGH~-----------qArr~w 81 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-----VPTLHPTSEELSI-GGMTFTTFDLGGHL-----------QARRVW 81 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccccc-----CCCcCCChHHhee-cCceEEEEccccHH-----------HHHHHH
Confidence 346899999999999999999965543111 1133332222333 66788999988863 223555
Q ss_pred HhhcCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+++.+|++++.+|+.+ ++.+ .+..++.+... ..-.+.|++++.||+|...
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~e-s~~eld~ll~~-e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAE-SKKELDALLSD-ESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHH-HHHHHHHHHhH-HHHhcCcceeecccccCCC
Confidence 677888899999999853 3322 23333333322 1124569999999999875
No 334
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.77 E-value=4.1e-08 Score=79.41 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=68.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccc------ccCCCCc-----------cceeeeeEEEE---------------
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK------SRASSSG-----------VTSTCEMQRTV--------------- 64 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~------~~~~~~~-----------~t~~~~~~~~~--------------- 64 (230)
..+..|+++|++|+||||++..|.+.-... ....... ......+....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 345799999999999999998886532110 0000000 00000111000
Q ss_pred -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh----cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 026970 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139 (230)
Q Consensus 65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (230)
...+..+.||||||..... .....++.+..... ...++.+++|++++.. .........+.+.+ ..
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~---~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~~-----~~ 261 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNK---TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEAV-----GL 261 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCC---HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhhC-----CC
Confidence 0134579999999986533 33334444433221 2356889999999733 22222223333322 35
Q ss_pred EEEEEeCCCCCCC
Q 026970 140 MIVVFTGGDELED 152 (230)
Q Consensus 140 ~ivv~tk~D~~~~ 152 (230)
.-+|+||.|....
T Consensus 262 ~giIlTKlD~t~~ 274 (318)
T PRK10416 262 TGIILTKLDGTAK 274 (318)
T ss_pred CEEEEECCCCCCC
Confidence 7799999997653
No 335
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.75 E-value=3.6e-08 Score=71.81 Aligned_cols=57 Identities=30% Similarity=0.419 Sum_probs=39.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 79 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~ 79 (230)
...+++++|.+|+||||++|.+.+........ ..+.|...++.. .+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~-~~~~t~~~~~~~----~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSP-SPGYTKGEQLVK----ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeeeeeEEEE----cCCCEEEEECcCC
Confidence 44788999999999999999999865433222 233444433222 2346899999995
No 336
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.73 E-value=3.6e-08 Score=80.78 Aligned_cols=123 Identities=20% Similarity=0.160 Sum_probs=67.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc------ccccCCCC---cc--------ceeeeeEEE-------------EeeC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA------FKSRASSS---GV--------TSTCEMQRT-------------VLKD 67 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~------~~~~~~~~---~~--------t~~~~~~~~-------------~~~~ 67 (230)
.+.+|+|+|++|+||||++..|+..-. ........ .. .....+... ....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 347899999999999999999864211 00000000 00 000000000 0001
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 147 (230)
+..+.||||||... .......++.+.+... .+|.+++|++++.. .......++.+.. ...--+|+||.
T Consensus 320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsATtk-~~d~~~i~~~F~~------~~idglI~TKL 387 (436)
T PRK11889 320 RVDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSASMK-SKDMIEIITNFKD------IHIDGIVFTKF 387 (436)
T ss_pred CCCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCccC-hHHHHHHHHHhcC------CCCCEEEEEcc
Confidence 34789999999864 2344455565555433 35788899988622 2222333333332 23567999999
Q ss_pred CCCCC
Q 026970 148 DELED 152 (230)
Q Consensus 148 D~~~~ 152 (230)
|....
T Consensus 388 DET~k 392 (436)
T PRK11889 388 DETAS 392 (436)
T ss_pred cCCCC
Confidence 98764
No 337
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.72 E-value=2.1e-07 Score=73.75 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=47.9
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh----cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEE
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~iv 142 (230)
.+..+.||||||.... +.....++.+..... ...+|.+++|++++. ..........+.+.++ ..-+
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~-----~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVG-----LTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCC-----CCEE
Confidence 4468899999998753 333444444443322 234789999999962 3333333344443332 5779
Q ss_pred EEeCCCCCCCChh
Q 026970 143 VFTGGDELEDNDE 155 (230)
Q Consensus 143 v~tk~D~~~~~~~ 155 (230)
|+||.|....-+.
T Consensus 223 IlTKlDe~~~~G~ 235 (272)
T TIGR00064 223 ILTKLDGTAKGGI 235 (272)
T ss_pred EEEccCCCCCccH
Confidence 9999998754333
No 338
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.66 E-value=4.8e-08 Score=81.29 Aligned_cols=63 Identities=32% Similarity=0.336 Sum_probs=49.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 86 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~ 86 (230)
..+|+++|-++|||||+||+|.|.+...+ .+.+|-|++.+...+ ...+.+.|+||+--++...
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~l----s~~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFL----SPSVCLCDCPGLVFPSFSP 376 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEc----CCCceecCCCCccccCCCc
Confidence 58999999999999999999999986433 346677777666543 3467899999998766543
No 339
>PRK14974 cell division protein FtsY; Provisional
Probab=98.66 E-value=1e-07 Score=77.44 Aligned_cols=76 Identities=18% Similarity=0.157 Sum_probs=46.2
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 147 (230)
+..+.||||||.... ......++....... .+|.+++|+++... .......+.+.+.++ ..-+|+||.
T Consensus 222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~~--~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~-----~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMHT---DANLMDELKKIVRVT--KPDLVIFVGDALAG--NDAVEQAREFNEAVG-----IDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccCC---cHHHHHHHHHHHHhh--CCceEEEeeccccc--hhHHHHHHHHHhcCC-----CCEEEEeee
Confidence 456899999998743 234455555544333 46888999998632 222333333333322 577999999
Q ss_pred CCCCCChh
Q 026970 148 DELEDNDE 155 (230)
Q Consensus 148 D~~~~~~~ 155 (230)
|....-+.
T Consensus 290 D~~~~~G~ 297 (336)
T PRK14974 290 DADAKGGA 297 (336)
T ss_pred cCCCCccH
Confidence 98754333
No 340
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.66 E-value=1.7e-07 Score=76.73 Aligned_cols=122 Identities=22% Similarity=0.249 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcccccc-CCCCccceeeeeEE----------------------------EEeeCCe
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQR----------------------------TVLKDGQ 69 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~----------------------------~~~~~~~ 69 (230)
...|+|+|+|||||||.+-.|...-..... ..-.-+|.+.-... +......
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 689999999999999999888654320111 11111122211110 0111345
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (230)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 149 (230)
.++||||.|.... +.....++...+..+ .. .-+.+|++++.. ..-++.+...|+. .+.--+++||.|.
T Consensus 283 d~ILVDTaGrs~~---D~~~i~el~~~~~~~-~~-i~~~Lvlsat~K-----~~dlkei~~~f~~--~~i~~~I~TKlDE 350 (407)
T COG1419 283 DVILVDTAGRSQY---DKEKIEELKELIDVS-HS-IEVYLVLSATTK-----YEDLKEIIKQFSL--FPIDGLIFTKLDE 350 (407)
T ss_pred CEEEEeCCCCCcc---CHHHHHHHHHHHhcc-cc-ceEEEEEecCcc-----hHHHHHHHHHhcc--CCcceeEEEcccc
Confidence 7999999998643 344566666666555 22 346667777632 1223333333442 2356689999998
Q ss_pred CCC
Q 026970 150 LED 152 (230)
Q Consensus 150 ~~~ 152 (230)
...
T Consensus 351 T~s 353 (407)
T COG1419 351 TTS 353 (407)
T ss_pred cCc
Confidence 764
No 341
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=9.8e-08 Score=68.56 Aligned_cols=120 Identities=13% Similarity=0.059 Sum_probs=71.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcccc-cc--CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFK-SR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~-~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....|+++|.-++|||||+.++-....-. .+ ++....|.......+.. +...+.+||.-|.. .+.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQe-----------~lr 83 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQE-----------SLR 83 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCChH-----------HHH
Confidence 34789999999999999997763221100 11 12223344444555554 46789999987742 223
Q ss_pred HHHHhhcCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+|..+|+++|++|+++ ++.......-+.+..- ..-..|+++++||.|+-.
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E--~leg~p~L~lankqd~q~ 140 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENE--KLEGAPVLVLANKQDLQN 140 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHH--HhcCCchhhhcchhhhhh
Confidence 344456667799999999974 3333322222222111 112348999999999865
No 342
>PRK13796 GTPase YqeH; Provisional
Probab=98.64 E-value=6.7e-08 Score=79.89 Aligned_cols=59 Identities=29% Similarity=0.279 Sum_probs=39.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc----ccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA----FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (230)
...++++|.+|||||||||+|++... .......+++|.......+ .+ ...++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~~--~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--DD--GSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--CC--CcEEEECCCccc
Confidence 35899999999999999999986431 1111234556665443332 12 347999999964
No 343
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.62 E-value=8.4e-08 Score=74.56 Aligned_cols=77 Identities=17% Similarity=0.068 Sum_probs=32.8
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc-ccccceEEEEEeCC
Q 026970 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG-KKIFDYMIVVFTGG 147 (230)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~-~~~~~~~ivv~tk~ 147 (230)
.+.++||||..+. ......+...+.... ...-++++++|+. .++......-..+..... -...-|.+.|+||+
T Consensus 92 ~y~l~DtPGQiEl----f~~~~~~~~i~~~L~~~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~ 166 (238)
T PF03029_consen 92 DYLLFDTPGQIEL----FTHSDSGRKIVERLQKNGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKI 166 (238)
T ss_dssp SEEEEE--SSHHH----HHHSHHHHHHHHTSSS----EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--G
T ss_pred cEEEEeCCCCEEE----EEechhHHHHHHHHhhhcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCCCCEEEeeecc
Confidence 6899999997642 111222222222222 2334788888987 443322111111111110 11234899999999
Q ss_pred CCCC
Q 026970 148 DELE 151 (230)
Q Consensus 148 D~~~ 151 (230)
|+.+
T Consensus 167 Dl~~ 170 (238)
T PF03029_consen 167 DLLS 170 (238)
T ss_dssp GGS-
T ss_pred Cccc
Confidence 9986
No 344
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=2.6e-07 Score=78.41 Aligned_cols=187 Identities=15% Similarity=0.187 Sum_probs=116.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc----------------CCCCccceeeeeEEEEeeCCeEEEEEeCCC
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 78 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG 78 (230)
+....++|++..+-.+||||+-+.++........ ....++|.........| ...++.+|||||
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPG 113 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPG 113 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCC
Confidence 3456689999999999999999888654432111 11246676666666666 678999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHH
Q 026970 79 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE 158 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~ 158 (230)
+.|+-...+ ++ .+-.|+.++|+++-.+.........+.++++ + .|.+..+||+|.+..+.....
T Consensus 114 HvDFT~EVe-------RA----LrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-~----vP~i~FiNKmDRmGa~~~~~l 177 (721)
T KOG0465|consen 114 HVDFTFEVE-------RA----LRVLDGAVLVLDAVAGVESQTETVWRQMKRY-N----VPRICFINKMDRMGASPFRTL 177 (721)
T ss_pred ceeEEEEeh-------hh----hhhccCeEEEEEcccceehhhHHHHHHHHhc-C----CCeEEEEehhhhcCCChHHHH
Confidence 998765544 33 3344777888877668887777777777775 2 378899999999976655444
Q ss_pred HHhcccCC--c-hhh---hhHHHHHhHHHHHHHcC--------C-----CcHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 026970 159 DYLGRECP--K-PLK---KGATKLRDQQFEVDSLK--------G-----YSKREISELKEQMHKSYEDQLKRITEMCAG 218 (230)
Q Consensus 159 ~~l~~~~~--~-~l~---~~~~~~~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
+.+.+... . .++ ..-..+.++.++++... + -..+.+.++-.+.++++-+.+...-+.+.+
T Consensus 178 ~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e 256 (721)
T KOG0465|consen 178 NQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAE 256 (721)
T ss_pred HHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44433111 1 111 11124556666664431 1 234555555555555554445444444433
No 345
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.58 E-value=2.4e-07 Score=76.15 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=69.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccC-CCCccceee------------------eeEEE----------EeeCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA-SSSGVTSTC------------------EMQRT----------VLKDG 68 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~-~~~~~t~~~------------------~~~~~----------~~~~~ 68 (230)
....++|+|++|+||||++..|.+......+. ...-++.+. .+... ....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34699999999999999999987542110000 000000000 00000 00134
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc---cceEEEEEe
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI---FDYMIVVFT 145 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~---~~~~ivv~t 145 (230)
..+.+|||||....+ ....+.+. .+.. ...+.-.++|++++..... ....+..+....+.+. ....-+|+|
T Consensus 216 ~DlVLIDTaG~~~~d---~~l~e~La-~L~~-~~~~~~~lLVLsAts~~~~-l~evi~~f~~~~~~p~~~~~~~~~~I~T 289 (374)
T PRK14722 216 KHMVLIDTIGMSQRD---RTVSDQIA-MLHG-ADTPVQRLLLLNATSHGDT-LNEVVQAYRSAAGQPKAALPDLAGCILT 289 (374)
T ss_pred CCEEEEcCCCCCccc---HHHHHHHH-HHhc-cCCCCeEEEEecCccChHH-HHHHHHHHHHhhcccccccCCCCEEEEe
Confidence 578999999986422 22223222 2222 2234567889998744322 1233444444322110 123568899
Q ss_pred CCCCCCCChhhHH
Q 026970 146 GGDELEDNDETLE 158 (230)
Q Consensus 146 k~D~~~~~~~~~~ 158 (230)
|.|....-+..+.
T Consensus 290 KlDEt~~~G~~l~ 302 (374)
T PRK14722 290 KLDEASNLGGVLD 302 (374)
T ss_pred ccccCCCccHHHH
Confidence 9998764343333
No 346
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.57 E-value=5.3e-07 Score=75.25 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=65.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCc-ccee------------------eeeEE----------EEeeCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VTST------------------CEMQR----------TVLKDG 68 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~-~t~~------------------~~~~~----------~~~~~~ 68 (230)
.+.+|+|+|++|+||||++..|.+......+....+ ++.+ ..... .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 457999999999999999998876421000000000 0000 00000 000134
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 148 (230)
..+.+|||+|..... .....++... .. ....+-.++|++++.. .. .+..+...|.. ....-+|+||.|
T Consensus 270 ~d~VLIDTaGrsqrd---~~~~~~l~~l-~~-~~~~~~~~LVl~at~~--~~---~~~~~~~~f~~--~~~~~~I~TKlD 337 (420)
T PRK14721 270 KHMVLIDTVGMSQRD---QMLAEQIAML-SQ-CGTQVKHLLLLNATSS--GD---TLDEVISAYQG--HGIHGCIITKVD 337 (420)
T ss_pred CCEEEecCCCCCcch---HHHHHHHHHH-hc-cCCCceEEEEEcCCCC--HH---HHHHHHHHhcC--CCCCEEEEEeee
Confidence 468999999986422 2233333332 21 1234567888888722 22 22222233321 235679999999
Q ss_pred CCCCChh
Q 026970 149 ELEDNDE 155 (230)
Q Consensus 149 ~~~~~~~ 155 (230)
....-+.
T Consensus 338 Et~~~G~ 344 (420)
T PRK14721 338 EAASLGI 344 (420)
T ss_pred CCCCccH
Confidence 8764333
No 347
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=6.4e-07 Score=65.36 Aligned_cols=116 Identities=20% Similarity=0.113 Sum_probs=73.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe--e-CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--K-DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~-~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....++++|..|.||||++++.+-..+-... ..|.........+ . +..++.+|||.|..-...-.+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y----~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd------- 77 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTY----PATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD------- 77 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecc----cCcceeEEeeeeeecccCcEEEEeeecccceeeccccc-------
Confidence 4689999999999999999887755442211 1233222222221 1 236889999999754322111
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.++-+..+.++++|++.+++-.. ..+-+.+.+.++. .|++++.||.|--.
T Consensus 78 ----gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 78 ----GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKA 128 (216)
T ss_pred ----ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceeccc
Confidence 22233446788899987777554 4555566665553 48999999999654
No 348
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.56 E-value=3e-07 Score=81.50 Aligned_cols=124 Identities=21% Similarity=0.217 Sum_probs=65.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccC-CCCccceee------------------eeEE----------EEeeCCe
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA-SSSGVTSTC------------------EMQR----------TVLKDGQ 69 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~-~~~~~t~~~------------------~~~~----------~~~~~~~ 69 (230)
+..|+|+|++|+||||++..|++......+. ...-++.+. .+.. +....+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4689999999999999999988643211100 000000000 0000 0001334
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCC
Q 026970 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGD 148 (230)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D 148 (230)
.++||||||....+ ..+.+++..... ...++-+++|++++.. ..+ ...++.+....+ ....-+|+||.|
T Consensus 265 D~VLIDTAGRs~~d---~~l~eel~~l~~--~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~---~~i~glIlTKLD 334 (767)
T PRK14723 265 HLVLIDTVGMSQRD---RNVSEQIAMLCG--VGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAG---EDVDGCIITKLD 334 (767)
T ss_pred CEEEEeCCCCCccC---HHHHHHHHHHhc--cCCCCeEEEEECCCCc--HHHHHHHHHHHhhccc---CCCCEEEEeccC
Confidence 78999999976432 333344433322 2345678999998732 222 223333332211 124568999999
Q ss_pred CCCC
Q 026970 149 ELED 152 (230)
Q Consensus 149 ~~~~ 152 (230)
....
T Consensus 335 Et~~ 338 (767)
T PRK14723 335 EATH 338 (767)
T ss_pred CCCC
Confidence 8754
No 349
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.53 E-value=1e-06 Score=71.11 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
.....|+++|++|+|||||++.|..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3458999999999999999999764
No 350
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.52 E-value=9.7e-07 Score=73.26 Aligned_cols=126 Identities=18% Similarity=0.219 Sum_probs=66.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcccc----c---cCCC--Ccc---------ceeeeeEEE---------EeeCCeEE
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFK----S---RASS--SGV---------TSTCEMQRT---------VLKDGQVV 71 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~----~---~~~~--~~~---------t~~~~~~~~---------~~~~~~~~ 71 (230)
+..++++|++|+||||++..|+...... . .... .+. ......... ....+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4679999999999999998886422100 0 0000 000 000000000 00135578
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHHhhc-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
.||||||+...+ .....++...+.... ..++-+++|++++... .......+ .|. .....-+|+||.|..
T Consensus 303 VLIDTaGr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-~~~~~~~~----~f~--~~~~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLK----AYE--SLNYRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-HHHHHHHH----Hhc--CCCCCEEEEEcccCC
Confidence 999999986432 234444545443332 2245688899987331 11222222 222 123577999999987
Q ss_pred CCCh
Q 026970 151 EDND 154 (230)
Q Consensus 151 ~~~~ 154 (230)
..-+
T Consensus 373 ~~~G 376 (432)
T PRK12724 373 DFLG 376 (432)
T ss_pred CCcc
Confidence 5433
No 351
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=8.2e-07 Score=70.18 Aligned_cols=119 Identities=18% Similarity=0.253 Sum_probs=68.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEE--------------------E-----eeCCeEE
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRT--------------------V-----LKDGQVV 71 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~--------------------~-----~~~~~~~ 71 (230)
...+|+.+|+-..|||||..+|+|..... +..-..++|....|... . ..--+.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 45899999999999999999999864310 10011122222111110 0 0011478
Q ss_pred EEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCH-HHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 72 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ-EEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~-~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
.|+|.||+. -+...+-....-.|+.++|+.+++++.+ ...+-+-.| +..| .+++++|-||.|+.
T Consensus 89 SfVDaPGHe-----------~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIig---ik~iiIvQNKIDlV 153 (415)
T COG5257 89 SFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIG---IKNIIIVQNKIDLV 153 (415)
T ss_pred EEeeCCchH-----------HHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhc---cceEEEEeccccee
Confidence 999999963 1112221222234889999998755433 333333332 3335 34899999999998
Q ss_pred C
Q 026970 151 E 151 (230)
Q Consensus 151 ~ 151 (230)
.
T Consensus 154 ~ 154 (415)
T COG5257 154 S 154 (415)
T ss_pred c
Confidence 6
No 352
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1e-06 Score=70.07 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=84.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcc------c---c-----ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRA------F---K-----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~------~---~-----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (230)
.+..+|+-||+-..|||||-.+|+.... + . ......++|+......+.. ..+.+.-+|+||+.|+
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHADY 130 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchHHH
Confidence 4558999999999999999888753211 0 0 1122456676655444443 5678889999998641
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc
Q 026970 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 162 (230)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~ 162 (230)
.+-+.....+-|+.|+|+.+++..-+..++-+-.-++ .|- +++++.+||.|..+ ++...+.++
T Consensus 131 -----------IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ-VGV---~~ivvfiNKvD~V~--d~e~leLVE 193 (449)
T KOG0460|consen 131 -----------IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ-VGV---KHIVVFINKVDLVD--DPEMLELVE 193 (449)
T ss_pred -----------HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH-cCC---ceEEEEEecccccC--CHHHHHHHH
Confidence 1222233345689999999987776666655543333 464 47999999999996 555555555
No 353
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.49 E-value=2.2e-06 Score=73.85 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+..+-++..+.-.++ -+|+|||++|+|||||++.|.|...
T Consensus 15 ~~~l~~~~~l~~~~G--~riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 15 DRPLLENVSLTLNPG--ERIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred CceeecCCcceeCCC--CEEEEECCCCCCHHHHHHHHcCCCc
Confidence 344445544544443 7999999999999999999999864
No 354
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.49 E-value=1.1e-06 Score=64.10 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~ 42 (230)
.++++|..|+|||||++.++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 6789999999999999998765
No 355
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.48 E-value=5.6e-07 Score=70.81 Aligned_cols=72 Identities=28% Similarity=0.292 Sum_probs=50.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc----CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (230)
.+...++.++|-||+|||||||++......... -..+++|...... +...+...++++||||...++..+.+
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~vy~iDTPGil~P~I~~~e 215 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPPVYLIDTPGILVPSIVDVE 215 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCceEEecCCCcCCCCCCCHH
Confidence 345689999999999999999998544321111 1245667665542 22336678999999999988766654
No 356
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=3.3e-08 Score=80.38 Aligned_cols=118 Identities=20% Similarity=0.277 Sum_probs=82.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccc----------------ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK----------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (230)
..-++|+++.+-.+||||.-..|+...... ......++|.......+.| .|.++.+|||||+-
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpghv 113 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGHV 113 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCcc
Confidence 344799999999999999988875432211 0112357777777777777 88999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
|+....+ +|+ +-.|+++.|+|++..........++.- .....|.+..+||+|++.
T Consensus 114 df~leve-------rcl----rvldgavav~dasagve~qtltvwrqa-----dk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 114 DFRLEVE-------RCL----RVLDGAVAVFDASAGVEAQTLTVWRQA-----DKFKIPAHCFINKMDKLA 168 (753)
T ss_pred eEEEEHH-------HHH----HHhcCeEEEEeccCCcccceeeeehhc-----cccCCchhhhhhhhhhhh
Confidence 8775444 444 444899999999867665443333222 223457888899999874
No 357
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.47 E-value=9.1e-07 Score=70.55 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=72.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCcc-------------cccc--------CCCCccceee-eeEE-----------
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRA-------------FKSR--------ASSSGVTSTC-EMQR----------- 62 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~-------------~~~~--------~~~~~~t~~~-~~~~----------- 62 (230)
.+.+..|+++|-+|+||||.|-.|+..-. |... ....++..-. ....
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 44578999999999999999987753211 0000 0000000000 0000
Q ss_pred EEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEE
Q 026970 63 TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD-GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 141 (230)
Q Consensus 63 ~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~i 141 (230)
.-...+..+.++||.|-......-..-.+.+.+.+....+ -+|-+++++|++. ..+.....+.+.+..+ -.-
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt--Gqnal~QAk~F~eav~-----l~G 288 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT--GQNALSQAKIFNEAVG-----LDG 288 (340)
T ss_pred HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc--ChhHHHHHHHHHHhcC-----Cce
Confidence 0001345799999999876544333334444555444433 3577999999973 3344455556666554 466
Q ss_pred EEEeCCCCC
Q 026970 142 VVFTGGDEL 150 (230)
Q Consensus 142 vv~tk~D~~ 150 (230)
+|+||.|-.
T Consensus 289 iIlTKlDgt 297 (340)
T COG0552 289 IILTKLDGT 297 (340)
T ss_pred EEEEecccC
Confidence 999999954
No 358
>PTZ00099 rab6; Provisional
Probab=98.44 E-value=1.4e-06 Score=64.78 Aligned_cols=70 Identities=21% Similarity=0.147 Sum_probs=47.8
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCC
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGG 147 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~ 147 (230)
..+.||||||...+ ......++.++|++|+|+|++++.+... ..++..+.+..+. ..|+++|+||+
T Consensus 29 v~l~iwDt~G~e~~-----------~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~--~~piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQERF-----------RSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--DVIIALVGNKT 95 (176)
T ss_pred EEEEEEECCChHHh-----------hhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECc
Confidence 57889999996432 2334456789999999999986544333 3455555544332 35789999999
Q ss_pred CCCC
Q 026970 148 DELE 151 (230)
Q Consensus 148 D~~~ 151 (230)
|+..
T Consensus 96 DL~~ 99 (176)
T PTZ00099 96 DLGD 99 (176)
T ss_pred cccc
Confidence 9864
No 359
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.43 E-value=1.4e-06 Score=71.41 Aligned_cols=125 Identities=19% Similarity=0.114 Sum_probs=66.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc------cc--cccCCCCcc---------ceeeeeEEEEe-------------eC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR------AF--KSRASSSGV---------TSTCEMQRTVL-------------KD 67 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~------~~--~~~~~~~~~---------t~~~~~~~~~~-------------~~ 67 (230)
.+..++++|++|+||||++..|.... +. .......+. .....+..... ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 45789999999999999998886321 10 000000000 00000110000 02
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 147 (230)
+..++||||||.... ......++....... .+|.+++|++++ ... ....+.+.. |. .....-+|+||.
T Consensus 285 ~~D~VLIDTAGr~~~---d~~~l~EL~~l~~~~--~p~~~~LVLsag--~~~--~d~~~i~~~-f~--~l~i~glI~TKL 352 (407)
T PRK12726 285 CVDHILIDTVGRNYL---AEESVSEISAYTDVV--HPDLTCFTFSSG--MKS--ADVMTILPK-LA--EIPIDGFIITKM 352 (407)
T ss_pred CCCEEEEECCCCCcc---CHHHHHHHHHHhhcc--CCceEEEECCCc--ccH--HHHHHHHHh-cC--cCCCCEEEEEcc
Confidence 457899999998642 344445555544333 456777777764 222 223333333 32 123567899999
Q ss_pred CCCCCCh
Q 026970 148 DELEDND 154 (230)
Q Consensus 148 D~~~~~~ 154 (230)
|....-+
T Consensus 353 DET~~~G 359 (407)
T PRK12726 353 DETTRIG 359 (407)
T ss_pred cCCCCcc
Confidence 9875433
No 360
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.40 E-value=1.3e-06 Score=73.52 Aligned_cols=132 Identities=23% Similarity=0.203 Sum_probs=66.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc-c----ccc---CCCCcc------c-----eeeeeEE----------EEeeCCe
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA-F----KSR---ASSSGV------T-----STCEMQR----------TVLKDGQ 69 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~-~----~~~---~~~~~~------t-----~~~~~~~----------~~~~~~~ 69 (230)
...++|+|++|+||||++..|..... . ... ...... . ....+.. +....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999999877754321 0 000 000000 0 0000000 0001245
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (230)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 149 (230)
.+.||||||.... .......+...+... .....+++|++++. ...+ +..+...|..- ...-+|+||.|.
T Consensus 301 DlVlIDt~G~~~~---d~~~~~~L~~ll~~~-~~~~~~~LVl~a~~--~~~~---l~~~~~~f~~~--~~~~vI~TKlDe 369 (424)
T PRK05703 301 DVILIDTAGRSQR---DKRLIEELKALIEFS-GEPIDVYLVLSATT--KYED---LKDIYKHFSRL--PLDGLIFTKLDE 369 (424)
T ss_pred CEEEEeCCCCCCC---CHHHHHHHHHHHhcc-CCCCeEEEEEECCC--CHHH---HHHHHHHhCCC--CCCEEEEecccc
Confidence 7899999998642 233344455554422 22356677888762 2222 22222333311 234699999998
Q ss_pred CCCChhhHHHHhc
Q 026970 150 LEDNDETLEDYLG 162 (230)
Q Consensus 150 ~~~~~~~~~~~l~ 162 (230)
...-+ .+.+++.
T Consensus 370 t~~~G-~i~~~~~ 381 (424)
T PRK05703 370 TSSLG-SILSLLI 381 (424)
T ss_pred ccccc-HHHHHHH
Confidence 75433 3444433
No 361
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.40 E-value=1.8e-06 Score=73.57 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~ 41 (230)
....|+|+|++|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988864
No 362
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.39 E-value=2.2e-06 Score=72.10 Aligned_cols=71 Identities=20% Similarity=0.160 Sum_probs=42.7
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 148 (230)
..++|+||||.... .....+++....... .+|.+++|+|++.. . ..+..... |... ....-+|+||.|
T Consensus 176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~~~--~pdevlLVvda~~g--q---~av~~a~~-F~~~-l~i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHAL---EEDLIEEMKEIKEAV--KPDEVLLVIDATIG--Q---QAKNQAKA-FHEA-VGIGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccc---hHHHHHHHHHHHHHh--cccceeEEEecccc--H---HHHHHHHH-HHhc-CCCCEEEEeccc
Confidence 37899999997642 344555555543333 46789999998633 2 22333333 2221 124668899999
Q ss_pred CCC
Q 026970 149 ELE 151 (230)
Q Consensus 149 ~~~ 151 (230)
...
T Consensus 244 ~~a 246 (437)
T PRK00771 244 GTA 246 (437)
T ss_pred CCC
Confidence 754
No 363
>PRK10867 signal recognition particle protein; Provisional
Probab=98.38 E-value=1.7e-06 Score=72.68 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=42.1
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 147 (230)
+..+.|+||||.... ++....++....... .++.+++|+|+.. ........+.+.+.+ ...-+|+||.
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v--~p~evllVlda~~--gq~av~~a~~F~~~~-----~i~giIlTKl 250 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAAV--NPDEILLVVDAMT--GQDAVNTAKAFNEAL-----GLTGVILTKL 250 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHhh--CCCeEEEEEeccc--HHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence 356899999997642 233444444443322 4577899999752 223333344444322 2466888999
Q ss_pred CCCC
Q 026970 148 DELE 151 (230)
Q Consensus 148 D~~~ 151 (230)
|...
T Consensus 251 D~~~ 254 (433)
T PRK10867 251 DGDA 254 (433)
T ss_pred cCcc
Confidence 9643
No 364
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.38 E-value=4.2e-07 Score=70.25 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=19.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh
Q 026970 17 NGERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~ 40 (230)
.+..+|++.|++|+|||||++.|.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHH
Confidence 355899999999999999999984
No 365
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.36 E-value=3.1e-06 Score=59.85 Aligned_cols=121 Identities=17% Similarity=0.070 Sum_probs=72.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
.-..+|+++|.+..|||||+-...+...........++........+. .....+.+||.-|.. ++.+.
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-~t~IsfSIwdlgG~~-----------~~~n~ 85 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-GTDISFSIWDLGGQR-----------EFINM 85 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEec-ceEEEEEEEecCCcH-----------hhhcc
Confidence 345899999999999999998888765421111111211111111111 123467899988843 33444
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+...-.++-++||++|.+.+.+-.. ..++.++..|.+...--++|.||-|.+-
T Consensus 86 lPiac~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiPilvGTKyD~fi 138 (205)
T KOG1673|consen 86 LPIACKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIPILVGTKYDLFI 138 (205)
T ss_pred CceeecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccceEEeccchHhhh
Confidence 4444456678999999986655433 3445555544332234568999999874
No 366
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.36 E-value=1.3e-06 Score=68.92 Aligned_cols=125 Identities=20% Similarity=0.153 Sum_probs=68.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccc---cc---cCCCC-----------ccceeeeeEEEE-------------eeC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAF---KS---RASSS-----------GVTSTCEMQRTV-------------LKD 67 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~---~~---~~~~~-----------~~t~~~~~~~~~-------------~~~ 67 (230)
+..+++++|++|+||||++..|++.... .. ..... .......+.... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4479999999999999999888654210 00 00000 000000111000 002
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 147 (230)
+..+.++||||.... ......++...+... .++.+++|++++.. .......++. |.. ...--+|+||.
T Consensus 154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~~-~~d~~~~~~~----f~~--~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMK-SKDMIEIITN----FKD--IHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCccC-HHHHHHHHHH----hCC--CCCCEEEEEee
Confidence 457899999997642 244455555554433 45678999998622 2122233332 332 23567999999
Q ss_pred CCCCCCh
Q 026970 148 DELEDND 154 (230)
Q Consensus 148 D~~~~~~ 154 (230)
|....-+
T Consensus 222 Det~~~G 228 (270)
T PRK06731 222 DETASSG 228 (270)
T ss_pred cCCCCcc
Confidence 9876433
No 367
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.36 E-value=9.4e-06 Score=67.37 Aligned_cols=124 Identities=18% Similarity=0.171 Sum_probs=67.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc----------cccccCCC-C-cc--------c-eeeeeEEE----------Eee
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR----------AFKSRASS-S-GV--------T-STCEMQRT----------VLK 66 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~----------~~~~~~~~-~-~~--------t-~~~~~~~~----------~~~ 66 (230)
.+..|+++|++|+||||++..|+..- +....... . +. . ....+... ...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35789999999999999998876321 10000000 0 00 0 00000000 001
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeC
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 146 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk 146 (230)
.+..+.+|||||.... +.....++...+....+ .+-+++|++++.. ..+ ..+.+.+. .. ....-+|+||
T Consensus 253 ~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~~-~~e~~LVlsat~~--~~~--~~~~~~~~-~~--~~~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACGR-DAEFHLAVSSTTK--TSD--VKEIFHQF-SP--FSYKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcCC-CCeEEEEEcCCCC--HHH--HHHHHHHh-cC--CCCCEEEEEe
Confidence 3457999999998642 23234555565554432 3367899998743 222 22333333 21 1256799999
Q ss_pred CCCCCC
Q 026970 147 GDELED 152 (230)
Q Consensus 147 ~D~~~~ 152 (230)
.|....
T Consensus 322 lDet~~ 327 (388)
T PRK12723 322 LDETTC 327 (388)
T ss_pred ccCCCc
Confidence 998754
No 368
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.35 E-value=5.4e-07 Score=69.11 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
-+++++|-+.+||||++..|+|... ...+..++|. ..+.......+-++.+.|.||+.+...+.....+++..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s--~vasyefttl-~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvia---- 132 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS--EVAAYEFTTL-TTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIA---- 132 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC--ccccccceeE-EEecceEeccccceeeecCcchhcccccCCCCccEEEE----
Confidence 4899999999999999999998753 2223333333 33333333478899999999998754433322232222
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc-ceEEEEEeCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF-DYMIVVFTGGD 148 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ivv~tk~D 148 (230)
..+.++.+++|+|+-.+++ ...+++.-.+.||-+.. .|--+.+.|-|
T Consensus 133 vartcnli~~vld~~kp~~--hk~~ie~eleg~girlnk~pp~i~~kkKd 180 (358)
T KOG1487|consen 133 VARTCNLIFIVLDVLKPLS--HKKIIEKELEGFGIRLNKQPPNIGTKKKD 180 (358)
T ss_pred EeecccEEEEEeeccCccc--HHHHHHHhhhcceeeccCCCCCccccccc
Confidence 2345578899999864544 45666666666774422 23334444444
No 369
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=9.4e-06 Score=75.14 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccc------CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCc----HHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS----EFV 89 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~----~~~ 89 (230)
+=.++||++|+||||++..- |...+... ....+ |..|. +.-+..-++|||.|-+-...+. ...
T Consensus 126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd-----wwf~deaVlIDtaGry~~q~s~~~~~~~~ 198 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD-----WWFTDEAVLIDTAGRYITQDSADEVDRAE 198 (1188)
T ss_pred CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC-----cccccceEEEcCCcceecccCcchhhHHH
Confidence 45689999999999988553 33221111 11111 33333 2234566899999987554322 223
Q ss_pred HHHHHHHHHhh--cCCccEEEEEEeCCCCCCHHH----------HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 90 GKEIVKCIGMA--KDGIHAVLVVFSVRSRFSQEE----------EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 90 ~~~~~~~~~~~--~~~~~~il~v~d~~~~~~~~~----------~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+..+...++.. ...+++|++.+++.+-.+... +.-++.+.+.++- ..|+++++||.|++.
T Consensus 199 W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~--~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 199 WLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA--RLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc--CCceEEEEecccccc
Confidence 44555555543 345799999998753322221 1224445555443 349999999999987
No 370
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.34 E-value=4e-06 Score=69.13 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=49.0
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 148 (230)
..+.++||.|-.. -++.+..++...-... .||-+|+|+|+. ..+.-....+.+.+..+ -.-+|+||.|
T Consensus 183 ~DvvIvDTAGRl~---ide~Lm~El~~Ik~~~--~P~E~llVvDam--~GQdA~~~A~aF~e~l~-----itGvIlTKlD 250 (451)
T COG0541 183 YDVVIVDTAGRLH---IDEELMDELKEIKEVI--NPDETLLVVDAM--IGQDAVNTAKAFNEALG-----ITGVILTKLD 250 (451)
T ss_pred CCEEEEeCCCccc---ccHHHHHHHHHHHhhc--CCCeEEEEEecc--cchHHHHHHHHHhhhcC-----CceEEEEccc
Confidence 4799999999764 3455666666654433 678999999986 33444555566666554 4668999999
Q ss_pred CCC
Q 026970 149 ELE 151 (230)
Q Consensus 149 ~~~ 151 (230)
--.
T Consensus 251 Gda 253 (451)
T COG0541 251 GDA 253 (451)
T ss_pred CCC
Confidence 653
No 371
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.29 E-value=2.4e-06 Score=72.51 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+..++|+|++|+||||++..|++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 468999999999999999998754
No 372
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.28 E-value=5.3e-07 Score=73.03 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=49.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCC
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 85 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~ 85 (230)
+..+..-|++||-+++||||+||+|-...+....+ .++-|...++... -+++++||+||+--+..+
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYItL----mkrIfLIDcPGvVyps~d 368 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYITL----MKRIFLIDCPGVVYPSSD 368 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHHH----HhceeEecCCCccCCCCC
Confidence 34566899999999999999999998887654432 4455666555533 357899999999866543
No 373
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.26 E-value=1.5e-05 Score=64.79 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=47.9
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHHhccc--c
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR--------FSQEEEAALHSLQTLFGKK--I 136 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------~~~~~~~~l~~l~~~~~~~--~ 136 (230)
++..+.++|++|.... +.....++.++++++||++.++- ........+..+...+..+ .
T Consensus 159 ~~~~~~~~DvgGq~~~-----------R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 159 KNLKFRMFDVGGQRSE-----------RKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred cceEEEEECCCCCccc-----------chhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 4567889999996431 13333566789999999998631 1122244445555544432 2
Q ss_pred cceEEEEEeCCCCCC
Q 026970 137 FDYMIVVFTGGDELE 151 (230)
Q Consensus 137 ~~~~ivv~tk~D~~~ 151 (230)
..|+++++||.|.+.
T Consensus 228 ~~pill~~NK~D~f~ 242 (317)
T cd00066 228 NTSIILFLNKKDLFE 242 (317)
T ss_pred CCCEEEEccChHHHH
Confidence 459999999999875
No 374
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.25 E-value=4.8e-06 Score=69.94 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=42.4
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 147 (230)
+..+.|+||||.... +.....++....... .++.+++|+|+.. ........+.+.+.++ ..-+|+||.
T Consensus 182 ~~DvVIIDTaGr~~~---d~~l~~eL~~i~~~~--~p~e~lLVvda~t--gq~~~~~a~~f~~~v~-----i~giIlTKl 249 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI---DEELMEELAAIKEIL--NPDEILLVVDAMT--GQDAVNTAKTFNERLG-----LTGVVLTKL 249 (428)
T ss_pred CCCEEEEeCCCcccc---CHHHHHHHHHHHHhh--CCceEEEEEeccc--hHHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence 356899999997642 233444444443322 4678999999862 2333334344443332 466889999
Q ss_pred CCC
Q 026970 148 DEL 150 (230)
Q Consensus 148 D~~ 150 (230)
|..
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 954
No 375
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.24 E-value=3.7e-05 Score=57.05 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+...++|+|++|+|||||++.|+|...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 446999999999999999999999753
No 376
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.23 E-value=5.2e-05 Score=54.41 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
+.-.++++|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34688999999999999999999975
No 377
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=4.9e-06 Score=58.10 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=69.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+++|--|+||+|++-.+--.++. ..-.|.......+.+ .+-++.++|.-|... |+-..
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-----ttkPtigfnve~v~y-KNLk~~vwdLggqtS-----------irPyW 79 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-----TTKPTIGFNVETVPY-KNLKFQVWDLGGQTS-----------IRPYW 79 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-----ccCCCCCcCcccccc-ccccceeeEccCccc-----------ccHHH
Confidence 4579999999999999977554322211 111122223333333 567889999887543 22344
Q ss_pred HhhcCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++...+++|||+|..++ ++.....+..++.+-- -....++++.||.|...
T Consensus 80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~e--Lq~a~llv~anKqD~~~ 133 (182)
T KOG0072|consen 80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEE--LQHAKLLVFANKQDYSG 133 (182)
T ss_pred HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHh--hcCceEEEEeccccchh
Confidence 4567788999999998643 4433444444444321 11135778899999764
No 378
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.19 E-value=8.1e-06 Score=58.82 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026970 21 TVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~ 41 (230)
+|+++|++|+||||++..+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999988854
No 379
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.17 E-value=6e-05 Score=55.79 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++++|++|+|||||++.|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999753
No 380
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.17 E-value=7e-06 Score=60.79 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=42.1
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 147 (230)
+..+.++||||.... .......+...... ..++.+++|+++... .........+.+..+ ...+|+||.
T Consensus 82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~~--~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~ 149 (173)
T cd03115 82 NFDVVIVDTAGRLQI---DENLMEELKKIKRV--VKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL 149 (173)
T ss_pred CCCEEEEECcccchh---hHHHHHHHHHHHhh--cCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence 456899999997532 12233333333221 246899999998522 222333333333333 366888999
Q ss_pred CCCCC
Q 026970 148 DELED 152 (230)
Q Consensus 148 D~~~~ 152 (230)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 98754
No 381
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.16 E-value=5.5e-05 Score=56.30 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999998754
No 382
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.15 E-value=3.2e-05 Score=63.46 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=48.1
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHHhccc--c
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR--------FSQEEEAALHSLQTLFGKK--I 136 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------~~~~~~~~l~~l~~~~~~~--~ 136 (230)
++..+.++|..|.... ++....++.++++++||+|.++- ........+..+...+..+ .
T Consensus 182 ~~~~~~~~DvgGqr~~-----------R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 182 KKLFFRMFDVGGQRSE-----------RKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred CCeEEEEEecCCchhh-----------hhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 4567889999885321 13333567789999999998731 1122344555555555433 3
Q ss_pred cceEEEEEeCCCCCC
Q 026970 137 FDYMIVVFTGGDELE 151 (230)
Q Consensus 137 ~~~~ivv~tk~D~~~ 151 (230)
..|+++++||.|.+.
T Consensus 251 ~~piil~~NK~D~~~ 265 (342)
T smart00275 251 NTSIILFLNKIDLFE 265 (342)
T ss_pred CCcEEEEEecHHhHH
Confidence 359999999999874
No 383
>PRK01889 GTPase RsgA; Reviewed
Probab=98.08 E-value=5.2e-06 Score=68.48 Aligned_cols=60 Identities=33% Similarity=0.457 Sum_probs=37.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (230)
..+++++|.+|+|||||+|.|+|......+.- ....|.......+. . ...++||||+..+
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~--~--~~~l~DtpG~~~~ 260 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLP--S--GGLLIDTPGMREL 260 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEec--C--CCeecCCCchhhh
Confidence 36899999999999999999998754332210 11122222222221 2 2368899998653
No 384
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.07 E-value=4.5e-06 Score=67.83 Aligned_cols=66 Identities=24% Similarity=0.340 Sum_probs=47.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE 87 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~ 87 (230)
....+++++|-+++||||+||+|........+. .+++|..-+... -+..+.|+|.||+.-...+..
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqeV~----Ldk~i~llDsPgiv~~~~~~~ 315 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQEVK----LDKKIRLLDSPGIVPPSIDEK 315 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhhee----ccCCceeccCCceeecCCCcc
Confidence 345899999999999999999999887655543 345555443332 356788999999986554433
No 385
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.06 E-value=5.9e-05 Score=55.31 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999854
No 386
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.05 E-value=0.00011 Score=55.41 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
+.-.++|+|++|+|||||++.|+|..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999975
No 387
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.04 E-value=0.00028 Score=51.88 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++++|++|+|||||++.|+|...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999999754
No 388
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.04 E-value=7.6e-05 Score=56.76 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=16.1
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 026970 21 TVVLVGRTGNGKSATGNSI 39 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l 39 (230)
-.+++|+||+||||..+.+
T Consensus 4 gqvVIGPPgSGKsTYc~g~ 22 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGM 22 (290)
T ss_pred ceEEEcCCCCCccchhhhH
Confidence 3578999999999997764
No 389
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.97 E-value=0.0003 Score=51.86 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
.+.-++|.||+|+||||+++.|+...
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 34788999999999999999998776
No 390
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.96 E-value=6.4e-05 Score=55.64 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
..-.++++|++|+|||||++.|+|...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 346899999999999999999999753
No 391
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=5e-05 Score=64.90 Aligned_cols=37 Identities=38% Similarity=0.411 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
...+.+++-+. ..+++++|++|+|||||++.|+|...
T Consensus 336 ~l~~l~~t~~~--g~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 336 ALSDLNLTIKA--GQLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred ccCCceeEecC--CcEEEEECCCCCCHHHHHHHHhCcCC
Confidence 33444444444 47999999999999999999999865
No 392
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=2.1e-05 Score=63.89 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=44.3
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 147 (230)
+..+.|+||.|-.. ....+.+++..+.... .+|.+|+|+|++ ....-....+.+++..+ -.-+++||.
T Consensus 183 ~fdvIIvDTSGRh~---qe~sLfeEM~~v~~ai--~Pd~vi~VmDas--iGQaae~Qa~aFk~~vd-----vg~vIlTKl 250 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHK---QEASLFEEMKQVSKAI--KPDEIIFVMDAS--IGQAAEAQARAFKETVD-----VGAVILTKL 250 (483)
T ss_pred CCcEEEEeCCCchh---hhHHHHHHHHHHHhhc--CCCeEEEEEecc--ccHhHHHHHHHHHHhhc-----cceEEEEec
Confidence 45799999999763 2344666666664433 579999999996 33334444444555433 344666666
Q ss_pred CCC
Q 026970 148 DEL 150 (230)
Q Consensus 148 D~~ 150 (230)
|-.
T Consensus 251 DGh 253 (483)
T KOG0780|consen 251 DGH 253 (483)
T ss_pred ccC
Confidence 654
No 393
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.95 E-value=9.5e-06 Score=60.99 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (230)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~ 46 (230)
..+.++..+.-..+ -.++++|++|+|||||+++|-+...+.
T Consensus 15 ~~VLkgi~l~v~~G--evv~iiGpSGSGKSTlLRclN~LE~~~ 55 (240)
T COG1126 15 KEVLKGISLSVEKG--EVVVIIGPSGSGKSTLLRCLNGLEEPD 55 (240)
T ss_pred eEEecCcceeEcCC--CEEEEECCCCCCHHHHHHHHHCCcCCC
Confidence 33444554544433 689999999999999999998876533
No 394
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.93 E-value=8.3e-06 Score=62.67 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccc
Q 026970 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (230)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~ 47 (230)
+-+++++.-..+ -.|.++|++|+|||||+|.+.|-..+..
T Consensus 18 vl~~i~L~v~~G--EfvsilGpSGcGKSTLLriiAGL~~p~~ 57 (248)
T COG1116 18 VLEDINLSVEKG--EFVAILGPSGCGKSTLLRLIAGLEKPTS 57 (248)
T ss_pred EeccceeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 445555554444 5899999999999999999999875443
No 395
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.93 E-value=2.8e-05 Score=58.12 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=47.7
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHH---HHHHHHHHHhcccccceEEEEEeC
Q 026970 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE---AALHSLQTLFGKKIFDYMIVVFTG 146 (230)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~---~~l~~l~~~~~~~~~~~~ivv~tk 146 (230)
.+.++|+||..+-- +.--+..++.+.+....-++ +++|+++.. -+....+ -.+..+..... ...|.|-|++|
T Consensus 99 dylifDcPGQIELy-tH~pVm~~iv~hl~~~~F~~-c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~--lE~P~INvlsK 173 (273)
T KOG1534|consen 99 DYLIFDCPGQIELY-THLPVMPQIVEHLKQWNFNV-CVVYLLDSQ-FLVDSTKFISGCLSALSAMIS--LEVPHINVLSK 173 (273)
T ss_pred CEEEEeCCCeeEEe-ecChhHHHHHHHHhcccCce-eEEEEeccc-hhhhHHHHHHHHHHHHHHHHH--hcCcchhhhhH
Confidence 58899999987522 22234556666655522223 456666653 2222221 12222222211 23488999999
Q ss_pred CCCCCCC-hhhHHHHhc
Q 026970 147 GDELEDN-DETLEDYLG 162 (230)
Q Consensus 147 ~D~~~~~-~~~~~~~l~ 162 (230)
+|++++. ...++.|+.
T Consensus 174 MDLlk~~~k~~l~~Fl~ 190 (273)
T KOG1534|consen 174 MDLLKDKNKKELERFLN 190 (273)
T ss_pred HHHhhhhhHHHHHHhcC
Confidence 9999742 255666665
No 396
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.91 E-value=6.9e-05 Score=52.46 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 026970 22 VVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 22 i~liG~~g~GKStlin~l~~~ 42 (230)
|++.|++|+|||++++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999854
No 397
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.90 E-value=7.9e-05 Score=55.05 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++++|++|+|||||++.|+|...
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999999854
No 398
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.89 E-value=0.00031 Score=51.08 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
...++|+|++|+|||||++.|.|..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999999874
No 399
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.88 E-value=4.8e-05 Score=65.72 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFK 46 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~ 46 (230)
.+-+|+++|++|+|||||++.|+|...+.
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~ 375 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPL 375 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccC
Confidence 44699999999999999999998876533
No 400
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=97.88 E-value=0.00011 Score=58.07 Aligned_cols=66 Identities=29% Similarity=0.277 Sum_probs=45.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCc-cccccCCCCccceeeeeEEEEe--eCCeEEEEEeCCCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDF 82 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~ 82 (230)
.+.-.|.++|+..+|||.|+|.|++.. .|..+....+.|.......... ..+..+.++||.|+.+.
T Consensus 19 ~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 19 QPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp SBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred CCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 445688999999999999999999753 4445554555566544433221 23467999999999883
No 401
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.86 E-value=1.3e-05 Score=62.56 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.+-++..+.-+. +..++++|++|+|||||+++|.|.-.
T Consensus 16 ~il~~ls~~i~~--G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 16 PILDDLSFSIPK--GEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred eEEecceEEecC--CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 344444444444 47899999999999999999998644
No 402
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=0.00037 Score=52.52 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
+...++|+|++|+|||||++.|+|..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999863
No 403
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=6.2e-05 Score=57.48 Aligned_cols=124 Identities=18% Similarity=0.161 Sum_probs=68.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.++|+++|...+||||+-+.......+... -.-..|.......+. ..-..+.+||.||..++-.+..+ ..
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneT-lflESTski~~d~is-~sfinf~v~dfPGQ~~~Fd~s~D--------~e 96 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTSKITRDHIS-NSFINFQVWDFPGQMDFFDPSFD--------YE 96 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCce-eEeeccCcccHhhhh-hhhcceEEeecCCccccCCCccC--------HH
Confidence 367999999999999987766544321110 000001111111111 01236789999998754322211 11
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
..+.++-+++||+|+.+..-.....+...+.+.+.-+...++-+.+.|.|.+.+
T Consensus 97 ~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 97 MIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred HHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 334566799999998633332223333334444444445567788999998864
No 404
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.83 E-value=0.00036 Score=53.50 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHh
Q 026970 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~ 40 (230)
.+++++.+... ...+++|.|++|+|||||++.+.
T Consensus 17 ~vpnd~~l~~~--~~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 17 FVPNDTEIGGG--GPSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEcceEEecCC--CceEEEEECCCCCChHHHHHHHH
Confidence 34555555332 23789999999999999999986
No 405
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.83 E-value=0.00029 Score=59.19 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970 5 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (230)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~ 46 (230)
.++++..+.-..+ -.=+|+|++|+|||||++.|.|...++
T Consensus 18 ~And~V~l~v~~G--eIHaLLGENGAGKSTLm~iL~G~~~P~ 57 (501)
T COG3845 18 VANDDVSLSVKKG--EIHALLGENGAGKSTLMKILFGLYQPD 57 (501)
T ss_pred EecCceeeeecCC--cEEEEeccCCCCHHHHHHHHhCcccCC
Confidence 3455555544443 466899999999999999999986533
No 406
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.82 E-value=2e-05 Score=57.79 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFK 46 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~ 46 (230)
.-+++++|++|+|||||+|.+.|-..+.
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~ 52 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPA 52 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCC
Confidence 3689999999999999999999876543
No 407
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.81 E-value=0.00012 Score=57.88 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=21.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~ 40 (230)
.++..+|++.|.||+|||||+..|.
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHH
Confidence 3455799999999999999998874
No 408
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.80 E-value=0.0003 Score=57.38 Aligned_cols=131 Identities=16% Similarity=0.182 Sum_probs=76.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCcccccc------------CCCCccceeeeeEEEEee----------------
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR------------ASSSGVTSTCEMQRTVLK---------------- 66 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~------------~~~~~~t~~~~~~~~~~~---------------- 66 (230)
..+....|+..|+-.+|||||.-+|+-...-+.. .-..+.+....+.-+-+.
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 3455689999999999999999887533221110 001122222222211111
Q ss_pred ------CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceE
Q 026970 67 ------DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 140 (230)
Q Consensus 67 ------~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (230)
.++-+.|+||-|+. .++...++..+ -..+|-.++++-+++..+.-.++-+-...-. .-|+
T Consensus 193 ~~vv~~aDklVsfVDtvGHE------pwLrTtirGL~---gqk~dYglLvVaAddG~~~~tkEHLgi~~a~-----~lPv 258 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHE------PWLRTTIRGLL---GQKVDYGLLVVAADDGVTKMTKEHLGIALAM-----ELPV 258 (527)
T ss_pred hHhhhhcccEEEEEecCCcc------HHHHHHHHHHh---ccccceEEEEEEccCCcchhhhHhhhhhhhh-----cCCE
Confidence 12357889999874 22222233322 1356889999999878776665555443332 2389
Q ss_pred EEEEeCCCCCCCChhhHHHHh
Q 026970 141 IVVFTGGDELEDNDETLEDYL 161 (230)
Q Consensus 141 ivv~tk~D~~~~~~~~~~~~l 161 (230)
++++||+|+.+ ++.+....
T Consensus 259 iVvvTK~D~~~--ddr~~~v~ 277 (527)
T COG5258 259 IVVVTKIDMVP--DDRFQGVV 277 (527)
T ss_pred EEEEEecccCc--HHHHHHHH
Confidence 99999999997 44444333
No 409
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.80 E-value=0.00041 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+++|+|++|+|||||++.+.+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 68999999999999999999843
No 410
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.78 E-value=2.9e-05 Score=58.31 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970 3 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 45 (230)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~ 45 (230)
|+.+.++..+...++ -.++++|++|+|||||++.|+|.-.+
T Consensus 13 Gr~ll~~vsl~~~pG--ev~ailGPNGAGKSTlLk~LsGel~p 53 (259)
T COG4559 13 GRRLLDGVSLDLRPG--EVLAILGPNGAGKSTLLKALSGELSP 53 (259)
T ss_pred cceeccCcceeccCC--cEEEEECCCCccHHHHHHHhhCccCC
Confidence 344555555544443 68899999999999999999998653
No 411
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.78 E-value=0.00047 Score=56.16 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=47.6
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC--C------CCHHHHHHHHHHHHHhccc--c
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS--R------FSQEEEAALHSLQTLFGKK--I 136 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~--~------~~~~~~~~l~~l~~~~~~~--~ 136 (230)
.+..+.++|.+|.-. +- +-...++.++++||||++.++ . .+....+.++.+...+..+ .
T Consensus 193 k~~~f~~~DvGGQRs----------eR-rKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRS----------ER-KKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred CCCceEEEeCCCcHH----------Hh-hhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 667899999999432 11 222248899999999998751 1 1111234444555544433 2
Q ss_pred cceEEEEEeCCCCCCC
Q 026970 137 FDYMIVVFTGGDELED 152 (230)
Q Consensus 137 ~~~~ivv~tk~D~~~~ 152 (230)
..++|+.+||.|++.+
T Consensus 262 ~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEE 277 (354)
T ss_pred cCcEEEEeecHHHHHH
Confidence 3479999999999863
No 412
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.77 E-value=2.3e-05 Score=55.50 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 35899999999999999999999864
No 413
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.77 E-value=2.8e-05 Score=46.77 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~ 40 (230)
...+|.|++|+||||++.++.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998875
No 414
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.77 E-value=0.00053 Score=46.41 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=53.2
Q ss_pred EEEE-cCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 22 VVLV-GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 22 i~li-G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
|+++ +..|+||||+.-.|...-....+ . ...........+..+.++|||+.... .... .
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~--~-----~~~l~d~d~~~~~D~IIiDtpp~~~~---------~~~~----~ 61 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAG--R-----RVLLVDLDLQFGDDYVVVDLGRSLDE---------VSLA----A 61 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCC--C-----cEEEEECCCCCCCCEEEEeCCCCcCH---------HHHH----H
Confidence 3444 57999999988776543211000 0 00111111112237899999986641 1112 2
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTG 146 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk 146 (230)
...+|.++++++.+ ..+... ...++.+.+. +.....++.+|+|+
T Consensus 62 l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 62 LDQADRVFLVTQQD-LPSIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHcCeEEEEecCC-hHHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 23458899998887 333333 4555555543 32212357777774
No 415
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=4.4e-05 Score=61.83 Aligned_cols=132 Identities=19% Similarity=0.151 Sum_probs=76.5
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCC------------CCcccee--eeeEEE-------Ee--------
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------------SSGVTST--CEMQRT-------VL-------- 65 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------------~~~~t~~--~~~~~~-------~~-------- 65 (230)
...-..+++++|.-.+|||||+--|+....-+..-. ..+.|.. .....+ .+
T Consensus 163 QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE 242 (591)
T KOG1143|consen 163 QQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE 242 (591)
T ss_pred ccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHH
Confidence 344558999999999999999988875543111000 0011110 000000 00
Q ss_pred ---eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEE
Q 026970 66 ---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142 (230)
Q Consensus 66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~iv 142 (230)
....-++|+|.+|........ ...+.. --+|..++|++++..++...++-+..+..+ ..|+++
T Consensus 243 i~e~SSKlvTfiDLAGh~kY~~TT-------i~gLtg--Y~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL-----~iPfFv 308 (591)
T KOG1143|consen 243 IVEKSSKLVTFIDLAGHAKYQKTT-------IHGLTG--YTPHFACLVVSADRGITWTTREHLGLIAAL-----NIPFFV 308 (591)
T ss_pred HHhhhcceEEEeecccchhhheee-------eeeccc--CCCceEEEEEEcCCCCccccHHHHHHHHHh-----CCCeEE
Confidence 012357889988865321110 011111 245888999999878887777777766664 348999
Q ss_pred EEeCCCCCCCChhhHHHHhc
Q 026970 143 VFTGGDELEDNDETLEDYLG 162 (230)
Q Consensus 143 v~tk~D~~~~~~~~~~~~l~ 162 (230)
++||+|+.. ...++..++
T Consensus 309 lvtK~Dl~~--~~~~~~tv~ 326 (591)
T KOG1143|consen 309 LVTKMDLVD--RQGLKKTVK 326 (591)
T ss_pred EEEeecccc--chhHHHHHH
Confidence 999999987 444444333
No 416
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.74 E-value=2.1e-05 Score=69.41 Aligned_cols=130 Identities=17% Similarity=0.130 Sum_probs=82.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceee---------------------------------------
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC--------------------------------------- 58 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 58 (230)
.-+.|+++|..++||||.++++.|..+.+-+.. .+|..+
T Consensus 28 ~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g--ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~ 105 (657)
T KOG0446|consen 28 PLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG--IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRS 105 (657)
T ss_pred cCCceEEecCCCCcchhHHHHhhcccccccccc--ceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHh
Confidence 447999999999999999999999765221110 001100
Q ss_pred ----------------eeEEEEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHH
Q 026970 59 ----------------EMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120 (230)
Q Consensus 59 ----------------~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~ 120 (230)
....+...+-..++++|.||+..-... .+.+..++...+..+....+.+++.+.+. ..+..
T Consensus 106 et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~a-n~d~a 184 (657)
T KOG0446|consen 106 ETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPA-NSDIA 184 (657)
T ss_pred hHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccch-hhhhh
Confidence 000011112236899999999864332 24567777777777888888888877654 23333
Q ss_pred HHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 121 ~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
....++..++. .+....++.|+||.|.++.
T Consensus 185 ts~alkiarev--Dp~g~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 185 TSPALVVAREV--DPGGSRTLEVITKFDFMDK 214 (657)
T ss_pred cCHHHHHHHhh--CCCccchhHHhhhHHhhhc
Confidence 34555655554 2234479999999998864
No 417
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.73 E-value=3.6e-05 Score=58.89 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAF 45 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~ 45 (230)
-.|+++|++|||||||+|.|.+-+.+
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 58999999999999999999887654
No 418
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.73 E-value=3.3e-05 Score=58.09 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
-.++|+|++|+|||||++.|+|...
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999999753
No 419
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.71 E-value=5.6e-06 Score=63.25 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.+++|||+|+|||||+|.|+|.-.
T Consensus 30 Gei~~LIGPNGAGKTTlfNlitG~~~ 55 (250)
T COG0411 30 GEIVGLIGPNGAGKTTLFNLITGFYK 55 (250)
T ss_pred CeEEEEECCCCCCceeeeeeeccccc
Confidence 36899999999999999999998754
No 420
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.71 E-value=4.2e-05 Score=58.47 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999999753
No 421
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.69 E-value=4.5e-05 Score=58.47 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 36899999999999999999999754
No 422
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=4.8e-05 Score=57.21 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
..+..+.++.-+.+ ...+++||+|+|||||+++|-.
T Consensus 20 ~~aL~~i~l~i~~~--~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 20 KHALKDINLDIPKN--KVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred hhhhccCceeccCC--ceEEEECCCCcCHHHHHHHHHh
Confidence 34455666665554 6889999999999999988743
No 423
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.68 E-value=4.7e-05 Score=59.24 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999754
No 424
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.67 E-value=5e-05 Score=58.37 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 346899999999999999999999854
No 425
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=4e-05 Score=60.45 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
....+|+-+|+-..||||+.+++.|..
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~ 62 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVH 62 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccce
Confidence 345899999999999999999998864
No 426
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.66 E-value=4.5e-05 Score=59.28 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
+-++.++.-+.+ -.++++|++|+|||||+++++|.-
T Consensus 19 vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 19 VLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred eeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444443333 688999999999999999999953
No 427
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.66 E-value=5.2e-05 Score=57.70 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999999753
No 428
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.65 E-value=0.00028 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~ 42 (230)
+|+++|..|+|||+|+..+...
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcC
Confidence 6899999999999999998543
No 429
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.65 E-value=0.0021 Score=48.78 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~ 40 (230)
.+++|.|++|+|||||++.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999999987
No 430
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.65 E-value=5.6e-05 Score=57.93 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999999753
No 431
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.65 E-value=5.5e-05 Score=58.07 Aligned_cols=27 Identities=41% Similarity=0.503 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999753
No 432
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=5.7e-05 Score=57.87 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999999753
No 433
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=5.8e-05 Score=58.10 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999999743
No 434
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.64 E-value=4.9e-05 Score=56.37 Aligned_cols=24 Identities=38% Similarity=0.320 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~ 41 (230)
+.-+++|+|++|+|||||++.+++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346999999999999999999974
No 435
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=6.6e-05 Score=62.60 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=47.7
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce--EEEEE
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY--MIVVF 144 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~--~ivv~ 144 (230)
++..++++||+|-.. .+.-+...+.+.+.. ..+|.|++|=.+- ...+....+..+.+.++....++ =-+++
T Consensus 465 ~gfDVvLiDTAGR~~---~~~~lm~~l~k~~~~--~~pd~i~~vgeal--vg~dsv~q~~~fn~al~~~~~~r~id~~~l 537 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMH---NNAPLMTSLAKLIKV--NKPDLILFVGEAL--VGNDSVDQLKKFNRALADHSTPRLIDGILL 537 (587)
T ss_pred cCCCEEEEecccccc---CChhHHHHHHHHHhc--CCCceEEEehhhh--hCcHHHHHHHHHHHHHhcCCCccccceEEE
Confidence 456799999999753 334445555555543 4679999997653 22223344444555555433222 34889
Q ss_pred eCCCCCCC
Q 026970 145 TGGDELED 152 (230)
Q Consensus 145 tk~D~~~~ 152 (230)
||+|...+
T Consensus 538 tk~dtv~d 545 (587)
T KOG0781|consen 538 TKFDTVDD 545 (587)
T ss_pred Eeccchhh
Confidence 99998863
No 436
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=5.7e-05 Score=58.18 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999999753
No 437
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00096 Score=55.62 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
-+|+++|++|+|||||+..|+|.-.
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCC
Confidence 5899999999999999999999754
No 438
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.63 E-value=0.00084 Score=47.80 Aligned_cols=105 Identities=17% Similarity=0.113 Sum_probs=54.6
Q ss_pred EEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcC
Q 026970 23 VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD 102 (230)
Q Consensus 23 ~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (230)
+.-|..|+||||+--.+...-. ..+.. ..-.+....... -...+.++|||+..+ . .... ...
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~--~~~vd~D~~~~~--~~yd~VIiD~p~~~~-----~----~~~~----~l~ 65 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKR--VLLLDADLGLAN--LDYDYIIIDTGAGIS-----D----NVLD----FFL 65 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCc--EEEEECCCCCCC--CCCCEEEEECCCCCC-----H----HHHH----HHH
Confidence 3447899999999665542211 00000 000000000000 015789999998543 1 1112 233
Q ss_pred CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970 103 GIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (230)
Q Consensus 103 ~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 149 (230)
.+|.++++++.+ ..+... ...++.+.+..+ ..++.+|+|+.+.
T Consensus 66 ~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~---~~~~~lVvN~~~~ 109 (139)
T cd02038 66 AADEVIVVTTPE-PTSITDAYALIKKLAKQLR---VLNFRVVVNRAES 109 (139)
T ss_pred hCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcC---CCCEEEEEeCCCC
Confidence 458999999886 333222 445555554322 2368899999864
No 439
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.63 E-value=6.4e-05 Score=57.90 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999854
No 440
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.63 E-value=6.5e-05 Score=57.48 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++-.++|+|++|+|||||++.|+|...
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999753
No 441
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.62 E-value=6.3e-05 Score=57.27 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999999753
No 442
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=6e-05 Score=57.64 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.++|+|++|+|||||++.|+|...
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 899999999999999999999753
No 443
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=6.8e-05 Score=57.31 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999753
No 444
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.61 E-value=6.9e-05 Score=56.61 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++-.++|+|++|+|||||++.|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999999754
No 445
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.61 E-value=6.9e-05 Score=57.40 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 346899999999999999999999754
No 446
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.61 E-value=6.7e-05 Score=57.47 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999999753
No 447
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.60 E-value=7.2e-05 Score=58.06 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999999754
No 448
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.60 E-value=6.9e-05 Score=60.25 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
-.++|+|++|||||||++.|+|...
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcC
Confidence 6899999999999999999999854
No 449
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.60 E-value=6.9e-05 Score=60.81 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFK 46 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~ 46 (230)
-.++|+|++|+|||||++.|+|-..+.
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~~~ 56 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEEPT 56 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 578999999999999999999986533
No 450
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.59 E-value=5e-05 Score=61.41 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+-.++|+|++|+|||||++.|+|...
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999999754
No 451
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=7.5e-05 Score=58.01 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346999999999999999999999854
No 452
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.59 E-value=7.8e-05 Score=57.45 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|.|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347899999999999999999998754
No 453
>PRK13695 putative NTPase; Provisional
Probab=97.59 E-value=0.00076 Score=49.92 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~ 42 (230)
+|+|.|.+|+|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999987643
No 454
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.59 E-value=7.7e-05 Score=57.42 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+-.++|+|++|+|||||++.|+|...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999999753
No 455
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=7.6e-05 Score=58.86 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999999754
No 456
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.59 E-value=8.2e-05 Score=56.33 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999753
No 457
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.59 E-value=7.7e-05 Score=57.71 Aligned_cols=27 Identities=41% Similarity=0.567 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
..-.++|+|++|+|||||++.|+|...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346999999999999999999999753
No 458
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.59 E-value=8e-05 Score=56.49 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346999999999999999999999754
No 459
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.58 E-value=6.8e-05 Score=56.93 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347999999999999999999999754
No 460
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.58 E-value=8.1e-05 Score=57.00 Aligned_cols=26 Identities=38% Similarity=0.495 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999999753
No 461
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.58 E-value=0.003 Score=46.55 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
..-.|.+||.+|+|||||+++|--.
T Consensus 31 ~GdVisIIGsSGSGKSTfLRCiN~L 55 (256)
T COG4598 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (256)
T ss_pred CCCEEEEecCCCCchhHHHHHHHhh
Confidence 3468999999999999999998543
No 462
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.58 E-value=8.4e-05 Score=56.70 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++-.++|+|++|+|||||++.|+|...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999754
No 463
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.58 E-value=7.9e-05 Score=58.03 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++-.++|+|++|+|||||++.|+|...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 346899999999999999999999754
No 464
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.58 E-value=8.4e-05 Score=55.48 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++++|++|+|||||++.|+|...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999999854
No 465
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=7.9e-05 Score=57.14 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-+|+++|++|+|||||++.|.|.-.
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi~~ 78 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGIYK 78 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCccC
Confidence 446999999999999999999999854
No 466
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.57 E-value=7.9e-05 Score=58.25 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 36899999999999999999998753
No 467
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.57 E-value=6.4e-05 Score=57.32 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
..++.++.-+.. -.|+++|++|+|||||+++|.|..
T Consensus 19 aL~~Vnl~I~~G--E~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 19 ALKDVNLEINQG--EMVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred eeeeEeEEeCCC--cEEEEECCCCCcHHHHHHHHhccc
Confidence 334444444443 689999999999999999998853
No 468
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.57 E-value=6.5e-05 Score=58.08 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 36899999999999999999999753
No 469
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=7.4e-05 Score=59.46 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+-.++|+|++|+|||||++.|+|...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 36899999999999999999999754
No 470
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.57 E-value=8.6e-05 Score=58.22 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
..-.++|+|++|+|||||++.|+|...
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 456899999999999999999999754
No 471
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=8.4e-05 Score=58.01 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+-.++|+|++|+|||||++.|+|...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999999754
No 472
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.57 E-value=0.00069 Score=55.11 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+..+|.|--|||||||+|.++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 468889999999999999999854
No 473
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.56 E-value=9.1e-05 Score=56.33 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
..-.+.++|++|+|||||+++|+|...
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999754
No 474
>PRK10908 cell division protein FtsE; Provisional
Probab=97.56 E-value=8.7e-05 Score=57.22 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+...++|+|++|+|||||++.|+|...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999754
No 475
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=8.5e-05 Score=57.74 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999999753
No 476
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.56 E-value=9e-05 Score=56.53 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 346899999999999999999999753
No 477
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=9e-05 Score=57.89 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|.|...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999754
No 478
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.56 E-value=8.7e-05 Score=57.76 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 346899999999999999999999753
No 479
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.55 E-value=9.7e-05 Score=56.22 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 336899999999999999999999854
No 480
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.55 E-value=9.1e-05 Score=57.36 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++-.++|+|++|+|||||++.|+|...
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 346999999999999999999999853
No 481
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.55 E-value=0.0001 Score=54.93 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999753
No 482
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.55 E-value=7.5e-05 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~ 42 (230)
+|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 483
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.55 E-value=9.6e-05 Score=57.30 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346999999999999999999999754
No 484
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.0017 Score=46.73 Aligned_cols=117 Identities=12% Similarity=0.183 Sum_probs=59.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc---cccccCCCCccceeeeeEEEEeeCC--eEEEEEeCC----------CCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR---AFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTP----------GLFDFS 83 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~---~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtP----------G~~~~~ 83 (230)
..+|++.|+||+||||++..+...- .+..+ +..|..... ++ .-+.++|.. |+..+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg---Gf~t~EVR~------gGkR~GF~Ivdl~tg~~~~la~~~~~~~r 75 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG---GFITPEVRE------GGKRIGFKIVDLATGEEGILARVGFSRPR 75 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceee---eEEeeeeec------CCeEeeeEEEEccCCceEEEEEcCCCCcc
Confidence 4799999999999999988775321 11110 001111100 11 123344433 112111
Q ss_pred C-----CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970 84 A-----GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (230)
Q Consensus 84 ~-----~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 148 (230)
. ..+...+-...++...+..+|+++ +-.+. ++..-...+.+.+.+.+... +|.+.++-+-+
T Consensus 76 vGkY~V~v~~le~i~~~al~rA~~~aDvII-IDEIG-pMElks~~f~~~ve~vl~~~--kpliatlHrrs 141 (179)
T COG1618 76 VGKYGVNVEGLEEIAIPALRRALEEADVII-IDEIG-PMELKSKKFREAVEEVLKSG--KPLIATLHRRS 141 (179)
T ss_pred cceEEeeHHHHHHHhHHHHHHHhhcCCEEE-Eeccc-chhhccHHHHHHHHHHhcCC--CcEEEEEeccc
Confidence 1 122233344556666666666543 33334 56555667777777776543 35666655443
No 485
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=9.5e-05 Score=57.25 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 36899999999999999999999864
No 486
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.54 E-value=8.2e-05 Score=57.57 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
+.-.++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999999975
No 487
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.54 E-value=9.7e-05 Score=57.32 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999999854
No 488
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=9.8e-05 Score=56.46 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446899999999999999999999854
No 489
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.54 E-value=9.8e-05 Score=56.74 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 36899999999999999999999753
No 490
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.54 E-value=0.00091 Score=43.86 Aligned_cols=68 Identities=21% Similarity=0.266 Sum_probs=41.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhc
Q 026970 22 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 101 (230)
Q Consensus 22 i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~ 101 (230)
+++.|..|+||||+...+...-. .. .. .. ... + .+.++|+|+..+..... .....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~---~~-g~------~v--~~~-~--d~iivD~~~~~~~~~~~----------~~~~~ 56 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA---KR-GK------RV--LLI-D--DYVLIDTPPGLGLLVLL----------CLLAL 56 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---HC-CC------eE--EEE-C--CEEEEeCCCCccchhhh----------hhhhh
Confidence 67889999999999988875421 00 00 00 111 1 67899999976532100 11233
Q ss_pred CCccEEEEEEeCC
Q 026970 102 DGIHAVLVVFSVR 114 (230)
Q Consensus 102 ~~~~~il~v~d~~ 114 (230)
..+|.++++++..
T Consensus 57 ~~~~~vi~v~~~~ 69 (99)
T cd01983 57 LAADLVIIVTTPE 69 (99)
T ss_pred hhCCEEEEecCCc
Confidence 4567888888776
No 491
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=9.6e-05 Score=57.78 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999754
No 492
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.54 E-value=0.00012 Score=52.02 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 026970 22 VVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 22 i~liG~~g~GKStlin~l~~~ 42 (230)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 493
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.53 E-value=0.0001 Score=58.14 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAF 45 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~ 45 (230)
.+.-.++|+|++|+|||||++.|+|...+
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 34569999999999999999999998643
No 494
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00015 Score=53.88 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~ 43 (230)
-.|+++|++|+|||||+|.+.|-.
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcCc
Confidence 578899999999999999999874
No 495
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.53 E-value=9.8e-05 Score=58.29 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+-.++|+|++|+|||||++.|+|...
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999999753
No 496
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.0001 Score=57.53 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 46899999999999999999998753
No 497
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.52 E-value=0.00011 Score=54.60 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++++|++|+|||||++.|+|...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999999854
No 498
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.52 E-value=0.0001 Score=58.76 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++-.++|+|++|+|||||++.|+|...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999999754
No 499
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.00011 Score=57.41 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+-.++|+|++|+|||||++.|+|...
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999999753
No 500
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.51 E-value=0.00011 Score=56.50 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 346899999999999999999999854
Done!