Query 026970
Match_columns 230
No_of_seqs 265 out of 2257
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 04:22:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxx_A GTPase IMAP family memb 99.9 1.7E-26 5.7E-31 179.2 18.1 184 16-203 26-234 (239)
2 3lxw_A GTPase IMAP family memb 99.9 4.3E-26 1.5E-30 177.6 19.5 205 15-221 17-246 (247)
3 2xtp_A GTPase IMAP family memb 99.9 7.2E-23 2.5E-27 160.6 20.9 135 15-151 18-153 (260)
4 3def_A T7I23.11 protein; chlor 99.9 1.7E-20 5.8E-25 147.3 16.6 142 18-163 35-177 (262)
5 1h65_A Chloroplast outer envel 99.9 2.8E-20 9.6E-25 146.7 16.3 142 18-163 38-180 (270)
6 4dhe_A Probable GTP-binding pr 99.8 6.3E-19 2.2E-23 134.8 15.3 131 16-151 26-158 (223)
7 1wf3_A GTP-binding protein; GT 99.8 1.6E-18 5.5E-23 138.4 17.4 125 19-151 7-131 (301)
8 3iev_A GTP-binding protein ERA 99.8 7.3E-19 2.5E-23 141.0 14.6 128 15-150 6-135 (308)
9 1svi_A GTP-binding protein YSX 99.8 6.9E-18 2.4E-22 126.2 16.5 125 17-151 21-148 (195)
10 2qu8_A Putative nucleolar GTP- 99.8 2E-17 6.8E-22 127.0 15.2 136 11-151 21-156 (228)
11 2lkc_A Translation initiation 99.8 2.4E-17 8.1E-22 121.4 15.0 126 17-161 6-131 (178)
12 3pqc_A Probable GTP-binding pr 99.8 7E-17 2.4E-21 120.5 17.0 126 16-151 20-147 (195)
13 2dyk_A GTP-binding protein; GT 99.8 2.1E-17 7.1E-22 119.6 13.4 121 20-151 2-122 (161)
14 2gj8_A MNME, tRNA modification 99.7 2.7E-17 9.1E-22 120.9 13.3 127 18-151 3-129 (172)
15 3t5d_A Septin-7; GTP-binding p 99.7 4E-17 1.4E-21 128.8 14.3 128 18-151 7-158 (274)
16 1mky_A Probable GTP-binding pr 99.7 3.4E-17 1.2E-21 137.4 13.9 123 20-151 2-124 (439)
17 3tw8_B RAS-related protein RAB 99.7 6E-17 2.1E-21 119.4 13.7 118 17-151 7-127 (181)
18 2gf9_A RAS-related protein RAB 99.7 9.9E-17 3.4E-21 119.5 12.8 127 10-151 13-141 (189)
19 2bov_A RAla, RAS-related prote 99.7 9.8E-17 3.3E-21 120.9 12.3 120 16-151 11-133 (206)
20 3tkl_A RAS-related protein RAB 99.7 1.3E-16 4.5E-21 119.2 12.8 120 17-152 14-136 (196)
21 1z0f_A RAB14, member RAS oncog 99.7 5.8E-17 2E-21 119.2 10.7 120 17-151 13-134 (179)
22 2fg5_A RAB-22B, RAS-related pr 99.7 4.5E-17 1.5E-21 121.7 10.2 124 14-151 18-142 (192)
23 2bcg_Y Protein YP2, GTP-bindin 99.7 3.4E-16 1.2E-20 118.1 15.0 118 18-151 7-127 (206)
24 1z08_A RAS-related protein RAB 99.7 7.6E-17 2.6E-21 117.7 11.0 119 18-151 5-125 (170)
25 2efe_B Small GTP-binding prote 99.7 7.5E-17 2.6E-21 119.0 11.0 120 17-151 10-131 (181)
26 4dkx_A RAS-related protein RAB 99.7 4.1E-17 1.4E-21 124.2 9.4 118 18-152 12-133 (216)
27 2bme_A RAB4A, RAS-related prot 99.7 1.4E-16 4.9E-21 118.1 12.1 119 17-151 8-129 (186)
28 4bas_A ADP-ribosylation factor 99.7 1.6E-16 5.4E-21 119.1 12.3 124 13-151 11-141 (199)
29 2hjg_A GTP-binding protein ENG 99.7 1.2E-16 4E-21 134.1 12.7 128 17-153 173-302 (436)
30 3llu_A RAS-related GTP-binding 99.7 1.9E-16 6.4E-21 118.8 12.5 129 14-151 15-143 (196)
31 1z0j_A RAB-22, RAS-related pro 99.7 4.8E-17 1.6E-21 118.7 9.0 119 18-151 5-125 (170)
32 1upt_A ARL1, ADP-ribosylation 99.7 5.4E-16 1.9E-20 113.2 14.5 116 17-151 5-122 (171)
33 3clv_A RAB5 protein, putative; 99.7 3.2E-16 1.1E-20 117.6 13.7 113 18-148 6-158 (208)
34 1ek0_A Protein (GTP-binding pr 99.7 5.1E-17 1.7E-21 118.5 8.9 118 19-151 3-122 (170)
35 1r2q_A RAS-related protein RAB 99.7 7.6E-17 2.6E-21 117.5 9.8 119 18-151 5-125 (170)
36 2erx_A GTP-binding protein DI- 99.7 1E-16 3.5E-21 117.0 10.5 118 19-151 3-123 (172)
37 4dcu_A GTP-binding protein ENG 99.7 2.7E-16 9.2E-21 132.6 14.4 130 17-154 193-323 (456)
38 2il1_A RAB12; G-protein, GDP, 99.7 1E-16 3.5E-21 119.8 10.1 124 12-151 19-145 (192)
39 1zbd_A Rabphilin-3A; G protein 99.7 2.4E-16 8.2E-21 118.6 11.9 118 19-151 8-127 (203)
40 1ksh_A ARF-like protein 2; sma 99.7 1E-15 3.5E-20 113.5 15.1 116 17-151 16-133 (186)
41 3iby_A Ferrous iron transport 99.7 1.8E-16 6.2E-21 123.7 11.4 121 20-151 2-124 (256)
42 4dcu_A GTP-binding protein ENG 99.7 3.7E-17 1.3E-21 137.8 7.9 124 18-151 22-145 (456)
43 2oil_A CATX-8, RAS-related pro 99.7 9.9E-17 3.4E-21 119.8 9.4 119 18-151 24-144 (193)
44 1ky3_A GTP-binding protein YPT 99.7 1.5E-16 5.3E-21 117.3 10.4 122 17-151 6-132 (182)
45 2q3h_A RAS homolog gene family 99.7 4.5E-16 1.6E-20 116.9 13.1 123 11-151 12-138 (201)
46 3t5g_A GTP-binding protein RHE 99.7 1.1E-15 3.8E-20 112.8 15.0 118 18-151 5-125 (181)
47 2hjg_A GTP-binding protein ENG 99.7 5.4E-17 1.8E-21 136.1 8.7 122 20-151 4-125 (436)
48 2h57_A ADP-ribosylation factor 99.7 2.4E-16 8.2E-21 117.5 11.3 121 16-151 18-140 (190)
49 3cph_A RAS-related protein SEC 99.7 3.4E-16 1.2E-20 118.6 12.3 119 16-150 17-138 (213)
50 2h17_A ADP-ribosylation factor 99.7 2.5E-16 8.7E-21 116.5 11.3 118 16-151 18-136 (181)
51 3i8s_A Ferrous iron transport 99.7 3.7E-16 1.3E-20 123.3 12.7 122 19-151 3-126 (274)
52 4dsu_A GTPase KRAS, isoform 2B 99.7 4.6E-16 1.6E-20 115.5 12.5 118 18-151 3-123 (189)
53 2g6b_A RAS-related protein RAB 99.7 6.6E-16 2.3E-20 113.8 13.0 121 17-152 8-131 (180)
54 3oes_A GTPase rhebl1; small GT 99.7 5.5E-16 1.9E-20 116.6 12.7 121 15-151 20-143 (201)
55 2fu5_C RAS-related protein RAB 99.7 1.3E-16 4.4E-21 118.1 9.1 118 18-151 7-127 (183)
56 2fh5_B SR-beta, signal recogni 99.7 6.7E-16 2.3E-20 117.2 13.1 117 18-151 6-129 (214)
57 1z2a_A RAS-related protein RAB 99.7 3.1E-16 1.1E-20 114.1 10.8 118 18-151 4-123 (168)
58 1zd9_A ADP-ribosylation factor 99.7 1.5E-15 5E-20 113.1 14.6 117 17-151 20-138 (188)
59 1g16_A RAS-related protein SEC 99.7 2.1E-16 7E-21 115.3 9.8 117 19-150 3-121 (170)
60 2hxs_A RAB-26, RAS-related pro 99.7 2E-16 6.8E-21 116.4 9.6 122 17-151 4-129 (178)
61 2y8e_A RAB-protein 6, GH09086P 99.7 2.4E-16 8.2E-21 115.9 9.8 117 19-151 14-133 (179)
62 2p5s_A RAS and EF-hand domain 99.7 1.1E-16 3.7E-21 120.3 8.1 119 17-150 26-146 (199)
63 2nzj_A GTP-binding protein REM 99.7 1E-15 3.5E-20 112.2 13.2 120 18-151 3-125 (175)
64 2fn4_A P23, RAS-related protei 99.7 5.3E-16 1.8E-20 114.2 11.6 121 15-151 5-128 (181)
65 2ew1_A RAS-related protein RAB 99.7 6.2E-16 2.1E-20 116.5 12.1 118 18-151 25-145 (201)
66 1zj6_A ADP-ribosylation factor 99.7 1.6E-15 5.5E-20 112.7 14.2 117 17-151 14-131 (187)
67 2a5j_A RAS-related protein RAB 99.7 3.9E-16 1.3E-20 116.4 10.9 119 17-151 19-140 (191)
68 2gf0_A GTP-binding protein DI- 99.7 3.4E-16 1.2E-20 117.3 10.5 119 18-151 7-128 (199)
69 1vg8_A RAS-related protein RAB 99.7 4E-16 1.4E-20 117.6 11.0 122 17-151 6-131 (207)
70 3r7w_A Gtpase1, GTP-binding pr 99.7 5.3E-16 1.8E-20 124.3 12.2 125 19-151 3-129 (307)
71 1r8s_A ADP-ribosylation factor 99.7 7.2E-16 2.5E-20 111.9 11.9 113 20-151 1-115 (164)
72 1wms_A RAB-9, RAB9, RAS-relate 99.7 3.5E-16 1.2E-20 115.0 10.3 120 18-151 6-130 (177)
73 1z06_A RAS-related protein RAB 99.7 5.2E-16 1.8E-20 115.5 11.3 120 17-151 18-141 (189)
74 3t1o_A Gliding protein MGLA; G 99.7 1.2E-15 4.1E-20 114.0 13.3 136 17-163 12-162 (198)
75 1moz_A ARL1, ADP-ribosylation 99.7 1.4E-15 4.7E-20 112.4 13.5 116 17-151 16-133 (183)
76 3gee_A MNME, tRNA modification 99.7 5.7E-16 1.9E-20 130.6 12.8 126 19-153 233-359 (476)
77 1u8z_A RAS-related protein RAL 99.7 4.2E-16 1.4E-20 113.3 10.5 118 18-151 3-123 (168)
78 2x77_A ADP-ribosylation factor 99.7 1.6E-15 5.5E-20 112.8 13.8 116 17-151 20-137 (189)
79 1c1y_A RAS-related protein RAP 99.7 4.3E-16 1.5E-20 113.3 10.4 117 19-151 3-122 (167)
80 4djt_A GTP-binding nuclear pro 99.7 2.4E-16 8.2E-21 120.0 9.3 120 17-151 9-131 (218)
81 3q72_A GTP-binding protein RAD 99.7 6.8E-16 2.3E-20 112.2 11.2 119 19-152 2-121 (166)
82 1m2o_B GTP-binding protein SAR 99.7 2.4E-15 8.2E-20 112.2 14.4 116 18-151 22-138 (190)
83 1kao_A RAP2A; GTP-binding prot 99.7 6.6E-16 2.3E-20 112.1 11.0 117 19-151 3-122 (167)
84 3kkq_A RAS-related protein M-R 99.7 7.3E-16 2.5E-20 114.0 11.3 124 12-151 11-137 (183)
85 2ged_A SR-beta, signal recogni 99.7 6.7E-16 2.3E-20 115.2 11.2 120 17-151 46-170 (193)
86 3bc1_A RAS-related protein RAB 99.7 1.2E-15 4.3E-20 113.5 12.6 121 17-151 9-141 (195)
87 1ega_A Protein (GTP-binding pr 99.7 4.5E-16 1.5E-20 124.3 10.8 122 19-151 8-130 (301)
88 2a9k_A RAS-related protein RAL 99.7 5.8E-16 2E-20 114.7 10.6 118 18-151 17-137 (187)
89 2hup_A RAS-related protein RAB 99.7 6.5E-16 2.2E-20 116.3 10.9 118 18-151 28-148 (201)
90 3cpj_B GTP-binding protein YPT 99.7 1.1E-15 3.8E-20 116.9 12.3 119 17-151 11-132 (223)
91 3k53_A Ferrous iron transport 99.7 2E-15 6.8E-20 118.9 14.0 120 19-150 3-122 (271)
92 2b6h_A ADP-ribosylation factor 99.7 1.5E-15 5E-20 113.6 12.4 116 17-151 27-144 (192)
93 1jwy_B Dynamin A GTPase domain 99.7 5.1E-15 1.7E-19 118.9 16.3 130 18-152 23-213 (315)
94 1fzq_A ADP-ribosylation factor 99.7 1.8E-15 6.1E-20 112.0 12.6 116 17-151 14-131 (181)
95 3q3j_B RHO-related GTP-binding 99.7 1.2E-15 4.1E-20 116.0 11.9 119 15-151 23-145 (214)
96 2ce2_X GTPase HRAS; signaling 99.7 1.3E-15 4.4E-20 110.3 11.6 117 19-151 3-122 (166)
97 2atx_A Small GTP binding prote 99.7 1.3E-15 4.3E-20 113.9 11.8 117 17-151 16-136 (194)
98 1f6b_A SAR1; gtpases, N-termin 99.7 1.1E-15 3.8E-20 114.8 11.5 128 17-162 23-152 (198)
99 3a1s_A Iron(II) transport prot 99.6 3.3E-15 1.1E-19 116.7 14.5 120 19-151 5-124 (258)
100 3dz8_A RAS-related protein RAB 99.6 2.8E-16 9.6E-21 117.2 8.0 121 17-151 21-142 (191)
101 4gzl_A RAS-related C3 botulinu 99.6 6.8E-16 2.3E-20 116.5 10.2 118 16-151 27-148 (204)
102 2o52_A RAS-related protein RAB 99.6 5.4E-16 1.8E-20 116.6 9.6 119 17-151 23-144 (200)
103 2wji_A Ferrous iron transport 99.6 2.9E-15 9.9E-20 109.2 13.2 120 19-151 3-122 (165)
104 2yc2_C IFT27, small RAB-relate 99.6 1.6E-15 5.5E-20 114.3 12.1 121 18-151 19-146 (208)
105 1x3s_A RAS-related protein RAB 99.6 2.7E-16 9.3E-21 117.3 7.6 121 17-151 13-135 (195)
106 3con_A GTPase NRAS; structural 99.6 1.5E-15 5E-20 113.0 11.5 119 17-151 19-140 (190)
107 3reg_A RHO-like small GTPase; 99.6 1.7E-15 5.8E-20 113.2 11.7 117 17-151 21-141 (194)
108 2gco_A H9, RHO-related GTP-bin 99.6 2.1E-15 7.2E-20 113.4 12.1 117 17-151 23-143 (201)
109 1m7b_A RND3/RHOE small GTP-bin 99.6 1.5E-15 5E-20 112.6 10.9 117 17-151 5-125 (184)
110 3geh_A MNME, tRNA modification 99.6 3.5E-16 1.2E-20 131.4 8.3 121 19-151 224-344 (462)
111 1mh1_A RAC1; GTP-binding, GTPa 99.6 1.4E-15 4.9E-20 112.5 10.5 116 18-151 4-123 (186)
112 2j1l_A RHO-related GTP-binding 99.6 2E-15 6.7E-20 114.8 11.4 116 18-151 33-152 (214)
113 2e87_A Hypothetical protein PH 99.6 2E-14 6.9E-19 117.5 18.1 127 17-151 165-294 (357)
114 2atv_A RERG, RAS-like estrogen 99.6 1.8E-15 6.3E-20 113.2 11.0 118 17-151 26-146 (196)
115 3qq5_A Small GTP-binding prote 99.6 8.5E-16 2.9E-20 127.6 9.6 128 15-154 30-157 (423)
116 2fv8_A H6, RHO-related GTP-bin 99.6 2.6E-15 8.8E-20 113.5 11.3 116 18-151 24-143 (207)
117 3q85_A GTP-binding protein REM 99.6 1.3E-15 4.3E-20 111.1 9.3 119 19-151 2-123 (169)
118 1gwn_A RHO-related GTP-binding 99.6 2.2E-15 7.4E-20 113.9 10.8 118 16-151 25-146 (205)
119 3cbq_A GTP-binding protein REM 99.6 2.1E-15 7E-20 113.1 10.6 124 14-151 18-144 (195)
120 3l0i_B RAS-related protein RAB 99.6 1.7E-16 5.8E-21 119.2 4.6 119 17-151 31-152 (199)
121 2aka_B Dynamin-1; fusion prote 99.6 9.5E-14 3.2E-18 110.6 20.8 131 17-152 24-207 (299)
122 1mky_A Probable GTP-binding pr 99.6 4.9E-15 1.7E-19 124.3 13.8 127 18-152 179-307 (439)
123 3gj0_A GTP-binding nuclear pro 99.6 6.6E-16 2.2E-20 117.9 7.8 121 16-151 12-133 (221)
124 3t34_A Dynamin-related protein 99.6 5.7E-15 1.9E-19 120.9 13.7 130 18-152 33-218 (360)
125 1nrj_B SR-beta, signal recogni 99.6 3.6E-15 1.2E-19 113.5 11.7 122 16-152 9-135 (218)
126 4a9a_A Ribosome-interacting GT 99.6 3.8E-15 1.3E-19 121.5 12.3 123 19-150 72-195 (376)
127 1lnz_A SPO0B-associated GTP-bi 99.6 5.3E-16 1.8E-20 125.6 6.9 126 20-151 159-288 (342)
128 2wjg_A FEOB, ferrous iron tran 99.6 1.1E-14 3.6E-19 108.1 13.1 121 18-151 6-126 (188)
129 2iwr_A Centaurin gamma 1; ANK 99.6 3.5E-15 1.2E-19 109.8 10.2 111 18-150 6-121 (178)
130 3b1v_A Ferrous iron uptake tra 99.6 8.2E-15 2.8E-19 115.2 12.6 119 19-151 3-121 (272)
131 2j0v_A RAC-like GTP-binding pr 99.6 3.1E-15 1.1E-19 113.3 9.9 117 17-151 7-127 (212)
132 3tr5_A RF-3, peptide chain rel 99.6 3.9E-15 1.3E-19 127.1 11.5 119 18-153 12-150 (528)
133 2qpt_A EH domain-containing pr 99.6 2E-15 6.8E-20 129.6 9.4 134 17-160 63-239 (550)
134 1xzp_A Probable tRNA modificat 99.6 6.9E-16 2.4E-20 130.2 6.3 119 20-151 244-364 (482)
135 2f7s_A C25KG, RAS-related prot 99.6 1.1E-14 3.8E-19 110.6 12.4 117 18-151 24-155 (217)
136 3bwd_D RAC-like GTP-binding pr 99.6 2E-15 6.7E-20 111.4 7.7 117 17-151 6-126 (182)
137 3c5c_A RAS-like protein 12; GD 99.6 1.4E-14 4.7E-19 107.7 12.3 118 17-151 19-141 (187)
138 3ihw_A Centg3; RAS, centaurin, 99.6 3.2E-15 1.1E-19 110.9 8.7 114 15-150 16-132 (184)
139 3o47_A ADP-ribosylation factor 99.6 1.6E-14 5.4E-19 116.8 13.3 115 18-151 164-280 (329)
140 3p26_A Elongation factor 1 alp 99.6 9.6E-15 3.3E-19 123.9 12.0 119 18-152 32-186 (483)
141 2cxx_A Probable GTP-binding pr 99.6 6.9E-15 2.4E-19 109.2 9.8 124 20-152 2-137 (190)
142 3izy_P Translation initiation 99.6 2.6E-16 8.8E-21 134.0 2.1 116 19-152 4-119 (537)
143 1zun_B Sulfate adenylate trans 99.6 2.9E-14 1E-18 119.4 14.3 119 17-151 22-171 (434)
144 1wb1_A Translation elongation 99.6 2.2E-14 7.5E-19 121.4 13.6 117 18-151 18-139 (482)
145 3j2k_7 ERF3, eukaryotic polype 99.6 2.8E-14 9.5E-19 119.6 13.8 122 14-151 12-169 (439)
146 2qtf_A Protein HFLX, GTP-bindi 99.6 3.4E-14 1.2E-18 116.1 13.6 124 20-151 180-306 (364)
147 2x2e_A Dynamin-1; nitration, h 99.6 5.5E-13 1.9E-17 108.8 20.2 131 18-152 30-212 (353)
148 2h5e_A Peptide chain release f 99.6 3.8E-14 1.3E-18 121.1 13.6 119 18-153 12-150 (529)
149 2qag_A Septin-2, protein NEDD5 99.6 4.9E-14 1.7E-18 115.2 13.3 128 18-151 36-188 (361)
150 3izq_1 HBS1P, elongation facto 99.6 2.9E-14 1E-18 123.7 12.6 120 16-151 164-319 (611)
151 2xex_A Elongation factor G; GT 99.6 2.7E-14 9.3E-19 125.7 12.4 120 17-153 8-143 (693)
152 1s0u_A EIF-2-gamma, translatio 99.5 2.8E-13 9.5E-18 112.6 17.1 121 17-152 6-150 (408)
153 2g3y_A GTP-binding protein GEM 99.5 9.4E-14 3.2E-18 105.3 13.1 120 18-151 36-159 (211)
154 1dar_A EF-G, elongation factor 99.5 4E-14 1.4E-18 124.6 12.3 124 13-153 6-145 (691)
155 1pui_A ENGB, probable GTP-bind 99.5 1.2E-13 4.2E-18 104.3 13.3 126 17-151 24-151 (210)
156 1zo1_I IF2, translation initia 99.5 4.6E-15 1.6E-19 125.3 5.9 116 18-152 3-118 (501)
157 2zej_A Dardarin, leucine-rich 99.5 2.3E-14 7.8E-19 106.2 9.0 116 20-151 3-126 (184)
158 3lvq_E ARF-GAP with SH3 domain 99.5 8E-14 2.7E-18 118.8 13.4 115 18-151 321-437 (497)
159 1kk1_A EIF2gamma; initiation o 99.5 1.6E-13 5.5E-18 114.1 14.8 120 17-151 8-151 (410)
160 3sjy_A Translation initiation 99.5 7.9E-14 2.7E-18 115.7 12.7 120 17-151 6-143 (403)
161 2c78_A Elongation factor TU-A; 99.5 2.1E-14 7.1E-19 119.3 9.0 118 17-151 9-142 (405)
162 2j69_A Bacterial dynamin-like 99.5 3.6E-14 1.2E-18 125.0 10.7 120 18-151 68-244 (695)
163 1d2e_A Elongation factor TU (E 99.5 7.6E-14 2.6E-18 115.6 11.9 117 19-151 3-133 (397)
164 1g7s_A Translation initiation 99.5 5.9E-14 2E-18 121.2 11.1 115 19-151 5-136 (594)
165 3r7w_B Gtpase2, GTP-binding pr 99.5 1E-13 3.4E-18 110.7 11.6 120 21-151 1-120 (331)
166 3vqt_A RF-3, peptide chain rel 99.5 1.5E-13 5E-18 117.9 13.4 120 18-154 30-169 (548)
167 3zvr_A Dynamin-1; hydrolase, D 99.5 1.3E-13 4.4E-18 121.2 13.2 130 18-152 50-232 (772)
168 3th5_A RAS-related C3 botulinu 99.3 1.3E-15 4.3E-20 114.8 0.0 118 17-151 28-148 (204)
169 1f60_A Elongation factor EEF1A 99.5 2.6E-14 8.9E-19 120.3 7.4 118 18-151 6-159 (458)
170 1jny_A EF-1-alpha, elongation 99.5 4.4E-14 1.5E-18 118.3 8.5 118 18-151 5-158 (435)
171 2rdo_7 EF-G, elongation factor 99.5 3.7E-13 1.3E-17 118.7 14.6 120 17-153 8-150 (704)
172 2f9l_A RAB11B, member RAS onco 99.5 3.2E-13 1.1E-17 101.2 12.1 117 19-151 5-124 (199)
173 2ywe_A GTP-binding protein LEP 99.5 1.2E-13 4.1E-18 119.1 10.9 120 18-153 5-141 (600)
174 2elf_A Protein translation elo 99.5 1.5E-13 5.1E-18 112.5 10.5 102 21-149 23-125 (370)
175 2wkq_A NPH1-1, RAS-related C3 99.5 1.9E-13 6.5E-18 110.3 11.0 116 18-151 154-273 (332)
176 1wxq_A GTP-binding protein; st 99.5 3.8E-13 1.3E-17 111.1 12.7 91 20-116 1-114 (397)
177 3cb4_D GTP-binding protein LEP 99.5 1.2E-13 4.1E-18 119.2 10.1 119 19-153 4-139 (599)
178 2qag_C Septin-7; cell cycle, c 99.5 1.7E-12 5.9E-17 107.5 15.6 129 17-151 29-181 (418)
179 2cjw_A GTP-binding protein GEM 99.5 2.5E-13 8.6E-18 101.4 9.6 119 19-151 6-128 (192)
180 3dpu_A RAB family protein; roc 99.4 4.2E-13 1.4E-17 115.3 11.2 120 17-152 39-165 (535)
181 1oix_A RAS-related protein RAB 99.4 1.4E-12 4.7E-17 97.2 12.6 117 19-151 29-148 (191)
182 3mca_A HBS1, elongation factor 99.4 1.6E-14 5.5E-19 125.0 2.2 119 17-151 175-329 (592)
183 3sop_A Neuronal-specific septi 99.4 1.4E-12 4.8E-17 102.4 11.4 133 20-160 3-161 (270)
184 1r5b_A Eukaryotic peptide chai 99.4 2.2E-13 7.7E-18 114.9 7.3 119 17-151 41-195 (467)
185 3avx_A Elongation factor TS, e 99.4 1.8E-12 6.2E-17 117.6 13.4 119 17-151 294-426 (1289)
186 1n0u_A EF-2, elongation factor 99.4 7.2E-13 2.5E-17 119.0 9.5 117 18-150 18-163 (842)
187 2dy1_A Elongation factor G; tr 99.4 3E-12 1E-16 112.3 12.6 117 17-150 7-139 (665)
188 1udx_A The GTP-binding protein 99.4 2.3E-12 7.8E-17 106.7 11.0 125 20-151 158-283 (416)
189 2qag_B Septin-6, protein NEDD5 99.4 3.3E-12 1.1E-16 105.6 11.8 130 14-151 37-190 (427)
190 4fn5_A EF-G 1, elongation fact 99.4 5.8E-12 2E-16 111.4 13.7 121 17-153 11-153 (709)
191 3j25_A Tetracycline resistance 99.4 5.9E-13 2E-17 116.3 6.0 117 20-153 3-135 (638)
192 2qnr_A Septin-2, protein NEDD5 99.3 4.3E-11 1.5E-15 95.4 12.8 129 17-151 16-169 (301)
193 3c5h_A Glucocorticoid receptor 99.3 1.2E-11 4E-16 96.5 7.9 48 103-151 162-212 (255)
194 2ohf_A Protein OLA1, GTP-bindi 99.2 1.7E-11 5.8E-16 100.5 7.9 93 16-114 19-127 (396)
195 3h2y_A GTPase family protein; 99.2 3.8E-13 1.3E-17 110.1 -2.0 123 19-151 160-287 (368)
196 1jal_A YCHF protein; nucleotid 99.2 8.3E-12 2.8E-16 101.3 5.4 90 20-115 3-108 (363)
197 3ec1_A YQEH GTPase; atnos1, at 99.2 6.5E-13 2.2E-17 108.8 -3.1 122 19-151 162-288 (369)
198 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1E-10 3.4E-15 96.1 9.0 96 14-114 15-126 (392)
199 2www_A Methylmalonic aciduria 99.2 4.5E-11 1.5E-15 97.2 6.7 25 17-41 72-96 (349)
200 2dby_A GTP-binding protein; GD 99.1 6.5E-11 2.2E-15 96.6 7.4 90 20-115 2-111 (368)
201 2p67_A LAO/AO transport system 99.1 1.3E-10 4.6E-15 94.2 8.0 25 17-41 54-78 (341)
202 1f5n_A Interferon-induced guan 99.1 3.1E-10 1.1E-14 97.5 10.6 108 17-130 36-147 (592)
203 3p32_A Probable GTPase RV1496/ 99.1 3.8E-11 1.3E-15 98.0 4.1 25 17-41 77-101 (355)
204 2j37_W Signal recognition part 99.1 2.2E-09 7.7E-14 90.8 14.6 123 17-152 99-255 (504)
205 1puj_A YLQF, conserved hypothe 99.1 2.6E-10 8.8E-15 90.0 8.2 67 17-88 118-184 (282)
206 2qm8_A GTPase/ATPase; G protei 99.0 9.7E-10 3.3E-14 88.9 7.4 25 17-41 53-77 (337)
207 3szr_A Interferon-induced GTP- 99.0 3.3E-09 1.1E-13 92.2 10.9 80 69-152 147-229 (608)
208 1yrb_A ATP(GTP)binding protein 99.0 2E-09 6.7E-14 83.9 8.5 128 17-151 12-185 (262)
209 1tq4_A IIGP1, interferon-induc 98.9 1.6E-08 5.5E-13 83.6 11.5 117 19-150 69-188 (413)
210 3dm5_A SRP54, signal recogniti 98.9 6E-08 2E-12 80.6 13.9 122 18-151 99-253 (443)
211 3cnl_A YLQF, putative uncharac 98.8 4.1E-09 1.4E-13 82.2 5.2 60 20-84 100-159 (262)
212 3kl4_A SRP54, signal recogniti 98.8 2E-08 6.7E-13 83.4 8.0 124 18-151 96-252 (433)
213 2wsm_A Hydrogenase expression/ 98.7 7.6E-09 2.6E-13 78.4 4.8 25 18-42 29-53 (221)
214 2v3c_C SRP54, signal recogniti 98.7 2.5E-08 8.6E-13 83.1 6.2 122 18-151 98-252 (432)
215 1rj9_A FTSY, signal recognitio 98.6 4.5E-07 1.5E-11 72.1 12.2 127 18-151 101-261 (304)
216 3ohm_A Guanine nucleotide-bind 98.6 6.2E-07 2.1E-11 71.8 12.5 74 67-151 165-248 (327)
217 4fid_A G protein alpha subunit 98.6 8.8E-07 3E-11 71.3 13.4 74 67-151 159-242 (340)
218 2yhs_A FTSY, cell division pro 98.6 2.3E-07 7.9E-12 77.9 10.2 135 17-162 291-462 (503)
219 3q5d_A Atlastin-1; G protein, 98.6 1.9E-07 6.5E-12 77.8 9.6 108 18-131 66-196 (447)
220 3e70_C DPA, signal recognition 98.6 1.8E-07 6E-12 75.2 8.3 123 17-151 127-282 (328)
221 1cip_A Protein (guanine nucleo 98.5 9.3E-07 3.2E-11 71.7 10.7 73 67-150 191-273 (353)
222 2xxa_A Signal recognition part 98.5 3.4E-06 1.2E-10 70.3 13.5 123 17-151 98-254 (433)
223 1j8m_F SRP54, signal recogniti 98.5 1.3E-06 4.4E-11 69.2 10.3 123 19-151 98-253 (297)
224 1t9h_A YLOQ, probable GTPase E 98.4 1.2E-07 4E-12 75.4 2.8 59 19-82 173-237 (307)
225 1vma_A Cell division protein F 98.4 3.1E-07 1.1E-11 73.1 4.6 134 17-161 102-272 (306)
226 2hf9_A Probable hydrogenase ni 98.3 4.4E-07 1.5E-11 68.8 4.5 25 18-42 37-61 (226)
227 3b9q_A Chloroplast SRP recepto 98.3 7.3E-06 2.5E-10 65.1 11.5 125 17-151 98-260 (302)
228 2ffh_A Protein (FFH); SRP54, s 98.3 1.7E-06 5.8E-11 71.7 8.1 122 18-151 97-251 (425)
229 2og2_A Putative signal recogni 98.3 7.9E-06 2.7E-10 66.3 10.9 125 17-151 155-317 (359)
230 2px0_A Flagellar biosynthesis 98.2 1.7E-06 5.6E-11 68.6 6.3 132 18-162 104-263 (296)
231 1zu4_A FTSY; GTPase, signal re 98.2 5.5E-06 1.9E-10 66.3 9.4 125 17-151 103-268 (320)
232 2yv5_A YJEQ protein; hydrolase 98.2 3.6E-06 1.2E-10 66.9 7.2 58 19-81 165-228 (302)
233 4ido_A Atlastin-1; GTPase, GTP 98.2 2.1E-05 7.1E-10 65.4 11.7 107 17-130 65-195 (457)
234 2rcn_A Probable GTPase ENGC; Y 98.1 1.2E-06 4.2E-11 70.9 3.8 26 19-44 215-240 (358)
235 1ls1_A Signal recognition part 98.1 5.2E-06 1.8E-10 65.7 6.6 122 18-151 97-251 (295)
236 1u0l_A Probable GTPase ENGC; p 98.1 3.2E-06 1.1E-10 67.1 5.4 59 19-81 169-233 (301)
237 3ney_A 55 kDa erythrocyte memb 97.8 2E-06 7E-11 63.8 -0.4 26 18-43 18-43 (197)
238 3tif_A Uncharacterized ABC tra 97.8 1.2E-05 4.2E-10 61.4 4.0 26 19-44 31-56 (235)
239 1lvg_A Guanylate kinase, GMP k 97.8 6.9E-06 2.4E-10 61.1 2.3 24 19-42 4-27 (198)
240 1ye8_A Protein THEP1, hypothet 97.8 8.5E-06 2.9E-10 59.6 2.7 23 21-43 2-24 (178)
241 2pcj_A ABC transporter, lipopr 97.8 1.4E-05 4.9E-10 60.6 3.8 25 20-44 31-55 (224)
242 1znw_A Guanylate kinase, GMP k 97.8 1.1E-05 3.7E-10 60.4 2.9 26 18-43 19-44 (207)
243 1zcb_A G alpha I/13; GTP-bindi 97.8 6.2E-05 2.1E-09 61.2 7.3 73 67-150 199-281 (362)
244 1b0u_A Histidine permease; ABC 97.8 1.9E-05 6.6E-10 61.4 4.0 26 19-44 32-57 (262)
245 1mv5_A LMRA, multidrug resista 97.7 2.4E-05 8.1E-10 60.2 4.4 27 18-44 27-53 (243)
246 1vpl_A ABC transporter, ATP-bi 97.7 2E-05 7E-10 61.0 4.0 26 19-44 41-66 (256)
247 1kgd_A CASK, peripheral plasma 97.7 1.4E-05 4.8E-10 58.4 3.0 24 19-42 5-28 (180)
248 2olj_A Amino acid ABC transpor 97.7 2.1E-05 7.1E-10 61.2 4.0 26 19-44 50-75 (263)
249 2cbz_A Multidrug resistance-as 97.7 2E-05 6.7E-10 60.4 3.8 26 19-44 31-56 (237)
250 3tr0_A Guanylate kinase, GMP k 97.7 1.6E-05 5.4E-10 59.1 3.1 24 19-42 7-30 (205)
251 2onk_A Molybdate/tungstate ABC 97.7 2E-05 6.7E-10 60.5 3.7 25 20-44 25-49 (240)
252 4dzz_A Plasmid partitioning pr 97.7 8E-05 2.8E-09 55.3 7.0 81 68-162 75-155 (206)
253 4g1u_C Hemin import ATP-bindin 97.7 2.3E-05 7.8E-10 61.1 4.1 26 19-44 37-62 (266)
254 1g6h_A High-affinity branched- 97.7 2.1E-05 7.1E-10 61.0 3.8 26 19-44 33-58 (257)
255 1sgw_A Putative ABC transporte 97.7 1.9E-05 6.4E-10 59.5 3.4 25 20-44 36-60 (214)
256 3gfo_A Cobalt import ATP-bindi 97.7 2.2E-05 7.5E-10 61.4 3.8 26 19-44 34-59 (275)
257 3a00_A Guanylate kinase, GMP k 97.7 1.2E-05 4.2E-10 59.1 2.3 24 20-43 2-25 (186)
258 1s96_A Guanylate kinase, GMP k 97.7 1.6E-05 5.5E-10 60.1 3.0 27 17-43 14-40 (219)
259 1htw_A HI0065; nucleotide-bind 97.7 1.9E-05 6.3E-10 56.6 3.1 25 19-43 33-57 (158)
260 1zp6_A Hypothetical protein AT 97.7 2.6E-05 8.9E-10 57.3 4.0 25 18-42 8-32 (191)
261 2pze_A Cystic fibrosis transme 97.7 2.5E-05 8.4E-10 59.5 3.9 26 19-44 34-59 (229)
262 1ji0_A ABC transporter; ATP bi 97.7 2.5E-05 8.4E-10 59.9 3.8 26 19-44 32-57 (240)
263 2ff7_A Alpha-hemolysin translo 97.7 2.5E-05 8.5E-10 60.2 3.8 26 19-44 35-60 (247)
264 1z6g_A Guanylate kinase; struc 97.7 1.5E-05 5.2E-10 60.2 2.5 25 19-43 23-47 (218)
265 2ihy_A ABC transporter, ATP-bi 97.7 2.8E-05 9.5E-10 61.0 3.9 27 19-45 47-73 (279)
266 2yz2_A Putative ABC transporte 97.7 2.9E-05 9.9E-10 60.5 4.0 26 19-44 33-58 (266)
267 2ixe_A Antigen peptide transpo 97.7 2.9E-05 1E-09 60.6 4.0 26 19-44 45-70 (271)
268 2zu0_C Probable ATP-dependent 97.7 2.9E-05 1E-09 60.5 3.8 24 19-42 46-69 (267)
269 2nq2_C Hypothetical ABC transp 97.7 3.1E-05 1.1E-09 59.9 3.8 25 20-44 32-56 (253)
270 2qi9_C Vitamin B12 import ATP- 97.6 2.9E-05 1E-09 59.8 3.6 26 19-44 26-51 (249)
271 2ghi_A Transport protein; mult 97.6 3E-05 1E-09 60.2 3.7 25 19-43 46-70 (260)
272 3c8u_A Fructokinase; YP_612366 97.6 2.3E-05 7.7E-10 58.7 2.8 27 17-43 20-46 (208)
273 2jeo_A Uridine-cytidine kinase 97.6 2.6E-05 8.9E-10 59.9 3.2 35 6-42 14-48 (245)
274 2d2e_A SUFC protein; ABC-ATPas 97.6 3.1E-05 1.1E-09 59.8 3.6 24 19-42 29-52 (250)
275 1knq_A Gluconate kinase; ALFA/ 97.6 3.8E-05 1.3E-09 55.6 3.6 26 16-41 5-30 (175)
276 1azs_C GS-alpha; complex (lyas 97.6 8.6E-05 2.9E-09 61.1 5.9 74 67-151 215-298 (402)
277 4gp7_A Metallophosphoesterase; 97.6 4.2E-05 1.4E-09 55.4 3.7 23 19-41 9-31 (171)
278 3asz_A Uridine kinase; cytidin 97.6 3.3E-05 1.1E-09 57.8 3.0 25 18-42 5-29 (211)
279 2bbs_A Cystic fibrosis transme 97.6 4.5E-05 1.5E-09 60.2 3.8 27 18-44 63-89 (290)
280 2pjz_A Hypothetical protein ST 97.6 4.4E-05 1.5E-09 59.3 3.6 25 19-43 30-54 (263)
281 3tau_A Guanylate kinase, GMP k 97.6 4.5E-05 1.5E-09 57.1 3.4 26 18-43 7-32 (208)
282 3tui_C Methionine import ATP-b 97.6 5.5E-05 1.9E-09 61.4 4.0 26 19-44 54-79 (366)
283 3b85_A Phosphate starvation-in 97.5 2.5E-05 8.4E-10 58.6 1.9 26 20-46 23-48 (208)
284 2eyu_A Twitching motility prot 97.5 4.6E-05 1.6E-09 59.2 3.2 27 17-43 23-49 (261)
285 3fvq_A Fe(3+) IONS import ATP- 97.5 6E-05 2.1E-09 61.1 3.9 26 20-45 31-56 (359)
286 3lnc_A Guanylate kinase, GMP k 97.5 2.7E-05 9.3E-10 59.2 1.8 25 19-43 27-52 (231)
287 3nh6_A ATP-binding cassette SU 97.5 4.2E-05 1.4E-09 60.7 2.9 27 18-44 79-105 (306)
288 2v9p_A Replication protein E1; 97.5 5E-05 1.7E-09 60.2 2.9 25 18-42 125-149 (305)
289 4b4t_L 26S protease subunit RP 97.5 0.00094 3.2E-08 55.5 10.6 25 18-42 214-238 (437)
290 2yyz_A Sugar ABC transporter, 97.5 7.7E-05 2.6E-09 60.5 4.0 26 19-44 29-54 (359)
291 3rlf_A Maltose/maltodextrin im 97.5 7.9E-05 2.7E-09 60.8 4.0 25 20-44 30-54 (381)
292 2it1_A 362AA long hypothetical 97.5 8E-05 2.7E-09 60.5 4.0 26 19-44 29-54 (362)
293 3aez_A Pantothenate kinase; tr 97.5 6.2E-05 2.1E-09 60.0 3.2 27 17-43 88-114 (312)
294 1z47_A CYSA, putative ABC-tran 97.5 7.8E-05 2.7E-09 60.4 3.8 26 19-44 41-66 (355)
295 2j41_A Guanylate kinase; GMP, 97.5 6.6E-05 2.3E-09 55.8 3.2 25 19-43 6-30 (207)
296 1v43_A Sugar-binding transport 97.4 9.1E-05 3.1E-09 60.4 4.0 26 19-44 37-62 (372)
297 4eun_A Thermoresistant glucoki 97.4 6.5E-05 2.2E-09 55.8 3.0 26 17-42 27-52 (200)
298 2bbw_A Adenylate kinase 4, AK4 97.4 8.7E-05 3E-09 57.0 3.6 26 19-44 27-55 (246)
299 2i3b_A HCR-ntpase, human cance 97.4 5.2E-05 1.8E-09 55.9 2.2 24 20-43 2-25 (189)
300 4b4t_K 26S protease regulatory 97.4 0.0011 3.7E-08 55.0 10.3 25 18-42 205-229 (428)
301 1g29_1 MALK, maltose transport 97.4 9.8E-05 3.3E-09 60.2 3.8 25 20-44 30-54 (372)
302 3d31_A Sulfate/molybdate ABC t 97.4 7.2E-05 2.4E-09 60.5 3.0 25 20-44 27-51 (348)
303 1ex7_A Guanylate kinase; subst 97.4 2.9E-05 9.8E-10 57.1 0.5 22 21-42 3-24 (186)
304 4b4t_J 26S protease regulatory 97.4 0.0015 5.2E-08 53.6 10.6 24 19-42 182-205 (405)
305 4e22_A Cytidylate kinase; P-lo 97.4 0.00011 3.8E-09 56.7 3.7 27 18-44 26-55 (252)
306 2xtz_A Guanine nucleotide-bind 97.4 0.00021 7.1E-09 57.9 5.4 73 68-151 182-264 (354)
307 2bdt_A BH3686; alpha-beta prot 97.4 7.7E-05 2.6E-09 54.8 2.6 22 20-41 3-24 (189)
308 1oxx_K GLCV, glucose, ABC tran 97.4 6.7E-05 2.3E-09 60.8 2.2 26 19-44 31-56 (353)
309 4b4t_I 26S protease regulatory 97.3 0.0019 6.3E-08 53.4 10.5 25 18-42 215-239 (437)
310 1kag_A SKI, shikimate kinase I 97.3 8.7E-05 3E-09 53.5 2.4 23 20-42 5-27 (173)
311 1sq5_A Pantothenate kinase; P- 97.3 0.00013 4.3E-09 58.1 3.5 26 17-42 78-103 (308)
312 3ozx_A RNAse L inhibitor; ATP 97.3 0.00017 5.9E-09 61.7 4.5 29 18-46 24-52 (538)
313 3uie_A Adenylyl-sulfate kinase 97.3 0.00013 4.4E-09 54.1 3.1 25 18-42 24-48 (200)
314 3gd7_A Fusion complex of cysti 97.3 0.00015 5.1E-09 59.5 3.7 26 19-44 47-72 (390)
315 2qor_A Guanylate kinase; phosp 97.3 0.00014 4.9E-09 54.1 3.3 25 18-42 11-35 (204)
316 2gza_A Type IV secretion syste 97.3 0.00012 4.2E-09 59.5 3.0 26 18-43 174-199 (361)
317 2qz4_A Paraplegin; AAA+, SPG7, 97.3 0.0025 8.6E-08 48.9 10.4 24 19-42 39-62 (262)
318 3jvv_A Twitching mobility prot 97.3 0.00013 4.5E-09 59.1 3.2 25 19-43 123-147 (356)
319 4a74_A DNA repair and recombin 97.3 0.00013 4.5E-09 55.0 3.0 25 18-42 24-48 (231)
320 3tqc_A Pantothenate kinase; bi 97.3 0.00016 5.6E-09 57.7 3.6 27 16-42 89-115 (321)
321 1yqt_A RNAse L inhibitor; ATP- 97.3 0.0002 6.7E-09 61.4 4.2 29 17-45 45-73 (538)
322 2ehv_A Hypothetical protein PH 97.3 0.00018 6E-09 55.0 3.5 24 17-40 28-51 (251)
323 3j16_B RLI1P; ribosome recycli 97.2 0.00022 7.4E-09 61.9 4.2 31 17-47 101-131 (608)
324 2qt1_A Nicotinamide riboside k 97.2 0.00033 1.1E-08 52.1 4.6 26 17-42 19-44 (207)
325 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00013 4.5E-09 58.6 2.6 25 19-43 171-195 (330)
326 2wwf_A Thymidilate kinase, put 97.2 0.00029 1E-08 52.4 4.2 29 13-41 4-32 (212)
327 4b4t_H 26S protease regulatory 97.2 0.0016 5.6E-08 54.2 8.9 25 18-42 242-266 (467)
328 2ewv_A Twitching motility prot 97.2 0.00017 5.9E-09 58.9 3.1 25 18-42 135-159 (372)
329 4b4t_M 26S protease regulatory 97.2 0.0011 3.8E-08 55.0 7.9 25 18-42 214-238 (434)
330 2vp4_A Deoxynucleoside kinase; 97.2 0.0002 6.8E-09 54.4 3.2 26 17-42 18-43 (230)
331 3vaa_A Shikimate kinase, SK; s 97.2 0.00024 8.3E-09 52.6 3.6 24 18-41 24-47 (199)
332 1jjv_A Dephospho-COA kinase; P 97.2 0.00024 8.1E-09 52.8 3.5 22 20-41 3-24 (206)
333 2f1r_A Molybdopterin-guanine d 97.2 8.1E-05 2.8E-09 54.0 0.9 24 20-43 3-26 (171)
334 3bk7_A ABC transporter ATP-bin 97.2 0.00027 9.1E-09 61.4 4.2 30 17-46 115-144 (607)
335 3ec2_A DNA replication protein 97.2 0.00014 4.8E-09 52.9 2.1 25 19-43 38-62 (180)
336 2oap_1 GSPE-2, type II secreti 97.2 0.00017 5.8E-09 61.3 2.9 25 19-43 260-284 (511)
337 1p9r_A General secretion pathw 97.2 0.00021 7.1E-09 59.2 3.1 26 18-43 166-191 (418)
338 1cke_A CK, MSSA, protein (cyti 97.1 0.0002 7E-09 53.9 2.8 23 20-42 6-28 (227)
339 1lw7_A Transcriptional regulat 97.1 0.00018 6E-09 58.7 2.6 25 19-43 170-194 (365)
340 1rz3_A Hypothetical protein rb 97.1 0.00027 9.3E-09 52.4 3.4 26 17-42 20-45 (201)
341 2npi_A Protein CLP1; CLP1-PCF1 97.1 0.00017 5.8E-09 60.5 2.5 27 18-44 137-163 (460)
342 3qf4_B Uncharacterized ABC tra 97.1 0.00025 8.7E-09 61.6 3.2 27 18-44 380-406 (598)
343 2kjq_A DNAA-related protein; s 97.1 0.00017 5.8E-09 51.0 1.8 26 18-43 35-60 (149)
344 2if2_A Dephospho-COA kinase; a 97.1 0.00023 8E-09 52.7 2.6 22 20-41 2-23 (204)
345 3h4m_A Proteasome-activating n 97.1 0.0023 8E-08 49.8 8.5 24 19-42 51-74 (285)
346 3b60_A Lipid A export ATP-bind 97.1 0.00035 1.2E-08 60.5 4.0 27 18-44 368-394 (582)
347 3b5x_A Lipid A export ATP-bind 97.1 0.00037 1.3E-08 60.3 4.0 27 18-44 368-394 (582)
348 1np6_A Molybdopterin-guanine d 97.1 0.00035 1.2E-08 50.7 3.3 23 20-42 7-29 (174)
349 1odf_A YGR205W, hypothetical 3 97.1 0.00038 1.3E-08 54.8 3.7 27 16-42 28-54 (290)
350 1ly1_A Polynucleotide kinase; 97.1 0.00039 1.3E-08 50.2 3.5 22 20-41 3-24 (181)
351 1y63_A LMAJ004144AAA protein; 97.1 0.00047 1.6E-08 50.4 3.9 25 18-42 9-33 (184)
352 3ozx_A RNAse L inhibitor; ATP 97.0 0.00043 1.5E-08 59.3 4.2 27 19-45 294-320 (538)
353 3lw7_A Adenylate kinase relate 97.0 0.00036 1.2E-08 50.1 3.2 20 20-39 2-21 (179)
354 3end_A Light-independent proto 97.0 0.0023 7.8E-08 50.6 8.1 68 68-149 156-225 (307)
355 3kb2_A SPBC2 prophage-derived 97.0 0.00038 1.3E-08 49.9 3.2 22 20-41 2-23 (173)
356 3bk7_A ABC transporter ATP-bin 97.0 0.00049 1.7E-08 59.8 4.2 26 19-44 382-407 (607)
357 1uf9_A TT1252 protein; P-loop, 97.0 0.0005 1.7E-08 50.7 3.8 26 17-42 6-31 (203)
358 1yqt_A RNAse L inhibitor; ATP- 97.0 0.00051 1.7E-08 58.9 4.2 27 19-45 312-338 (538)
359 3t61_A Gluconokinase; PSI-biol 97.0 0.00043 1.5E-08 51.3 3.3 24 19-42 18-41 (202)
360 3kta_A Chromosome segregation 97.0 0.00044 1.5E-08 50.2 3.2 22 21-42 28-49 (182)
361 2yl4_A ATP-binding cassette SU 97.0 0.00034 1.2E-08 60.7 3.0 27 18-44 369-395 (595)
362 1qhx_A CPT, protein (chloramph 97.0 0.00049 1.7E-08 49.7 3.4 22 20-41 4-25 (178)
363 2obl_A ESCN; ATPase, hydrolase 97.0 0.00036 1.2E-08 56.4 2.9 27 18-44 70-96 (347)
364 3thx_A DNA mismatch repair pro 97.0 0.013 4.4E-07 53.3 13.1 21 19-39 662-682 (934)
365 1nij_A Hypothetical protein YJ 97.0 0.00027 9.3E-09 56.4 2.0 25 19-43 4-28 (318)
366 3euj_A Chromosome partition pr 97.0 0.00035 1.2E-08 58.8 2.7 24 20-43 30-53 (483)
367 4a82_A Cystic fibrosis transme 96.9 0.00033 1.1E-08 60.6 2.6 27 18-44 366-392 (578)
368 1ukz_A Uridylate kinase; trans 96.9 0.00083 2.8E-08 49.7 4.4 27 15-41 11-37 (203)
369 3thx_B DNA mismatch repair pro 96.9 0.0032 1.1E-07 57.1 8.9 36 4-41 660-695 (918)
370 3cm0_A Adenylate kinase; ATP-b 96.9 0.00056 1.9E-08 49.8 3.4 22 19-40 4-25 (186)
371 2rhm_A Putative kinase; P-loop 96.9 0.00063 2.1E-08 49.8 3.7 23 19-41 5-27 (193)
372 3cwq_A Para family chromosome 96.9 0.0065 2.2E-07 45.2 9.3 77 68-162 67-146 (209)
373 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.016 5.4E-07 46.2 12.0 25 18-42 44-68 (322)
374 2x8a_A Nuclear valosin-contain 96.9 0.00037 1.3E-08 54.4 2.4 21 22-42 47-67 (274)
375 3j16_B RLI1P; ribosome recycli 96.9 0.0007 2.4E-08 58.8 4.2 28 20-47 379-406 (608)
376 1kht_A Adenylate kinase; phosp 96.9 0.00064 2.2E-08 49.6 3.4 22 20-41 4-25 (192)
377 2yvu_A Probable adenylyl-sulfa 96.9 0.00092 3.2E-08 48.7 4.2 26 17-42 11-36 (186)
378 3trf_A Shikimate kinase, SK; a 96.9 0.00064 2.2E-08 49.5 3.3 23 19-41 5-27 (185)
379 3qf4_A ABC transporter, ATP-bi 96.9 0.0005 1.7E-08 59.5 3.1 27 18-44 368-394 (587)
380 3a8t_A Adenylate isopentenyltr 96.9 0.0014 4.9E-08 52.4 5.4 24 20-43 41-64 (339)
381 1sxj_E Activator 1 40 kDa subu 96.9 0.0033 1.1E-07 50.6 7.8 22 21-42 38-59 (354)
382 1gvn_B Zeta; postsegregational 96.8 0.00074 2.5E-08 53.1 3.7 24 18-41 32-55 (287)
383 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00091 3.1E-08 47.2 3.7 21 20-40 24-44 (149)
384 1nks_A Adenylate kinase; therm 96.8 0.0008 2.7E-08 49.1 3.4 22 20-41 2-23 (194)
385 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00064 2.2E-08 51.2 2.9 24 19-42 23-46 (235)
386 1ixz_A ATP-dependent metallopr 96.8 0.00054 1.8E-08 52.7 2.5 22 21-42 51-72 (254)
387 2cdn_A Adenylate kinase; phosp 96.8 0.001 3.5E-08 49.1 3.9 25 17-41 18-42 (201)
388 1tev_A UMP-CMP kinase; ploop, 96.8 0.00088 3E-08 49.0 3.5 22 19-40 3-24 (196)
389 2jaq_A Deoxyguanosine kinase; 96.8 0.0008 2.7E-08 49.6 3.3 21 21-41 2-22 (205)
390 2c95_A Adenylate kinase 1; tra 96.8 0.00093 3.2E-08 49.0 3.6 23 19-41 9-31 (196)
391 1xjc_A MOBB protein homolog; s 96.8 0.00092 3.1E-08 48.2 3.4 24 19-42 4-27 (169)
392 2pez_A Bifunctional 3'-phospho 96.8 0.001 3.4E-08 48.2 3.7 24 19-42 5-28 (179)
393 2plr_A DTMP kinase, probable t 96.8 0.001 3.4E-08 49.4 3.7 23 19-41 4-26 (213)
394 1aky_A Adenylate kinase; ATP:A 96.8 0.00096 3.3E-08 50.1 3.5 23 19-41 4-26 (220)
395 2dpy_A FLII, flagellum-specifi 96.7 0.00065 2.2E-08 56.6 2.8 26 18-43 156-181 (438)
396 3tlx_A Adenylate kinase 2; str 96.7 0.0011 3.8E-08 50.7 3.9 23 18-40 28-50 (243)
397 3iij_A Coilin-interacting nucl 96.7 0.0011 3.6E-08 48.1 3.6 22 19-40 11-32 (180)
398 1cr0_A DNA primase/helicase; R 96.7 0.00074 2.5E-08 53.2 3.0 26 18-43 34-59 (296)
399 2v54_A DTMP kinase, thymidylat 96.7 0.0011 3.7E-08 49.0 3.7 24 19-42 4-27 (204)
400 2iw3_A Elongation factor 3A; a 96.7 0.00053 1.8E-08 62.4 2.3 26 19-44 699-724 (986)
401 3cf2_A TER ATPase, transitiona 96.7 0.0097 3.3E-07 53.2 10.2 25 18-42 237-261 (806)
402 3qf7_A RAD50; ABC-ATPase, ATPa 96.7 0.001 3.5E-08 54.1 3.7 20 21-40 25-44 (365)
403 3fb4_A Adenylate kinase; psych 96.7 0.00095 3.3E-08 49.9 3.2 20 21-40 2-21 (216)
404 3umf_A Adenylate kinase; rossm 96.7 0.0015 5.1E-08 49.1 4.2 26 17-42 27-52 (217)
405 1d2n_A N-ethylmaleimide-sensit 96.7 0.0097 3.3E-07 46.0 9.1 25 18-42 63-87 (272)
406 1nn5_A Similar to deoxythymidy 96.7 0.0012 3.9E-08 49.2 3.6 24 18-41 8-31 (215)
407 1in4_A RUVB, holliday junction 96.7 0.00074 2.5E-08 54.2 2.6 24 20-43 52-75 (334)
408 1qf9_A UMP/CMP kinase, protein 96.7 0.0016 5.3E-08 47.5 4.2 22 20-41 7-28 (194)
409 3dl0_A Adenylate kinase; phosp 96.7 0.0011 3.6E-08 49.6 3.2 21 21-41 2-22 (216)
410 1zak_A Adenylate kinase; ATP:A 96.7 0.001 3.6E-08 49.9 3.2 23 19-41 5-27 (222)
411 1svm_A Large T antigen; AAA+ f 96.7 0.00092 3.1E-08 54.6 3.0 25 18-42 168-192 (377)
412 1zd8_A GTP:AMP phosphotransfer 96.7 0.0011 3.9E-08 50.0 3.3 22 19-40 7-28 (227)
413 1vht_A Dephospho-COA kinase; s 96.7 0.0014 4.6E-08 49.1 3.8 23 19-41 4-26 (218)
414 1iy2_A ATP-dependent metallopr 96.6 0.00079 2.7E-08 52.5 2.5 22 21-42 75-96 (278)
415 1via_A Shikimate kinase; struc 96.6 0.00099 3.4E-08 48.1 2.8 21 21-41 6-26 (175)
416 1fnn_A CDC6P, cell division co 96.6 0.016 5.5E-07 46.9 10.4 23 20-42 45-67 (389)
417 1wb9_A DNA mismatch repair pro 96.6 0.00077 2.6E-08 60.3 2.6 37 4-43 595-631 (800)
418 2ze6_A Isopentenyl transferase 96.6 0.0012 4.1E-08 50.8 3.4 22 20-41 2-23 (253)
419 2bwj_A Adenylate kinase 5; pho 96.6 0.0013 4.4E-08 48.3 3.4 23 19-41 12-34 (199)
420 2p5t_B PEZT; postsegregational 96.6 0.00089 3E-08 51.5 2.6 25 17-41 30-54 (253)
421 3vfd_A Spastin; ATPase, microt 96.6 0.0097 3.3E-07 48.7 8.8 24 19-42 148-171 (389)
422 1u0l_A Probable GTPase ENGC; p 96.6 0.0032 1.1E-07 49.8 5.7 65 69-151 63-129 (301)
423 2cvh_A DNA repair and recombin 96.6 0.0012 4E-08 49.3 3.0 24 18-41 19-42 (220)
424 3nwj_A ATSK2; P loop, shikimat 96.6 0.00095 3.2E-08 51.4 2.4 23 19-41 48-70 (250)
425 2f6r_A COA synthase, bifunctio 96.6 0.002 6.8E-08 50.4 4.3 24 17-40 73-96 (281)
426 1njg_A DNA polymerase III subu 96.6 0.0028 9.4E-08 47.6 5.0 23 20-42 46-68 (250)
427 2iyv_A Shikimate kinase, SK; t 96.5 0.0012 4.2E-08 47.9 2.8 22 20-41 3-24 (184)
428 2iw3_A Elongation factor 3A; a 96.5 0.0012 3.9E-08 60.2 2.9 24 19-42 461-484 (986)
429 1uj2_A Uridine-cytidine kinase 96.5 0.0018 6.2E-08 49.7 3.6 25 17-41 20-44 (252)
430 1n0w_A DNA repair protein RAD5 96.5 0.0013 4.6E-08 49.8 2.9 25 18-42 23-47 (243)
431 1jbk_A CLPB protein; beta barr 96.5 0.0019 6.5E-08 46.7 3.6 24 19-42 43-66 (195)
432 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0019 6.4E-08 49.9 3.7 23 19-41 4-26 (260)
433 1ak2_A Adenylate kinase isoenz 96.5 0.0019 6.7E-08 48.9 3.7 24 18-41 15-38 (233)
434 2pt5_A Shikimate kinase, SK; a 96.5 0.0017 6E-08 46.3 3.3 21 21-41 2-22 (168)
435 1lv7_A FTSH; alpha/beta domain 96.5 0.0015 5.3E-08 50.1 3.1 23 20-42 46-68 (257)
436 1m7g_A Adenylylsulfate kinase; 96.5 0.0021 7.1E-08 47.9 3.7 25 18-42 24-48 (211)
437 2vli_A Antibiotic resistance p 96.5 0.0012 4.2E-08 47.7 2.4 22 19-40 5-26 (183)
438 4eaq_A DTMP kinase, thymidylat 96.5 0.0028 9.5E-08 48.0 4.4 26 17-42 24-49 (229)
439 1qhl_A Protein (cell division 96.5 0.00016 5.6E-09 54.8 -2.5 24 21-44 29-52 (227)
440 1e6c_A Shikimate kinase; phosp 96.5 0.0016 5.4E-08 46.7 2.8 22 20-41 3-24 (173)
441 1e4v_A Adenylate kinase; trans 96.5 0.0017 5.9E-08 48.4 3.2 21 21-41 2-22 (214)
442 1gtv_A TMK, thymidylate kinase 96.4 0.00072 2.5E-08 50.3 1.0 22 21-42 2-23 (214)
443 2pbr_A DTMP kinase, thymidylat 96.4 0.0019 6.5E-08 47.1 3.2 21 21-41 2-22 (195)
444 4aby_A DNA repair protein RECN 96.4 0.00048 1.7E-08 56.9 -0.0 20 21-40 62-81 (415)
445 3r20_A Cytidylate kinase; stru 96.4 0.0021 7E-08 48.9 3.4 22 19-40 9-30 (233)
446 1ewq_A DNA mismatch repair pro 96.4 0.0012 4.1E-08 58.8 2.3 25 19-43 576-600 (765)
447 3sr0_A Adenylate kinase; phosp 96.4 0.002 6.9E-08 48.0 3.2 22 21-42 2-23 (206)
448 2z0h_A DTMP kinase, thymidylat 96.4 0.002 6.9E-08 47.1 3.2 21 21-41 2-22 (197)
449 3qks_A DNA double-strand break 96.4 0.0025 8.6E-08 47.3 3.7 21 20-40 24-44 (203)
450 1zuh_A Shikimate kinase; alpha 96.4 0.0023 8E-08 45.7 3.3 22 20-41 8-29 (168)
451 1q3t_A Cytidylate kinase; nucl 96.3 0.0026 8.9E-08 48.3 3.6 25 17-41 14-38 (236)
452 3g5u_A MCG1178, multidrug resi 96.3 0.0021 7.3E-08 60.6 3.6 27 18-44 415-441 (1284)
453 2xb4_A Adenylate kinase; ATP-b 96.3 0.0024 8.2E-08 48.1 3.3 20 21-40 2-21 (223)
454 4f4c_A Multidrug resistance pr 96.3 0.0016 5.3E-08 61.7 2.7 26 18-43 1104-1129(1321)
455 2w58_A DNAI, primosome compone 96.3 0.0026 8.9E-08 46.9 3.3 23 20-42 55-77 (202)
456 3cr8_A Sulfate adenylyltranfer 96.3 0.0013 4.6E-08 56.3 1.9 26 18-43 368-393 (552)
457 1puj_A YLQF, conserved hypothe 96.3 0.0059 2E-07 47.8 5.4 50 95-151 15-64 (282)
458 1nlf_A Regulatory protein REPA 96.3 0.0021 7.1E-08 50.2 2.8 24 18-41 29-52 (279)
459 3eph_A TRNA isopentenyltransfe 96.3 0.0038 1.3E-07 51.2 4.4 22 20-41 3-24 (409)
460 2grj_A Dephospho-COA kinase; T 96.3 0.0029 9.9E-08 46.6 3.4 24 18-41 11-34 (192)
461 3be4_A Adenylate kinase; malar 96.3 0.0028 9.5E-08 47.5 3.3 22 20-41 6-27 (217)
462 3bos_A Putative DNA replicatio 96.2 0.0031 1.1E-07 47.5 3.5 25 18-42 51-75 (242)
463 4f4c_A Multidrug resistance pr 96.2 0.0028 9.6E-08 59.9 3.9 27 18-44 443-469 (1321)
464 4fcw_A Chaperone protein CLPB; 96.2 0.0042 1.4E-07 48.9 4.4 24 19-42 47-70 (311)
465 2p65_A Hypothetical protein PF 96.2 0.0025 8.4E-08 45.9 2.7 24 19-42 43-66 (187)
466 3foz_A TRNA delta(2)-isopenten 96.2 0.004 1.4E-07 49.2 4.0 24 19-42 10-33 (316)
467 2qmh_A HPR kinase/phosphorylas 96.2 0.0036 1.2E-07 46.2 3.4 24 19-42 34-57 (205)
468 3exa_A TRNA delta(2)-isopenten 96.2 0.0038 1.3E-07 49.5 3.7 24 19-42 3-26 (322)
469 3qkt_A DNA double-strand break 96.2 0.0036 1.2E-07 50.3 3.7 21 20-40 24-44 (339)
470 1ltq_A Polynucleotide kinase; 96.1 0.0036 1.2E-07 49.2 3.5 22 20-41 3-24 (301)
471 3zvl_A Bifunctional polynucleo 96.1 0.0075 2.6E-07 49.9 5.6 26 17-42 256-281 (416)
472 3ux8_A Excinuclease ABC, A sub 96.1 0.0019 6.6E-08 56.8 2.1 22 19-40 348-369 (670)
473 1w1w_A Structural maintenance 96.1 0.0029 1E-07 52.6 3.0 25 19-43 26-50 (430)
474 3ake_A Cytidylate kinase; CMP 96.1 0.0038 1.3E-07 46.1 3.3 21 21-41 4-24 (208)
475 3syl_A Protein CBBX; photosynt 96.1 0.0046 1.6E-07 48.7 4.0 25 18-42 66-90 (309)
476 2o5v_A DNA replication and rep 96.1 0.0034 1.2E-07 50.9 3.1 22 20-41 27-48 (359)
477 3cf0_A Transitional endoplasmi 96.1 0.0041 1.4E-07 49.1 3.5 24 19-42 49-72 (301)
478 3n70_A Transport activator; si 96.0 0.0042 1.4E-07 43.3 3.2 23 20-42 25-47 (145)
479 3b9p_A CG5977-PA, isoform A; A 96.0 0.0042 1.4E-07 48.7 3.5 24 19-42 54-77 (297)
480 3g5u_A MCG1178, multidrug resi 96.0 0.004 1.4E-07 58.8 3.9 27 18-44 1058-1084(1284)
481 3crm_A TRNA delta(2)-isopenten 96.0 0.0044 1.5E-07 49.4 3.5 23 20-42 6-28 (323)
482 3t15_A Ribulose bisphosphate c 96.0 0.0046 1.6E-07 48.7 3.6 24 19-42 36-59 (293)
483 1pzn_A RAD51, DNA repair and r 96.0 0.0031 1.1E-07 51.0 2.6 26 18-43 130-155 (349)
484 3d3q_A TRNA delta(2)-isopenten 96.0 0.0043 1.5E-07 49.8 3.4 23 20-42 8-30 (340)
485 1jr3_A DNA polymerase III subu 96.0 0.0092 3.2E-07 48.2 5.4 23 20-42 39-61 (373)
486 3l82_B F-box only protein 4; T 96.0 0.0069 2.4E-07 45.1 4.1 76 70-150 97-176 (227)
487 1a7j_A Phosphoribulokinase; tr 96.0 0.0024 8.1E-08 50.3 1.7 23 19-41 5-27 (290)
488 1tue_A Replication protein E1; 95.9 0.004 1.4E-07 46.2 2.7 22 20-41 59-80 (212)
489 1e69_A Chromosome segregation 95.9 0.0034 1.2E-07 50.1 2.5 21 21-41 26-46 (322)
490 1tf7_A KAIC; homohexamer, hexa 95.9 0.0036 1.2E-07 53.4 2.8 22 18-39 38-59 (525)
491 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0058 2E-07 49.3 3.5 26 17-42 22-47 (359)
492 3m6a_A ATP-dependent protease 95.8 0.0045 1.5E-07 53.1 2.9 25 18-42 107-131 (543)
493 2o8b_B DNA mismatch repair pro 95.8 0.0044 1.5E-07 57.0 2.9 24 19-43 789-812 (1022)
494 1qvr_A CLPB protein; coiled co 95.8 0.012 4.1E-07 53.3 5.6 23 20-42 192-214 (854)
495 2dr3_A UPF0273 protein PH0284; 95.7 0.0069 2.4E-07 45.9 3.5 23 18-40 22-44 (247)
496 1zcb_A G alpha I/13; GTP-bindi 95.7 0.0072 2.5E-07 49.0 3.7 23 17-39 31-53 (362)
497 1sxj_C Activator 1 40 kDa subu 95.7 0.0049 1.7E-07 49.4 2.7 22 21-42 48-69 (340)
498 4ag6_A VIRB4 ATPase, type IV s 95.7 0.0059 2E-07 50.0 3.1 25 18-42 34-58 (392)
499 3co5_A Putative two-component 95.7 0.0041 1.4E-07 43.3 1.8 23 20-42 28-50 (143)
500 2chg_A Replication factor C sm 95.7 0.0072 2.4E-07 44.7 3.3 22 21-42 40-61 (226)
No 1
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=179.22 Aligned_cols=184 Identities=36% Similarity=0.583 Sum_probs=115.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
....++|+|+|++|+|||||+|+|+|...+.......++|..+......+ .+..+.||||||+.+...........+..
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34568999999999999999999999887554433335666666665554 77899999999999887777777888999
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhc-----------cc
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG-----------RE 164 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~-----------~~ 164 (230)
++..+++++|++|+|+|++ +++..+..++..+.+.++.....|+++|+||+|++. ...+++++. ..
T Consensus 105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~--~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLG--DTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CHHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCC--cccHHHHHHhchHHHHHHHHHc
Confidence 9888889999999999998 788888888899988888766679999999999986 334443333 21
Q ss_pred CCchh------------hhhHHHHHhHHHHHHHcCC--CcHHHHHHHHHHHHH
Q 026970 165 CPKPL------------KKGATKLRDQQFEVDSLKG--YSKREISELKEQMHK 203 (230)
Q Consensus 165 ~~~~l------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 203 (230)
..++. ......+..+.+++.++++ |+.+.++++++.+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~~~~ 234 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQK 234 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC--------------
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 11111 1223344666677777666 777766666555433
No 2
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.95 E-value=4.3e-26 Score=177.63 Aligned_cols=205 Identities=29% Similarity=0.387 Sum_probs=140.7
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCc-HHHHHHH
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-EFVGKEI 93 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~-~~~~~~~ 93 (230)
.....++|+|+|.+|+|||||+|+|++...+.......++|..+....... ++..+.||||||+.+..... +.....+
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 345669999999999999999999999987655444445676666665554 78899999999998654333 3344556
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc-cceEEEEEeCCCCCCCCh---------hhHHHHhcc
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI-FDYMIVVFTGGDELEDND---------ETLEDYLGR 163 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~-~~~~ivv~tk~D~~~~~~---------~~~~~~l~~ 163 (230)
..++..+.+++|++|+|+|++ +++..+..+++.+.+.++... ..++++++||+|+....- ..+..+++.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 666666679999999999998 688888999999999988653 347889999999854210 123333332
Q ss_pred cCCchh------------hhhHHHHHhHHHHHHHcCC--CcHHHHHHHHHHHHHhHHHHHHHHHHHHhchhc
Q 026970 164 ECPKPL------------KKGATKLRDQQFEVDSLKG--YSKREISELKEQMHKSYEDQLKRITEMCAGTCN 221 (230)
Q Consensus 164 ~~~~~l------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (230)
...+.. .....++..+.+++.++++ |+++.+++++.......++++++..+.+.++.+
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (247)
T 3lxw_A 175 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPEERLRRVAERVAARVQ 246 (247)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHGGGSCHHHHHHHHHHHHHHHC-
T ss_pred cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcCChHHHHHHHHHHHHHHhh
Confidence 111111 1233455788888988777 899988888655556677777777777666543
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.91 E-value=7.2e-23 Score=160.63 Aligned_cols=135 Identities=33% Similarity=0.584 Sum_probs=105.4
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
+.....+|+|+|++|||||||+|+|++...+.......++|.........+ .+..+.||||||+.++..........+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 344568999999999999999999999876554433333565555554544 7789999999999987766666666777
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe-CCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t-k~D~~~ 151 (230)
.++..+++++|++++|+|++ +++..+..+++.+.+.++.....|+++|+| |+|+..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 77777889999999999998 588888888899999888665567777777 999874
No 4
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.86 E-value=1.7e-20 Score=147.28 Aligned_cols=142 Identities=22% Similarity=0.321 Sum_probs=106.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+++|.+|+|||||+|+|++........ ..+.|.......+.. ++..+.||||||+.++....+...+.+..++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 45899999999999999999999987532222 334455544444443 7789999999999887665555555555554
Q ss_pred HhhcCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcc
Q 026970 98 GMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 163 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~ 163 (230)
...++|+++||++++. +++..+..+++.+.+.++.....|+++|+||+|+..++...+++|++.
T Consensus 113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 2357899999988753 577777899999999988877779999999999876556677777763
No 5
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.85 E-value=2.8e-20 Score=146.67 Aligned_cols=142 Identities=23% Similarity=0.337 Sum_probs=102.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
..++|+++|.+|+|||||+|+|++........ ..+.|.......... .+..+.||||||+.++..........+..++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 45899999999999999999999887533222 233444444443443 6789999999999876544444334443332
Q ss_pred HhhcCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHhcc
Q 026970 98 GMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 163 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l~~ 163 (230)
...++|+++||++++. +++..+..+++.+.+.++...+.|+++|+||+|+..+++.++++|++.
T Consensus 116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~ 180 (270)
T 1h65_A 116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK 180 (270)
T ss_dssp --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH
T ss_pred --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH
Confidence 2457899999988753 577777888999988888776679999999999876444467777763
No 6
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=6.3e-19 Score=134.77 Aligned_cols=131 Identities=12% Similarity=0.172 Sum_probs=90.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH--HHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGKEI 93 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~--~~~~~ 93 (230)
....++|+++|.+|+|||||+|+|++...........++|............+..+.||||||+.+....... ....+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3456899999999999999999999986321222334556655555554335678999999998765433321 12222
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..........+|++++|+|+.+.++..+..++..+... ..|+++|+||+|+..
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT-----GKPIHSLLTKCDKLT 158 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG-----CCCEEEEEECGGGSC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence 22222334567899999999878887777777766552 348999999999986
No 7
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.81 E-value=1.6e-18 Score=138.38 Aligned_cols=125 Identities=22% Similarity=0.221 Sum_probs=90.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
...|+++|++|+|||||+|+|++........ .+++|...... +....+..+.||||||+.++. ..+...+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~-i~~~~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRG-ILTEGRRQIVFVDTPGLHKPM---DALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEE-EEEETTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEE-EEEeCCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence 3689999999999999999999987632221 22334333222 222367899999999998643 234455666677
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.++..+|++++|+|++++++..+..+++.+.+.. ...|+++|+||+|+..
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~---~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLV---GKVPILLVGNKLDAAK 131 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT---TTSCEEEEEECGGGCS
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhc---CCCCEEEEEECcccCC
Confidence 7888999999999998788877766666665532 1358999999999976
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.80 E-value=7.3e-19 Score=140.97 Aligned_cols=128 Identities=19% Similarity=0.298 Sum_probs=93.2
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
++++...|+++|.+|||||||+|+|+|....... ...++|.......... . +..+.||||||+.++. ......+.+
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~~ 82 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHSM 82 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHHH
Confidence 3455579999999999999999999998763222 2334454444443333 5 7899999999998754 223455666
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccceEEEEEeCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
......++..+|++++|+|++++.+..+... ++.+.. ...|+++|+||+|+.
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence 6666677778899999999987788777555 555444 235899999999997
No 9
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.79 E-value=6.9e-18 Score=126.21 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=80.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
...++|+++|.+|+|||||+|+|++...........+.|........ +..+.+|||||+.+...... ....+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~l~Dt~G~~~~~~~~~-~~~~~~~~ 95 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII----NDELHFVDVPGYGFAKVSKS-EREAWGRM 95 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE----TTTEEEEECCCBCCCSSCHH-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE----CCcEEEEECCCCCccccCHH-HHHHHHHH
Confidence 45689999999999999999999987632222223334444443322 34789999999876544322 12222222
Q ss_pred HH---hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IG---MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~---~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.. .....+|++++|+|++++.+..+..+++++... ..|+++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIP 148 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 22 223455999999999878887776666666542 348999999999986
No 10
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.76 E-value=2e-17 Score=127.05 Aligned_cols=136 Identities=17% Similarity=0.124 Sum_probs=82.4
Q ss_pred CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHH
Q 026970 11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG 90 (230)
Q Consensus 11 ~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~ 90 (230)
.++......++|+++|.+|||||||+|+|++...... ...+.|.......... .+..+.+|||||+.+.........
T Consensus 21 ~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~ 97 (228)
T 2qu8_A 21 GLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTI 97 (228)
T ss_dssp -CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHH
T ss_pred cCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhH
Confidence 3444445679999999999999999999998875322 2233455444444443 567899999999975332111100
Q ss_pred HHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 91 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
. ...+...+..+|++++|+|++++.+........++..........|+++|+||+|+..
T Consensus 98 ~--~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 98 E--MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp H--HHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred H--HHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 0 1122233567799999999986644332223333333322212458999999999875
No 11
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.76 E-value=2.4e-17 Score=121.39 Aligned_cols=126 Identities=17% Similarity=0.247 Sum_probs=84.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
...++|+++|.+|+|||||+|+|++...... ...+++.......+.. ++..+.+|||||........
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~---------- 72 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ--EAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMR---------- 72 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCS--SCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSC----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccC--CCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHH----------
Confidence 3458999999999999999999998765322 1223333333333443 67889999999987654322
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCChhhHHHHh
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL 161 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~l 161 (230)
...+..+|++++|+|+++.........+..+.. ...|+++|+||+|+...+...+.+.+
T Consensus 73 -~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~ 131 (178)
T 2lkc_A 73 -ARGAQVTDIVILVVAADDGVMPQTVEAINHAKA-----ANVPIIVAINKMDKPEANPDRVMQEL 131 (178)
T ss_dssp -CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG-----GSCCEEEEEETTTSSCSCHHHHHHHH
T ss_pred -HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh-----CCCCEEEEEECccCCcCCHHHHHHHH
Confidence 245678899999999986666555554443322 23589999999999764333444444
No 12
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.75 E-value=7e-17 Score=120.51 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=85.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEI 93 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~ 93 (230)
....++|+++|.+|+|||||+|+|++...... ....+.|....... .+..+.+|||||+........ .....+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHH
Confidence 34558999999999999999999998873222 22233344333322 245688999999876443322 122233
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..........+|++++|+|+++..+......+.++... ..|+++|+||+|+..
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVK 147 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 33333344567999999999877777777777776654 348999999999875
No 13
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.75 E-value=2.1e-17 Score=119.64 Aligned_cols=121 Identities=26% Similarity=0.258 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
++|+++|.+|+|||||+|++++....... ...++|.......+.. .+..+.+|||||...... ....+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence 68999999999999999999987632111 2233444444444443 677899999999876432 12233344455
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+..+|++++|+|++++++.....+.+.+... ..|+++|+||+|+..
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-----GKPVILVATKVDDPK 122 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-----TCCEEEEEECCCSGG
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-----CCCEEEEEECccccc
Confidence 67788999999999877887776666666552 348999999999875
No 14
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.75 E-value=2.7e-17 Score=120.94 Aligned_cols=127 Identities=22% Similarity=0.192 Sum_probs=82.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
+..+|+++|++|+|||||+|+|++....... ...++|.......+.. ++..+.+|||||+......... ..+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~--~~~~~~- 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVER--IGIERA- 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHH--HHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHH--HHHHHH-
Confidence 3479999999999999999999987532121 1233444433333443 6778999999998753211110 111122
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|++++.+.....++..+.+... ...|+++|+||+|+..
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITG 129 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHC
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcc--cCCCEEEEEECccCCc
Confidence 234567899999999986666555666666665432 2358999999999854
No 15
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=4e-17 Score=128.83 Aligned_cols=128 Identities=21% Similarity=0.267 Sum_probs=77.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCC----CCccceeeeeEEEEee-CC--eEEEEEeCCCCCCCCCCcH---
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS----SSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSE--- 87 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~--~~~~liDtPG~~~~~~~~~--- 87 (230)
...+|+++|.+|+|||||+|+|++...+..... ....|........... ++ ..+.||||||+.+......
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 458999999999999999999999876544321 0022332222222221 33 3899999999976543221
Q ss_pred HHHHHH----HHHHHh---------hcCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 88 FVGKEI----VKCIGM---------AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 88 ~~~~~~----~~~~~~---------~~~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+...+ ..++.. ...++|+++|+++.. ..+...+..+++.+.. ..|+++|+||+|.+.
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 158 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCC
Confidence 122111 222221 113478999999765 3677777776666554 358999999999986
No 16
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=3.4e-17 Score=137.43 Aligned_cols=123 Identities=22% Similarity=0.281 Sum_probs=84.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
++|+++|.+|||||||+|+|++...... ...+++|.+.....+.+ ++..+.+|||||+.... .......+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 5899999999999999999998864322 23456677666666665 78899999999987432 11122345555556
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
++..+|++++|+|+.++++..+..+.+++.+. ..|+++|+||+|...
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLR 124 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHH
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCcc
Confidence 77889999999999878888887777766653 248999999999753
No 17
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.73 E-value=6e-17 Score=119.36 Aligned_cols=118 Identities=20% Similarity=0.200 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
...++|+++|.+|+|||||+|+|++..... ....+.+.......+.. ++ ..+.+|||||.......
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------- 74 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTI--------- 74 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSC---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhh---------
Confidence 455899999999999999999999876532 22333344443333433 44 57899999996544322
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ..++..+.... ...|+++|+||+|+..
T Consensus 75 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 75 --TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPE 127 (181)
T ss_dssp --CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGG
T ss_pred --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCch
Confidence 2245678899999999985422222 23444444432 2358999999999765
No 18
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.72 E-value=9.9e-17 Score=119.46 Aligned_cols=127 Identities=13% Similarity=0.035 Sum_probs=79.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHH
Q 026970 10 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEF 88 (230)
Q Consensus 10 ~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~ 88 (230)
+..........+|+++|.+|+|||||+|+|++........... +.......+... ....+.+|||||.......
T Consensus 13 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--- 87 (189)
T 2gf9_A 13 GLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV--GIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI--- 87 (189)
T ss_dssp -CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC--CCEEEEEEEEETTEEEEEEEEECCSCCSSCCS---
T ss_pred CCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce--eEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh---
Confidence 3333444456899999999999999999999876422211122 222222222221 2357899999997654322
Q ss_pred HHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..
T Consensus 88 --------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 88 --------TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW--DNAQVILVGNKCDLED 141 (189)
T ss_dssp --------GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred --------HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccc
Confidence 2356678899999999974432222 344455554321 2358999999999875
No 19
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.71 E-value=9.8e-17 Score=120.88 Aligned_cols=120 Identities=20% Similarity=0.171 Sum_probs=74.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
.....+|+++|.+|+|||||+|+|++...... ..+++.......+.. ++ ..+.+|||||.....
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~---------- 76 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA---------- 76 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTT---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCccceEEEEEEEE-CCEEEEEEEEcCCChhhhH----------
Confidence 34558999999999999999999997764211 111122221222222 33 378899999976421
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+..
T Consensus 77 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 77 -AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 133 (206)
T ss_dssp -HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGG
T ss_pred -HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccc
Confidence 122233445789999999984322222 344444554432 22458999999999875
No 20
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=119.24 Aligned_cols=120 Identities=20% Similarity=0.194 Sum_probs=79.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|+|++...... .....+.......+.. ++ ..+.+|||||.....
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------- 79 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFR----------- 79 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSC--CCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGC-----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhh-----------
Confidence 4458999999999999999999998764222 2233343343343433 44 478999999965432
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
.....++..+|++++|+|++++.+.. ...++..+...... ..|+++|+||+|+...
T Consensus 80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK 136 (196)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT
T ss_pred hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc
Confidence 12234557789999999998533222 14455555554322 3589999999998753
No 21
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.71 E-value=5.8e-17 Score=119.23 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
....+|+++|.+|+|||||+|+|++...........+.+... ..+... ....+.+|||||..... .
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~-----------~ 79 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT--RIIEVSGQKIKLQIWDTAGQERFR-----------A 79 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEE--EEEEETTEEEEEEEEECTTGGGTC-----------H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEECCeEEEEEEEECCCChHhh-----------h
Confidence 445899999999999999999999876422211111222222 222221 23478999999965422 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|+++..+... ..++..+..... ...|+++|+||+|+..
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEA 134 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 23344557799999999985432222 344454555432 2458999999999864
No 22
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=4.5e-17 Score=121.70 Aligned_cols=124 Identities=18% Similarity=0.099 Sum_probs=76.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
.......+|+++|.+|+|||||+|+|++...........+.+......... .....+.+|||||.....
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~---------- 86 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFH---------- 86 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGG----------
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhH----------
Confidence 333556899999999999999999999876422212222222222222111 134578999999965422
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|+++..+... ..++..+.+... ...|+++|+||+|+..
T Consensus 87 -~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 87 -SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSD 142 (192)
T ss_dssp -GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred -hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 122244567899999999985433222 344555554321 2358999999999864
No 23
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.71 E-value=3.4e-16 Score=118.10 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=77.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||+|+|++...... .....+.......+.. ++ ..+.+|||||.......
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~---------- 73 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTND--YISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTI---------- 73 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTT--CCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCC----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHH----------
Confidence 458999999999999999999998764222 1222232332233333 33 47899999997654422
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..
T Consensus 74 -~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 74 -TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKD 127 (206)
T ss_dssp -CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTT
T ss_pred -HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence 2245678899999999985433222 334455544322 2358999999999875
No 24
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.71 E-value=7.6e-17 Score=117.70 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=73.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
...+|+++|.+|+|||||+|++++....... ....+.......+... ....+.+|||||..... ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~ 71 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKH--ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH-----------AL 71 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSC--CCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCC--CCccceEEEEEEEEECCEEEEEEEEECCCcHhhh-----------hh
Confidence 4489999999999999999999977542211 1222222222222221 12368899999965422 23
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+..
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEK 125 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGG
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECccccc
Confidence 3456678899999999975432222 3445555554332 358999999999875
No 25
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.71 E-value=7.5e-17 Score=118.98 Aligned_cols=120 Identities=22% Similarity=0.194 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
....+|+++|.+|+|||||+|+|++...........+.+. ....+... ....+.+|||||..... .
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 76 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAF--FSQTLAVNDATVKFEIWDTAGQERYH-----------S 76 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSE--EEEEEEETTEEEEEEEEECCCSGGGG-----------G
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEE--EEEEEEECCEEEEEEEEeCCCChhhh-----------h
Confidence 4457999999999999999999998765322211222222 22222221 23478999999965322 1
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+.. ...++..+..... ...|+++|+||+|+..
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLD 131 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTT
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccc
Confidence 2224456789999999997543322 2445555555422 2458999999999875
No 26
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.70 E-value=4.1e-17 Score=124.19 Aligned_cols=118 Identities=17% Similarity=0.154 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE--EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
...+|+|+|.+|||||||+++++...+... ...|....+. ..... ....+.||||+|...+.
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~----~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~----------- 76 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNT----YQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR----------- 76 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC--------------CEEEEEECSSCEEEEEEECCSCTTTCG-----------
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCC----cCCccceEEEEEEEEecceEEEEEEEECCCchhhh-----------
Confidence 347999999999999999999986654211 1122222221 12221 22468899999976543
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
.....++++++++++|+|++++-+... ..++..+....+.. .|+++|+||+|+...
T Consensus 77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADK 133 (216)
T ss_dssp GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGG
T ss_pred hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhc
Confidence 233456788999999999985544333 56666666655443 489999999998653
No 27
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.70 E-value=1.4e-16 Score=118.05 Aligned_cols=119 Identities=17% Similarity=0.153 Sum_probs=77.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|+|++...... .....+.......+.. ++ ..+.+|||||.... .
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD--SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERF-----------R 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------H
Confidence 4458999999999999999999997764221 1222222222233332 33 47899999996431 2
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDA 129 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 344567788999999999985332222 334444444322 2458999999999864
No 28
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.70 E-value=1.6e-16 Score=119.09 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=77.4
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE 92 (230)
Q Consensus 13 ~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (230)
..+....++|+|+|.+|||||||+|+|++....... ...|.......+. ..+..+.+|||||.....
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~---~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~--------- 77 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKH---ITATVGYNVETFE-KGRVAFTVFDMGGAKKFR--------- 77 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----C---CCCCSSEEEEEEE-ETTEEEEEEEECCSGGGG---------
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccc---cccccceeEEEEE-eCCEEEEEEECCCCHhHH---------
Confidence 344556689999999999999999999988753311 1123333333343 367899999999975432
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc------cccceEEEEEeCCCCCC
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK------KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~------~~~~~~ivv~tk~D~~~ 151 (230)
.....++..+|++++|+|+++..+... ..++..+...... ....|+++|+||+|+..
T Consensus 78 --~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 78 --GLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp --GGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred --HHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 233456788999999999985533222 2333333221110 01458999999999986
No 29
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.70 E-value=1.2e-16 Score=134.06 Aligned_cols=128 Identities=18% Similarity=0.171 Sum_probs=83.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~ 94 (230)
....+|+++|++|||||||+|+|++....... ...++|.......+.. ++..+.||||||+.+.....+ +....+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~- 249 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVL- 249 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHH-
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHH-
Confidence 34589999999999999999999998653222 2344555544444443 678899999999865432111 001111
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
.. ...+..+|++++|+|++++.+..+..++..+.+. ..++++|+||+|+...+
T Consensus 250 ~~-~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 250 RA-LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKD 302 (436)
T ss_dssp HH-HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCC
T ss_pred HH-HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCcc
Confidence 11 1234457999999999988888887776665542 35899999999998643
No 30
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.70 E-value=1.9e-16 Score=118.76 Aligned_cols=129 Identities=14% Similarity=0.090 Sum_probs=77.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
.+.....+|+++|.+|||||||++.+++........ ....+.......+.......+.+|||||...+......
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~----- 88 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD----- 88 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGG-GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC-----
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCccee-eeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh-----
Confidence 445566899999999999999999998864321111 11111111111111123468999999998654322200
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...++.++|++++|+|+++++......+..++.+........|+++|+||+|+..
T Consensus 89 ---~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 89 ---YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp ---HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred ---cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 0134456899999999987644444555566665422223458999999999875
No 31
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.70 E-value=4.8e-17 Score=118.70 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=75.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
...+|+++|.+|+|||||+|+|++...........+.+... ...... ....+.+|||||..... ..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~ 71 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERFR-----------AL 71 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhhh-----------cc
Confidence 34799999999999999999999876422212222222222 222221 23578999999975422 12
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTD 125 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGG
T ss_pred cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCcccc
Confidence 2244567899999999985433222 345555555322 2358999999999875
No 32
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.70 E-value=5.4e-16 Score=113.23 Aligned_cols=116 Identities=15% Similarity=0.101 Sum_probs=77.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|.+|+|||||+|+|++..... ...|.......+.. ++..+.+|||||..... ..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~-----------~~ 67 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTY-KNLKFQVWDLGGLTSIR-----------PY 67 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEEE-TTEEEEEEEECCCGGGG-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEEEE-CCEEEEEEECCCChhhh-----------HH
Confidence 345899999999999999999998765421 11233333334443 57899999999975422 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ...++...... ....|+++|+||+|+..
T Consensus 68 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 68 WRCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 3456778999999999985544332 22233333221 13458999999999876
No 33
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.70 E-value=3.2e-16 Score=117.64 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=72.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC-----------------------------
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------------------- 68 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------- 68 (230)
...+|+++|++|+|||||+|+|++...... ....+........+.. ++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHEN--TNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSCEEEEEEEET-TC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCC--cCccccceeEEEEEEe-cCccccccccccccccccccccccccccccc
Confidence 458999999999999999999998764211 1111111121122221 11
Q ss_pred ----------eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccccc
Q 026970 69 ----------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIF 137 (230)
Q Consensus 69 ----------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~ 137 (230)
..+.+|||||...... .....+..+|++++|+|++++.+... ..++..+....+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---- 147 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---- 147 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----
T ss_pred cccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----
Confidence 6789999999654331 22244567899999999985433222 344444444322
Q ss_pred ceEEEEEeCCC
Q 026970 138 DYMIVVFTGGD 148 (230)
Q Consensus 138 ~~~ivv~tk~D 148 (230)
.|+++|+||+|
T Consensus 148 ~piilv~NK~D 158 (208)
T 3clv_A 148 YIIILVANKID 158 (208)
T ss_dssp CEEEEEEECTT
T ss_pred CcEEEEEECCC
Confidence 68999999999
No 34
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=5.1e-17 Score=118.47 Aligned_cols=118 Identities=19% Similarity=0.150 Sum_probs=74.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
..+|+++|++|+|||||+|+|++....... .+..+.......+... ....+.+|||||..... ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~ 69 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENK--EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-----------SLA 69 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-----------GGH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCChhhh-----------hhh
Confidence 378999999999999999999977642221 1222222222222221 22478999999965321 223
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQ 122 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccc
Confidence 345577899999999985432222 344444544432 2358999999999875
No 35
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.70 E-value=7.6e-17 Score=117.53 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=74.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
...+|+++|.+|+|||||+|+|++...........+.+. ........ .+..+.+|||||..... ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~ 71 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVCLDDTTVKFEIWDTAGQERYH-----------SL 71 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEECCEEEEEEEEeCCCcHHhh-----------hh
Confidence 347999999999999999999997654222111222222 12222221 24578999999965421 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLAN 125 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence 2345577899999999985432222 344444444322 2358999999999864
No 36
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1e-16 Score=117.05 Aligned_cols=118 Identities=22% Similarity=0.216 Sum_probs=72.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|.+|+|||||+|+|++......... |....+......++ ..+.+|||||..+.. ..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~ 67 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIP----TVEDTYRQVISCDKSICTLQITDTTGSHQFP-----------AM 67 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCC----CSCEEEEEEEEETTEEEEEEEEECCSCSSCH-----------HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----CccccEEEEEEECCEEEEEEEEECCCchhhH-----------HH
Confidence 47999999999999999999998754221111 11111111111122 468999999976432 11
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ..++..+.+..+.....|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 2223345699999999984432222 345555555433223458999999999865
No 37
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.70 E-value=2.7e-16 Score=132.58 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=85.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|.+|+|||||+|+|++....... ...++|.......+.. ++..+.+|||||+.+.....+. .+.+...
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~-~e~~~~~ 269 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYET-TEKYSVL 269 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-C------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCC-CSHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccC-CCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchH-HHHHHHH
Confidence 45689999999999999999999987643332 2334455544444443 6789999999998653211100 0111111
Q ss_pred -HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCCh
Q 026970 97 -IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 154 (230)
Q Consensus 97 -~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (230)
...++..+|++++|+|+++.++..+..++..+.+. + .|+++|+||+|+...+.
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCS
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCCch
Confidence 11234567999999999988888888888777662 2 48999999999986443
No 38
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=119.83 Aligned_cols=124 Identities=14% Similarity=0.180 Sum_probs=74.5
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHH
Q 026970 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFV 89 (230)
Q Consensus 12 ~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~ 89 (230)
.+.+.....+|+++|.+|+|||||+|+|++...... .....+.......+.. ++ ..+.+|||||....
T Consensus 19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~------- 88 (192)
T 2il1_A 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEA--CKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF------- 88 (192)
T ss_dssp ---CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-------
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcC--CCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------
Confidence 344455668999999999999999999998764222 1222233333333333 33 47899999996431
Q ss_pred HHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.......+..+|++++|+|+++..+... ..++..+..... ...|+++|+||+|+..
T Consensus 89 ----~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 89 ----NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET 145 (192)
T ss_dssp ----HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred ----HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 1222233456799999999985433332 344455544322 2358999999999865
No 39
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.69 E-value=2.4e-16 Score=118.63 Aligned_cols=118 Identities=12% Similarity=0.072 Sum_probs=75.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
..+|+++|.+|+|||||+|+|++........ ...........+... ....+.+|||||.... ....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~~ 74 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFV--STVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-----------RTIT 74 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCC--CCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CccceeEEEEEEEECCeEEEEEEEECCCchhh-----------cchH
Confidence 4799999999999999999999876422211 111222222222221 2357899999997532 1334
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMED 127 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTT
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCc
Confidence 456678899999999975432222 334444444321 2358999999999875
No 40
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.69 E-value=1e-15 Score=113.53 Aligned_cols=116 Identities=14% Similarity=0.130 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|.+|+|||||+|++++... .. ...|.......+.. ++..+.+|||||... +...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~---~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV--DT---ISPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC--SS---CCCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC--Cc---ccccCccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence 4568999999999999999999998762 11 11233333334443 678999999999742 2233
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ...++...... ....|+++|+||+|+..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 4466788999999999985533322 22223332221 12458999999999876
No 41
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.69 E-value=1.8e-16 Score=123.73 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~~ 97 (230)
++|+++|.+|+|||||+|+|+|....... .+++|.......+.. ++..+.+|||||+.+...... ...+.+...+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~--~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGN--WPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEE--CTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccC--CCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 58999999999999999999998643332 345666665555554 678999999999987653210 1112222222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
. ....+|++++|+|+++ . .....+..++.+ ...|+++|+||+|...
T Consensus 79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 79 V-IDLEYDCIINVIDACH-L-ERHLYLTSQLFE-----LGKPVVVALNMMDIAE 124 (256)
T ss_dssp H-HHSCCSEEEEEEEGGG-H-HHHHHHHHHHTT-----SCSCEEEEEECHHHHH
T ss_pred H-hhCCCCEEEEEeeCCC-c-hhHHHHHHHHHH-----cCCCEEEEEEChhcCC
Confidence 1 1267899999999984 2 222333333332 2358999999999864
No 42
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=3.7e-17 Score=137.84 Aligned_cols=124 Identities=23% Similarity=0.213 Sum_probs=82.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
..++|+|+|.+|||||||+|+|+|...... ....++|.........+ .+..+.+|||||+.... +.....+....
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~ 96 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQA 96 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCcc---hHHHHHHHHHH
Confidence 347999999999999999999998765322 23456677666665554 67789999999987422 22345566666
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++..+|++|+|+|+.+.++..+..+.+.+.+ ...|+++|+||+|...
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----
T ss_pred HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchh
Confidence 667778899999999987898888877777654 2358999999999864
No 43
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.69 E-value=9.9e-17 Score=119.80 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=74.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
...+|+++|.+|+|||||+|+|++........ ...........+.. .....+.+|||||...... .
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 90 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR--TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA-----------I 90 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC--CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT-----------T
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEeCCCchhhhh-----------h
Confidence 45799999999999999999999876432211 11122221122221 1235789999999865432 1
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ..++..+.... ....|+++|+||+|+..
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGG
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCccc
Confidence 2234567899999999974332211 23333333321 12458999999999875
No 44
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.69 E-value=1.5e-16 Score=117.26 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=72.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee--CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|+|++...... ..+..+.......+... ....+.+|||||.... .
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~ 72 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQ--YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF-----------Q 72 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTT--C---CCCSCEEEEECCSSSCCEEEEEECCC-----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCccceEEEEEEEEEcCCcEEEEEEEECCCChHh-----------h
Confidence 4558999999999999999999998764221 11222222222223321 2357899999995432 2
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc--ccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG--KKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|++++.+... ..++..+..... .....|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 333456778999999999975432222 344455544432 113458999999999854
No 45
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.69 E-value=4.5e-16 Score=116.92 Aligned_cols=123 Identities=20% Similarity=0.087 Sum_probs=73.4
Q ss_pred CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHH
Q 026970 11 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEF 88 (230)
Q Consensus 11 ~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~ 88 (230)
..........+|+++|.+|+|||||++++++.... .. ..+++.......+. .++. .+.+|||||.......
T Consensus 12 ~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~-~~--~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~--- 84 (201)
T 2q3h_A 12 RAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP-TE--YIPTAFDNFSAVVS-VDGRPVRLQLCDTAGQDEFDKL--- 84 (201)
T ss_dssp --------CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEE-ETTEEEEEEEEECCCSTTCSSS---
T ss_pred ccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCC-CC--CCCcccceeEEEEE-ECCEEEEEEEEECCCCHHHHHH---
Confidence 33444566789999999999999999999987631 11 11222211112222 2443 6779999998764422
Q ss_pred HHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 89 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+.++|++++|+|++++.+.... .++..+..... ..|+++|+||+|+..
T Consensus 85 --------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 85 --------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRE 138 (201)
T ss_dssp --------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGG
T ss_pred --------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence 22456788999999999854333332 35555555432 458999999999875
No 46
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.69 E-value=1.1e-15 Score=112.76 Aligned_cols=118 Identities=20% Similarity=0.199 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||+|+|++...... . . + |....+......++ ..+.+|||||...+....
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~-~-~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------- 71 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDS-Y-D-P-TIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP--------- 71 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSC-C-C-T-TCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC---------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCC-C-C-C-CccccEEEEEEECCEEEEEEEEeCCCchhhhHHH---------
Confidence 458999999999999999999996553111 1 1 1 22222222222244 467899999987654222
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|++++-+... ..++..+.+.+. ....|+++|+||+|+..
T Consensus 72 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 72 --QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp --GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTT
T ss_pred --HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 245678899999999984322222 334444444332 22458999999999864
No 47
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.69 E-value=5.4e-17 Score=136.10 Aligned_cols=122 Identities=22% Similarity=0.186 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
++|+++|.+|||||||+|+|++...... ....++|.+..+....+ .+..+.+|||||+..... .....+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~---~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDE---PFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcch---hHHHHHHHHHHH
Confidence 6899999999999999999998764322 23456676666665554 667899999999864221 144555555566
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+..+|++++|+|+.++++..+..+.+.+.+ ...|+++|+||+|...
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 125 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC--
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCcc
Confidence 6678899999999988888877666655543 2358999999999875
No 48
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=117.47 Aligned_cols=121 Identities=14% Similarity=0.060 Sum_probs=77.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
.....+|+++|.+|+|||||+|+|++...+... ...|.......+.. ++..+.+|||||..... .
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~ 82 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRYR-----------N 82 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTTG-----------G
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHHH-----------H
Confidence 345689999999999999999999987632222 12233333444443 56899999999976532 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+..
T Consensus 83 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 83 LWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp GGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 22355678899999999985322221 2333333332110 02458999999999975
No 49
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=3.4e-16 Score=118.56 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=76.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
.....+|+++|.+|+|||||+|+|++...... ...+++.......+.. ++ ..+.+|||||.......
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-------- 85 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI-------- 85 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCS--SSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC--------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH--------
Confidence 34568999999999999999999997764221 1222233333333333 44 57899999997643322
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
....+..+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+.
T Consensus 86 ---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~ 138 (213)
T 3cph_A 86 ---TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDME 138 (213)
T ss_dssp ---CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCS
T ss_pred ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCc
Confidence 1234567899999999974332222 3455555554322 35899999999984
No 50
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.68 E-value=2.5e-16 Score=116.46 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=76.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
.....+|+++|.+|+|||||+|+|++........ ..+ .....+.. ++..+.+|||||..... .
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~ 80 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIG----SNVEEIVI-NNTRFLMWDIGGQESLR-----------S 80 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEEC-CSS----SSCEEEEE-TTEEEEEEEESSSGGGT-----------C
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCC-cCc----eeeEEEEE-CCEEEEEEECCCCHhHH-----------H
Confidence 3456899999999999999999999876522111 112 12223333 67899999999985432 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+... ..++..+.+.. .....|+++|+||+|+..
T Consensus 81 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 81 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp GGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCccc
Confidence 22356678899999999986544332 22333222211 023458999999999875
No 51
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.68 E-value=3.7e-16 Score=123.25 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~ 96 (230)
.++|+++|.+|+|||||+|+|+|...... ..+++|.......+.. .+..+.+|||||+.+..... ......+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~--~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEE--ECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 47999999999999999999999874222 2345566665555554 56789999999998865311 1112222222
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+ .....+|++++|+|+++ . .....+...+.+. ..|+++|+||+|+..
T Consensus 80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (274)
T ss_dssp H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH-----TCCEEEEEECHHHHH
T ss_pred H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc-----CCCEEEEEECccchh
Confidence 2 22368899999999984 2 2334444555543 358999999999764
No 52
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.68 E-value=4.6e-16 Score=115.48 Aligned_cols=118 Identities=21% Similarity=0.231 Sum_probs=71.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||+|+|++...... ..+++.......... ++. .+.+|||||........
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~--------- 69 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMR--------- 69 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTTH---------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHHH---------
Confidence 358999999999999999999997764211 112222222222222 444 47789999976543221
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+..
T Consensus 70 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 70 --DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSS
T ss_pred --HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcc
Confidence 123345689999999985432222 344444544322 23458999999999874
No 53
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=6.6e-16 Score=113.76 Aligned_cols=121 Identities=19% Similarity=0.170 Sum_probs=74.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|+|++....... ....++.......+.. ++ ..+.+|||||.....
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~----------- 74 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFR----------- 74 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------
Confidence 34589999999999999999999987642211 1122222222222222 33 378899999965322
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
......+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..+
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHE 131 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSC
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcc
Confidence 233455677899999999985433222 345555555432 24589999999998753
No 54
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=5.5e-16 Score=116.61 Aligned_cols=121 Identities=23% Similarity=0.217 Sum_probs=73.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEE-EEe-eCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR-TVL-KDGQVVNVIDTPGLFDFSAGSEFVGKE 92 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (230)
+.....+|+++|.+|+|||||+|+|++...... .. .|....+.. ... .....+.+|||||...+...
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------- 88 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG--YD--PTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL------- 88 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSC--CC--CCSEEEEEEEEC----CEEEEEEEECCCCTTCCC-------
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC--CC--CccceEEEEEEEECCEEEEEEEEECCCccchHHH-------
Confidence 334568999999999999999999998764211 11 122222111 111 13467899999997765432
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+..
T Consensus 89 ----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 89 ----PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSP 143 (201)
T ss_dssp ----CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGG
T ss_pred ----HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCcc
Confidence 2256678899999999984322221 233333333211 12458999999999874
No 55
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.68 E-value=1.3e-16 Score=118.06 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||+|+|++...... ..++++.......+.. ++ ..+.+|||||..... .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------~ 72 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFR-----------T 72 (183)
T ss_dssp EEEEEEEECCCCC----------------C--HHHHHCEEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhh-----------h
Confidence 458999999999999999999997653211 1112222222223332 44 578999999975422 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVND 127 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCS
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCc
Confidence 23456678999999999985432222 334444444322 2358999999999875
No 56
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.68 E-value=6.7e-16 Score=117.16 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||+++|++...... ..+++ .....+.... +..+.+|||||... +..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~ 69 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDT---QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHES-----------LRF 69 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCB---CCCCS--CEEEEEECSSTTCCEEEEEECCCCHH-----------HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc---cCCcc--eeeEEEEecCCCccEEEEEECCCChh-----------HHH
Confidence 458999999999999999999997763211 11222 2222233322 56899999999742 112
Q ss_pred -HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccceEEEEEeCCCCCC
Q 026970 96 -CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 -~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivv~tk~D~~~ 151 (230)
....++.++|++++|+|+++ +........+.+...+. .....|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 70 QLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp HHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred HHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 23345678899999999983 32223333333333321 123458999999999876
No 57
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.68 E-value=3.1e-16 Score=114.12 Aligned_cols=118 Identities=20% Similarity=0.091 Sum_probs=74.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
...+|+++|++|+|||||+|+|++...... .....+.......+.... ...+.+|||||........
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 71 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKD--YKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT---------- 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCC--SSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH----------
Confidence 358999999999999999999998754221 112222222222232211 3478999999965433221
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|++++.+... ..++..+.... ...|+++|+||+|+..
T Consensus 72 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 72 -KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLD 123 (168)
T ss_dssp -HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGG
T ss_pred -HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCc
Confidence 234567899999999985322221 33444444433 2358999999999875
No 58
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.68 E-value=1.5e-15 Score=113.08 Aligned_cols=117 Identities=19% Similarity=0.119 Sum_probs=76.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|.+|+|||||+|+|++...... ...|....+..+. ..+..+.+|||||... +...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~-----------~~~~ 83 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKIT-KGNVTIKLWDIGGQPR-----------FRSM 83 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEE-ETTEEEEEEEECCSHH-----------HHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCCCceeEEEEE-eCCEEEEEEECCCCHh-----------HHHH
Confidence 3458999999999999999999997654211 1223333333343 3678999999999642 2223
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|+++.-+.. ....++...... ....|+++|+||+|+..
T Consensus 84 ~~~~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 84 WERYCRGVSAIVYMVDAADQEKIE--ASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 334567889999999997543322 222333333221 13458999999999875
No 59
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.68 E-value=2.1e-16 Score=115.31 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=73.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
..+|+++|++|+|||||+|+|++...... ..++.+.......+...+ ...+.+|||||........
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~----------- 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT----------- 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH-----------
Confidence 47999999999999999999997764221 122222223233333312 2478899999976543221
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
...+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+.
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDME 121 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCC
Confidence 234567899999999974432222 345555555432 235899999999984
No 60
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.67 E-value=2e-16 Score=116.39 Aligned_cols=122 Identities=15% Similarity=0.096 Sum_probs=75.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|+|++........ +.++.......+...+ ...+.+|||||...+...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------- 72 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYK--QTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM--------- 72 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHH--HTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT---------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCC--CceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch---------
Confidence 345899999999999999999999875421111 1111222222333322 268999999997654321
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ..++..+....... ..+++++|+||+|+..
T Consensus 73 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 73 --LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp --HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred --hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 2234567899999999985433222 34455555432211 1234899999999864
No 61
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.67 E-value=2.4e-16 Score=115.92 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=74.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|.+|+|||||+|+|++...... .....+.......+.. ++ ..+.+|||||..... ..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~~ 79 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFR-----------SL 79 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHH-----------HH
Confidence 47999999999999999999997654221 2222333333333333 33 478999999965422 11
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+.. ...++..+..... ...|+++|+||+|+..
T Consensus 80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 80 IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSD 133 (179)
T ss_dssp SHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGG
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccc
Confidence 223345679999999997432222 1344444444332 2358999999999875
No 62
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=120.33 Aligned_cols=119 Identities=16% Similarity=0.124 Sum_probs=70.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
....+|+++|.+|+|||||+|+|++...........+.+... ..+... ....+.+|||||..... .
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~-----------~ 92 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLIVDGERTVLQLWDTAGQERFR-----------S 92 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEE--EEEEETTEEEEEEEEECTTCTTCH-----------H
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEE--EEEEECCEEEEEEEEECCCCcchh-----------h
Confidence 445899999999999999999999775422111111112211 222221 22468999999975421 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
.....+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+.
T Consensus 93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccc
Confidence 22233456799999999975433222 344555554322 235899999999986
No 63
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.67 E-value=1e-15 Score=112.16 Aligned_cols=120 Identities=21% Similarity=0.172 Sum_probs=68.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|++|+|||||+|+|++....... ...+.+.... .+.. ++ ..+.+|||||..... ...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~--~~~~-~~~~~~~~~~D~~g~~~~~---------~~~ 69 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYER--TLTV-DGEDTTLVVVDTWEAEKLD---------KSW 69 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEE--EEEE-TTEEEEEEEECCC----------------CH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEE--EEEE-CCEEEEEEEEecCCCCccc---------hhh
Confidence 3589999999999999999999987653221 1222232222 2222 33 368899999975421 112
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+... ..++..+.+.. .....|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH-QADHVPIILVGNKADLAR 125 (175)
T ss_dssp HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTT
T ss_pred hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhcc
Confidence 22345677899999999985433222 23334444321 122458999999999875
No 64
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.67 E-value=5.3e-16 Score=114.23 Aligned_cols=121 Identities=22% Similarity=0.234 Sum_probs=74.2
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHH
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE 92 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~ 92 (230)
+.....+|+++|.+|+|||||+|+|++...... ..+ |....+......++ ..+.+|||||.........
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~-t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~----- 75 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD---YDP-TIEDSYTKICSVDGIPARLDILDTAGQEEFGAMRE----- 75 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS---CCT-TCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHH-----
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccc---cCC-CcCceEEEEEEECCEEEEEEEEECCCchhhHHHHH-----
Confidence 445568999999999999999999998753211 111 22222222111243 4788999999765432211
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|+++..+... ..++..+.+... ....|+++|+||+|+..
T Consensus 76 ------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 76 ------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES 128 (181)
T ss_dssp ------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGG
T ss_pred ------HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 22345689999999984322221 334444433322 22358999999999875
No 65
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=6.2e-16 Score=116.51 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=77.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||+|+|++..... .....++.......+.. ++ ..+.+|||||... +..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~ 90 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP--GQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRS 90 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT--TCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 34799999999999999999999765421 11222222332223333 34 4789999999642 224
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAE 145 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence 45567788999999999975432221 345555555422 2358999999999864
No 66
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.6e-15 Score=112.66 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=74.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|.+|+|||||+|+|++.......+ |.......+.. ++..+.+|||||..... ..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 76 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVI-NNTRFLMWDIGGQESLR-----------SS 76 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-----CSCSSCEEEEE-TTEEEEEEECCC----C-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcC-----CCccceEEEEE-CCEEEEEEECCCCHhHH-----------HH
Confidence 345899999999999999999999766532211 22222233333 67899999999986432 11
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++-+... ..++..+.... .....|+++|+||+|+..
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTT
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcC
Confidence 2234577899999999986543332 23333333221 013468999999999875
No 67
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.67 E-value=3.9e-16 Score=116.43 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=74.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|+|++....... ....+.......+.. ++ ..+.+|||||........
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~-------- 87 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSIT-------- 87 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCC--------
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhH--------
Confidence 34579999999999999999999987642221 122222222222332 33 478999999976543221
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|+++..+... ..++..+..... ...|+++|+||+|+..
T Consensus 88 ---~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 88 ---RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLES 140 (191)
T ss_dssp ---HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred ---HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCC
Confidence 234567899999999974322222 344445544322 2458999999999864
No 68
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=3.4e-16 Score=117.28 Aligned_cols=119 Identities=23% Similarity=0.198 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC--CeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||+|+|++........ .|....+......+ ...+.+|||||..... .
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~ 71 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYI----PTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-----------A 71 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTS----CCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-----------H
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCccc----CccccceeEEEEECCEEEEEEEEeCCChHHhH-----------H
Confidence 45899999999999999999999765422111 12211111111113 2478899999975421 1
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+... ..++..+.+..+.....|+++|+||+|+..
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 22233445799999999974322222 345555555443323458999999999875
No 69
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.67 E-value=4e-16 Score=117.62 Aligned_cols=122 Identities=14% Similarity=0.099 Sum_probs=77.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC-CeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
....+|+++|.+|+|||||+|+|++..... ......+.......+.... ...+.+|||||.......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------- 73 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL---------- 73 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh----------
Confidence 455899999999999999999999876422 1222223333333333212 247899999997543321
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+..
T Consensus 74 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 74 -GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp -CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred -HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 1245678899999999975432222 3444445444321 12458999999999874
No 70
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.67 E-value=5.3e-16 Score=124.28 Aligned_cols=125 Identities=19% Similarity=0.178 Sum_probs=83.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH-HHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI-VKCI 97 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~-~~~~ 97 (230)
..+|+++|.+|||||||+|++++....... ...+.|....+......++..+.+|||||...+ ...+ ....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~ 74 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-------MENYFTKQK 74 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-------HHHHHTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHHH-------hhhhhhhHH
Confidence 479999999999999999999887422111 134456666665555435678999999996421 1111 2233
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+.++|++++|+|++++-+..+. .+..++..........|+++|+||+|+..
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 4556789999999999865544442 34444444332223458999999999875
No 71
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.67 E-value=7.2e-16 Score=111.87 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
.+|+++|.+|+|||||+|++++...... ..|.......+.. .+..+.+|||||.... ......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChhh-----------HHHHHH
Confidence 3799999999999999999987654211 1133333333333 5678999999997531 133345
Q ss_pred hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
.+..+|++++|+|++++-+.. ....++...... ....|+++|+||+|+..
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVN--EAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 678899999999998543222 222333333221 12458999999999875
No 72
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.67 E-value=3.5e-16 Score=114.99 Aligned_cols=120 Identities=18% Similarity=0.070 Sum_probs=76.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||+|+|++....... .+..+.......+.. ++ ..+.+|||||... +..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~ 71 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRS 71 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhh
Confidence 4589999999999999999999976542111 122222222222332 33 4789999999643 123
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|+++..+... ..++..+...... ....|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 44567788999999999985432222 3455555554321 13458999999999863
No 73
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.67 E-value=5.2e-16 Score=115.53 Aligned_cols=120 Identities=15% Similarity=0.111 Sum_probs=76.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|+|++...... .....+.......+.. ++ ..+.+|||||... +.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~ 83 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDR--TEATIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------FR 83 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSS--CCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------HH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCCcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------hh
Confidence 4558999999999999999999997654222 1222222222222332 33 4789999999532 11
Q ss_pred -HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 -KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 -~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|+++..+... ..++..+.+... ....|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 84 KSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS 141 (189)
T ss_dssp TTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG
T ss_pred hhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 223345678899999999984332222 345555555431 22458999999999864
No 74
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.67 E-value=1.2e-15 Score=113.96 Aligned_cols=136 Identities=9% Similarity=0.054 Sum_probs=81.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEE---e-eCCeEEEEEeCCCCCCCCCCc
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTV---L-KDGQVVNVIDTPGLFDFSAGS 86 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~---~-~~~~~~~liDtPG~~~~~~~~ 86 (230)
....+|+++|.+|||||||++.+.+......... ....|....+.... . .....+.+|||||.....
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--- 88 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN--- 88 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence 3458999999999999999999887643211110 01122222222111 1 123478999999976533
Q ss_pred HHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccceEEEEEeCCCCCCCC-hhhHHHHh
Q 026970 87 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELEDN-DETLEDYL 161 (230)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ivv~tk~D~~~~~-~~~~~~~l 161 (230)
.....++..+|++++|+|+++.....+...+..+...+. .....|+++|+||+|+.... ...+.+++
T Consensus 89 --------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 160 (198)
T 3t1o_A 89 --------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVV 160 (198)
T ss_dssp --------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred --------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHH
Confidence 333356788999999999984443334444433333221 12345899999999987531 33455555
Q ss_pred cc
Q 026970 162 GR 163 (230)
Q Consensus 162 ~~ 163 (230)
+.
T Consensus 161 ~~ 162 (198)
T 3t1o_A 161 DP 162 (198)
T ss_dssp CT
T ss_pred Hh
Confidence 53
No 75
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.67 E-value=1.4e-15 Score=112.43 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=74.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|++|||||||+|++++.......+ |.......+.. ++..+.++||||.......
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~----------- 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETLSY-KNLKLNVWDLGGQTSIRPY----------- 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-----STTCCEEEEEE-TTEEEEEEEEC----CCTT-----------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-----cCccceEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence 455899999999999999999999776522211 21122233333 5789999999998654322
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ...++...... ....|+++|+||+|+..
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 2355678899999999985544332 22333443322 23468999999999875
No 76
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.67 E-value=5.7e-16 Score=130.61 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=66.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+|+++|.+|+|||||+|+|++....... ...++|.......+.. ++..+.+|||||+.++....+ ........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~ve---~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEEIE---HEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhHHH---HHHHHHHH
Confidence 468999999999999999999988542221 2344555554444554 788999999999876331111 11112233
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
..+..+|++++|+|+++..+.... ....++.. +. ..|+++|+||+|+....
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~---~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAA-HP---AAKFLTVANKLDRAANA 359 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CT---TSEEEEEEECTTSCTTT
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cC---CCCEEEEEECcCCCCcc
Confidence 466789999999999877665321 22222222 22 35899999999998643
No 77
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.67 E-value=4.2e-16 Score=113.27 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=71.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
+..+|+++|.+|+|||||+|+|++...... ..+++.......+.. ++ ..+.+|||||..... .
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----------~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA-----------A 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CH-----------H
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCC---CCCCcceEEEEEEEE-CCEEEEEEEEECCCcchhH-----------H
Confidence 348999999999999999999997764211 111111111122222 33 478899999965321 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGG
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccc
Confidence 22233456799999999984432222 344455555432 12458999999999865
No 78
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.67 E-value=1.6e-15 Score=112.81 Aligned_cols=116 Identities=15% Similarity=0.101 Sum_probs=77.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|.+|+|||||+|++++.......+ |.......+.. ++..+.+|||||.......
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~----------- 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQY-KNISFEVWDLGGQTGVRPY----------- 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEEE-TTEEEEEEEECCSSSSCCC-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence 345899999999999999999998766432211 22222333333 5789999999998754422
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++-+... ...++...... ....|+++|+||+|+..
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 1245678899999999985543332 22233333221 12458999999999976
No 79
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.67 E-value=4.3e-16 Score=113.28 Aligned_cols=117 Identities=17% Similarity=0.165 Sum_probs=72.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|.+|+|||||+|+|++...... .. .|....+. ..... ....+.+|||||...... .
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~ 67 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEK--YD--PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-----------M 67 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCS--CC--CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-----------H
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCC--CC--CCccceEEEEEEECCEEEEEEEEECCChHHHHH-----------H
Confidence 47999999999999999999997654211 11 12222221 12221 234788999999765431 1
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+..
T Consensus 68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 122 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGG
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccc
Confidence 1123345689999999985422222 344455555432 22458999999999865
No 80
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.66 E-value=2.4e-16 Score=119.99 Aligned_cols=120 Identities=21% Similarity=0.223 Sum_probs=75.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|+|++...........+.+. .........+ ..+.+|||||.........
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------- 79 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVN--HPVTFLDDQGNVIKFNVWDTAGQEKKAVLKD------- 79 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEE--EEEEEEBTTSCEEEEEEEEECSGGGTSCCCH-------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceee--EEEEEEeCCCcEEEEEEEecCCchhhchHHH-------
Confidence 3458999999999999999999997764221111111111 1111211122 5789999999765432222
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+..
T Consensus 80 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 80 ----VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN--EAPIVVCANKIDIKN 131 (218)
T ss_dssp ----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS--SSCEEEEEECTTCC-
T ss_pred ----HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcc
Confidence 34567899999999985543332 3455556555432 248999999999875
No 81
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.66 E-value=6.8e-16 Score=112.24 Aligned_cols=119 Identities=20% Similarity=0.056 Sum_probs=62.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+|+++|.+|+|||||+|++++....... ...+.+.. ....+. .....+.++||||...+. ....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~~i~D~~g~~~~~-----------~~~~ 67 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTYD-RSIVVD-GEEASLMVYDIWEQDGGR-----------WLPG 67 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE-EEEEET-TEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-CccccceE-EEEEEC-CEEEEEEEEECCCCccch-----------hhhh
Confidence 379999999999999999999987642221 11222221 111111 123468899999976432 2233
Q ss_pred hhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
.++..+|++++|+|++++-+... ..++..+.+.. .....|+++|+||+|+...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS
T ss_pred hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccc
Confidence 45577899999999985432222 23333343321 1234589999999998753
No 82
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.66 E-value=2.4e-15 Score=112.18 Aligned_cols=116 Identities=9% Similarity=0.029 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+++|++|||||||++++++...... ..|.......+.. ++..+.++||||...... ..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~~ 84 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQARR-----------LW 84 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEEE-TTEEEEEEECCCSGGGTT-----------SG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEEE-CCEEEEEEECCCCHHHHH-----------HH
Confidence 347999999999999999999997654211 1233333334443 668999999999865332 22
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++..+|++++|+|++++-+... ..++..+.+.. .....|+++|+||+|+..
T Consensus 85 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 85 KDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp GGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTT
T ss_pred HHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcC
Confidence 355678899999999985543322 23333332211 123458999999999875
No 83
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.66 E-value=6.6e-16 Score=112.09 Aligned_cols=117 Identities=18% Similarity=0.165 Sum_probs=71.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|++|+|||||+|++++...... .. +.+.......... ++ ..+.++||||..... ..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~-~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----------~~ 67 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEK--YD-PTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SM 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSC--CC-TTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCccc--CC-CCcceeEEEEEEE-CCEEEEEEEEECCCchhhH-----------HH
Confidence 47999999999999999999997654221 11 1111111222222 33 358899999975421 11
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccc
Confidence 2233445689999999984332222 334444444332 12458999999999864
No 84
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.66 E-value=7.3e-16 Score=113.97 Aligned_cols=124 Identities=23% Similarity=0.203 Sum_probs=74.1
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHH
Q 026970 12 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFV 89 (230)
Q Consensus 12 ~~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~ 89 (230)
.+.......+|+++|.+|+|||||+|+|++...... ... |....+......++. .+.+|||||........
T Consensus 11 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--- 83 (183)
T 3kkq_A 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDD--YDP--TIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR--- 83 (183)
T ss_dssp ---CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSC--CCT--TCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSH---
T ss_pred CCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCC--CccceeEEEEEeCCcEEEEEEEECCCchhhHHHH---
Confidence 344455668999999999999999999997643211 111 222222222222444 45679999976533221
Q ss_pred HHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++..+|++++|+|++++.+... ..++..+.+... ....|+++|+||+|+..
T Consensus 84 --------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 84 --------EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMH 137 (183)
T ss_dssp --------HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCST
T ss_pred --------HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchh
Confidence 123345799999999985422221 344444444322 22458999999999865
No 85
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.66 E-value=6.7e-16 Score=115.20 Aligned_cols=120 Identities=10% Similarity=0.119 Sum_probs=71.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
...++|+++|.+|+|||||+|+|++.......... ..+... .. .+..+.+|||||......... ..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~-~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~~~-------~~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-EPLSAA-----DY-DGSGVTLVDFPGHVKLRYKLS-------DY 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCHH-------HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccC-CCceee-----ee-cCCeEEEEECCCCchHHHHHH-------HH
Confidence 45589999999999999999999987542211111 111111 11 456788999999876543222 22
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-----cccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK-----KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~-----~~~~~~ivv~tk~D~~~ 151 (230)
+......+|++++|+|++ ...........++...+.. ....|+++|+||+|+..
T Consensus 112 ~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDST-VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp HHHHGGGEEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred HHhhcccCCEEEEEEECC-CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 333334579999999997 1111222222333332211 12458999999999986
No 86
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.66 E-value=1.2e-15 Score=113.51 Aligned_cols=121 Identities=12% Similarity=0.018 Sum_probs=76.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeee-eEEEEeeC----------CeEEEEEeCCCCCCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKD----------GQVVNVIDTPGLFDFSAG 85 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~----------~~~~~liDtPG~~~~~~~ 85 (230)
....+|+++|.+|+|||||+|+|++....... ......... ...+.... ...+.++||||...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---- 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKF--ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER---- 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG----
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCc--ccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH----
Confidence 34589999999999999999999976542111 111111111 11222211 24799999999743
Q ss_pred cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 86 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+.......+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+..
T Consensus 83 -------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 83 -------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLED 141 (195)
T ss_dssp -------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGG
T ss_pred -------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 12334566788999999999975433222 344444544322 12458999999999865
No 87
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.66 E-value=4.5e-16 Score=124.30 Aligned_cols=122 Identities=19% Similarity=0.250 Sum_probs=82.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCC-CCCCCcHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~~~~~~~~~ 97 (230)
...|+++|++|+|||||+|+|+|....... ...++|.......+. .++..+.++||||+. .+ .......+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~-~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~ 82 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHT-EGAYQAIYVDTPGLHMEE---KRAINRLMNKAA 82 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEE-ETTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEE-ECCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence 368999999999999999999998753222 223344433333233 367889999999985 21 111222233333
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|+++ ++..+...++.+.. ...|+++|+||+|...
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCc
Confidence 456678899999999986 88777655554432 2358999999999875
No 88
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.66 E-value=5.8e-16 Score=114.66 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||+|+|++...... ..+++.......+.. ++ ..+.+|||||..... .
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------~ 81 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA-----------A 81 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCS---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------H
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCc---CCCccceEEEEEEEE-CCEEEEEEEEECCCCcccH-----------H
Confidence 458999999999999999999997764211 111122221222222 33 378899999976421 1
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+..
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 137 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGG
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 22233445799999999984422222 344455555432 12458999999999865
No 89
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.66 E-value=6.5e-16 Score=116.32 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=73.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||+|+|++...... .....+.......+.. ++ ..+.+|||||.... ..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~ 93 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSER--QGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------RT 93 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------HH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCC--CCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HH
Confidence 347999999999999999999987654211 1111112222222332 33 48899999996431 12
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSE 148 (201)
T ss_dssp HHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCcccc
Confidence 33455678899999999974432221 345555555432 2358999999999875
No 90
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.1e-15 Score=116.85 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=74.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+|+|.+|+|||||+|+|++....... ....+.......+.. ++ ..+.+|||||...+...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------- 78 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS--KSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAI--------- 78 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCC---------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhh---------
Confidence 34589999999999999999999987642221 122222222222332 34 47899999997654322
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..
T Consensus 79 --~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 79 --TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAH 132 (223)
T ss_dssp --CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred --HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 2256678899999999985433222 344455544322 2358999999999864
No 91
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.66 E-value=2e-15 Score=118.91 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
.++|+++|++|+|||||+|+|+|...... ..+++|.......+.+ .+..+.+|||||+.+....... ..+...+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~- 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVG--NWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID--ELIARNF- 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEE--ECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH--HHHHHHH-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH--HHHHHHh-
Confidence 47999999999999999999999865222 2344566555555554 6778999999999876543321 1122211
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
.....+|++++|+|+++ . .....+...+.+. + ..|+++|+||+|+.
T Consensus 77 ~~~~~~d~vi~v~D~~~-~-~~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTC-L-MRNLFLTLELFEM-E---VKNIILVLNKFDLL 122 (271)
T ss_dssp HHTTCCSEEEEEEEGGG-H-HHHHHHHHHHHHT-T---CCSEEEEEECHHHH
T ss_pred hhccCCcEEEEEecCCc-c-hhhHHHHHHHHhc-C---CCCEEEEEEChhcC
Confidence 12367899999999984 2 2223333333332 1 15899999999964
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.65 E-value=1.5e-15 Score=113.56 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=72.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|.+|+|||||+|++++...... ..|.......+.. .+..+.+|||||...... .
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 89 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKIRP-----------L 89 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 4558999999999999999999987764221 1132233333333 678999999999865331 1
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ...++...... ....|+++|+||+|+..
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 2234457799999999985533222 22333333221 12458999999999875
No 93
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.65 E-value=5.1e-15 Score=118.93 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=75.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCC---CCc---cceee---------------------------------
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS---SSG---VTSTC--------------------------------- 58 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~---~~~---~t~~~--------------------------------- 58 (230)
..++|+++|.+|+|||||+|+|+|....+.... ..+ .+...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 457999999999999999999999875322110 000 00000
Q ss_pred ------------------eeEEEEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCCccEEEEEEeC-CCCC
Q 026970 59 ------------------EMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRF 117 (230)
Q Consensus 59 ------------------~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~d~-~~~~ 117 (230)
....+....+..+.||||||+...... .......+......++..+|++++|+|+ +..+
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 000012224468999999999752210 0112234445555566788999999987 4344
Q ss_pred CHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 118 SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 118 ~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
...+ ..+++.+.. ...|+++|+||+|+...
T Consensus 183 ~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 183 ANSDALQLAKEVDP-----EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp TTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCS
T ss_pred hhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCc
Confidence 4332 234433322 23589999999999864
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.65 E-value=1.8e-15 Score=112.00 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=75.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|++|||||||+++|++....... .|.......+.. ++..+.+|||||.... ...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~-----~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIGGQRKI-----------RPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECSSCGGG-----------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCccc-----CcCCeEEEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence 44589999999999999999999987532111 122222223333 5788999999996531 123
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
...++..+|++++|+|++++-+... ...++...+.. ....|+++|+||+|+..
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 3455678899999999985433222 22233333221 13458999999999876
No 95
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.65 E-value=1.2e-15 Score=115.99 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=76.5
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKE 92 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (230)
+.....+|+++|.+|||||||+++|++...... ..+ |....+. .+... ....+.+|||||.....
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------- 89 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPET--YVP--TVFENYTACLETEEQRVELSLWDTSGSPYYD--------- 89 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSS--CCC--CSEEEEEEEEEC--CEEEEEEEEECCSGGGT---------
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCC--cCC--eeeeeEEEEEEECCEEEEEEEEECCCCHhHH---------
Confidence 334568999999999999999999998764211 111 2222221 12221 23578899999975432
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|++++-+... ..++..+..... ..|+++|+||+|+..
T Consensus 90 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 90 --NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRT 145 (214)
T ss_dssp --TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGG
T ss_pred --HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 223356788999999999985543333 455566665432 358999999999875
No 96
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.65 E-value=1.3e-15 Score=110.33 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=71.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|.+|+|||||+|++++...... ..+.+.......... ++ ..+.+|||||..... ..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~ 67 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE---CDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS-----------AM 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC-----------HH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccc---cCCccceEEEEEEEE-CCEEEEEEEEECCCchhhh-----------HH
Confidence 36899999999999999999997754221 111111111122222 33 457899999976532 11
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhh
Confidence 1223345689999999974422222 344444544432 12358999999999875
No 97
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=1.3e-15 Score=113.85 Aligned_cols=117 Identities=17% Similarity=0.074 Sum_probs=76.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+++|++...... ..+++.......+.. ++ ..+.+|||||...+..
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~---------- 81 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEE---YVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR---------- 81 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCS---CCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTT----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCcccceeEEEEEE-CCEEEEEEEEECCCCcchhH----------
Confidence 3457999999999999999999997753211 111111111112222 33 5788999999876442
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+... ..++..+.+... ..|+++|+||+|+..
T Consensus 82 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 82 -LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRD 136 (194)
T ss_dssp -TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTT
T ss_pred -HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 22356778999999999985432222 245555655432 358999999999876
No 98
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.65 E-value=1.1e-15 Score=114.78 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=75.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|++|||||||+|++++....... .|.......+.. ++..+.+|||||...... .
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~-----------~ 85 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLGGHIQARR-----------V 85 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CC-----------G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccC-----CCCCceeEEEEE-CCEEEEEEECCCcHhhHH-----------H
Confidence 34579999999999999999999987642111 122222233333 568999999999764332 2
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCCC-ChhhHHHHhc
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLG 162 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~-~~~~~~~~l~ 162 (230)
...++..+|++++|+|++++-+... ..++..+.+.. .....|+++|+||+|+... ..+.+.+++.
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 152 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAISEERLREMFG 152 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccCCHHHHHHHhC
Confidence 2345678899999999985433222 22333232211 1234589999999998642 1234444443
No 99
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.65 E-value=3.3e-15 Score=116.70 Aligned_cols=120 Identities=22% Similarity=0.263 Sum_probs=80.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+|+++|.+|+|||||+|+|+|....... .+++|.......+.. .+..+.+|||||......... .+.+...+.
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~--~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVAN--WPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHHH
Confidence 478999999999999999999998754322 345666655555543 678999999999987654321 122222211
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
. ...+|++++|+|+++ +. ....+...+.+. ..|+++|+||+|+..
T Consensus 80 ~-~~~~d~ii~V~D~t~-~~-~~~~~~~~l~~~-----~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 80 L-KGDADLVILVADSVN-PE-QSLYLLLEILEM-----EKKVILAMTAIDEAK 124 (258)
T ss_dssp H-HSCCSEEEEEEETTS-CH-HHHHHHHHHHTT-----TCCEEEEEECHHHHH
T ss_pred h-hcCCCEEEEEeCCCc-hh-hHHHHHHHHHhc-----CCCEEEEEECcCCCC
Confidence 1 157899999999984 32 222333333332 358999999999864
No 100
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=2.8e-16 Score=117.23 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=76.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
+...+|+|+|.+|+|||||+|+|++...........+.+......... .....+.+|||||.. .+...
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~-----------~~~~~ 88 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-EKRVKLQIWDTAGQE-----------RYRTI 88 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET-TTTEEEEEECHHHHH-----------HCHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC-CEEEEEEEEeCCChH-----------HHHHH
Confidence 345799999999999999999999765321111111222222222121 245689999999942 22344
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++-+.. ...++..+..... ...|+++|+||+|+..
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEE 142 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence 455677889999999998532222 1345555555322 2458999999999864
No 101
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.65 E-value=6.8e-16 Score=116.46 Aligned_cols=118 Identities=19% Similarity=0.111 Sum_probs=74.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
..+..+|+++|.+|+|||||++++++...... ..+++.......+.. ++. .+.+|||||...+.
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~---------- 92 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD---------- 92 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC----CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGT----------
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCC---cCCeecceeEEEEEE-CCEEEEEEEEECCCchhhH----------
Confidence 34568999999999999999999997654211 112222222222222 333 55699999985433
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|++++.+.... .++..+.... ...|+++|+||+|+..
T Consensus 93 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 93 -RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRD 148 (204)
T ss_dssp -TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHT
T ss_pred -HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhcc
Confidence 2233567789999999999854433332 4555555543 2358999999999876
No 102
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.65 E-value=5.4e-16 Score=116.64 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=71.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|+|++...... .....+.......+.. ++ ..+.+|||||.....
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~----------- 88 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQD--SNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFR----------- 88 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHS-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCcc--CCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHH-----------
Confidence 3458999999999999999999998764222 1122222222222322 33 578999999953221
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..
T Consensus 89 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 89 SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDP 144 (200)
T ss_dssp CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGG
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccc
Confidence 122245567899999999985432222 344444444322 2358999999999864
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.65 E-value=2.9e-15 Score=109.16 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=74.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+|+++|++|+|||||+|+|++...... ..++.|.......+.. ++..+.+|||||...+.... ..+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeecc--CCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHH
Confidence 37899999999999999999998754322 1223344433333443 56889999999988654322 1122222111
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
. ..++|++++|+|+++ . .....++..+.+. ..|+++|+||+|+..
T Consensus 78 ~-~~~~~~~i~v~D~~~-~-~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 78 I-NEKPDLVVNIVDATA-L-ERNLYLTLQLMEM-----GANLLLALNKMDLAK 122 (165)
T ss_dssp H-HHCCSEEEEEEETTC-H-HHHHHHHHHHHHT-----TCCEEEEEECHHHHH
T ss_pred h-cCCCCEEEEEecCCc-h-hHhHHHHHHHHhc-----CCCEEEEEEchHhcc
Confidence 1 126799999999973 2 1223344444331 358999999999753
No 104
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.65 E-value=1.6e-15 Score=114.27 Aligned_cols=121 Identities=19% Similarity=0.103 Sum_probs=55.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC--ccccccCCCCccceeeeeEEEEeeC---CeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR--RAFKSRASSSGVTSTCEMQRTVLKD---GQVVNVIDTPGLFDFSAGSEFVGKE 92 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~--~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~~ 92 (230)
...+|+++|.+|+|||||+|+|++. .. .....+.+........+...+ ...+.+|||||.. .
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~ 85 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKF--LKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD-----------L 85 (208)
T ss_dssp EEEEEEEC------------------------------------CEEEECTTSSEEEEEEEEETTTTH-----------H
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcc--cCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-----------H
Confidence 4579999999999999999999987 32 111111111122222333322 3579999999963 2
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEeCCCCCC
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~ 151 (230)
+.......+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 86 YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 33445567788999999999985433222 3455555554220 12458999999999875
No 105
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=2.7e-16 Score=117.35 Aligned_cols=121 Identities=16% Similarity=0.140 Sum_probs=74.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
....+|+++|.+|+|||||+|+|++....... ....+.......+... ....+.+|||||.......
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 80 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL---------- 80 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccC--CCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh----------
Confidence 34589999999999999999999987642221 1222222222222221 2357899999997643321
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....+..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+..
T Consensus 81 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 81 -TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC-TRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp -HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCC-SCSCCEEEEEEECTTSSS
T ss_pred -hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CcCCCcEEEEEECCcCcc
Confidence 2244567899999999974422221 23333333321 112458999999999854
No 106
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.64 E-value=1.5e-15 Score=113.05 Aligned_cols=119 Identities=19% Similarity=0.188 Sum_probs=70.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
-...+|+++|.+|+|||||+|+|++...... ..+.+.......+.. ++ ..+.+|||||.....
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 83 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS----------- 83 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC----------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccc---cCCccceEEEEEEEE-CCEEEEEEEEECCChHHHH-----------
Confidence 3457999999999999999999997754211 111122211122222 33 358899999965322
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+..
T Consensus 84 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 84 AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp ------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC
T ss_pred HHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCc
Confidence 233356678899999999975433222 344444544332 12358999999999875
No 107
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.64 E-value=1.7e-15 Score=113.20 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|++++...... ...|....+......++. .+.+|||||.....
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------- 85 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTA----YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD----------- 85 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-----------
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCc----cCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-----------
Confidence 4458999999999999999999998764211 111222222222222443 56899999965432
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|++++.+... ..++..+..... ..|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRK 141 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCC
T ss_pred HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 223356778999999999985433333 345555554322 358999999999874
No 108
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.64 E-value=2.1e-15 Score=113.44 Aligned_cols=117 Identities=19% Similarity=0.143 Sum_probs=75.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|++++...... ..+.++.... ..+.. ++ ..+.+|||||.....
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~----------- 87 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYI-ADIEV-DGKQVELALWDTAGQEDYD----------- 87 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSS--CCCSSCCCCE-EEEEE-TTEEEEEEEECCCCSGGGT-----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCcccceEE-EEEEE-CCEEEEEEEEECCCchhHH-----------
Confidence 4458999999999999999999998764221 1111111111 11222 33 478899999975432
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|++++.+... ..++..+..... ..|+++|+||+|+..
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQ 143 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTT
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhc
Confidence 222346678899999999985322222 345555555322 358999999999876
No 109
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.64 E-value=1.5e-15 Score=112.64 Aligned_cols=117 Identities=16% Similarity=0.101 Sum_probs=74.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeee-EEEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|+|++...... .. .|....+ ..+... ....+.+|||||...+.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------- 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN--YV--PTVFENYTASFEIDTQRIELSLWDTSGSPYYD----------- 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSS--CC--CCSEEEEEEEEECSSCEEEEEEEEECCSGGGT-----------
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCC--CC--CccceeEEEEEEECCEEEEEEEEECCCChhhh-----------
Confidence 3458999999999999999999998654211 11 1222111 122221 23478999999975432
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|++++.+... ..++..+..... ..|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 125 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhc
Confidence 122346678999999999985433222 234455554422 358999999999875
No 110
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.64 E-value=3.5e-16 Score=131.45 Aligned_cols=121 Identities=23% Similarity=0.245 Sum_probs=75.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+|+++|++|+|||||+|+|++....... ...++|.......+.. ++..+.+|||||+.++....+ ..-.....
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve---~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVE---KIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHH---HHHHHHHh
Confidence 468999999999999999999987542221 2344555444333443 788999999999865321111 11112223
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|++++.+..+..+++.+.. .|+++|+||+|+..
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~ 344 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVE 344 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSC
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCc
Confidence 45678999999999987888777655554432 38999999999876
No 111
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.64 E-value=1.4e-15 Score=112.46 Aligned_cols=116 Identities=19% Similarity=0.086 Sum_probs=74.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||++++++....... .+++.......... ++ ..+.+|||||..... .
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~ 68 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD-----------R 68 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSC---CCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGGT-----------T
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCc---CCcccceeEEEEEE-CCEEEEEEEEECCCCHhHH-----------H
Confidence 3479999999999999999999976542111 11111111112222 33 356799999986432 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+.... .++..+..... ..|+++|+||+|+..
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 123 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHT
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccc
Confidence 223456788999999999854333332 35555555432 458999999999875
No 112
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=114.78 Aligned_cols=116 Identities=21% Similarity=0.140 Sum_probs=64.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||+|+|++...... .. +++.......+.. ++ ..+.+|||||..... .
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~--~~-~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~-----------~ 97 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPES--YT-PTVFERYMVNLQV-KGKPVHLHIWDTAGQDDYD-----------R 97 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------C-CCCCEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCC--CC-CccceeEEEEEEE-CCEEEEEEEEECCCchhhh-----------H
Confidence 458999999999999999999998764211 11 1111111122222 33 378899999965422 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+... ..++..+..... ..|+++|+||+|+..
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRK 152 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGS
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhc
Confidence 23345678899999999985433222 134555554322 358999999999876
No 113
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.63 E-value=2e-14 Score=117.48 Aligned_cols=127 Identities=19% Similarity=0.102 Sum_probs=84.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
....+|+++|.+|||||||+|.|++...... .....|.......... .+..+.++||||+.+.......... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA--SYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIE--KQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE--CCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHH--HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHH--HHH
Confidence 3457999999999999999999998864222 2234455555444443 5678999999999764322111111 122
Q ss_pred HHhhcCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+......+|++++|+|+++.. +... ..++..+...++ ..|+++|+||+|+..
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVAD 294 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCC
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCC
Confidence 223345679999999987443 4333 556666666543 358999999999876
No 114
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1.8e-15 Score=113.23 Aligned_cols=118 Identities=20% Similarity=0.158 Sum_probs=73.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|+|++...... ..+ |....+. .+... ....+.+|||||... .
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~------- 89 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDP--TLESTYRHQATIDDEVVSMEILDTAGQED-----T------- 89 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCT--TCCEEEEEEEEETTEEEEEEEEECCCCCC-----C-------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCC--CCCceEEEEEEECCEEEEEEEEECCCCCc-----c-------
Confidence 4568999999999999999999998754221 111 2211221 12221 234688999999865 1
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+..
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDH 146 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGG
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECccccc
Confidence 112233345689999999984332222 344555555322 22458999999999865
No 115
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.63 E-value=8.5e-16 Score=127.57 Aligned_cols=128 Identities=20% Similarity=0.186 Sum_probs=84.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
+....++|+++|++|+|||||+|+|++....... ...++|.......+.......+.+|||||+.++..........
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~-- 106 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEK-- 106 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHH--
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHH--
Confidence 3455689999999999999999999988753222 2445566666665655344489999999998765432221122
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCCh
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 154 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (230)
....+..+|++++|+|+ ........++..+.+. ..|+++|+||+|+.....
T Consensus 107 --~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 107 --ARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp --HHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCC
T ss_pred --HHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccH
Confidence 22345678999999998 4566677777777764 348999999999986543
No 116
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=2.6e-15 Score=113.46 Aligned_cols=116 Identities=19% Similarity=0.130 Sum_probs=73.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||+|+|++...... ..+. +.......+.. ++ ..+.+|||||......
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t-~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 88 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPT-VFENYVADIEV-DGKQVELALWDTAGQEDYDR----------- 88 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC----------CCEEEEEEEE-TTEEEEEEEEECTTCTTCTT-----------
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCc-ccceEEEEEEE-CCEEEEEEEEECCCcHHHHH-----------
Confidence 347999999999999999999998764211 1111 11111112222 33 4788999999865432
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+... ..++..+..... ..|+++|+||+|+..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRS 143 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGG
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhc
Confidence 22245678899999999984322222 345555555322 358999999999876
No 117
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.63 E-value=1.3e-15 Score=111.11 Aligned_cols=119 Identities=23% Similarity=0.116 Sum_probs=66.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|.+|+|||||+|++++....... ....+.......+.. ++ ..+.+|||||....... .
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~----------~ 68 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW----------L 68 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC-----------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc--cCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchh----------h
Confidence 368999999999999999999876542221 122222222222332 33 46789999998653210 1
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...++..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+..
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 69 QDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR 123 (169)
T ss_dssp -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGG
T ss_pred hhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhh
Confidence 1122334699999999985322211 334444444322 12458999999999864
No 118
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.63 E-value=2.2e-15 Score=113.86 Aligned_cols=118 Identities=16% Similarity=0.095 Sum_probs=75.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEee-CCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
.....+|+++|.+|+|||||+|+|++...... . ..|....+. .+... ....+.+|||||...+.
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~--~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------- 90 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN--Y--VPTVFENYTASFEIDTQRIELSLWDTSGSPYYD---------- 90 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSS--C--CCCSEEEEEEEEESSSSEEEEEEEEECCSGGGT----------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCC--c--CCccceeEEEEEEECCEEEEEEEEeCCCcHhhh----------
Confidence 34568999999999999999999998754211 1 112222221 22221 23578999999975432
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......+..+|++++|+|++++.+... ..++..+.+... ..|+++|+||+|+..
T Consensus 91 -~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 91 -NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 146 (205)
T ss_dssp -TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred -HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhcc
Confidence 122346678999999999985433222 244455555422 358999999999874
No 119
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.63 E-value=2.1e-15 Score=113.06 Aligned_cols=124 Identities=23% Similarity=0.133 Sum_probs=72.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHH
Q 026970 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGK 91 (230)
Q Consensus 14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~ 91 (230)
.+.....+|+++|.+|||||||+|+|++........ .+++.......+.. ++ ..+.+|||||..... .
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~-------~ 87 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG-------G 87 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT--TTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG-------H
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCC--CCcccceEEEEEEE-CCEEEEEEEEecCCCccch-------h
Confidence 334566899999999999999999998754321111 11222222222222 33 367789999975421 1
Q ss_pred HHHHHHHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 92 EIVKCIGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+. ..++..+|++++|+|++++.+.. ...++..+..... ....|+++|+||+|+..
T Consensus 88 ~~~---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 88 WLR---DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR 144 (195)
T ss_dssp HHH---HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTT
T ss_pred hhH---HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccc
Confidence 111 12344679999999998543222 1344444444321 12458999999999875
No 120
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=119.23 Aligned_cols=119 Identities=20% Similarity=0.189 Sum_probs=72.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||+|+|++....... ....+.......+.. ++ ..+.+|||||........
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~-------- 99 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTIT-------- 99 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCS--------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHH--------
Confidence 44589999999999999999999987542211 122222333333333 34 478999999976544222
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+..
T Consensus 100 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 100 ---SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTT 152 (199)
T ss_dssp ---CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC-
T ss_pred ---HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCc
Confidence 245678899999999985433222 233333333211 2458999999999875
No 121
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.63 E-value=9.5e-14 Score=110.63 Aligned_cols=131 Identities=14% Similarity=0.116 Sum_probs=76.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccC---CC-Cc----------------------ccee-------------
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRA---SS-SG----------------------VTST------------- 57 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~---~~-~~----------------------~t~~------------- 57 (230)
...++|+++|.+|||||||+|+|+|....+... .. ++ .|..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 345899999999999999999999987532110 00 10 1100
Q ss_pred ----------eeeEEEEeeCCeEEEEEeCCCCCCCCC--CcHHHHHHHHHHHHhhcCCccEEE-EEEeCCCCCCHHHH-H
Q 026970 58 ----------CEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVL-VVFSVRSRFSQEEE-A 123 (230)
Q Consensus 58 ----------~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~v~d~~~~~~~~~~-~ 123 (230)
.....+.......+.||||||+..... ..+.....+......++..++.++ +|+|+++.++..+. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000011111246899999999875321 012222233344444555666555 78999766655442 2
Q ss_pred HHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 124 ALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 124 ~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
+++.+.. ...|+++|+||+|+..+
T Consensus 184 ~~~~~~~-----~~~~~i~V~NK~Dl~~~ 207 (299)
T 2aka_B 184 IAKEVDP-----QGQRTIGVITKLDLMDE 207 (299)
T ss_dssp HHHHHCT-----TCSSEEEEEECGGGSCT
T ss_pred HHHHhCC-----CCCeEEEEEEccccCCC
Confidence 3333221 23589999999999863
No 122
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.62 E-value=4.9e-15 Score=124.31 Aligned_cols=127 Identities=20% Similarity=0.195 Sum_probs=77.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH--HH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI--VK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~--~~ 95 (230)
...+|+++|++|||||||+|+|+|....... ...++|.......+.+ ++..+.+|||||+........+....+ ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 4589999999999999999999998643222 2344555544444544 778899999999853221110000000 00
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
. ...+..+|++++|+|+.+..+..+..+...+... ..++++|+||+|+...
T Consensus 257 ~-~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~-----~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 257 V-VDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-----GRASVVVFNKWDLVVH 307 (439)
T ss_dssp H-HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSTT
T ss_pred H-HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCCc
Confidence 1 1223456899999999877777765555544432 2489999999998863
No 123
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.62 E-value=6.6e-16 Score=117.89 Aligned_cols=121 Identities=20% Similarity=0.137 Sum_probs=75.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
.....+|+++|.+|||||||+|+++............+.+......... ..+..+.+|||||.........
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~-------- 82 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIKFNVWDTAGQEKFGGLRD-------- 82 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-TEEEEEEEEEECSGGGTSCCCH--------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCChHHHhHHHH--------
Confidence 3455899999999999999999965433211111222333333222221 1335789999999754432222
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++++|+|++++.+... ..++..+.+... ..|+++|+||+|+..
T Consensus 83 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 83 ---GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD 133 (221)
T ss_dssp ---HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred ---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence 34567899999999985433222 345555555432 358999999999875
No 124
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.62 E-value=5.7e-15 Score=120.90 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCcccee----------------------------------------
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST---------------------------------------- 57 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~---------------------------------------- 57 (230)
.-+.|+|+|.+|||||||+|+|+|....+.+.. .+|..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~--~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSG--IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSS--SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCC--cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 446999999999999999999999765333211 11100
Q ss_pred --------------eeeEEEEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHH
Q 026970 58 --------------CEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE 121 (230)
Q Consensus 58 --------------~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~ 121 (230)
.....+.......+.+|||||+...... .......+......++..+|++++|+++.+ .....
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~-~~~~~ 189 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPAN-QDLAT 189 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETT-SCGGG
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeeccc-CCcCC
Confidence 0011111123457899999999875321 223444555666667788999999997642 22222
Q ss_pred HHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 122 EAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 122 ~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
..++..+... . ....++++|+||+|+..+
T Consensus 190 ~~~~~l~~~~-~-~~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 190 SDAIKISREV-D-PSGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp CHHHHHHHHS-C-TTCTTEEEEEECGGGCCT
T ss_pred HHHHHHHHHh-c-ccCCCEEEEEeCCccCCC
Confidence 3344444443 2 123479999999999864
No 125
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=3.6e-15 Score=113.47 Aligned_cols=122 Identities=10% Similarity=0.169 Sum_probs=73.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
....++|+++|++|+|||||+|+|++......... ...+.... .....+.++||||..... ..+..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~-~~~~~~~~------~~~~~~~l~Dt~G~~~~~-------~~~~~ 74 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAAD------YDGSGVTLVDFPGHVKLR-------YKLSD 74 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCC-SSCEEETT------GGGSSCEEEECCCCGGGT-------HHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeee-cCceEEEE------eeCceEEEEECCCcHHHH-------HHHHH
Confidence 34568999999999999999999998764221111 11111111 144578999999986532 12223
Q ss_pred HHHhhcCCccEEEEEEeCC-C--CCCHHHHHHHHHHHHHhc--ccccceEEEEEeCCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVR-S--RFSQEEEAALHSLQTLFG--KKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~-~--~~~~~~~~~l~~l~~~~~--~~~~~~~ivv~tk~D~~~~ 152 (230)
++......+|++++|+|++ + .+... ..++..+..... .....|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 3333333478999999997 3 33322 233333332211 1124589999999999863
No 126
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.8e-15 Score=121.50 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+|+|+|.|+||||||+|+|++..... ...+++|..+....+.+ .+.++.|+||||+.............+...+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 3699999999999999999999987432 33456777777766665 78899999999998654444445555555544
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccceEEEEEeCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK-IFDYMIVVFTGGDEL 150 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~-~~~~~ivv~tk~D~~ 150 (230)
.+|++++|+|+.++. .+...+..-...++.. ...|.++++||.|..
T Consensus 149 ----~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 ----TCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp ----HCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred ----hcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 458999999997432 2233333222333432 345788999999963
No 127
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.62 E-value=5.3e-16 Score=125.62 Aligned_cols=126 Identities=19% Similarity=0.146 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
..|+|+|.+|||||||+|+|++..... .....+|.......+...++..+.++||||+.+.......+...+.+.+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i--~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i-- 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI-- 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH--
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCcc--ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH--
Confidence 368999999999999999999875422 2233455555555555534478999999997542222222334444333
Q ss_pred hcCCccEEEEEEeCCC---CCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRS---RFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~---~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..++++++|+|+++ +-...+ ..+...+..........|+++|+||+|+..
T Consensus 235 --~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 235 --ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp --HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred --HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 34589999999974 222222 344455555321123568999999999875
No 128
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.61 E-value=1.1e-14 Score=108.14 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=76.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+++|++|||||||+|+|++...+... .+++|.......+.. ++..+.+|||||...+..... ...+....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccC--CCCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHHH
Confidence 4589999999999999999999987643322 234455444444444 678999999999886543211 11222211
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
... ..+|++++|+|..+ + .....++..+.. ...|+++|+||+|+..
T Consensus 81 ~~~-~~~~~~i~v~d~~~-~-~~~~~~~~~~~~-----~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 81 IIN-EKPDLVVNIVDATA-L-ERNLYLTLQLME-----MGANLLLALNKMDLAK 126 (188)
T ss_dssp HHH-HCCSEEEEEEEGGG-H-HHHHHHHHHHHT-----TTCCEEEEEECHHHHH
T ss_pred Hhc-cCCCEEEEEecchh-H-HHHHHHHHHHHh-----cCCCEEEEEEhhhccc
Confidence 111 24789999999873 2 122233333322 2358999999999753
No 129
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.61 E-value=3.5e-15 Score=109.76 Aligned_cols=111 Identities=21% Similarity=0.160 Sum_probs=71.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeee-eEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
...+|+++|.+|||||||+|++++..... . .+ |.... ...+.. ++ ..+.+|||||... .
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~-~~--t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----~------- 67 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--L-EK--TESEQYKKEMLV-DGQTHLVLIREEAGAPD-----A------- 67 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--C-SS--CSSSEEEEEEEE-TTEEEEEEEEECSSSCC-----H-------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--c-CC--CcceeEEEEEEE-CCEEEEEEEEECCCCch-----h-------
Confidence 45899999999999999999999876522 1 11 21111 122222 33 4678999999753 1
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEeCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDEL 150 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~ 150 (230)
..+.++|++++|+|++++.+... ..+++++...... ....|+++|+||+|+.
T Consensus 68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 22345799999999985433333 3344445554321 1245899999999984
No 130
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.61 E-value=8.2e-15 Score=115.22 Aligned_cols=119 Identities=17% Similarity=0.185 Sum_probs=77.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
..+|+++|.+|+|||||+|+|+|...+... .+++|.......+.. +..+.+|||||......... .+.+...+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~--~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN--WPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCS--SSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 478999999999999999999997643332 235555544443332 66899999999987543221 122222221
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
. ...+|++++|+|+++ . .....+...+.+ ...|+++|+||+|+..
T Consensus 77 ~-~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 77 L-SQRADSILNVVDATN-L-ERNLYLTTQLIE-----TGIPVTIALNMIDVLD 121 (272)
T ss_dssp H-TTCCSEEEEEEEGGG-H-HHHHHHHHHHHH-----TCSCEEEEEECHHHHH
T ss_pred h-cCCCCEEEEEecCCc-h-HhHHHHHHHHHh-----cCCCEEEEEEChhhCC
Confidence 1 146899999999973 2 222333334433 1358999999999753
No 131
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.61 E-value=3.1e-15 Score=113.28 Aligned_cols=117 Identities=19% Similarity=0.113 Sum_probs=75.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||++.+++...... ..+++.......+.. ++ ..+.+|||||...+..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 72 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSR---------- 72 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSS---CCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCcc---CCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence 3458999999999999999999997654211 111111111112222 33 4789999999876432
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++-+... ..++..+..... ..|+++|+||+|+..
T Consensus 73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRD 127 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhh
Confidence 22346778999999999985433222 245555555432 358999999999865
No 132
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.61 E-value=3.9e-15 Score=127.07 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=84.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcccc----------------cc----CCCCccceeeeeEEEEeeCCeEEEEEeCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFK----------------SR----ASSSGVTSTCEMQRTVLKDGQVVNVIDTP 77 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtP 77 (230)
..++|+++|++|+|||||+|+|++..... .. ....++|.......+.+ .+..+.|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 45899999999999999999997221100 00 00123444444454554 67899999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
|+.++. .....++..+|++++|+|+.+.........+..+... ..|+++|+||+|+...+
T Consensus 91 G~~df~-----------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 91 GHADFT-----------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-----HTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-----TCCEEEEEECTTSCCSC
T ss_pred CchhHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCcccc
Confidence 998754 2233456678999999999888887777777655543 24899999999997543
No 133
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.60 E-value=2e-15 Score=129.59 Aligned_cols=134 Identities=20% Similarity=0.316 Sum_probs=79.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceee-eeEE---------------------------------
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQR--------------------------------- 62 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~-~~~~--------------------------------- 62 (230)
...++|+|+|.+|+|||||+|+|+|........+..+.|... .+..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 355899999999999999999999987531111111222111 0000
Q ss_pred ---EEeeCC---eEEEEEeCCCCCCCCCCcHHHHHH--HHHHHHhhcCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhc
Q 026970 63 ---TVLKDG---QVVNVIDTPGLFDFSAGSEFVGKE--IVKCIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFG 133 (230)
Q Consensus 63 ---~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~ 133 (230)
+.. .+ ..+.||||||+.+.... ..... +.......+..+|++++|+|+++ .....+..+++.+...
T Consensus 143 ~~~~~~-~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 143 FMCAQL-PNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-- 217 (550)
T ss_dssp EEEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred ceEEec-cccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence 000 00 36899999999752210 00000 22333334456799999999975 3566666666554432
Q ss_pred ccccceEEEEEeCCCCCCCChhhHHHH
Q 026970 134 KKIFDYMIVVFTGGDELEDNDETLEDY 160 (230)
Q Consensus 134 ~~~~~~~ivv~tk~D~~~~~~~~~~~~ 160 (230)
..++++|+||+|+.. ...+.+.
T Consensus 218 ---~~pvilVlNK~Dl~~--~~el~~~ 239 (550)
T 2qpt_A 218 ---EDKIRVVLNKADMVE--TQQLMRV 239 (550)
T ss_dssp ---GGGEEEEEECGGGSC--HHHHHHH
T ss_pred ---CCCEEEEEECCCccC--HHHHHHH
Confidence 247999999999986 4444443
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.60 E-value=6.9e-16 Score=130.20 Aligned_cols=119 Identities=22% Similarity=0.281 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCC-CCCCCcHHH-HHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFV-GKEIVKCI 97 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~-~~~~~~~~ 97 (230)
.+|+++|.+|||||||+|+|++...... ...+++|.+.....+.. ++..+.+|||||+. ++....+.. .....
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~v-s~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~--- 318 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIV-TDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTL--- 318 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCC-CCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHH---
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCcc-CCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHH---
Confidence 7899999999999999999998753222 22345566555555554 78899999999997 543222111 01111
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..+|++|+|+|+++..+..+..+++.+ . ..|+++|+||+|+..
T Consensus 319 -~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 319 -QEIEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVE 364 (482)
T ss_dssp -HHHHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCC
T ss_pred -HHhhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECccccc
Confidence 233456999999999877776665554332 2 348999999999875
No 135
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.60 E-value=1.1e-14 Score=110.60 Aligned_cols=117 Identities=14% Similarity=0.051 Sum_probs=73.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeee--eEEEEeeC-----------CeEEEEEeCCCCCCCCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLKD-----------GQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~~~liDtPG~~~~~~ 84 (230)
...+|+|+|.+|+|||||+|+|++...... ...|.... ...+.... ...+.||||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---- 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE---- 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH----
Confidence 447999999999999999999998754211 11122211 11222212 3579999999942
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (230)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~ 151 (230)
.+.......+..+|++++|+|+++..+. .....++....... ...|+++|+||+|+..
T Consensus 96 -------~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 96 -------RFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp -------HHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred -------hHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 2334445566788999999999743221 22223333322211 3458999999999865
No 136
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.60 E-value=2e-15 Score=111.42 Aligned_cols=117 Identities=19% Similarity=0.088 Sum_probs=69.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
....+|+++|.+|+|||||++++++...... ..+ |....+. .+.. .....+.+|||||......
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~---~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------- 71 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD---YVP-TVFDNFSANVVVNGATVNLGLWDTAGQEDYNR---------- 71 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTTT----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCC---CCC-eeeeeEEEEEEECCEEEEEEEEECCCChhhhh----------
Confidence 3458999999999999999999997653211 111 1111111 1111 1234567999999765432
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+.... .++..+..... ..|+++|+||+|+..
T Consensus 72 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 72 -LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRD 126 (182)
T ss_dssp -TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred -hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhc
Confidence 223556788999999999754333222 35555555432 358999999999865
No 137
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.60 E-value=1.4e-14 Score=107.74 Aligned_cols=118 Identities=25% Similarity=0.172 Sum_probs=71.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE-EEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
....+|+++|.+|||||||+|++++.... .. ...|....+. .... ++ ..+.+|||||...+..-
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-------- 85 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI-SE---YDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRNC-------- 85 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC-SC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCCT--------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC-cc---cCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchhH--------
Confidence 45589999999999999999999977532 11 1112222221 1222 33 46789999997654321
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ivv~tk~D~~~ 151 (230)
...+..+|++++|+|++++-+... ..++..+...... ....|+++|+||+|+..
T Consensus 86 ----~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 86 ----ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp ----HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred ----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 124467899999999985433222 3344545443211 12458999999999864
No 138
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.59 E-value=3.2e-15 Score=110.94 Aligned_cols=114 Identities=21% Similarity=0.146 Sum_probs=72.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHHHHHH
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE 92 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~ 92 (230)
+.....+|+++|.+|||||||+|++++....... ..|.......+.. ++ ..+.+|||||...+.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE----SPEGGRFKKEIVV-DGQSYLLLIRDEGGPPELQ--------- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC----CTTCEEEEEEEEE-TTEEEEEEEEECSSSCCHH---------
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCCcceEEEEEEE-CCEEEEEEEEECCCChhhh---------
Confidence 3455689999999999999999999877542211 1122211122232 44 356789999975421
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
.+..+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+.
T Consensus 82 -------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 82 -------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAIS 132 (184)
T ss_dssp -------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCB
T ss_pred -------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccc
Confidence 2335689999999985433333 34444444431 12345899999999984
No 139
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.6e-14 Score=116.76 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+|+|.+|+|||||+|+|++...... ..|....+..+.. .+..+.||||||...+. ...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKIR-----------PLW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----C-----------CSH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhHH-----------HHH
Confidence 346899999999999999999998764221 1244444444443 67899999999965433 222
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ivv~tk~D~~~ 151 (230)
..++..+|++++|+|++++-+... ...++....... ...|+++|+||+|+..
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHhccCCEEEEEEECCchHHHHH--HHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 345567899999999975544332 112222222211 2458999999999876
No 140
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.59 E-value=9.6e-15 Score=123.90 Aligned_cols=119 Identities=16% Similarity=0.238 Sum_probs=79.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccc-----------------------------cccCCCCccceeeeeEEEEeeCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVLKDG 68 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~ 68 (230)
...+|+++|++|+|||||+|+|++.... .......++|.......+.. .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 4589999999999999999999765210 00011235666666665554 67
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceEE
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI 141 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i 141 (230)
..+.||||||+.++ ...+...+..+|++++|+|+++. +.......+..+.. ++ .++++
T Consensus 111 ~~~~iiDTPG~~~f-----------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~---~~~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRDF-----------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHNLI 175 (483)
T ss_dssp CEEEEECCCCCGGG-----------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TT---CCCEE
T ss_pred ceEEEEECCCcHHH-----------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cC---CCcEE
Confidence 89999999998542 24444556788999999999854 33344444444333 23 23699
Q ss_pred EEEeCCCCCCC
Q 026970 142 VVFTGGDELED 152 (230)
Q Consensus 142 vv~tk~D~~~~ 152 (230)
+|+||+|+...
T Consensus 176 vviNK~Dl~~~ 186 (483)
T 3p26_A 176 IAMNKMDNVDW 186 (483)
T ss_dssp EEEECGGGGTT
T ss_pred EEEECcCcccc
Confidence 99999998753
No 141
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.59 E-value=6.9e-15 Score=109.21 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
.+|+++|.+|+|||||+|++++...... ..+++|...... .. . .+.++||||+.....-.......+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~t~~~~~~--~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRG--KRPGVTRKIIEI--EW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSS--SSTTCTTSCEEE--EE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccC--CCCCccceeEEE--ec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 5899999999999999999998864221 223444433322 22 2 688999999865443222222333332222
Q ss_pred h----cCCccEEEEEEeCCCCCCHHHHHHHHH--------HHHHhcccccceEEEEEeCCCCCCC
Q 026970 100 A----KDGIHAVLVVFSVRSRFSQEEEAALHS--------LQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 100 ~----~~~~~~il~v~d~~~~~~~~~~~~l~~--------l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
+ ...++++++|+|.. .+......+... +..... ....|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLR-ELDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHH-HTTCCEEEEEECGGGCSC
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHH-hcCCceEEEeehHhccCc
Confidence 2 34456777777765 221111122110 111111 123589999999998763
No 142
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.58 E-value=2.6e-16 Score=133.97 Aligned_cols=116 Identities=16% Similarity=0.252 Sum_probs=86.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 98 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~ 98 (230)
+++|+++|++|+|||||+++|++...... ..+++|.....+.+....+..+.||||||+.++.....
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~----------- 70 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA----------- 70 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB-----------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH-----------
Confidence 47899999999999999999998765322 34556666655555544567899999999876553322
Q ss_pred hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 99 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 99 ~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
..+..+|++++|+|+++.........+..+... ..|+++|+||+|+...
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-----~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA-----HVPIVLAINKCDKAEA 119 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT-----TCCEEECCBSGGGTTT
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEeccccccc
Confidence 456678999999999888887777666655542 2479999999998753
No 143
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=2.9e-14 Score=119.38 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=80.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------------------------CCCCccceeeeeEEEEe
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------------------------ASSSGVTSTCEMQRTVL 65 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~ 65 (230)
....+|+++|++++|||||+|+|++....... ....++|....+..+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 34589999999999999999999865310000 00124455544444443
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (230)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 145 (230)
.+..+.||||||+.++ ...+...+..+|++++|+|+++.........+..+.. .+ .+++++|+|
T Consensus 102 -~~~~~~iiDtpGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~---~~~iIvviN 165 (434)
T 1zun_B 102 -AKRKFIIADTPGHEQY-----------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LG---IKHIVVAIN 165 (434)
T ss_dssp -SSEEEEEEECCCSGGG-----------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TT---CCEEEEEEE
T ss_pred -CCceEEEEECCChHHH-----------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cC---CCeEEEEEE
Confidence 5678999999997542 1223345578899999999987777766666655544 23 236999999
Q ss_pred CCCCCC
Q 026970 146 GGDELE 151 (230)
Q Consensus 146 k~D~~~ 151 (230)
|+|+..
T Consensus 166 K~Dl~~ 171 (434)
T 1zun_B 166 KMDLNG 171 (434)
T ss_dssp CTTTTT
T ss_pred cCcCCc
Confidence 999875
No 144
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.58 E-value=2.2e-14 Score=121.44 Aligned_cols=117 Identities=19% Similarity=0.285 Sum_probs=80.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc----cc-ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA----FK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE 92 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~----~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~ 92 (230)
..++|+++|+.++|||||+|+|++... .. ......++|....+..+.+ ++..+.+|||||+. .
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~-----------~ 85 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------D 85 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------H
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH-----------H
Confidence 458999999999999999999998761 00 1122345666666555554 67899999999963 2
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+...+...+..+|++++|+|+++.........+..+.. .+ .|.++|+||+|+..
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FN----IPIIVVITKSDNAG 139 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCBCEEEECTTSSC
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cC----CCEEEEEECCCccc
Confidence 33445566778999999999987777777777665544 33 35799999999875
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.58 E-value=2.8e-14 Score=119.56 Aligned_cols=122 Identities=19% Similarity=0.230 Sum_probs=82.3
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCccceeeeeEEEE
Q 026970 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTV 64 (230)
Q Consensus 14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~ 64 (230)
.+.....+|+++|++++|||||+|+|++...... .....++|....+..+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 3445668999999999999999999965432100 01124567776666665
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhccccc
Q 026970 65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIF 137 (230)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~ 137 (230)
. .+..+.||||||+.+ +...+...+..+|++++|+|+++... ......+..+.. .+ .
T Consensus 92 ~-~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~---v 155 (439)
T 3j2k_7 92 T-EKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AG---V 155 (439)
T ss_pred c-CCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cC---C
Confidence 4 677999999999743 23344445567899999999986543 234444444433 23 2
Q ss_pred ceEEEEEeCCCCCC
Q 026970 138 DYMIVVFTGGDELE 151 (230)
Q Consensus 138 ~~~ivv~tk~D~~~ 151 (230)
+++++|+||+|+..
T Consensus 156 ~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 156 KHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEeecCCCcc
Confidence 34999999999864
No 146
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.57 E-value=3.4e-14 Score=116.05 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
+.|+++|++|+|||||+|+|++...... ...+.|.......+.+ ++..+.++||||+.... .....+.+...+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~l--p~~lve~f~~tl~- 253 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGI--PPQIVDAFFVTLS- 253 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSC--CGGGHHHHHHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEE-CCEEEEEEeCCCchhcC--CHHHHHHHHHHHH-
Confidence 4599999999999999999999864221 2334455444444554 66889999999985421 1222233433333
Q ss_pred hcCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.+..+|++++|+|+++.. .... ..+.+.+.. ++. ...|+++|+||+|+..
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~-~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGV-SGKPILVTLNKIDKIN 306 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTC-CSCCEEEEEECGGGCC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCc-CCCCEEEEEECCCCCC
Confidence 456789999999997443 1111 122333333 331 1348999999999976
No 147
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.57 E-value=5.5e-13 Score=108.78 Aligned_cols=131 Identities=16% Similarity=0.127 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCC----Cc----------------------ccee--------------
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SG----------------------VTST-------------- 57 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~----~~----------------------~t~~-------------- 57 (230)
..++|+++|.+|||||||+|+|+|....+..... ++ .|..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3479999999999999999999998753211100 11 0000
Q ss_pred ---------eeeEEEEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhcCCc-cEEEEEEeCCCCCCHHHHHHH
Q 026970 58 ---------CEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEEEAAL 125 (230)
Q Consensus 58 ---------~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~il~v~d~~~~~~~~~~~~l 125 (230)
.....+...+...+.||||||+...... .......+...+..++..+ +++++|++++..+...+. .
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~ 187 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--L 187 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--H
Confidence 0001111122467999999999753221 1222233334444444344 566667777644444332 2
Q ss_pred HHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 126 HSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 126 ~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
..+..... ...++++|+||+|+...
T Consensus 188 ~i~~~~~~--~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 188 KVAKEVDP--QGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHHCT--TCTTEEEEEECGGGSCT
T ss_pred HHHHHhCc--CCCceEEEeccccccCc
Confidence 23333221 23589999999999863
No 148
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.56 E-value=3.8e-14 Score=121.08 Aligned_cols=119 Identities=16% Similarity=0.186 Sum_probs=78.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccc--------------------cCCCCccceeeeeEEEEeeCCeEEEEEeCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTP 77 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtP 77 (230)
..++|+++|++|+|||||+++|++...... .....++|.......+.+ .+..+.|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence 458999999999999999999986421100 001223333333334443 67899999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
|+.++. .....++..+|++++|+|+.+.........+..+.. ...|+++++||+|+...+
T Consensus 91 G~~df~-----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-----~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFS-----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-----RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-----TTCCEEEEEECTTSCCSC
T ss_pred CChhHH-----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH-----cCCCEEEEEcCcCCcccc
Confidence 997654 223345567899999999987777665555544332 124799999999997644
No 149
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=4.9e-14 Score=115.18 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=66.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCC-----CccceeeeeEEEEe-eCC--eEEEEEeCCCCCCCCCCc---
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMQRTVL-KDG--QVVNVIDTPGLFDFSAGS--- 86 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~--~~~~liDtPG~~~~~~~~--- 86 (230)
..++|+++|++|+|||||+|+|++...+...... ...|.......... ..+ ..+.+|||||+.+.....
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 3478999999999999999999887654332110 11233222222211 123 268999999996643211
Q ss_pred ----HHHHHHHHHHHHhhc---------CCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 87 ----EFVGKEIVKCIGMAK---------DGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 87 ----~~~~~~~~~~~~~~~---------~~~~~il~v~d~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+...+..++.... .++|+++|+++. ...+...+..+++.+ . ...|+++|+||+|+..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~--~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----H--NKVNIVPVIAKADTLT 188 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----C--S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----c--cCCCEEEEEECCCCCC
Confidence 112222223332221 245788888876 456776666555443 2 2348999999999986
No 150
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.9e-14 Score=123.72 Aligned_cols=120 Identities=15% Similarity=0.230 Sum_probs=82.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccC-----------------------------CCCccceeeeeEEEEee
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA-----------------------------SSSGVTSTCEMQRTVLK 66 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~ 66 (230)
.....+|+++|++|+|||||+|+|++........ ...++|.......+..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~- 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence 3456899999999999999999999764211100 0135666666665554
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccce
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDY 139 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~ 139 (230)
.+..+.||||||+.+ +...+...+..+|++|+|+|+++. ........+..+.. ++ .++
T Consensus 243 ~~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lg---i~~ 307 (611)
T 3izq_1 243 HRANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHN 307 (611)
T ss_dssp SSCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TT---CCE
T ss_pred CCceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cC---CCe
Confidence 678999999999854 235555677889999999999742 22333333333332 23 246
Q ss_pred EEEEEeCCCCCC
Q 026970 140 MIVVFTGGDELE 151 (230)
Q Consensus 140 ~ivv~tk~D~~~ 151 (230)
+++|+||+|+..
T Consensus 308 iIVVvNKiDl~~ 319 (611)
T 3izq_1 308 LIIAMNKMDNVD 319 (611)
T ss_dssp EEEEEECTTTTT
T ss_pred EEEEEecccccc
Confidence 999999999875
No 151
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.55 E-value=2.7e-14 Score=125.74 Aligned_cols=120 Identities=24% Similarity=0.319 Sum_probs=80.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccc------------c----CCCCccceeeeeEEEEeeCCeEEEEEeCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS------------R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~------------~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (230)
...++|+++|++|+|||||+|+|++...... . ....++|.......+.+ .+..+.||||||+.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCc
Confidence 4558999999999999999999984211000 0 00234455444444554 67899999999998
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
++. ..... ++..+|++++|+|+.+..+..+...+..+... ..|+++|+||+|+...+
T Consensus 87 df~-------~~~~~----~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 87 DFT-------VEVER----SLRVLDGAVTVLDAQSGVEPQTETVWRQATTY-----GVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp SCC-------HHHHH----HHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTCC
T ss_pred chH-------HHHHH----HHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc-----CCCEEEEEECCCccccc
Confidence 754 11222 33446999999999878887777777665542 34899999999998643
No 152
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.55 E-value=2.8e-13 Score=112.62 Aligned_cols=121 Identities=17% Similarity=0.283 Sum_probs=79.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEee--------------C--------CeEEEE
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLK--------------D--------GQVVNV 73 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l 73 (230)
....+|+++|+.++|||||+++|+|..... ......++|....+...... . ...+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 345899999999999999999999764211 11123445655443322110 0 167999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
|||||+. .+...+......+|++++|+|+++.. .......+..+.. ++. .|+++|+||+|+...
T Consensus 86 iDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 86 VDSPGHE-----------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE 150 (408)
T ss_dssp EECSSHH-----------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT
T ss_pred EECCCHH-----------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH
Confidence 9999953 23344445566789999999998665 5555555554433 332 379999999998763
No 153
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=9.4e-14 Score=105.26 Aligned_cols=120 Identities=22% Similarity=0.153 Sum_probs=71.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV 94 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~ 94 (230)
...+|+++|.+|||||||+|++++... +.... .+++.......+.. ++. .+.++||+|... . ..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~--~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~-----~-----~~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC--EVLGEDTYERTLMV-DGESATIILLDMWENKG-----E-----NE 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEE-TTEEEEEEEECCTTTTH-----H-----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC--CccceeeEEEEEEE-CCeeeEEEEeecCCCcc-----h-----hh
Confidence 447999999999999999999997542 11111 11111111122222 443 567899998542 1 11
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....++..++++++|+|++++-+... ..+...+.+.. .....|+++|+||+|+..
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGG
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhc
Confidence 122355678899999999985433222 22333333321 112458999999999864
No 154
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.54 E-value=4e-14 Score=124.59 Aligned_cols=124 Identities=19% Similarity=0.241 Sum_probs=81.2
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCcccc---cc-------------CCCCccceeeeeEEEEeeCCeEEEEEeC
Q 026970 13 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK---SR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDT 76 (230)
Q Consensus 13 ~~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~---~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDt 76 (230)
..+....++|+++|++|+|||||+++|+...... .. ....++|.......+.+ .+..+.||||
T Consensus 6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDT 84 (691)
T 1dar_A 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDT 84 (691)
T ss_dssp CCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECC
T ss_pred cCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEEC
Confidence 3444556899999999999999999998321100 00 00234555555555554 6789999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
||+.++. ... ...+..+|++++|+|+.+.........+..+... ..|+++|+||+|+...+
T Consensus 85 PG~~df~-------~~~----~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 85 PGHVDFT-------IEV----ERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGAD 145 (691)
T ss_dssp CSSTTCH-------HHH----HHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTCC
T ss_pred cCccchH-------HHH----HHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCcccCC
Confidence 9987632 122 2333456999999999878887776666655542 34799999999998654
No 155
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.54 E-value=1.2e-13 Score=104.26 Aligned_cols=126 Identities=15% Similarity=0.211 Sum_probs=71.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcH--HHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIV 94 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~ 94 (230)
....+|+++|++|+|||||+|+|+|...........+.+...... .. .+ .+.++||||+........ .......
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~--~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLF--EV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEE--EE-ET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEE--Ee-cC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 445899999999999999999999876211111122333332222 22 22 678999999864321111 1112112
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+......++++++++|+....+..+.....++.. . ..|+++|.||+|.+.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~----~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-S----NIAVLVLLTKADKLA 151 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-T----TCCEEEEEECGGGSC
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-c----CCCeEEEEecccCCC
Confidence 222222356789999999986666555444444433 2 247889999999886
No 156
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.54 E-value=4.6e-15 Score=125.31 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=82.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
..++|+++|++++|||||+++|++..... ....++|.....+.+.+ ++..+.||||||+.++....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~--~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~----------- 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS--GEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMR----------- 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSB--TTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSB-----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcc--ccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHH-----------
Confidence 44799999999999999999998754321 12344555554444443 56789999999998765332
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
...+..+|++++|+|+++.........+..+... ..|+++++||+|+...
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~-----~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA-----QVPVVVAVNKIDKPEA 118 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT-----TCCEEEEEECSSSSTT
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc-----CceEEEEEEecccccc
Confidence 2445678999999999876665555555554432 2479999999998753
No 157
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.54 E-value=2.3e-14 Score=106.24 Aligned_cols=116 Identities=18% Similarity=0.161 Sum_probs=66.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe------eCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL------KDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
.+|+++|++|||||||+|.|++........ ...|....+..... .....+.+|||||...+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~--~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------- 69 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGM--QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEF----------- 69 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------CSEEEEEEEC---------CEEEEEEECSHHHH-----------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCC--cceeccEEeEEeeeccccCCCCceEEEEEecCCCHHH-----------
Confidence 689999999999999999999863111111 11122222221111 13457899999995321
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
......++.+++++++|+|++++.... ...++..+.... ...|+++|+||+|+..
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 70 YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSD 126 (184)
T ss_dssp HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCC
T ss_pred HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCccc
Confidence 111122334568999999997542211 134444444332 2358999999999865
No 158
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.54 E-value=8e-14 Score=118.77 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=78.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 97 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~ 97 (230)
...+|+++|.+|||||||+|+|++.... . ...|....+..+.. .+..+.+|||||...+. ...
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~----~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~~ 383 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV-T----TIPTVGFNVETVTY-KNVKFNVWDVGGQDKIR-----------PLW 383 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC-C----CCCCSSEEEEEEES-SSCEEEEEEECCCGGGS-----------GGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC-C----cCCccceeEEEEEe-CCEEEEEEECCCcHHHH-----------HHH
Confidence 4589999999999999999999987631 1 12255555555554 67899999999965433 223
Q ss_pred HhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEeCCCCCC
Q 026970 98 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELE 151 (230)
Q Consensus 98 ~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (230)
..++..+|++|+|+|++++-+... ...++...... ....|+++|+||+|+..
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDE--ARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred HHHhccCCEEEEEEECcchhHHHH--HHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 456788999999999985433222 22223332221 12458999999999875
No 159
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.54 E-value=1.6e-13 Score=114.14 Aligned_cols=120 Identities=17% Similarity=0.272 Sum_probs=80.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccc-ccCCCCccceeeeeEEEEeeC----------------------CeEEEE
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKD----------------------GQVVNV 73 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~----------------------~~~~~l 73 (230)
....+|+++|+.++|||||+++|+|..... ......++|....+....+.. ...+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 345899999999999999999999764211 111224456554443322210 167999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
|||||+. .+...+......+|++++|+|+++.. .......+..+.. ++. .++++|+||+|+..
T Consensus 88 iDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~---~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 88 IDAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQ---KNIIIAQNKIELVD 151 (410)
T ss_dssp EECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGSC
T ss_pred EECCChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEECccCCC
Confidence 9999953 23334444456779999999998665 5566666655544 342 47999999999876
No 160
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.53 E-value=7.9e-14 Score=115.73 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCccceeeeeEEEE----eeCCeEEEEEeCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTV----LKDGQVVNVIDTPGL 79 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~----~~~~~~~~liDtPG~ 79 (230)
.+..+|+++|++|+|||||+|+|++....... ......+......... ......+.++||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 34589999999999999999999985321100 0000000000000000 001268899999997
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.++ ...+...+..+|++++|+|+++.. .......+..+... +. .|+++|+||+|+..
T Consensus 86 ~~~-----------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 86 EVL-----------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVS 143 (403)
T ss_dssp GGG-----------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred HHH-----------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccc
Confidence 432 233444557789999999998765 55556666655543 42 37999999999986
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.53 E-value=2.1e-14 Score=119.30 Aligned_cols=118 Identities=15% Similarity=0.196 Sum_probs=81.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcc-------cc-c---c----CCCCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRA-------FK-S---R----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~-------~~-~---~----~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (230)
....+|+++|++|+|||||+++|++... +. . . ....++|.......+.. .+..+.||||||+.+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHAD 87 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHH
Confidence 4458999999999999999999987310 00 0 0 00234455444443433 567899999999864
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEeCCCCCC
Q 026970 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELE 151 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ivv~tk~D~~~ 151 (230)
+ ...+...+..+|++++|+|+++........++..+... + .| +++|+||+|+..
T Consensus 88 f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 Y-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFMNKVDMVD 142 (405)
T ss_dssp G-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGCC
T ss_pred H-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEEECccccC
Confidence 2 23333456688999999999877777777666655542 3 24 889999999874
No 162
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.53 E-value=3.6e-14 Score=125.00 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=75.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceee-----------ee--------------------------
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-----------EM-------------------------- 60 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~-----------~~-------------------------- 60 (230)
...+|+|+|.+|+|||||+|+|+|....+.... ++|... ..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~--p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVN--PCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCC--TTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCC--CCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 458999999999999999999999876443322 112100 00
Q ss_pred -----------------EEEEeeCC---eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHH
Q 026970 61 -----------------QRTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 120 (230)
Q Consensus 61 -----------------~~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~ 120 (230)
..+..+.. ..+.||||||+.+... .......+++.+|++|+|+|+++..+..
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~ 217 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLG 217 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchh
Confidence 00000000 3689999999864211 1123334456789999999998777776
Q ss_pred HHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 121 EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 121 ~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+...+. +.+. ....|+++|+||+|+..
T Consensus 218 e~~~l~---~~l~-~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 218 ERRYLE---NYIK-GRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp HHHHHH---HHTT-TSCCCEEEEEECGGGGG
T ss_pred HHHHHH---HHHH-hhCCCEEEEEECccccc
Confidence 654442 2221 11347999999999875
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.52 E-value=7.6e-14 Score=115.57 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=80.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcccc----------c----cCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFK----------S----RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~----------~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (230)
..+|+++|++++|||||+++|++..... . .....++|.......+.. .+..+.||||||+.+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~--- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD--- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH---
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH---
Confidence 4799999999999999999998742100 0 001234555544443432 567899999999642
Q ss_pred CcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 85 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+...+...+..+|++++|+|+++.........+..+.. .+. +++++++||+|+..
T Consensus 79 --------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~v---p~iivviNK~Dl~~ 133 (397)
T 1d2e_A 79 --------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IGV---EHVVVYVNKADAVQ 133 (397)
T ss_dssp --------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CCEEEEEECGGGCS
T ss_pred --------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCC---CeEEEEEECcccCC
Confidence 33445566788999999999987777776666655544 231 23789999999874
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.52 E-value=5.9e-14 Score=121.22 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=79.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee-----------------CCeEEEEEeCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFD 81 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~~ 81 (230)
.++|+++|++|+|||||+++|++..... ....++|.........+. ....+.||||||+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~--~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVAS--REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSC--C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCcc--ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 4799999999999999999999765421 112233333222222110 112589999999987
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+..... ..+..+|++++|+|+++.+...+...+..+... ..|+++++||+|+..
T Consensus 83 F~~~~~-----------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-----~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMY-----RTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGST
T ss_pred HHHHHH-----------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-----CCeEEEEeccccccc
Confidence 653322 345678999999999988888777777766542 248999999999864
No 165
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.52 E-value=1e-13 Score=110.73 Aligned_cols=120 Identities=14% Similarity=0.094 Sum_probs=75.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|.+||||||+++.+.+.... ......+.|....+..+ .....+.+|||||...+..+.- ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~-~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l--------~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP-LDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSY--------DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS-GGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSH--------HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC-CccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhh--------hhhhh
Confidence 5899999999999999988765321 11112233444433333 2346899999999887642110 11245
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+++++++++|+|+++++......+.+++..........|+++|+||+|+..
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 788999999999987743333333333333211122458999999999876
No 166
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.52 E-value=1.5e-13 Score=117.90 Aligned_cols=120 Identities=18% Similarity=0.269 Sum_probs=86.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccc--------------------cccCCCCccceeeeeEEEEeeCCeEEEEEeCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAF--------------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTP 77 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~--------------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtP 77 (230)
..++|+|+|+.++|||||..+|+..... .......++|.......+.+ ++..++|||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence 4589999999999999999998622110 01122456677766676776 88999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCCh
Q 026970 78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 154 (230)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (230)
|+.||. .++.+++ .-+|++++|+|+.+.........++...+. + .|.++++||+|....+.
T Consensus 109 GHvDF~-------~Ev~raL----~~~DgAvlVvda~~GV~~qT~~v~~~a~~~-~----lp~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 109 GHQDFS-------EDTYRVL----TAVDSALVVIDAAKGVEAQTRKLMDVCRMR-A----TPVMTFVNKMDREALHP 169 (548)
T ss_dssp CGGGCS-------HHHHHHH----HSCSEEEEEEETTTBSCHHHHHHHHHHHHT-T----CCEEEEEECTTSCCCCH
T ss_pred CcHHHH-------HHHHHHH----HhcCceEEEeecCCCcccccHHHHHHHHHh-C----CceEEEEecccchhcch
Confidence 999986 2333444 455999999999889999998888877764 2 47999999999986553
No 167
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.52 E-value=1.3e-13 Score=121.21 Aligned_cols=130 Identities=16% Similarity=0.180 Sum_probs=80.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCC---------------------------------------------
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS--------------------------------------------- 52 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~--------------------------------------------- 52 (230)
..++|+++|.+++|||||+|+|+|....+.+....
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 44799999999999999999999987643321110
Q ss_pred ----ccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCC--cHHHHHHHHHHHHhhc-CCccEEEEEEeCCCCCCHHHH-HH
Q 026970 53 ----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEE-AA 124 (230)
Q Consensus 53 ----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~d~~~~~~~~~~-~~ 124 (230)
+++.......+..++...++|+||||+...... .......+...+..+. ..+|++++|+|++..+...+. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 001111111222234457899999999873321 1222222333333222 577999999999866665554 44
Q ss_pred HHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 125 LHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 125 l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
++.+... ..|+++|+||+|++..
T Consensus 210 l~~L~~~-----g~pvIlVlNKiDlv~~ 232 (772)
T 3zvr_A 210 AKEVDPQ-----GQRTIGVITKLDLMDE 232 (772)
T ss_dssp HHHHCTT-----CSSEEEEEECTTSSCT
T ss_pred HHHHHhc-----CCCEEEEEeCcccCCc
Confidence 4444332 3589999999999864
No 168
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.26 E-value=1.3e-15 Score=114.84 Aligned_cols=118 Identities=17% Similarity=0.056 Sum_probs=73.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe-eCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
....+|+++|.+|+|||||++++++....... .+++.......+.. .....+.+|||||..... .
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------R 93 (204)
Confidence 45689999999999999999999876542111 11111111111111 123456699999975432 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+... ..++..+..... ..|+++|+||+|+..
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 148 (204)
Confidence 22345567899999999875543333 245555544322 358999999999875
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.50 E-value=2.6e-14 Score=120.35 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=77.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc-cccc-------------c---------------CCCCccceeeeeEEEEeeCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR-AFKS-------------R---------------ASSSGVTSTCEMQRTVLKDG 68 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~-~~~~-------------~---------------~~~~~~t~~~~~~~~~~~~~ 68 (230)
...+|+++|++++|||||+|+|++.. .+.. + ....++|....+..+.. .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 34899999999999999999998641 0000 0 00135566655555543 66
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhcccccceEE
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ-------EEEAALHSLQTLFGKKIFDYMI 141 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~i 141 (230)
..+.||||||+.+ +...+...+..+|++++|+|+++.... .....+..+.. .+ .++++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~---v~~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LG---VRQLI 149 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TT---CCEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cC---CCeEE
Confidence 7899999999753 224445667889999999999744221 23333332222 22 23599
Q ss_pred EEEeCCCCCC
Q 026970 142 VVFTGGDELE 151 (230)
Q Consensus 142 vv~tk~D~~~ 151 (230)
+|+||+|+..
T Consensus 150 vviNK~Dl~~ 159 (458)
T 1f60_A 150 VAVNKMDSVK 159 (458)
T ss_dssp EEEECGGGGT
T ss_pred EEEEcccccc
Confidence 9999999873
No 170
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.50 E-value=4.4e-14 Score=118.34 Aligned_cols=118 Identities=24% Similarity=0.330 Sum_probs=73.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc-ccc----------------------------cCCCCccceeeeeEEEEeeCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA-FKS----------------------------RASSSGVTSTCEMQRTVLKDG 68 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~-~~~----------------------------~~~~~~~t~~~~~~~~~~~~~ 68 (230)
..++|+++|+.|+|||||+++|++... +.. .....++|....+..+.. .+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence 458999999999999999999986411 000 001234566555554544 56
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceEE
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI 141 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i 141 (230)
..+.||||||+.++ ...+...+..+|++++|+|+++. ........+..+.. ++ .++++
T Consensus 84 ~~~~iiDtpG~~~f-----------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~---~~~ii 148 (435)
T 1jny_A 84 YFFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MG---LDQLI 148 (435)
T ss_dssp CEEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TT---CTTCE
T ss_pred eEEEEEECCCcHHH-----------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeEE
Confidence 78999999998652 23344567889999999999854 22233333333322 23 23689
Q ss_pred EEEeCCCCCC
Q 026970 142 VVFTGGDELE 151 (230)
Q Consensus 142 vv~tk~D~~~ 151 (230)
+++||+|+..
T Consensus 149 vviNK~Dl~~ 158 (435)
T 1jny_A 149 VAVNKMDLTE 158 (435)
T ss_dssp EEEECGGGSS
T ss_pred EEEEcccCCC
Confidence 9999999875
No 171
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.50 E-value=3.7e-13 Score=118.65 Aligned_cols=120 Identities=19% Similarity=0.274 Sum_probs=80.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc---C-------------CCCccceeeeeEEEEeeCC-------eEEEE
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDG-------QVVNV 73 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~-------~~~~l 73 (230)
...++|+++|+.|+|||||+++|+........ . ...++|.......+.+ .+ ..+.|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence 44589999999999999999999753210000 0 0234455544444444 33 78999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 74 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
|||||+.++. ......+..+|++|+|+|+++.........+..+... ..|+++|+||+|+...+
T Consensus 87 iDTPG~~df~-----------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 87 IDTPGHVDFT-----------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-----KVPRIAFVNKMDRMGAN 150 (704)
T ss_pred EeCCCccchH-----------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEeCCCccccc
Confidence 9999987642 2222344567999999999877776666655544332 24799999999987644
No 172
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.49 E-value=3.2e-13 Score=101.23 Aligned_cols=117 Identities=21% Similarity=0.203 Sum_probs=71.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|++|||||||++.|++...... ..+..+.......+.. ++. .+.++||||........
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~---------- 71 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT---------- 71 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC----------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhh----------
Confidence 47999999999999999999998754211 1122222222233333 443 56789999965432211
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+..++++++|+|+.+..+... ..++..+.... ....++++|+||+|+..
T Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 72 -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp -HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG
T ss_pred -HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccc
Confidence 123456789999999874433222 23343343321 12358999999999864
No 173
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.49 E-value=1.2e-13 Score=119.10 Aligned_cols=120 Identities=22% Similarity=0.264 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------------CCCCccceeeeeEEEEee--C--CeEEEEEeCCCCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------------ASSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLF 80 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~~ 80 (230)
..++|+++|+.++|||||+++|++....... ....++|.......+.+. + ...+.||||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3579999999999999999999753210000 012344544433333332 2 2578899999987
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
++. ..+. ..+..+|++++|+|+++.........+...... ..|+++|+||+|+...+
T Consensus 85 dF~-------~ev~----r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 85 DFS-------YEVS----RALAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVIIPVINKIDLPSAD 141 (600)
T ss_dssp GGH-------HHHH----HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEEEEEEECTTSTTCC
T ss_pred hHH-------HHHH----HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCEEEEEeccCccccC
Confidence 642 2222 334567999999999878877665555444332 24799999999987643
No 174
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.48 E-value=1.5e-13 Score=112.55 Aligned_cols=102 Identities=14% Similarity=0.206 Sum_probs=73.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 100 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~ 100 (230)
+|+++|++++|||||+++|+ ..++|....+..+.+ .+..+.+|||||+.++. ..+...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f~-----------~~~~~~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKTL-----------KSLITA 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTCH-----------HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHHH-----------HHHHHH
Confidence 89999999999999999998 223455555554544 56789999999987532 222233
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe-CCCC
Q 026970 101 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDE 149 (230)
Q Consensus 101 ~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t-k~D~ 149 (230)
+..+|++++|+| +..........+..+.. .+. +.+++++| |+|+
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i---~~~ivvvNNK~Dl 125 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDL-LGF---KHGIIALTRSDST 125 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTC---CEEEEEECCGGGS
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCC---CeEEEEEEeccCC
Confidence 467899999999 76776666666665554 332 23488888 9998
No 175
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.48 E-value=1.9e-13 Score=110.27 Aligned_cols=116 Identities=19% Similarity=0.086 Sum_probs=75.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...+|+++|.+|+|||||++.+++...... ..+++.......+. .++. .+.+|||||...+. .
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~-----------~ 218 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYD-----------R 218 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCS---CCCCSEEEEEEEEE-ETTEEEEEEEEEECCCGGGT-----------T
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcc---cCCcccceeEEEEE-ECCEEEEEEEEeCCCchhhh-----------H
Confidence 448999999999999999999987654211 11222222222222 2444 45599999976533 2
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.....+..+|++++|+|++++.+.... .++..+..... ..|+++|+||+|+..
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 273 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHT
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccc
Confidence 223566789999999999854433332 34555555432 458999999999865
No 176
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.48 E-value=3.8e-13 Score=111.07 Aligned_cols=91 Identities=15% Similarity=0.054 Sum_probs=46.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEe--------------------eC---CeEEEEEeC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------KD---GQVVNVIDT 76 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~liDt 76 (230)
.+|+++|.+|||||||+|+|++.... . ...+++|.......... .+ ...+.||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~-~-~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVE-I-ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc-c-cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 37999999999999999999998621 1 12233344333321110 01 247899999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC
Q 026970 77 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR 116 (230)
Q Consensus 77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~ 116 (230)
||+....... +.+...+...++.+|++++|+|+++.
T Consensus 79 pG~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhh----hhHHHHHHHHHhcCCEEEEEEecccc
Confidence 9986532111 11222222456789999999999753
No 177
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.48 E-value=1.2e-13 Score=119.24 Aligned_cols=119 Identities=21% Similarity=0.214 Sum_probs=70.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccc-------------cCCCCccceeeeeEEEEee--C--CeEEEEEeCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKS-------------RASSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD 81 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~-------------~~~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~~~ 81 (230)
.++|+++|+.++|||||+++|+....... .....++|.......+.+. + +..+.||||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 47999999999999999999976321000 0012345555444444442 1 35789999999876
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 82 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
+. ..+.. .+..+|++++|+|++++........+...... ..|+++|+||+|+...+
T Consensus 84 F~-------~ev~~----~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~a~ 139 (599)
T 3cb4_D 84 FS-------YEVSR----SLAACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPAAD 139 (599)
T ss_dssp GH-------HHHHH----HHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTTCC
T ss_pred HH-------HHHHH----HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEeeeccCccccc
Confidence 42 22223 33456999999999878776665555444332 24799999999997643
No 178
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=1.7e-12 Score=107.54 Aligned_cols=129 Identities=20% Similarity=0.221 Sum_probs=69.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCC----CccceeeeeEEEEee-C--CeEEEEEeCCCCCCCCCCc---
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGS--- 86 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~~-~--~~~~~liDtPG~~~~~~~~--- 86 (230)
+-.+.|+|+|++|+|||||+|+|+|...+..+... ...|.......+... . ...++++||||+.......
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 44478999999999999999999998653222110 011222111111111 1 2368999999997642111
Q ss_pred HHHHHHHHHHHHh-----------hc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 87 EFVGKEIVKCIGM-----------AK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 87 ~~~~~~~~~~~~~-----------~~--~~~~~il~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+...+...+.. .+ +.+|+++|+++++ ..++..+..+++.+.. ..++++|+||+|.+.
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 181 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCcc
Confidence 1111111111111 12 3456788888876 5788777666655532 348999999999986
No 179
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.46 E-value=2.5e-13 Score=101.36 Aligned_cols=119 Identities=21% Similarity=0.146 Sum_probs=68.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
..+|+++|.+|||||||+|.+++... +... ..+++.......+.. ++. .+.++||+|...... .
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~----------~ 72 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSD--XEVLGEDTYERTLMV-DGESATIILLDMWENKGENE----------W 72 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC------GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----C----------T
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCcc--ccccceeEEEEEEEE-CCeEEEEEEEEeccCcchhh----------h
Confidence 47999999999999999999986432 1111 111111111122222 444 567899999653100 0
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....++..+|++++|+|++++-+... ..+...+.+... ....|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR 128 (192)
T ss_dssp TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGG
T ss_pred HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhc
Confidence 01123445689999999985433332 334444444321 12358999999999864
No 180
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.45 E-value=4.2e-13 Score=115.30 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=73.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeE----EEEe---eCCeEEEEEeCCCCCCCCCCcHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ----RTVL---KDGQVVNVIDTPGLFDFSAGSEFV 89 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~----~~~~---~~~~~~~liDtPG~~~~~~~~~~~ 89 (230)
....+|+++|.+|||||||+|+|++...........+.+...... .+.. ..+..+.++||||.........
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~-- 116 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ-- 116 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH--
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH--
Confidence 345899999999999999999999876421111111111111000 1111 1256899999999665443222
Q ss_pred HHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCC
Q 026970 90 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 152 (230)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (230)
..+..+|++++|+|+++ . .....++..+..... ..|+++|+||+|+...
T Consensus 117 ---------~~l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 117 ---------FFMTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPS 165 (535)
T ss_dssp ---------HHHHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTT
T ss_pred ---------HHccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC---CCCEEEEEECCCcccc
Confidence 22345799999999973 2 344667777776532 3589999999998753
No 181
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.45 E-value=1.4e-12 Score=97.20 Aligned_cols=117 Identities=22% Similarity=0.227 Sum_probs=71.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCe--EEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC 96 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~ 96 (230)
..+|+++|++|||||||++.|++...... ..+.++.......+.. ++. .+.++||||.........
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~--------- 96 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITS--------- 96 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCH---------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhH---------
Confidence 47999999999999999999998764221 2222233333333333 454 455799999865432221
Q ss_pred HHhhcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 97 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 97 ~~~~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
..+..++++++|+|..+..+... ..++..+.... ....++++|+||+|+..
T Consensus 97 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 97 --AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp --HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGG
T ss_pred --HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccc
Confidence 23456789999999874322211 22333333321 22458999999999864
No 182
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.45 E-value=1.6e-14 Score=125.00 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=60.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccc-----------------------------cCCCCccceeeeeEEEEeeC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKD 67 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~ 67 (230)
...++|+++|++++|||||+|+|++...... .....++|.......+.. .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 4557899999999999999999975321000 001235566665555554 5
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhcccccceE
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-----F--SQEEEAALHSLQTLFGKKIFDYM 140 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~~ 140 (230)
+..+.||||||+.++... +...+..+|++|+|+|++++ + .......+..+.. ++. +++
T Consensus 254 ~~~i~iiDTPGh~~f~~~-----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~i 318 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISG-----------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SEI 318 (592)
T ss_dssp -----CCEEESSSEEEEE-----------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CCE
T ss_pred CeEEEEEECCChHHHHHH-----------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeE
Confidence 678999999998764321 12344567999999999753 2 4445555544443 332 258
Q ss_pred EEEEeCCCCCC
Q 026970 141 IVVFTGGDELE 151 (230)
Q Consensus 141 ivv~tk~D~~~ 151 (230)
++|+||+|+..
T Consensus 319 IvviNKiDl~~ 329 (592)
T 3mca_A 319 VVSVNKLDLMS 329 (592)
T ss_dssp EEEEECGGGGT
T ss_pred EEEEecccccc
Confidence 99999999875
No 183
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.42 E-value=1.4e-12 Score=102.35 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeC--CeEEEEEeCCCCCCCCCCc---HH
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGS---EF 88 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~---~~ 88 (230)
++++|+|++|+|||||+|+|+|...+..+.. ............+.... ...++++|+||++...... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 6899999999999999999998765433210 00111111111111101 1368999999998643211 11
Q ss_pred HHHH----HHHHHHhh----------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 89 VGKE----IVKCIGMA----------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 89 ~~~~----~~~~~~~~----------~~~~~~il~v~d~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
+... +....... ...+++.++++|. +..++..+...++.+.+. .++++|++|+|.+.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt-- 154 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMT-- 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSC--
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCC--
Confidence 2111 12222111 1245888898886 468888887777766553 37999999999987
Q ss_pred hhhHHHH
Q 026970 154 DETLEDY 160 (230)
Q Consensus 154 ~~~~~~~ 160 (230)
...+..+
T Consensus 155 ~~e~~~~ 161 (270)
T 3sop_A 155 LEEKSEF 161 (270)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 184
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.42 E-value=2.2e-13 Score=114.92 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=66.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcc-cc------------------------cc----CCCCccceeeeeEEEEeeC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRA-FK------------------------SR----ASSSGVTSTCEMQRTVLKD 67 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~-~~------------------------~~----~~~~~~t~~~~~~~~~~~~ 67 (230)
....+|+++|+.++|||||+++|++... +. .. ....++|....+..+.. +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 4457999999999999999999974211 00 00 01235566655544554 6
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhcccccceE
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFDYM 140 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~ 140 (230)
+..+.||||||+.++. ..+...+..+|++++|+|+++... ......+..+.. .+ .+++
T Consensus 120 ~~~~~iiDtPGh~~f~-----------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~---vp~i 184 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYV-----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QG---INHL 184 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TT---CSSE
T ss_pred CeEEEEEECCCcHHHH-----------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cC---CCEE
Confidence 7899999999986532 333345678899999999985521 123333333322 23 1249
Q ss_pred EEEEeCCCCCC
Q 026970 141 IVVFTGGDELE 151 (230)
Q Consensus 141 ivv~tk~D~~~ 151 (230)
++++||+|+..
T Consensus 185 ivviNK~Dl~~ 195 (467)
T 1r5b_A 185 VVVINKMDEPS 195 (467)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECccCCC
Confidence 99999999864
No 185
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.42 E-value=1.8e-12 Score=117.62 Aligned_cols=119 Identities=18% Similarity=0.228 Sum_probs=78.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcc---------c---c--ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRA---------F---K--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~---------~---~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (230)
....+|+++|++++|||||+++|++... + + ......++|.......+.. .+..+.||||||+.+
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed- 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD- 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH-
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH-
Confidence 4558999999999999999999986411 0 0 0011234555443333332 567899999999642
Q ss_pred CCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 83 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+...+...+..+|++|+|+|+++.........+..+... +. +++++++||+|+..
T Consensus 372 ----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gI---P~IIVVINKiDLv~ 426 (1289)
T 3avx_A 372 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GV---PYIIVFLNKCDMVD 426 (1289)
T ss_dssp ----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TC---SCEEEEEECCTTCC
T ss_pred ----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CC---CeEEEEEeeccccc
Confidence 334455667889999999999877666666666655542 32 23789999999875
No 186
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.40 E-value=7.2e-13 Score=118.95 Aligned_cols=117 Identities=22% Similarity=0.267 Sum_probs=77.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcccccc--------------CCCCccceeeeeEEEEee---------------CC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------------DG 68 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------~~ 68 (230)
..++|+++|+.|+|||||+++|++....... ....++|.......+.+. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 4579999999999999999999865321110 012233443333333332 25
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCC
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 148 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D 148 (230)
..+.||||||+.++.. ....++..+|++++|+|+.++.+..+...+..+... ..|+++|+||+|
T Consensus 98 ~~i~liDTPG~~df~~-----------~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-----~~p~ilviNK~D 161 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSS-----------EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE-----RIKPVVVINKVD 161 (842)
T ss_dssp EEEEEECCCCCCSSCH-----------HHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCEEEEEEECHH
T ss_pred ceEEEEECcCchhhHH-----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCeEEEEECCC
Confidence 6899999999987641 222344567999999999888887776655444332 247899999999
Q ss_pred CC
Q 026970 149 EL 150 (230)
Q Consensus 149 ~~ 150 (230)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 86
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.39 E-value=3e-12 Score=112.31 Aligned_cols=117 Identities=30% Similarity=0.331 Sum_probs=80.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCC----------------CCccceeeeeEEEEeeCCeEEEEEeCCCCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS----------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 80 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~ 80 (230)
....+|+++|++|+|||||+++|++......... ..++|.......+.+ ....+.++||||+.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCcc
Confidence 3458999999999999999999984332100000 123444444444443 67889999999986
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 81 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
++. ..+.. .+..+|++++|+|+.+.+......++..+... + .|+++|+||+|+.
T Consensus 86 ~f~-------~~~~~----~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~----ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFV-------GEIRG----ALEAADAALVAVSAEAGVQVGTERAWTVAERL-G----LPRMVVVTKLDKG 139 (665)
T ss_dssp GGH-------HHHHH----HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCEEEEEECGGGC
T ss_pred chH-------HHHHH----HHhhcCcEEEEEcCCcccchhHHHHHHHHHHc-c----CCEEEEecCCchh
Confidence 532 22223 33456899999999888887777777666553 2 4799999999987
No 188
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.38 E-value=2.3e-12 Score=106.74 Aligned_cols=125 Identities=16% Similarity=0.136 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 99 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~ 99 (230)
..|+|+|++|||||||+|+|++...... .....|.......+.......++++||||+.+.......+...+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~--~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~---- 231 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR---- 231 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH----
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcccc--CcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH----
Confidence 4689999999999999999998854221 2233344444444444234789999999996532111111112222
Q ss_pred hcCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 100 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 100 ~~~~~~~il~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
....++.+++++|++ +-.... ....+.+..+...-...|.++|+||+|...
T Consensus 232 ~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 232 HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 235678999999996 211112 223333333211112458999999999875
No 189
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=3.3e-12 Score=105.58 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=70.0
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCC--CCccceeeeeEEEEeeCC--eEEEEEeCCCCCCCCCCcHH-
Q 026970 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS--SSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEF- 88 (230)
Q Consensus 14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~- 88 (230)
-..+..++++|+|++|+|||||+|.|+|......... ..+.+.. ....+....+ ..++++|+||++... ....
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~D~~~~g~~~-~~~~~ 114 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKLTIVSTVGFGDQI-NKEDS 114 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEEEEEEEECCCC-C-CHHHH
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCccccccchhhhhhhhhcc-ccchh
Confidence 3344445699999999999999999999854211111 1122222 1221111111 268999999997632 1111
Q ss_pred -------HHHHHHHHHHhh---------cC--CccE-EEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970 89 -------VGKEIVKCIGMA---------KD--GIHA-VLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (230)
Q Consensus 89 -------~~~~~~~~~~~~---------~~--~~~~-il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 149 (230)
+...+...+... .+ .+|+ +++++|....++..+..+++.|. ...++++|+||+|.
T Consensus 115 ~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~------~~~~vI~Vi~KtD~ 188 (427)
T 2qag_B 115 YKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD------SKVNIIPIIAKADA 188 (427)
T ss_dssp SHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC------SCSEEEEEESCGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh------hCCCEEEEEcchhc
Confidence 122222222221 11 1345 44556766678887766665553 13489999999999
Q ss_pred CC
Q 026970 150 LE 151 (230)
Q Consensus 150 ~~ 151 (230)
+.
T Consensus 189 Lt 190 (427)
T 2qag_B 189 IS 190 (427)
T ss_dssp SC
T ss_pred cc
Confidence 87
No 190
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.37 E-value=5.8e-12 Score=111.37 Aligned_cols=121 Identities=27% Similarity=0.345 Sum_probs=84.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccc----------------ccCCCCccceeeeeEEEEee------CCeEEEEE
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK----------------SRASSSGVTSTCEMQRTVLK------DGQVVNVI 74 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~------~~~~~~li 74 (230)
..-++|+|+|+.++|||||..+|+...... ......++|.......+.+. ++..++||
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 345899999999999999999986332110 01123466666655555542 24689999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
||||+.||. .++..++..+ |++++|+|+.+.....+...++...+. + .|.++++||+|....+
T Consensus 91 DTPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~-~----lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 91 DTPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY-G----VPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH-T----CCEEEEEECSSSTTCC
T ss_pred eCCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc-C----CCeEEEEccccccCcc
Confidence 999999875 3444555544 899999999889999998888877765 2 3799999999997544
No 191
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.35 E-value=5.9e-13 Score=116.29 Aligned_cols=117 Identities=19% Similarity=0.293 Sum_probs=86.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccccc---C-------------CCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSR---A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 83 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~ 83 (230)
++|+++|+.++|||||..+|+........ . ...++|.......+.+ ++..++||||||+.||.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSSTH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHHH
Confidence 68999999999999999998632211000 0 0125666666665665 77899999999999865
Q ss_pred CCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCCCC
Q 026970 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 153 (230)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (230)
.++. ....-+|++++|+|+.+.........++...+. + .|.++++||+|....+
T Consensus 82 -------~Ev~----raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-~----lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 82 -------AEVY----RSLSVLDGAILLISAKDGVQAQTRILFHALRKM-G----IPTIFFINKIDQNGID 135 (638)
T ss_dssp -------HHHH----HHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH-T----CSCEECCEECCSSSCC
T ss_pred -------HHHH----HHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-C----CCeEEEEeccccccCC
Confidence 2233 344566999999999889998888888877775 3 3688999999998654
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.29 E-value=4.3e-11 Score=95.39 Aligned_cols=129 Identities=20% Similarity=0.185 Sum_probs=62.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccc-cCCC----CccceeeeeEEEEee---CCeEEEEEeCCCCCCCCCC---
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-RASS----SGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAG--- 85 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~-~~~~----~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~--- 85 (230)
+-.++|+|+|++|+|||||+|+|+|...+.. +... ...+.......+... ....++++||||+......
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 3448999999999999999999998743222 1000 001111111111111 1347899999999543210
Q ss_pred cHHHHHHHH----HHHHhh---------cCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 86 SEFVGKEIV----KCIGMA---------KDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 86 ~~~~~~~~~----~~~~~~---------~~~~~~il~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+...+. ..+... ...+++++|+++++. .++..+.. .++.. .. ..++++|+||+|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~---~l~~l-~~--~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA---FMKAI-HN--KVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHH---HHHHH-TT--TSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHH---HHHHH-Hh--cCCEEEEEEeCCCCC
Confidence 011222111 122111 123466888888753 48776643 33333 21 237999999999875
No 193
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.2e-11 Score=96.46 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=31.3
Q ss_pred CccEEEEEEeCCCC--CCHHH-HHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 103 GIHAVLVVFSVRSR--FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 103 ~~~~il~v~d~~~~--~~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
++|++++|+|++++ .+... ..++..+..... ....|+++|+||+|+..
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGV 212 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccc
Confidence 58999999999865 44433 344555544321 12358999999999864
No 194
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.23 E-value=1.7e-11 Score=100.49 Aligned_cols=93 Identities=18% Similarity=0.136 Sum_probs=49.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC----------------CeEEEEEeCCCC
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGL 79 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~ 79 (230)
-....+|+++|.+|+|||||+|+|++... .....+++|.......+...+ ...+.++||||+
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 34557999999999999999999999864 112233445544444333211 235899999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (230)
.......+.+...+ ...++.+|++++|+|+.
T Consensus 97 ~~~as~~~glg~~~----l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 97 VKGAHNGQGLGNAF----LSHISACDGIFHLTRAF 127 (396)
T ss_dssp ----------CCHH----HHHHHTSSSEEEEEEC-
T ss_pred ccccchhhHHHHHH----HHHHHhcCeEEEEEecC
Confidence 86443222222222 23445779999999986
No 195
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.23 E-value=3.8e-13 Score=110.13 Aligned_cols=123 Identities=18% Similarity=0.191 Sum_probs=69.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcccc-----ccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFK-----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
..+|+++|.+|+|||||+|+|++..... .....+++|.......+ +..+.++||||+.+.....+.+..+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL----DEESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES----SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe----cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 3689999999999999999999864211 11223445554443322 22378999999987653233222222
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+. ....++.++|++++...+.......++.+. ....|+++++||.|.+.
T Consensus 236 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~-----~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 236 LKLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS-----GGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE-----SSSEEEEEEECTTSCEE
T ss_pred HHHhc-cccccCceEEEEcCCCEEEEcceEEEEEec-----CCCceEEEEecCccccc
Confidence 22221 124678899999874211111111111111 12348999999999986
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.22 E-value=8.3e-12 Score=101.33 Aligned_cols=90 Identities=17% Similarity=0.092 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC----------------CeEEEEEeCCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS 83 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~~~~ 83 (230)
.+|+++|.+|+|||||+|+|++...... ..+++|..+....+...+ +..+.++||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~--~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAA--NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 6899999999999999999998763111 223344444433333322 1479999999997532
Q ss_pred CCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC
Q 026970 84 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS 115 (230)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~ 115 (230)
.....+...+. ..++.+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl----~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFL----ANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHH----HHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHH----HHHHhcCeEEEEEecCC
Confidence 11111111122 23457799999999874
No 197
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.18 E-value=6.5e-13 Score=108.83 Aligned_cols=122 Identities=20% Similarity=0.171 Sum_probs=71.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC-----ccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 93 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~ 93 (230)
..+|+++|.+|+|||||+|+|++. ...... ..+++|........ +..+.++||||+.+.......+..+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~gtT~~~~~~~~----~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMIEIPL----ESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE-ECTTSSCEEEEEEC----STTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeec-CCCCeEEeeEEEEe----CCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 368999999999999999999986 221121 23445555443322 23478999999987543222222222
Q ss_pred HHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 94 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 94 ~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
...+. ....++.++|++++...+.......++.+. ....++++++||.|.+.
T Consensus 237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~-----~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK-----GGRRSFVCYMANELTVH 288 (369)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE-----SSSEEEEEEECTTSCEE
T ss_pred HHHHh-cccccCceEEEEcCCceEEECCEEEEEEcc-----CCCceEEEEecCCcccc
Confidence 22221 125678999999884221101111111111 12347999999999875
No 198
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.16 E-value=1e-10 Score=96.06 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=62.2
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeC----------------CeEEEEEeCC
Q 026970 14 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTP 77 (230)
Q Consensus 14 ~~~~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtP 77 (230)
..-....+|+|+|++|||||||+|+|+|....... ..+++|..+....+...+ +..+.++|||
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHCCCccccc-CCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecc
Confidence 33445689999999999999999999996541221 233445555444443322 1357999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC
Q 026970 78 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 114 (230)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~ 114 (230)
|+.......+.+...+.. .+..+|++++|+++.
T Consensus 94 Gl~~~~s~~e~L~~~fl~----~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 94 GLTKGASTGVGLGNAFLS----HVRAVDAIYQVVRAF 126 (392)
T ss_dssp GGCCCCCSSSSSCHHHHH----HHTTCSEEEEEEECC
T ss_pred ccccCCcHHHHHHHHHHH----HHHHHHHHHHHHhcc
Confidence 998654433333333333 335679999999975
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.15 E-value=4.5e-11 Score=97.22 Aligned_cols=25 Identities=28% Similarity=0.094 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
.....|+|+|++|||||||+|.|++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3458999999999999999999986
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.15 E-value=6.5e-11 Score=96.56 Aligned_cols=90 Identities=21% Similarity=0.175 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEee--------------------CCeEEEEEeCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------------DGQVVNVIDTPGL 79 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~liDtPG~ 79 (230)
.+|+++|.+|+|||||+|+|++.... . ...+.+|........... .+..+.++||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~-v-~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANAL-A-ANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTT-C-SSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCc-c-cCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 57999999999999999999986421 1 112233443333322211 2357999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC
Q 026970 80 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS 115 (230)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~ 115 (230)
.......+.+...+... ++.+|++++|+|+.+
T Consensus 80 ~~~a~~~~~lg~~fl~~----ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAH----IREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHH----HHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHH----HHhCCEEEEEEECCC
Confidence 86543333233333333 356799999999864
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.12 E-value=1.3e-10 Score=94.16 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
.....|+++|++|+|||||+|.|++
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4558999999999999999999964
No 202
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.12 E-value=3.1e-10 Score=97.54 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=62.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcc-ccccCCCCccceeeeeEEEE--eeCCeEEEEEeCCCCCCCCC-CcHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLFDFSA-GSEFVGKE 92 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtPG~~~~~~-~~~~~~~~ 92 (230)
.+..+|+|+|.+|+|||||+|+|+|... +..+....++|......... ...+..+.|+||||+.+... ........
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~ 115 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWI 115 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHH
Confidence 4457899999999999999999999864 22211122333333222111 12567899999999987543 22221121
Q ss_pred HHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 026970 93 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130 (230)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~ 130 (230)
+. +..... + ++|+++...++..+...+..+.+
T Consensus 116 fa--la~lls--s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 116 FA--LAVLLS--S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HH--HHHHHC--S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HH--HHHHhc--C--eEEEECCCCccHHHHHHHHHHHH
Confidence 11 111111 1 45566655788877666655444
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.10 E-value=3.8e-11 Score=97.96 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
...++|+++|.+|+|||||++.|+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4558999999999999999999863
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.09 E-value=2.2e-09 Score=90.79 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=70.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh------CCccccccCCC-Cccc--------e--eeeeEEEE---------------
Q 026970 17 NGERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASS-SGVT--------S--TCEMQRTV--------------- 64 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~------~~~~~~~~~~~-~~~t--------~--~~~~~~~~--------------- 64 (230)
..+.+|+++|.+||||||+++.|+ |..+....... .+.. . ...++...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345799999999999999999998 66542221111 0000 0 01111100
Q ss_pred -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEE
Q 026970 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIV 142 (230)
Q Consensus 65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~iv 142 (230)
...+..+.||||||.... ......++...... ..+|.+++|+|+....+ .....+.+.+. .+ ..+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~gv 245 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVASV 245 (504)
T ss_dssp HHHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCCE
T ss_pred HHHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceEE
Confidence 014568999999998752 22334444333322 26789999999975443 33333333332 24 489
Q ss_pred EEeCCCCCCC
Q 026970 143 VFTGGDELED 152 (230)
Q Consensus 143 v~tk~D~~~~ 152 (230)
|+||+|....
T Consensus 246 VlNK~D~~~~ 255 (504)
T 2j37_W 246 IVTKLDGHAK 255 (504)
T ss_dssp EEECTTSCCC
T ss_pred EEeCCccccc
Confidence 9999998753
No 205
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.09 E-value=2.6e-10 Score=90.00 Aligned_cols=67 Identities=21% Similarity=0.329 Sum_probs=42.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF 88 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~ 88 (230)
....+|+++|.+|+|||||+|+|+|.....++. .+++|...+... .+..+.++||||+..+......
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQWVK----VGKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEE----ETTTEEEEECCCCCCSCCCCHH
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEEEE----eCCCEEEEECcCcCCCCCCCHH
Confidence 345799999999999999999999987543332 334555554322 2457899999999987655443
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.98 E-value=9.7e-10 Score=88.88 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
.....++|+|++|+|||||+|.|+|
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999984
No 207
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.97 E-value=3.3e-09 Score=92.24 Aligned_cols=80 Identities=21% Similarity=0.172 Sum_probs=43.6
Q ss_pred eEEEEEeCCCCCCC--CCCcHHHHHHHHHHHHhhcCCc-cEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970 69 QVVNVIDTPGLFDF--SAGSEFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (230)
Q Consensus 69 ~~~~liDtPG~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 145 (230)
..+.++|.||+... ..-+......+...+..+.... ..++++++.+..+. ....++.+...-. ...++++|+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~l~la~~v~~--~g~rtI~VlT 222 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEALSMAQEVDP--EGDRTIGILT 222 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHHHHHHHHHCS--SCCSEEEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHHHHHHHHHhh--cCCceEEEec
Confidence 46899999998763 2222334456666665544333 45555666542222 2234444444321 1247999999
Q ss_pred CCCCCCC
Q 026970 146 GGDELED 152 (230)
Q Consensus 146 k~D~~~~ 152 (230)
|+|.+..
T Consensus 223 K~Dlv~~ 229 (608)
T 3szr_A 223 KPDLVDK 229 (608)
T ss_dssp CGGGSSS
T ss_pred chhhcCc
Confidence 9999853
No 208
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.96 E-value=2e-09 Score=83.89 Aligned_cols=128 Identities=16% Similarity=0.039 Sum_probs=67.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh-----CCccccccCCCCcc--------------ceeeeeE-EE-------------
Q 026970 17 NGERTVVLVGRTGNGKSATGNSIL-----GRRAFKSRASSSGV--------------TSTCEMQ-RT------------- 63 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~-----~~~~~~~~~~~~~~--------------t~~~~~~-~~------------- 63 (230)
.....+++.|..||||||+++.|+ |............. +...... ..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 345788899999999999999998 65543222111100 0000000 00
Q ss_pred ------------EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHH-HHHHHHH
Q 026970 64 ------------VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQT 130 (230)
Q Consensus 64 ------------~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~-~l~~l~~ 130 (230)
....+..+.||||||..+.. ....+...+...+.. +++++++|+....+..+.. .......
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~-----~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~ 165 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETF-----LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL 165 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH-----HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchh-----hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH
Confidence 00012478999999975311 111111112223345 7899999986444544422 1111111
Q ss_pred HhcccccceEEEEEeCCCCCC
Q 026970 131 LFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 131 ~~~~~~~~~~ivv~tk~D~~~ 151 (230)
.. .....|+++|+||+|...
T Consensus 166 ~~-~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 166 ID-LRLGATTIPALNKVDLLS 185 (262)
T ss_dssp HH-HHHTSCEEEEECCGGGCC
T ss_pred Hh-cccCCCeEEEEecccccc
Confidence 11 112347999999999875
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.88 E-value=1.6e-08 Score=83.56 Aligned_cols=117 Identities=19% Similarity=0.146 Sum_probs=66.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCC-C--CccceeeeeEEEEeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-S--SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 95 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~ 95 (230)
...++|+|++|+|||||+|.|+|...+..+.. . ..++.. .+ .........++++|+||+...... ..++..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~-v~q~~~~~~ltv~D~~g~~~~~~~----~~~~L~ 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RH-PYKHPNIPNVVFWDLPGIGSTNFP----PDTYLE 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CE-EEECSSCTTEEEEECCCGGGSSCC----HHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EE-eccccccCCeeehHhhcccchHHH----HHHHHH
Confidence 35899999999999999999999654322211 1 111111 11 111112236899999998643211 122222
Q ss_pred HHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCC
Q 026970 96 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 150 (230)
Q Consensus 96 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (230)
.+. ....+.+++ ++.. +.......+...+... + .|+++|.|+.|.+
T Consensus 143 ~~~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-~----~p~~lV~tkpdll 188 (413)
T 1tq4_A 143 KMK--FYEYDFFII-ISAT-RFKKNDIDIAKAISMM-K----KEFYFVRTKVDSD 188 (413)
T ss_dssp HTT--GGGCSEEEE-EESS-CCCHHHHHHHHHHHHT-T----CEEEEEECCHHHH
T ss_pred HcC--CCccCCeEE-eCCC-CccHHHHHHHHHHHhc-C----CCeEEEEecCccc
Confidence 221 222345554 7776 4565666666666552 2 4899999998865
No 210
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.85 E-value=6e-08 Score=80.61 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=69.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCccccccCCC--Ccc---------ceeeeeEEEE----------------
Q 026970 18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASS--SGV---------TSTCEMQRTV---------------- 64 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~------~~~~~~~~~~~--~~~---------t~~~~~~~~~---------------- 64 (230)
.+..|+++|++|+||||++..|+ |..+....... .+. .....++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999987 33321111000 000 0000001000
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970 65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (230)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~ 144 (230)
...+..+.||||||.... ......++....... .+|.+++|+|+... .........+.+.+ ....+|+
T Consensus 179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~--~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVI--HPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEEE
T ss_pred HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhh--cCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEEE
Confidence 013467999999997642 334445554443322 46899999999732 23333334444332 3578999
Q ss_pred eCCCCCC
Q 026970 145 TGGDELE 151 (230)
Q Consensus 145 tk~D~~~ 151 (230)
||+|...
T Consensus 247 TKlD~~~ 253 (443)
T 3dm5_A 247 TKLDGSA 253 (443)
T ss_dssp ECCSSCS
T ss_pred ECCCCcc
Confidence 9999875
No 211
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.81 E-value=4.1e-09 Score=82.22 Aligned_cols=60 Identities=30% Similarity=0.412 Sum_probs=39.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccccCCCCccceeeeeEEEEeeCCeEEEEEeCCCCCCCCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 84 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~ 84 (230)
.+++++|.+|+|||||+|+|++......+. ..++|...+... .+..+.++||||+.++..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQWFS----LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEE----CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceEEEE----eCCCEEEEECCCcccCcC
Confidence 589999999999999999999887543322 334455443221 245788999999998665
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.75 E-value=2e-08 Score=83.43 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=70.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCccccccCCC---------------CccceeeeeE----------EEEe-
Q 026970 18 GERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASS---------------SGVTSTCEMQ----------RTVL- 65 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~------~~~~~~~~~~~---------------~~~t~~~~~~----------~~~~- 65 (230)
.+..|+++|++|+||||++..|+ |..+....... .+........ .+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45789999999999999999987 33221110000 0000000000 0000
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970 66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (230)
Q Consensus 66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~ 144 (230)
..+..+.++||||..... .......++....... .++.+++|+|+... .......+.+.+.+ .+..+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~-----~~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQAS-----PIGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHC-----SSEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhccc-----CCcEEEE
Confidence 125678999999975411 1233445555544333 45899999998632 22334444454433 3688999
Q ss_pred eCCCCCC
Q 026970 145 TGGDELE 151 (230)
Q Consensus 145 tk~D~~~ 151 (230)
||.|...
T Consensus 246 TKlD~~a 252 (433)
T 3kl4_A 246 TKMDGTA 252 (433)
T ss_dssp ECGGGCS
T ss_pred ecccccc
Confidence 9999764
No 213
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.74 E-value=7.6e-09 Score=78.40 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
..++|+++|.+|+|||||++.|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999865
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.67 E-value=2.5e-08 Score=83.07 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=66.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc------cccccCCCC----------------------c-cceee-ee--EEEEe
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR------AFKSRASSS----------------------G-VTSTC-EM--QRTVL 65 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~------~~~~~~~~~----------------------~-~t~~~-~~--~~~~~ 65 (230)
.+..|+++|++|+||||+++.|.+.. +........ + .+... .. ..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 34689999999999999999987632 110000000 0 01110 00 00000
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc-ceEEEEE
Q 026970 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF-DYMIVVF 144 (230)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ivv~ 144 (230)
..+..+.|+||||.... .......+... .....+|.+++|+|+.... . ....... +... . +...+|+
T Consensus 178 ~~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvVl 245 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSIIV 245 (432)
T ss_dssp TSSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEEE
T ss_pred hhCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEEE
Confidence 14567899999998642 22233333221 1223679999999986332 2 2222222 2221 2 3488999
Q ss_pred eCCCCCC
Q 026970 145 TGGDELE 151 (230)
Q Consensus 145 tk~D~~~ 151 (230)
||+|...
T Consensus 246 nK~D~~~ 252 (432)
T 2v3c_C 246 TKLDGSA 252 (432)
T ss_dssp ECSSSCS
T ss_pred eCCCCcc
Confidence 9999864
No 215
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.63 E-value=4.5e-07 Score=72.10 Aligned_cols=127 Identities=16% Similarity=0.107 Sum_probs=67.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCccccc------cCCC--Cc-c--------ceeeeeEEEE----------------
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKS------RASS--SG-V--------TSTCEMQRTV---------------- 64 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~------~~~~--~~-~--------t~~~~~~~~~---------------- 64 (230)
.+..|+++|++||||||+++.|.+...... +... .+ . .....+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 457999999999999999999975432111 0000 00 0 0000010000
Q ss_pred eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHh-hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 026970 65 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 143 (230)
Q Consensus 65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv 143 (230)
...+..+.++||+|..................+.. ....++.+++++|+..+. .....+..+.+..+ ..+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----CcEEE
Confidence 00233567999999864321111112222333322 234578888899986442 23334444444333 57899
Q ss_pred EeCCCCCC
Q 026970 144 FTGGDELE 151 (230)
Q Consensus 144 ~tk~D~~~ 151 (230)
+||.|...
T Consensus 254 vTh~d~~a 261 (304)
T 1rj9_A 254 VTKLDGTA 261 (304)
T ss_dssp EECTTSSC
T ss_pred EECCcccc
Confidence 99998764
No 216
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.61 E-value=6.2e-07 Score=71.85 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=49.9
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC-------CCCC-HHHHHHHHHHHHHhccc--c
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SRFS-QEEEAALHSLQTLFGKK--I 136 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-------~~~~-~~~~~~l~~l~~~~~~~--~ 136 (230)
++..+.+|||+|.. .++.....++.+++++|+|+|++ +.-+ .....++.++...+... .
T Consensus 165 ~~v~l~iwDtgGQe-----------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 165 QSVIFRMVDVGGQR-----------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp TTEEEEEEEECCSH-----------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eceeeEEEEcCCch-----------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 66789999999953 33445567889999999999764 1111 22234555555554422 2
Q ss_pred cceEEEEEeCCCCCC
Q 026970 137 FDYMIVVFTGGDELE 151 (230)
Q Consensus 137 ~~~~ivv~tk~D~~~ 151 (230)
..|+++++||+|+..
T Consensus 234 ~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 234 NSSVILFLNKKDLLE 248 (327)
T ss_dssp TCEEEEEEECHHHHH
T ss_pred CceEEEEEECchhhh
Confidence 358999999999764
No 217
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.61 E-value=8.8e-07 Score=71.26 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=49.8
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCC-------C-CCHHHHHHHHHHHHHhccc--c
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-------R-FSQEEEAALHSLQTLFGKK--I 136 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~-------~-~~~~~~~~l~~l~~~~~~~--~ 136 (230)
++..+.+|||+|. +.++.....++.+++++|+|+|+++ . -.........++...+... .
T Consensus 159 ~~v~l~iwDtaGQ-----------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~ 227 (340)
T 4fid_A 159 KDIPFHLIDVGGQ-----------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK 227 (340)
T ss_dssp SSCEEEEEECCSC-----------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred eeeeeccccCCCc-----------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence 5678999999995 3445666788999999999999861 0 1112233444444443322 2
Q ss_pred cceEEEEEeCCCCCC
Q 026970 137 FDYMIVVFTGGDELE 151 (230)
Q Consensus 137 ~~~~ivv~tk~D~~~ 151 (230)
..|+++++||+|+..
T Consensus 228 ~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 228 GAVKLIFLNKMDLFE 242 (340)
T ss_dssp TSEEEEEEECHHHHH
T ss_pred CCeEEEEEECchhhh
Confidence 358999999999864
No 218
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.61 E-value=2.3e-07 Score=77.92 Aligned_cols=135 Identities=13% Similarity=0.147 Sum_probs=72.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc------CCCCcc-------c----eeeeeEEEE---------------
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-------T----STCEMQRTV--------------- 64 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~------~~~~~~-------t----~~~~~~~~~--------------- 64 (230)
..+..|+|+|++|+|||||++.|.|......+ ...... . ....+....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 34579999999999999999999764321110 000000 0 000011000
Q ss_pred -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH---HHHhh-cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 026970 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK---CIGMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139 (230)
Q Consensus 65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (230)
...+..+.++||+|.... ......++.+ .+... ...++-+++|+|++.. ......++.+.+.++ .
T Consensus 371 a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----i 440 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----L 440 (503)
T ss_dssp HHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----C
T ss_pred HHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----C
Confidence 013456889999998642 2223333332 22222 1236789999998633 333344444544433 4
Q ss_pred EEEEEeCCCCCCCChhhHHHHhc
Q 026970 140 MIVVFTGGDELEDNDETLEDYLG 162 (230)
Q Consensus 140 ~ivv~tk~D~~~~~~~~~~~~l~ 162 (230)
..+|+||.|.... ...+..++.
T Consensus 441 tgvIlTKLD~tak-gG~~lsi~~ 462 (503)
T 2yhs_A 441 TGITLTKLDGTAK-GGVIFSVAD 462 (503)
T ss_dssp SEEEEECGGGCSC-CTHHHHHHH
T ss_pred CEEEEEcCCCccc-ccHHHHHHH
Confidence 6789999997532 344444443
No 219
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.60 E-value=1.9e-07 Score=77.79 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=56.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC-----------------ccccccCCCCccceeeeeEE----EEeeC--CeEEEEE
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR-----------------RAFKSRASSSGVTSTCEMQR----TVLKD--GQVVNVI 74 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~-----------------~~~~~~~~~~~~t~~~~~~~----~~~~~--~~~~~li 74 (230)
+...|.|+|++++|||||+|.|+|. ..|..+......|....... ..... ...+.++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 4468999999999999999999864 12222211222222221111 01112 2468999
Q ss_pred eCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 026970 75 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL 131 (230)
Q Consensus 75 DtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~ 131 (230)
||||+.+...+ ...-..+.. +.... .+++||- ....+...+...+..+.+.
T Consensus 146 DTeG~~~~~~~-~~~d~~ifa-l~~lL--Ss~~IyN--~~~~i~~~~l~~L~~~~e~ 196 (447)
T 3q5d_A 146 DTQGTFDSQST-LRDSATVFA-LSTMI--SSIQVYN--LSQNVQEDDLQHLQLFTEY 196 (447)
T ss_dssp EEECCCSSHHH-HHHHHHHHH-HHHHH--CSEEEEE--ESSSCCHHHHHHHHHHHHH
T ss_pred cCCcccccccc-hhhhHHHHH-HHHHH--hhHHHHh--hcccccHHHHHHHHHHHHH
Confidence 99999875321 111112221 11111 1334443 3336777777666665553
No 220
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.57 E-value=1.8e-07 Score=75.22 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=66.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc------CCC--Ccc-------ceeee--eEEEE---------------
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASS--SGV-------TSTCE--MQRTV--------------- 64 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~------~~~--~~~-------t~~~~--~~~~~--------------- 64 (230)
.++..++++|++|+||||+++.|++......+ ... .+. ..... +....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 44679999999999999999999864321110 000 000 00000 00000
Q ss_pred -eeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 026970 65 -LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 143 (230)
Q Consensus 65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv 143 (230)
...+..+.++||+|....... ...++....... .+|..++++|+... ......++.+.+..+ ..+++
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~---l~~eL~~i~ral--~~de~llvLDa~t~--~~~~~~~~~~~~~~~-----it~ii 274 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRN---LMDEMKKIARVT--KPNLVIFVGDALAG--NAIVEQARQFNEAVK-----IDGII 274 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTC---HHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHSC-----CCEEE
T ss_pred HHhccchhhHHhhccchhHHHH---HHHHHHHHHHHh--cCCCCEEEEecHHH--HHHHHHHHHHHHhcC-----CCEEE
Confidence 012345778999998653322 233333322222 35788999998633 223333444443332 57899
Q ss_pred EeCCCCCC
Q 026970 144 FTGGDELE 151 (230)
Q Consensus 144 ~tk~D~~~ 151 (230)
+||.|...
T Consensus 275 lTKlD~~a 282 (328)
T 3e70_C 275 LTKLDADA 282 (328)
T ss_dssp EECGGGCS
T ss_pred EeCcCCcc
Confidence 99999754
No 221
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.50 E-value=9.3e-07 Score=71.72 Aligned_cols=73 Identities=11% Similarity=0.122 Sum_probs=49.5
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC--------CHHHHHHHHHHHHHhccc--c
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQTLFGKK--I 136 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~--------~~~~~~~l~~l~~~~~~~--~ 136 (230)
++..+.+|||+|..... .....++.+++++|+|+|+++.- .........++....... .
T Consensus 191 ~~~~l~iwDt~GQe~~r-----------~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 191 KDLHFKMFDVGGQRSER-----------KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp TTEEEEEEEECCSGGGG-----------GGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred CCeeEEEEeCCCchhhh-----------HHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 56789999999965432 33446889999999999997421 112234445555544321 2
Q ss_pred cceEEEEEeCCCCC
Q 026970 137 FDYMIVVFTGGDEL 150 (230)
Q Consensus 137 ~~~~ivv~tk~D~~ 150 (230)
..|+++++||+|+.
T Consensus 260 ~~piiLv~NK~DL~ 273 (353)
T 1cip_A 260 DTSIILFLNKKDLF 273 (353)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCcEEEEEECcCch
Confidence 35899999999985
No 222
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.46 E-value=3.4e-06 Score=70.25 Aligned_cols=123 Identities=17% Similarity=0.128 Sum_probs=66.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh-------CCccccccCCCCcc-ce----------eeeeEE--------------E-
Q 026970 17 NGERTVVLVGRTGNGKSATGNSIL-------GRRAFKSRASSSGV-TS----------TCEMQR--------------T- 63 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~-------~~~~~~~~~~~~~~-t~----------~~~~~~--------------~- 63 (230)
..+..|+++|.+|+||||++..|+ |..+.......... .. ...+.. +
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345789999999999999998887 54432111111000 00 000000 0
Q ss_pred Eee-CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEE
Q 026970 64 VLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 142 (230)
Q Consensus 64 ~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~iv 142 (230)
... .+..+.||||||..... ......+.... ....++.+++|+|+.... ......+.+... .....+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~---~~l~~~L~~~~--~~~~p~~vllVvda~~g~--~~~~~~~~f~~~-----l~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVD---EAMMDEIKQVH--ASINPVETLFVVDAMTGQ--DAANTAKAFNEA-----LPLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTC---HHHHHHHHHHH--HHSCCSEEEEEEETTBCT--THHHHHHHHHHH-----SCCCCE
T ss_pred HHHhCCCCEEEEECCCccccc---HHHHHHHHHHH--HhhcCcceeEEeecchhH--HHHHHHHHHhcc-----CCCeEE
Confidence 001 35679999999976422 23333333332 123578899999987332 222222222221 122557
Q ss_pred EEeCCCCCC
Q 026970 143 VFTGGDELE 151 (230)
Q Consensus 143 v~tk~D~~~ 151 (230)
|+||.|...
T Consensus 246 VlnK~D~~~ 254 (433)
T 2xxa_A 246 VLTKVDGDA 254 (433)
T ss_dssp EEECTTSSS
T ss_pred EEecCCCCc
Confidence 999999764
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.45 E-value=1.3e-06 Score=69.24 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=65.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC------CccccccCCCC-ccce----------eeeeEE--------------EE-e-
Q 026970 19 ERTVVLVGRTGNGKSATGNSILG------RRAFKSRASSS-GVTS----------TCEMQR--------------TV-L- 65 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~------~~~~~~~~~~~-~~t~----------~~~~~~--------------~~-~- 65 (230)
+..|+++|++|+||||++..|.+ ........... +... ...+.. +. .
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999873 22211111100 0000 000000 00 0
Q ss_pred eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEe
Q 026970 66 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 145 (230)
Q Consensus 66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~t 145 (230)
..+..+.++||||..... ..+....++...... ..+|.+++|+++... .......+.+.+ . .....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~--~~~d~vllVvda~~g--~~~~~~~~~~~~----~-~~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEA--IKPDEVTLVIDASIG--QKAYDLASKFNQ----A-SKIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHH----T-CTTEEEEEE
T ss_pred hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHH--hcCCEEEEEeeCCch--HHHHHHHHHHHh----h-CCCCEEEEe
Confidence 145579999999986410 122233333322111 256899999998632 222222222222 1 223789999
Q ss_pred CCCCCC
Q 026970 146 GGDELE 151 (230)
Q Consensus 146 k~D~~~ 151 (230)
|.|...
T Consensus 248 k~D~~~ 253 (297)
T 1j8m_F 248 KMDGTA 253 (297)
T ss_dssp CGGGCT
T ss_pred CCCCCc
Confidence 999764
No 224
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.39 E-value=1.2e-07 Score=75.41 Aligned_cols=59 Identities=29% Similarity=0.363 Sum_probs=33.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCCC------CccceeeeeEEEEeeCCeEEEEEeCCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS------SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 82 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~ 82 (230)
...++|+|++|+|||||+|+|+|......+.-. ..+|...... .. . ...++||||+..+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~--~~-~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--HT-S--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--EE-T--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh--hc-C--CEEEecCCCcccc
Confidence 468999999999999999999987643332111 1233222221 11 1 3479999998753
No 225
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.36 E-value=3.1e-07 Score=73.08 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=68.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccc------cCCCCc-cc----------eeeeeEE--------------E--
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS------RASSSG-VT----------STCEMQR--------------T-- 63 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~------~~~~~~-~t----------~~~~~~~--------------~-- 63 (230)
..+..|+++|++|+||||++..|.+...... ...... .. ....+.. +
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 3457899999999999999998875321100 000000 00 0000000 0
Q ss_pred EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhh---c-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 026970 64 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA---K-DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 139 (230)
Q Consensus 64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (230)
....+..+.++||||.. ........++....... . ..++.+++|+++... .......+.+.+. ...
T Consensus 182 a~~~~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~-----~~i 251 (306)
T 1vma_A 182 ALARNKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEA-----VNV 251 (306)
T ss_dssp HHHTTCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHH-----SCC
T ss_pred HHhcCCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhc-----CCC
Confidence 01134568999999963 22333444443332221 2 347889999998611 1222222223222 224
Q ss_pred EEEEEeCCCCCCCChhhHHHHh
Q 026970 140 MIVVFTGGDELEDNDETLEDYL 161 (230)
Q Consensus 140 ~ivv~tk~D~~~~~~~~~~~~l 161 (230)
.-+|+||.|.... ...+.+..
T Consensus 252 ~gvVlTk~D~~~~-gG~~l~~~ 272 (306)
T 1vma_A 252 TGIILTKLDGTAK-GGITLAIA 272 (306)
T ss_dssp CEEEEECGGGCSC-TTHHHHHH
T ss_pred CEEEEeCCCCccc-hHHHHHHH
Confidence 6688999997643 33344433
No 226
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.32 E-value=4.4e-07 Score=68.82 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
..++|+++|.+|||||||++.|+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999865
No 227
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.31 E-value=7.3e-06 Score=65.06 Aligned_cols=125 Identities=17% Similarity=0.234 Sum_probs=66.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc------CCCCcc-------ce----eeeeEEE--E-------------
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-------TS----TCEMQRT--V------------- 64 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~------~~~~~~-------t~----~~~~~~~--~------------- 64 (230)
..+..++++|++|+||||+++.|+|......+ ...... .. ...+... .
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 34579999999999999999999764321111 000000 00 0011100 0
Q ss_pred --eeCCeEEEEEeCCCCCCCCCCcHHHHHHH---HHHHHh-hcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 026970 65 --LKDGQVVNVIDTPGLFDFSAGSEFVGKEI---VKCIGM-AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD 138 (230)
Q Consensus 65 --~~~~~~~~liDtPG~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~ 138 (230)
...+....++||.|..... .....++ ...+.. ....++-+++++|++..++... .+..+.+..+
T Consensus 178 ~~~~~~~d~~lldt~gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g----- 247 (302)
T 3b9q_A 178 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG----- 247 (302)
T ss_dssp HHHHTTCSEEEECCCCCSSCC---HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----
T ss_pred HHHHcCCcchHHhcCCCCcch---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcC-----
Confidence 0012346789999986532 2222222 222222 2345777888888764544332 2333333323
Q ss_pred eEEEEEeCCCCCC
Q 026970 139 YMIVVFTGGDELE 151 (230)
Q Consensus 139 ~~ivv~tk~D~~~ 151 (230)
..++++||.|...
T Consensus 248 ~t~iiiThlD~~~ 260 (302)
T 3b9q_A 248 ITGLILTKLDGSA 260 (302)
T ss_dssp CCEEEEECCSSCS
T ss_pred CCEEEEeCCCCCC
Confidence 5789999988764
No 228
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.31 E-value=1.7e-06 Score=71.72 Aligned_cols=122 Identities=18% Similarity=0.180 Sum_probs=64.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc------ccccCCCC-ccce----------eeeeEE--------------EEe-
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA------FKSRASSS-GVTS----------TCEMQR--------------TVL- 65 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~------~~~~~~~~-~~t~----------~~~~~~--------------~~~- 65 (230)
.+..|+++|++|+||||++..|.+... ........ +... ...+.. +..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 457889999999999999988864321 00000000 0000 000000 000
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970 66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (230)
Q Consensus 66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~ 144 (230)
..+..+.||||||.... ......++....... .+|.+++|+|+... .......+.+... .....+|+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~-----l~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEK-----VGVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHH-----TCCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhc-----CCceEEEE
Confidence 13457899999997643 233334443333222 46889999998632 2222222322222 22467899
Q ss_pred eCCCCCC
Q 026970 145 TGGDELE 151 (230)
Q Consensus 145 tk~D~~~ 151 (230)
||.|...
T Consensus 245 TKlD~~~ 251 (425)
T 2ffh_A 245 TKLDGDA 251 (425)
T ss_dssp ESGGGCS
T ss_pred eCcCCcc
Confidence 9998754
No 229
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.26 E-value=7.9e-06 Score=66.30 Aligned_cols=125 Identities=17% Similarity=0.241 Sum_probs=67.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccccc------CCCCcc-------ce----eeeeEEEEe--------------
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-------TS----TCEMQRTVL-------------- 65 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~~------~~~~~~-------t~----~~~~~~~~~-------------- 65 (230)
..+..|+++|++|+||||+++.|+|......+ ...... +. ...+.....
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 34579999999999999999999764321110 000000 00 011110000
Q ss_pred ---eCCeEEEEEeCCCCCCCCCCcHHHHHHH---HHHHH-hhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 026970 66 ---KDGQVVNVIDTPGLFDFSAGSEFVGKEI---VKCIG-MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFD 138 (230)
Q Consensus 66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~ 138 (230)
..+....++||.|..... .....++ ...+. .....++-+++|+|++..++... .+..+.+..+
T Consensus 235 ~~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~g----- 304 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG----- 304 (359)
T ss_dssp HHHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----
T ss_pred HHHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhcC-----
Confidence 012346789999986532 2222222 22222 22345777888888764444332 2333333323
Q ss_pred eEEEEEeCCCCCC
Q 026970 139 YMIVVFTGGDELE 151 (230)
Q Consensus 139 ~~ivv~tk~D~~~ 151 (230)
..++++||.|...
T Consensus 305 ~t~iiiThlD~~~ 317 (359)
T 2og2_A 305 ITGLILTKLDGSA 317 (359)
T ss_dssp CCEEEEESCTTCS
T ss_pred CeEEEEecCcccc
Confidence 5789999988764
No 230
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.24 E-value=1.7e-06 Score=68.62 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=67.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcccccc-------CCCCcccee-----------eeeEE----------EEeeCCe
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-------ASSSGVTST-----------CEMQR----------TVLKDGQ 69 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~~~-------~~~~~~t~~-----------~~~~~----------~~~~~~~ 69 (230)
.+..|+++|++|+||||++..|++......+ ......+.. ..... +....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 4579999999999999999998643211000 000000000 00000 0001345
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCC
Q 026970 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 149 (230)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~ 149 (230)
.+.|+||||.... ......++...+. ...++.+++|++++.. . ..+..+.+.+. .....-+|+||.|.
T Consensus 184 dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~---~~~~~~~~~~~--~l~~~giVltk~D~ 251 (296)
T 2px0_A 184 DHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--Y---EDMKHIVKRFS--SVPVNQYIFTKIDE 251 (296)
T ss_dssp SEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--H---HHHHHHTTTTS--SSCCCEEEEECTTT
T ss_pred CEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--H---HHHHHHHHHHh--cCCCCEEEEeCCCc
Confidence 7999999998642 2222333333221 1235778899987632 1 12222333333 12345678899997
Q ss_pred CCCChhhHHHHhc
Q 026970 150 LEDNDETLEDYLG 162 (230)
Q Consensus 150 ~~~~~~~~~~~l~ 162 (230)
... ...+...+.
T Consensus 252 ~~~-~g~~~~~~~ 263 (296)
T 2px0_A 252 TTS-LGSVFNILA 263 (296)
T ss_dssp CSC-CHHHHHHHH
T ss_pred ccc-hhHHHHHHH
Confidence 653 234444443
No 231
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.24 E-value=5.5e-06 Score=66.34 Aligned_cols=125 Identities=20% Similarity=0.216 Sum_probs=66.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcc------ccccCCCCcc-------ce-----eeeeEEE---------------
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRA------FKSRASSSGV-------TS-----TCEMQRT--------------- 63 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~------~~~~~~~~~~-------t~-----~~~~~~~--------------- 63 (230)
..+..|+++|++|+||||++..|.+.-. .......... .. ......+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 4457899999999999999988864321 1000000000 00 0001111
Q ss_pred ----EeeCCeEEEEEeCCCCCCCCCCcHHHHHHHHH---HHHhhc-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 026970 64 ----VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK---CIGMAK-DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK 135 (230)
Q Consensus 64 ----~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~ 135 (230)
....+..+.||||||.... ......++.. .+.... ..+|.+++|+++... ...+..+.. |...
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-----~~~l~~~~~-~~~~ 253 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-----QNGVIQAEE-FSKV 253 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-----HHHHHHHHH-HTTT
T ss_pred HHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-----HHHHHHHHH-Hhhc
Confidence 0013467999999997641 1222233322 222122 346899999998622 223333433 3322
Q ss_pred ccceEEEEEeCCCCCC
Q 026970 136 IFDYMIVVFTGGDELE 151 (230)
Q Consensus 136 ~~~~~ivv~tk~D~~~ 151 (230)
....-+|+||.|...
T Consensus 254 -~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 254 -ADVSGIILTKMDSTS 268 (320)
T ss_dssp -SCCCEEEEECGGGCS
T ss_pred -CCCcEEEEeCCCCCC
Confidence 234568999999754
No 232
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.19 E-value=3.6e-06 Score=66.90 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccC-CC---C--ccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA-SS---S--GVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~-~~---~--~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (230)
...++++|++|+|||||+|+|+ ...+..+. .. . .+|...... .. . ....++||||+..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~--~~-~-~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLI--PF-G-KGSFVGDTPGFSK 228 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEE--EE-T-TTEEEESSCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEE--Ec-C-CCcEEEECcCcCc
Confidence 4688999999999999999999 64433221 11 1 122222111 11 1 2347899999864
No 233
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.17 E-value=2.1e-05 Score=65.38 Aligned_cols=107 Identities=19% Similarity=0.194 Sum_probs=59.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh-------C----------CccccccCCCCccceeeeeEE----EEeeCC--eEEEE
Q 026970 17 NGERTVVLVGRTGNGKSATGNSIL-------G----------RRAFKSRASSSGVTSTCEMQR----TVLKDG--QVVNV 73 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~-------~----------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~l 73 (230)
.+...|.|+|..++|||+|+|.|+ | ...|..+....++|....... ....++ ..+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 345788899999999999999765 2 133433333344454443321 111233 46999
Q ss_pred EeCCCCCCCCCCcHHHHHHHHHH-HHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 026970 74 IDTPGLFDFSAGSEFVGKEIVKC-IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 130 (230)
Q Consensus 74 iDtPG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~ 130 (230)
+||.|+++...+.. .-..+... +-.+ ..+||=.. ..++..+.+.+..+.+
T Consensus 145 lDTEG~~d~~~~~~-~d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~te 195 (457)
T 4ido_A 145 MDTQGTFDSQSTLR-DSATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTE 195 (457)
T ss_dssp EEECCBTCTTCCHH-HHHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHH
T ss_pred EeccCCCCcccCcc-ccHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHH
Confidence 99999988665432 11222211 1111 24444333 3567777666665554
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.15 E-value=1.2e-06 Score=70.93 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
...++|+|++|+|||||+|.|+|...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 35899999999999999999999764
No 235
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.11 E-value=5.2e-06 Score=65.72 Aligned_cols=122 Identities=19% Similarity=0.175 Sum_probs=65.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcccc------ccCCCC-ccce----------eeeeEE--------------EEe-
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFK------SRASSS-GVTS----------TCEMQR--------------TVL- 65 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~------~~~~~~-~~t~----------~~~~~~--------------~~~- 65 (230)
.+..++++|++|+||||++..|++..... .+.... +... ...... +..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999998886532110 000000 0000 000000 000
Q ss_pred -eCCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 026970 66 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 144 (230)
Q Consensus 66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~ 144 (230)
..+..+.|+||||.... ......++....... .++.+++|+++... .......+.+... ....-+|+
T Consensus 177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~~~~~~~~~~~~~-----~~i~givl 244 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEK-----VGVTGLVL 244 (295)
T ss_dssp HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHH-----TCCCEEEE
T ss_pred HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--HHHHHHHHHHhhc-----CCCCEEEE
Confidence 13457999999987643 233444444443333 46788899998622 2222222222221 22466899
Q ss_pred eCCCCCC
Q 026970 145 TGGDELE 151 (230)
Q Consensus 145 tk~D~~~ 151 (230)
||.|...
T Consensus 245 nk~d~~~ 251 (295)
T 1ls1_A 245 TKLDGDA 251 (295)
T ss_dssp ECGGGCS
T ss_pred ECCCCCc
Confidence 9999764
No 236
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.10 E-value=3.2e-06 Score=67.13 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccccccCC------CCccceeeeeEEEEeeCCeEEEEEeCCCCCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 81 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~ 81 (230)
...++++|++|+|||||+|+|+|...+..+.- ...+|...... .. .....++|+||+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~--~~--~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL--KF--DFGGYVVDTPGFAN 233 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE--EC--TTSCEEESSCSSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE--Ec--CCCCEEEECcCCCc
Confidence 35889999999999999999999765433311 11122222111 11 12347899999864
No 237
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.83 E-value=2e-06 Score=63.81 Aligned_cols=26 Identities=38% Similarity=0.760 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
....|+|+|++|+|||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44789999999999999999998653
No 238
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.83 E-value=1.2e-05 Score=61.43 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|||||||++.|+|...
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 36899999999999999999998754
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.81 E-value=6.9e-06 Score=61.12 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+..++|+|++|+|||||++.|++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 367899999999999999999874
No 240
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.81 E-value=8.5e-06 Score=59.60 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCc
Q 026970 21 TVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~ 43 (230)
+++|+|++|+|||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 241
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.79 E-value=1.4e-05 Score=60.59 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
-.++|+|++|+|||||++.|+|...
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5889999999999999999999754
No 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.78 E-value=1.1e-05 Score=60.39 Aligned_cols=26 Identities=35% Similarity=0.357 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
....++|+|++|||||||++.|+|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998764
No 243
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.76 E-value=6.2e-05 Score=61.21 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=45.8
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC--------CHHHHHHHHHHHHHhccc--c
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQTLFGKK--I 136 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~--------~~~~~~~l~~l~~~~~~~--~ 136 (230)
++..+.+|||+|.... ......++.+++++|||+|+++.- .........++....... .
T Consensus 199 ~~~~l~i~Dt~Gq~~~-----------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRSE-----------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred CCeEEEEEeccchhhh-----------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 5788999999997432 234456788999999999998410 112233344444443321 2
Q ss_pred cceEEEEEeCCCCC
Q 026970 137 FDYMIVVFTGGDEL 150 (230)
Q Consensus 137 ~~~~ivv~tk~D~~ 150 (230)
..|+++++||+|+.
T Consensus 268 ~~piILv~NK~DL~ 281 (362)
T 1zcb_A 268 NVSIILFLNKTDLL 281 (362)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCCEEEEEEChhhh
Confidence 35899999999986
No 244
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.75 E-value=1.9e-05 Score=61.36 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999999754
No 245
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.75 E-value=2.4e-05 Score=60.17 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999999754
No 246
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.74 E-value=2e-05 Score=60.98 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999999754
No 247
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.74 E-value=1.4e-05 Score=58.43 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...++|+|++|||||||++.|++.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999875
No 248
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.74 E-value=2.1e-05 Score=61.18 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 36899999999999999999999754
No 249
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.74 E-value=2e-05 Score=60.39 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999999854
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.73 E-value=1.6e-05 Score=59.13 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+..++|+|++|||||||++.|++.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999875
No 251
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.73 E-value=2e-05 Score=60.50 Aligned_cols=25 Identities=40% Similarity=0.407 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
-.++|+|++|+|||||++.|+|...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999999754
No 252
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.73 E-value=8e-05 Score=55.25 Aligned_cols=81 Identities=7% Similarity=-0.004 Sum_probs=47.5
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCC
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 147 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~ 147 (230)
...+.|+|||+... . .....+ ..+|.+++++..+ ..+......++.+.+.-......++.+|+|+.
T Consensus 75 ~yD~viiD~~~~~~-----~----~~~~~l----~~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-----V----ITSAAV----MVSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSS-----H----HHHHHH----HHCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCC-----H----HHHHHH----HHCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 46789999998653 1 111222 2358899999887 44444456666665542112223568999999
Q ss_pred CCCCCChhhHHHHhc
Q 026970 148 DELEDNDETLEDYLG 162 (230)
Q Consensus 148 D~~~~~~~~~~~~l~ 162 (230)
+........+.++++
T Consensus 141 ~~~~~~~~~~~~~l~ 155 (206)
T 4dzz_A 141 IEMATMLNVLKESIK 155 (206)
T ss_dssp CTTEEEEHHHHHHHH
T ss_pred CCCchHHHHHHHHHH
Confidence 864322334555554
No 253
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.73 E-value=2.3e-05 Score=61.08 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 36899999999999999999999754
No 254
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.72 E-value=2.1e-05 Score=61.00 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999999754
No 255
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.72 E-value=1.9e-05 Score=59.49 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
-.++|+|++|+|||||++.|+|...
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999999754
No 256
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.71 E-value=2.2e-05 Score=61.45 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 36899999999999999999999754
No 257
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.71 E-value=1.2e-05 Score=59.06 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~ 43 (230)
..++|+|++|||||||++.|++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998754
No 258
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.71 E-value=1.6e-05 Score=60.11 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
+....++|+|++|||||||++.|+|..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 345789999999999999999998864
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.71 E-value=1.9e-05 Score=56.60 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
.-.++|+|++|+|||||++.|+|..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999999865
No 260
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.71 E-value=2.6e-05 Score=57.30 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
++..|+|+|++|+||||+++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999986
No 261
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.70 E-value=2.5e-05 Score=59.52 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35899999999999999999999753
No 262
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.70 E-value=2.5e-05 Score=59.95 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999999754
No 263
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.69 E-value=2.5e-05 Score=60.19 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999999754
No 264
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.69 E-value=1.5e-05 Score=60.20 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
+..++|+|++|+|||||++.|+|..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998753
No 265
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.67 E-value=2.8e-05 Score=61.01 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAF 45 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~ 45 (230)
.-.++|+|++|+|||||++.|+|...+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 73 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPA 73 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 358999999999999999999997543
No 266
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.67 E-value=2.9e-05 Score=60.49 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 36899999999999999999999754
No 267
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.67 E-value=2.9e-05 Score=60.63 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999999754
No 268
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.66 E-value=2.9e-05 Score=60.48 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.-.++|+|++|+|||||++.|+|.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999997
No 269
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.65 E-value=3.1e-05 Score=59.87 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
-.++|+|++|+|||||++.|+|...
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5899999999999999999999754
No 270
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.65 E-value=2.9e-05 Score=59.83 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35889999999999999999999754
No 271
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.65 E-value=3e-05 Score=60.17 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
.-.++|+|++|+|||||++.|+|..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3689999999999999999999874
No 272
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.64 E-value=2.3e-05 Score=58.70 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
.....|+|+|++|+|||||++.|.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455799999999999999999998764
No 273
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.64 E-value=2.6e-05 Score=59.93 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 6 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+.++..+.-+ .+..|+|+|++|||||||++.|.+.
T Consensus 14 ~l~~isl~i~--~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 14 GTENLYFQSM--RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ---------C--CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eecceeccCC--CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4444445443 3478999999999999999999764
No 274
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.64 E-value=3.1e-05 Score=59.76 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.-.++|+|++|+|||||++.|+|.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999996
No 275
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.61 E-value=3.8e-05 Score=55.62 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
......|+|+|++|+||||+++.|.+
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34457899999999999999999864
No 276
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.60 E-value=8.6e-05 Score=61.07 Aligned_cols=74 Identities=16% Similarity=0.159 Sum_probs=49.3
Q ss_pred CCeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHHhcc--cc
Q 026970 67 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR--------FSQEEEAALHSLQTLFGK--KI 136 (230)
Q Consensus 67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------~~~~~~~~l~~l~~~~~~--~~ 136 (230)
++..+.+|||+|..... .....++.+++++|+|+|+++- ..........++...... ..
T Consensus 215 ~~v~l~iwDtaGQe~~r-----------~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 215 DKVNFHMFDVGGQRDER-----------RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp TTEEEEEEEECCSGGGG-----------GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred CCccceecccchhhhhh-----------hhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 56889999999975432 3345788999999999999840 011223344444444332 12
Q ss_pred cceEEEEEeCCCCCC
Q 026970 137 FDYMIVVFTGGDELE 151 (230)
Q Consensus 137 ~~~~ivv~tk~D~~~ 151 (230)
..|+++|+||+|+..
T Consensus 284 ~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 284 TISVILFLNKQDLLA 298 (402)
T ss_dssp SCCEEEEEECHHHHH
T ss_pred CCeEEEEEEChhhhh
Confidence 458999999999753
No 277
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.60 E-value=4.2e-05 Score=55.41 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~ 41 (230)
+-.++++|++|+|||||++.+.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997653
No 278
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.58 E-value=3.3e-05 Score=57.76 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
++..|+|+|++|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999999875
No 279
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.58 E-value=4.5e-05 Score=60.15 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.+-.++|+|++|+|||||++.|+|...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 346899999999999999999999754
No 280
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.57 E-value=4.4e-05 Score=59.34 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
.-.++|+|++|+|||||++.|+|..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999999985
No 281
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.55 E-value=4.5e-05 Score=57.08 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
.+..|+|+|++||||||+++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998764
No 282
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.55 E-value=5.5e-05 Score=61.38 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|.|...
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 36899999999999999999999754
No 283
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.55 E-value=2.5e-05 Score=58.59 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFK 46 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~ 46 (230)
-.++|+|++|+|||||++.|+|. .+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~ 48 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQ 48 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCc
Confidence 57899999999999999999987 533
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.53 E-value=4.6e-05 Score=59.19 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
.+...++|+|++|+|||||++.|+|..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 344689999999999999999998753
No 285
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.52 E-value=6e-05 Score=61.06 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAF 45 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~ 45 (230)
-.++|+|++|+|||||++.|+|...+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCC
Confidence 58899999999999999999997643
No 286
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.52 E-value=2.7e-05 Score=59.19 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=16.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh-CCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSIL-GRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~-~~~ 43 (230)
+..++|+|++|||||||++.|+ +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999999 763
No 287
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.52 E-value=4.2e-05 Score=60.72 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++|+|++|+|||||++.|+|...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 346899999999999999999998754
No 288
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.48 E-value=5e-05 Score=60.19 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+...++|+|++|+|||||++.|+|.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3468999999999999999999864
No 289
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00094 Score=55.50 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+.-|+|.|+||+|||+|++++++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3478999999999999999999864
No 290
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.48 E-value=7.7e-05 Score=60.51 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 35889999999999999999999754
No 291
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.47 E-value=7.9e-05 Score=60.81 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
-.++|+|++|+|||||++.|+|...
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 5889999999999999999999864
No 292
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.47 E-value=8e-05 Score=60.49 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 35889999999999999999999754
No 293
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.46 E-value=6.2e-05 Score=59.98 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
..+..|+|+|++|||||||++.|.|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456899999999999999999998764
No 294
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.46 E-value=7.8e-05 Score=60.36 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35889999999999999999999854
No 295
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.46 E-value=6.6e-05 Score=55.76 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
+..|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998764
No 296
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.44 E-value=9.1e-05 Score=60.38 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 36889999999999999999999764
No 297
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.44 E-value=6.5e-05 Score=55.77 Aligned_cols=26 Identities=27% Similarity=0.555 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
..+..|+|+|++|+||||+++.|.+.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999754
No 298
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.43 E-value=8.7e-05 Score=56.96 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh---CCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSIL---GRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~---~~~~ 44 (230)
+..|+|+|++||||||+++.|. |...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4689999999999999999999 7654
No 299
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.43 E-value=5.2e-05 Score=55.91 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~ 43 (230)
.+++++|++|+|||||++.|+|..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998764
No 300
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0011 Score=55.00 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.++-|+|.|+||+|||+|++++++.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999854
No 301
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.41 E-value=9.8e-05 Score=60.24 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
-.++|+|++|+|||||++.|+|...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 5889999999999999999999854
No 302
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.41 E-value=7.2e-05 Score=60.46 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
-.++|+|++|+|||||++.|+|...
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 5899999999999999999999754
No 303
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.40 E-value=2.9e-05 Score=57.11 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~ 42 (230)
-|+|+||+|||||||++.|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999754
No 304
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0015 Score=53.57 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+.-|+|.|+||+|||+|++++++.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 467999999999999999999864
No 305
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.39 E-value=0.00011 Score=56.68 Aligned_cols=27 Identities=19% Similarity=0.291 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---CCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSIL---GRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~---~~~~ 44 (230)
....|+|+|++||||||+++.|. |...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 45789999999999999999998 7654
No 306
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.38 E-value=0.00021 Score=57.93 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=46.5
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCC-------CC-CCHHHHHHHHHHHHHhccc--cc
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SR-FSQEEEAALHSLQTLFGKK--IF 137 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~-------~~-~~~~~~~~l~~l~~~~~~~--~~ 137 (230)
...+.+|||+|..... .....++++++++|+|+|++ +. -......+..++....... ..
T Consensus 182 ~v~l~iwDtaGQe~~r-----------~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNER-----------RKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp --EEEEEEECCSTTGG-----------GGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred ceeeEEEECCCchhhh-----------HHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence 3578999999976433 33347889999999999986 11 1112233444444443321 24
Q ss_pred ceEEEEEeCCCCCC
Q 026970 138 DYMIVVFTGGDELE 151 (230)
Q Consensus 138 ~~~ivv~tk~D~~~ 151 (230)
.|+++|+||+|+..
T Consensus 251 ~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 251 TSFMLFLNKFDIFE 264 (354)
T ss_dssp CEEEEEEECHHHHH
T ss_pred CeEEEEEECcchhh
Confidence 58999999999753
No 307
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.37 E-value=7.7e-05 Score=54.75 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
..++|+|++|+||||+++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999975
No 308
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.35 E-value=6.7e-05 Score=60.78 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35889999999999999999999754
No 309
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0019 Score=53.41 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+.-|+|.|++|+|||+|++++++.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 3468999999999999999999865
No 310
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.33 E-value=8.7e-05 Score=53.53 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
..|+|+|++|+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 311
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.32 E-value=0.00013 Score=58.09 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
..+..|+|+|++|+|||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44579999999999999999999874
No 312
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.32 E-value=0.00017 Score=61.71 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRAFK 46 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~~~ 46 (230)
+.-.++|+|++|+|||||++.|+|...+.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~ 52 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIPN 52 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 34689999999999999999999975433
No 313
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.30 E-value=0.00013 Score=54.14 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+..|+|+|++|+||||+++.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999765
No 314
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.29 E-value=0.00015 Score=59.49 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCC
Confidence 36899999999999999999999753
No 315
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.29 E-value=0.00014 Score=54.06 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+..|+|+|++||||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999999753
No 316
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.28 E-value=0.00012 Score=59.53 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
....++|+|++|+|||||++.|++.-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34689999999999999999999874
No 317
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.28 E-value=0.0025 Score=48.88 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+..|+|.|++|+|||++++++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999753
No 318
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.28 E-value=0.00013 Score=59.14 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
.-.|+++|++|+|||||+++|+|.-
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3589999999999999999998753
No 319
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.27 E-value=0.00013 Score=55.02 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
..-.++|+|++|+|||||++.|++.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 320
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.27 E-value=0.00016 Score=57.68 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...+..|+|+|++|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345579999999999999999998654
No 321
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.26 E-value=0.0002 Score=61.41 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAF 45 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~ 45 (230)
.+.-.++|+|++|+|||||++.|+|...+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44568999999999999999999997543
No 322
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.25 E-value=0.00018 Score=55.04 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh
Q 026970 17 NGERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~ 40 (230)
...-.++|+|++|+|||||++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 344689999999999999999988
No 323
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.00022 Score=61.92 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCccccc
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFKS 47 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~~ 47 (230)
.+.-.++|+|++|+|||||++.|+|...+..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~ 131 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL 131 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 3457899999999999999999999765433
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.22 E-value=0.00033 Score=52.12 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.....|+|+|++|+||||+.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999875
No 325
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.22 E-value=0.00013 Score=58.58 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
...++++|++|+|||||++.|+|.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999999874
No 326
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.20 E-value=0.00029 Score=52.44 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=23.6
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 13 TSPSNGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 13 ~~~~~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
+++...+..|+|.|.+||||||+.+.|..
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 4 TDDKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp TCCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cchhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34444567899999999999999999864
No 327
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0016 Score=54.24 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+.-|+|.|++|+|||+|++++++.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4478999999999999999999864
No 328
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.20 E-value=0.00017 Score=58.88 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+...++|+|++|+|||||++.|++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4468999999999999999999875
No 329
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0011 Score=55.05 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+.-|+|.|+||+|||+|++++++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3478999999999999999999865
No 330
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.19 E-value=0.0002 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
..+..|+|.|++|+||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45579999999999999999999865
No 331
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.00024 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~ 41 (230)
+...|+|+|++|+||||+.+.|..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 332
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.18 E-value=0.00024 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
..|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 333
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.18 E-value=8.1e-05 Score=53.97 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~ 43 (230)
..++|+|++|+|||||++.|++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 334
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.18 E-value=0.00027 Score=61.39 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCcccc
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGRRAFK 46 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~~~~~ 46 (230)
.+.-.++|+|++|+|||||++.|+|...+.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~ 144 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPN 144 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCC
Confidence 445789999999999999999999976543
No 335
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.18 E-value=0.00014 Score=52.88 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
...++|+|++|+|||||++++++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 336
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.17 E-value=0.00017 Score=61.32 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
...++|+|+||||||||+++|++.-
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3569999999999999999999864
No 337
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.15 E-value=0.00021 Score=59.24 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
+.-.|+|+|++|+|||||+++|++.-
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999998753
No 338
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.15 E-value=0.0002 Score=53.95 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+|+|+|++|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998753
No 339
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.14 E-value=0.00018 Score=58.65 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
..+++|+|++|+|||||++.|+|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998864
No 340
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.14 E-value=0.00027 Score=52.43 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
..+..|+|+|++|+||||+++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999753
No 341
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00017 Score=60.54 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
...+++|+|++|+|||||++.|+|...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 347899999999999999999988653
No 342
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.09 E-value=0.00025 Score=61.55 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++-.++++|++|+|||||++.|+|...
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 346899999999999999999998754
No 343
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.09 E-value=0.00017 Score=50.98 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
....++|+|++|+|||||++.+.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998753
No 344
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.09 E-value=0.00023 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
.+|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 345
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.09 E-value=0.0023 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...++|.|++|+|||++++++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999753
No 346
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.08 E-value=0.00035 Score=60.52 Aligned_cols=27 Identities=41% Similarity=0.541 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++-.++++|++|+|||||++.|+|...
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 346899999999999999999998754
No 347
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.07 E-value=0.00037 Score=60.34 Aligned_cols=27 Identities=41% Similarity=0.522 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++-.++++|++|+|||||++.|+|...
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999998754
No 348
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.07 E-value=0.00035 Score=50.73 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
+.++++|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 68999999999999999999864
No 349
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.07 E-value=0.00038 Score=54.85 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 16 SNGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 16 ~~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...+..|+|+|++|+|||||++.|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345689999999999999999998754
No 350
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.06 E-value=0.00039 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999975
No 351
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.05 E-value=0.00047 Score=50.37 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...+|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3478999999999999999998643
No 352
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.05 E-value=0.00043 Score=59.29 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAF 45 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~ 45 (230)
.-.++|+|++|+|||||++.|+|...+
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 357899999999999999999997543
No 353
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.04 E-value=0.00036 Score=50.06 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 026970 20 RTVVLVGRTGNGKSATGNSI 39 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l 39 (230)
..|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 354
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.04 E-value=0.0023 Score=50.62 Aligned_cols=68 Identities=13% Similarity=-0.046 Sum_probs=37.6
Q ss_pred CeEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccce-EEEEEe
Q 026970 68 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDY-MIVVFT 145 (230)
Q Consensus 68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~-~ivv~t 145 (230)
...++|+|||+..... .+......+|.+++|+..+ ..+.. ...+++.+.+. +.....+ +-+|+|
T Consensus 156 ~yD~ViiD~p~~~~~~------------~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~-~~~~~~~~~gvV~N 221 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG------------GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAK-SKNYKVRLAGCVAN 221 (307)
T ss_dssp SCSEEEEEECCSSCCG------------GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTT-TTTCCCEEEEEEEE
T ss_pred cCCEEEEeCCCccchH------------HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHh-hhcCCCceEEEEEe
Confidence 4578999998765311 1112334678999998775 22222 23444545442 2222223 448999
Q ss_pred CCCC
Q 026970 146 GGDE 149 (230)
Q Consensus 146 k~D~ 149 (230)
+.+.
T Consensus 222 ~~~~ 225 (307)
T 3end_A 222 RSRA 225 (307)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 9884
No 355
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.02 E-value=0.00038 Score=49.90 Aligned_cols=22 Identities=18% Similarity=0.145 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
..|+|.|.+||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 356
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.01 E-value=0.00049 Score=59.77 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.-.++|+|++|+|||||++.|+|...
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999999754
No 357
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.00 E-value=0.0005 Score=50.72 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
..+..|+|+|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999754
No 358
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.00 E-value=0.00051 Score=58.86 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCccc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRAF 45 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~~ 45 (230)
.-.++|+|++|+|||||++.|+|...+
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999997543
No 359
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.99 E-value=0.00043 Score=51.27 Aligned_cols=24 Identities=33% Similarity=0.648 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...|+|+|.+||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998643
No 360
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.98 E-value=0.00044 Score=50.23 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~ 42 (230)
..+|+|++|+|||||+.+|.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998653
No 361
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.98 E-value=0.00034 Score=60.70 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++..++++|++|+|||||++.|+|...
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 346899999999999999999999754
No 362
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.98 E-value=0.00049 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999975
No 363
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.97 E-value=0.00036 Score=56.41 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
..-+++|+|++|+|||||++.|+|...
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999998743
No 364
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.96 E-value=0.013 Score=53.34 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=19.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHH
Q 026970 19 ERTVVLVGRTGNGKSATGNSI 39 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l 39 (230)
...++|+|++|+||||+++.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999998
No 365
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.95 E-value=0.00027 Score=56.42 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
.+.++|+|.+|||||||+|.|++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999763
No 366
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.95 E-value=0.00035 Score=58.80 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~ 43 (230)
-.++|+|++|+|||||++.|+|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 588999999999999999998754
No 367
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.94 E-value=0.00033 Score=60.55 Aligned_cols=27 Identities=37% Similarity=0.337 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++-.++++|++|+|||||++.|+|...
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 346899999999999999999998754
No 368
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.93 E-value=0.00083 Score=49.68 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 15 PSNGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 15 ~~~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
+......|+|.|.+||||||+.+.|..
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344557899999999999999998863
No 369
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.93 E-value=0.0032 Score=57.09 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
..+.++..+.... ...++|+|++|+|||||++.+.+
T Consensus 660 ~~V~ndvsl~~~~--g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 660 QYVPNNTDLSEDS--ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SSCCEEEEECTTS--CCEEEEESCCCHHHHHHHHHHHH
T ss_pred ceecccccccCCC--CeEEEEECCCCCchHHHHHHHHH
Confidence 3345555554333 36899999999999999999854
No 370
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.93 E-value=0.00056 Score=49.79 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 026970 19 ERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~ 40 (230)
+..|+|+|.+||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
No 371
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.93 E-value=0.00063 Score=49.76 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~ 41 (230)
+..|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
No 372
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.92 E-value=0.0065 Score=45.22 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=42.9
Q ss_pred CeEEEEEeCCCC-CCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEe
Q 026970 68 GQVVNVIDTPGL-FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFT 145 (230)
Q Consensus 68 ~~~~~liDtPG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ivv~t 145 (230)
...+.|+|||+. ... ..... ...+|.+++++.++ ..+.. ....++.+.+. . ..++.+|+|
T Consensus 67 ~yD~viiD~p~~~~~~---------~~~~~----l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~-~---~~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------DLEAL----ADGCDLLVIPSTPD-ALALDALMLTIETLQKL-G---NNRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS---------HHHHH----HHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT-C---SSSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH---------HHHHH----HHHCCEEEEEecCC-chhHHHHHHHHHHHHhc-c---CCCEEEEEE
Confidence 457899999986 431 11122 23458899988776 22222 13344444442 1 235789999
Q ss_pred CCCCCC-CChhhHHHHhc
Q 026970 146 GGDELE-DNDETLEDYLG 162 (230)
Q Consensus 146 k~D~~~-~~~~~~~~~l~ 162 (230)
+.+... .....+.++++
T Consensus 129 ~~~~~~~~~~~~~~~~l~ 146 (209)
T 3cwq_A 129 IIPPYPSKDGDEARQLLT 146 (209)
T ss_dssp SBCCTTSCHHHHHHHHHH
T ss_pred ecCCccchHHHHHHHHHH
Confidence 998653 22334555554
No 373
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.91 E-value=0.016 Score=46.21 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+...|+|.|++|+|||+|++++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3468999999999999999999854
No 374
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.91 E-value=0.00037 Score=54.42 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 026970 22 VVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 22 i~liG~~g~GKStlin~l~~~ 42 (230)
++|+|++|+|||||+++|++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 375
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.0007 Score=58.78 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCccccc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRRAFKS 47 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~~~~~ 47 (230)
-.++|+|++|+|||||++.|+|...+..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~ 406 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDE 406 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSB
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 3589999999999999999999865443
No 376
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.88 E-value=0.00064 Score=49.61 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999864
No 377
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.88 E-value=0.00092 Score=48.74 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
..+..|+|+|.+|+||||+++.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998754
No 378
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.88 E-value=0.00064 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~ 41 (230)
...|+++|++|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999863
No 379
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.86 E-value=0.0005 Score=59.55 Aligned_cols=27 Identities=33% Similarity=0.316 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+.-.++++|++|+|||||++.|+|...
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 346899999999999999999998754
No 380
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.86 E-value=0.0014 Score=52.44 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~ 43 (230)
+.|+|+|++|+|||||...|...-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998654
No 381
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.86 E-value=0.0033 Score=50.55 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~ 42 (230)
.++|.|++|+||||+++.|.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999998773
No 382
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.85 E-value=0.00074 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~ 41 (230)
.+..|+|.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999963
No 383
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.83 E-value=0.00091 Score=47.18 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~ 40 (230)
...+|+|++|+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 466899999999999999975
No 384
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.80 E-value=0.0008 Score=49.12 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
..|+|.|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
No 385
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.80 E-value=0.00064 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...++|+|++|+|||||++.|++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999843
No 386
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.79 E-value=0.00054 Score=52.66 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~ 42 (230)
-++|+|++|+|||||+++|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 387
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.79 E-value=0.001 Score=49.12 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
..+..|+|.|.+|+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999863
No 388
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.79 E-value=0.00088 Score=48.96 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 026970 19 ERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~ 40 (230)
+..|+|.|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999885
No 389
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.78 E-value=0.0008 Score=49.61 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026970 21 TVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~ 41 (230)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999875
No 390
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.78 E-value=0.00093 Score=48.95 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~ 41 (230)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998863
No 391
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.78 E-value=0.00092 Score=48.18 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+.++++|.+|+|||||++.|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999998753
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.77 E-value=0.001 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+..|+|+|.+|+||||+.+.|.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 393
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.76 E-value=0.001 Score=49.38 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~ 41 (230)
+..|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999964
No 394
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.75 E-value=0.00096 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~ 41 (230)
+..|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998853
No 395
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.75 E-value=0.00065 Score=56.64 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
..-+++|+|++|+|||||++.|+|..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44689999999999999999999864
No 396
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.75 E-value=0.0011 Score=50.69 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 026970 18 GERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~ 40 (230)
.+.+|+|+|++||||||+.+.|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999999986
No 397
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.75 E-value=0.0011 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 026970 19 ERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~ 40 (230)
...|+++|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4679999999999999999987
No 398
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.74 E-value=0.00074 Score=53.15 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
..-.++|+|++|+|||||++.|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34588999999999999999987653
No 399
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.74 E-value=0.0011 Score=48.98 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+..|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
No 400
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.74 E-value=0.00053 Score=62.37 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
+-+++|+|++|+|||||++.|+|...
T Consensus 699 GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 699 SSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp TCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999999754
No 401
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.73 E-value=0.0097 Score=53.19 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+.-|+|.|++|+|||+|++++++.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999999865
No 402
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.72 E-value=0.001 Score=54.14 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 026970 21 TVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~ 40 (230)
..+|+|++|+||||++++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999987
No 403
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.71 E-value=0.00095 Score=49.86 Aligned_cols=20 Identities=35% Similarity=0.710 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 026970 21 TVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~ 40 (230)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 404
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.70 E-value=0.0015 Score=49.13 Aligned_cols=26 Identities=15% Similarity=0.480 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...+.|+|+|+|||||+|....|...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34467888999999999999888643
No 405
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.70 E-value=0.0097 Score=46.03 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
....++|.|++|+|||+++.++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4478999999999999999999753
No 406
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.69 E-value=0.0012 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~ 41 (230)
.+..|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 407
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.69 E-value=0.00074 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 20 RTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~~ 43 (230)
..++|+|++|+|||||++.|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999998753
No 408
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.68 E-value=0.0016 Score=47.53 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999853
No 409
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.67 E-value=0.0011 Score=49.63 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026970 21 TVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~ 41 (230)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 410
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.66 E-value=0.001 Score=49.95 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~ 41 (230)
+..|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999853
No 411
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.66 E-value=0.00092 Score=54.57 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+..++++|++|+|||||++.|.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999863
No 412
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.66 E-value=0.0011 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 026970 19 ERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~ 40 (230)
...|+|+|.+||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999986
No 413
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.66 E-value=0.0014 Score=49.14 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~ 41 (230)
+..|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999964
No 414
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.65 E-value=0.00079 Score=52.53 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~ 42 (230)
-++|+|++|+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999864
No 415
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.65 E-value=0.00099 Score=48.07 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026970 21 TVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~ 41 (230)
+|+|+|++|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 416
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.64 E-value=0.016 Score=46.95 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
+.++|.|++|+||||+++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999754
No 417
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.64 E-value=0.00077 Score=60.33 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 4 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
..+.++..+. .....++|+|++|+|||||++.+.|..
T Consensus 595 ~~vlndisl~---~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 595 PFIANPLNLS---PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCCEEEEEC---SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeccccc---CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3345555555 344689999999999999999998753
No 418
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.64 E-value=0.0012 Score=50.84 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
..|+|+|++|+|||||.+.|..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999999864
No 419
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.62 E-value=0.0013 Score=48.34 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~ 41 (230)
+..|+|.|.+|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 420
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.62 E-value=0.00089 Score=51.55 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
..+..|+++|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 421
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.60 E-value=0.0097 Score=48.70 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...|+|.|++|+|||+|+.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999643
No 422
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.59 E-value=0.0032 Score=49.77 Aligned_cols=65 Identities=12% Similarity=-0.022 Sum_probs=42.4
Q ss_pred eEEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCC-CHHH-HHHHHHHHHHhcccccceEEEEEeC
Q 026970 69 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEE-EAALHSLQTLFGKKIFDYMIVVFTG 146 (230)
Q Consensus 69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ivv~tk 146 (230)
..+.+||| ...+. .....++.++|++++|+|++++. +... ..++..+.. ...|+++|+||
T Consensus 63 ~~~~iwD~--qer~~-----------~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHRKN-----------LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCCSC-----------EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECC
T ss_pred CeEEEEEE--ccccc-----------eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeH
Confidence 37899999 32222 11225678899999999998654 3332 344443333 13589999999
Q ss_pred CCCCC
Q 026970 147 GDELE 151 (230)
Q Consensus 147 ~D~~~ 151 (230)
+|+.+
T Consensus 125 ~DL~~ 129 (301)
T 1u0l_A 125 MDLYD 129 (301)
T ss_dssp GGGCC
T ss_pred HHcCC
Confidence 99875
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.59 E-value=0.0012 Score=49.34 Aligned_cols=24 Identities=13% Similarity=-0.031 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~ 41 (230)
....++++|++|+|||||+..|++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345889999999999999999986
No 424
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.58 E-value=0.00095 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~ 41 (230)
...|+|+|.+|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
No 425
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.58 E-value=0.002 Score=50.43 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh
Q 026970 17 NGERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~ 40 (230)
..+..|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999986
No 426
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.57 E-value=0.0028 Score=47.61 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
..++|.|++|+||||+++.+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998643
No 427
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.54 E-value=0.0012 Score=47.89 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
++|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998853
No 428
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.51 E-value=0.0012 Score=60.19 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+-+++|+|++|+|||||++.|+|.
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999954
No 429
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.50 E-value=0.0018 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
.....|+|.|.+||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998854
No 430
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.50 E-value=0.0013 Score=49.80 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
....++|+|++|+|||||+..|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3468899999999999999999873
No 431
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.50 E-value=0.0019 Score=46.69 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...++|.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998754
No 432
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.50 E-value=0.0019 Score=49.93 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~ 41 (230)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999998863
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.49 E-value=0.0019 Score=48.90 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~ 41 (230)
....|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999863
No 434
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.49 E-value=0.0017 Score=46.27 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026970 21 TVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~ 41 (230)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 435
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.48 E-value=0.0015 Score=50.14 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
..|+|.|++|+||||++++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 436
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.47 E-value=0.0021 Score=47.93 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+..|+++|.+|+||||+.+.|.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998754
No 437
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.47 E-value=0.0012 Score=47.74 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=15.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 026970 19 ERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~ 40 (230)
+..|+|.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999986
No 438
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.47 E-value=0.0028 Score=48.03 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.....|+|.|.+|+||||+++.|...
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35578999999999999999998754
No 439
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.46 E-value=0.00016 Score=54.79 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 21 TVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~~~ 44 (230)
.++|+|++|+|||||+++|++...
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcccc
Confidence 457899999999999999988654
No 440
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.45 E-value=0.0016 Score=46.71 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999863
No 441
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.45 E-value=0.0017 Score=48.44 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026970 21 TVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~ 41 (230)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 442
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.45 E-value=0.00072 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~ 42 (230)
.|+|.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 443
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.43 E-value=0.0019 Score=47.15 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026970 21 TVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~ 41 (230)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 444
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.43 E-value=0.00048 Score=56.90 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 026970 21 TVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~ 40 (230)
.++|+|++|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999998884
No 445
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.42 E-value=0.0021 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 026970 19 ERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~ 40 (230)
+..|+|.|++|+||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999987
No 446
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.41 E-value=0.0012 Score=58.81 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
...++|+|++|+|||||++.+.|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4689999999999999999998754
No 447
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.40 E-value=0.002 Score=48.01 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~ 42 (230)
+|+|+|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999888643
No 448
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.40 E-value=0.002 Score=47.14 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026970 21 TVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~ 41 (230)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 449
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.39 E-value=0.0025 Score=47.32 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~ 40 (230)
...+|+|++|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 567889999999999999874
No 450
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.36 E-value=0.0023 Score=45.69 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
.+|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998853
No 451
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.35 E-value=0.0026 Score=48.29 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~ 41 (230)
.....|+|+|.+|+||||+.+.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999874
No 452
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.33 E-value=0.0021 Score=60.57 Aligned_cols=27 Identities=37% Similarity=0.417 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++-.++++|++|+|||||++.|+|...
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999998753
No 453
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.32 E-value=0.0024 Score=48.10 Aligned_cols=20 Identities=30% Similarity=0.702 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 026970 21 TVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~ 40 (230)
.|+|.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 454
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.31 E-value=0.0016 Score=61.65 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
++-+|+++|++|+|||||++.|++--
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 34689999999999999999999864
No 455
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.30 E-value=0.0026 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
..++|.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998754
No 456
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.28 E-value=0.0013 Score=56.31 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
+...|+|+|.+|||||||++.|.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999998763
No 457
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.28 E-value=0.0059 Score=47.78 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=34.0
Q ss_pred HHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEeCCCCCC
Q 026970 95 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 151 (230)
Q Consensus 95 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (230)
+.+......+|++++|+|+.++.+.....+ .+.++ ..|.++|+||+|+.+
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l----~~~l~---~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPMI----EDILK---NKPRIMLLNKADKAD 64 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHH----HHHCS---SSCEEEEEECGGGSC
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHHH----HHHHC---CCCEEEEEECcccCC
Confidence 344445567799999999986665443222 22233 358999999999986
No 458
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.27 E-value=0.0021 Score=50.17 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~ 41 (230)
....++|+|++|+|||||+..+++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 446899999999999999999875
No 459
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.27 E-value=0.0038 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
+.|+|.|+||+|||||...|..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 6789999999999999988864
No 460
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.26 E-value=0.0029 Score=46.60 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~ 41 (230)
....|+|.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998853
No 461
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.26 E-value=0.0028 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999853
No 462
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.23 E-value=0.0031 Score=47.48 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
....++|.|++|+|||++++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998754
No 463
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.23 E-value=0.0028 Score=59.93 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++..++++|++|+|||||++.|+|.-.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 346899999999999999999998753
No 464
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.22 E-value=0.0042 Score=48.94 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...++|.|++|+|||++++.|.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 357999999999999999998764
No 465
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.19 E-value=0.0025 Score=45.94 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...++|.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988654
No 466
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.18 E-value=0.004 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
++.|+|+|+||||||||...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 367899999999999999998643
No 467
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.17 E-value=0.0036 Score=46.20 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...|+|+|++|+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999755
No 468
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.16 E-value=0.0038 Score=49.49 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
.+.|+|+|+||+|||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 367899999999999999999744
No 469
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.15 E-value=0.0036 Score=50.31 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 026970 20 RTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~ 40 (230)
...+|+|++|+||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999974
No 470
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.14 E-value=0.0036 Score=49.25 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999874
No 471
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.13 E-value=0.0075 Score=49.90 Aligned_cols=26 Identities=35% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
..+..|+++|.+||||||+.+.|...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34578899999999999999998743
No 472
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.12 E-value=0.0019 Score=56.82 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 026970 19 ERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~ 40 (230)
.-.++|+|++|+|||||++.++
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 3578999999999999998764
No 473
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.09 E-value=0.0029 Score=52.56 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
+..++|+|++|+|||||+++|.+..
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 3578999999999999999987643
No 474
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.09 E-value=0.0038 Score=46.08 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026970 21 TVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~ 41 (230)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999854
No 475
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.08 E-value=0.0046 Score=48.68 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
....++|.|++|+|||++++.+...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999887644
No 476
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.06 E-value=0.0034 Score=50.88 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
...+|+|++|+||||++++|.+
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 3789999999999999999874
No 477
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.05 E-value=0.0041 Score=49.06 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+..|+|.|++|+|||+++++|.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 367999999999999999999854
No 478
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.05 E-value=0.0042 Score=43.34 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
..|++.|++|+|||++..+|...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999754
No 479
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.05 E-value=0.0042 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
...++|.|++|+|||++++++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 480
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.04 E-value=0.004 Score=58.78 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCcc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRRA 44 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~~ 44 (230)
++-+++++|++|+|||||++.|+|...
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 346899999999999999999998754
No 481
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.03 E-value=0.0044 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
..|+|+|++|+|||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988643
No 482
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.01 E-value=0.0046 Score=48.65 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+..++|.|++|+|||+|.+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356777899999999999999754
No 483
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.00 E-value=0.0031 Score=50.98 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
....+.|+|++|+|||||++.+++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998753
No 484
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.00 E-value=0.0043 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
+.|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999888643
No 485
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.99 E-value=0.0092 Score=48.18 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
..++|.|++|+||||+++.+...
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999988643
No 486
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.97 E-value=0.0069 Score=45.13 Aligned_cols=76 Identities=9% Similarity=0.048 Sum_probs=34.6
Q ss_pred EEEEEeCCCCCCCCCCcHHHHHHHHHHHHhhcCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccceEEEEEeC
Q 026970 70 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK---IFDYMIVVFTG 146 (230)
Q Consensus 70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ivv~tk 146 (230)
++....+||-. ..... ..++.....++.+.|++|||+|..++-..+.+..+..+...+... ...|++|+.||
T Consensus 97 k~~~~~~~~~~--~~GGQ---~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANK 171 (227)
T 3l82_B 97 KMFSRHNEGDD--QQGSR---YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCI 171 (227)
T ss_dssp -------------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEE
T ss_pred hcccccCCCcc--ccCcH---HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCC
Confidence 35566666521 11122 344455556777889999999996542222444444444444332 23478888898
Q ss_pred C-CCC
Q 026970 147 G-DEL 150 (230)
Q Consensus 147 ~-D~~ 150 (230)
. |..
T Consensus 172 qqDlp 176 (227)
T 3l82_B 172 SQGDV 176 (227)
T ss_dssp SSTTS
T ss_pred CcCcc
Confidence 5 553
No 487
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.95 E-value=0.0024 Score=50.27 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=17.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 026970 19 ERTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~ 41 (230)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 488
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.92 E-value=0.004 Score=46.22 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 026970 20 RTVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~ 41 (230)
..+++.|++|+||||++.+|+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999888764
No 489
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.92 E-value=0.0034 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 026970 21 TVVLVGRTGNGKSATGNSILG 41 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~ 41 (230)
..+|+|++|+|||||+.+|..
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 778999999999999999873
No 490
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.91 E-value=0.0036 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 026970 18 GERTVVLVGRTGNGKSATGNSI 39 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l 39 (230)
..-.++|+|++|+|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 3468999999999999999994
No 491
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.83 E-value=0.0058 Score=49.26 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 17 NGERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
+....|+|+|++|+||||+.+.|.+.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 34468999999999999999887653
No 492
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.80 E-value=0.0045 Score=53.10 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
....++|+|++|+|||||+++|.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999765
No 493
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.78 E-value=0.0044 Score=56.95 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCc
Q 026970 19 ERTVVLVGRTGNGKSATGNSILGRR 43 (230)
Q Consensus 19 ~~~i~liG~~g~GKStlin~l~~~~ 43 (230)
...++|+|++|+|||||++.+ |..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 468999999999999999998 543
No 494
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.75 E-value=0.012 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
..++|+|++|+|||++++.+...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
No 495
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.73 E-value=0.0069 Score=45.87 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=19.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 026970 18 GERTVVLVGRTGNGKSATGNSIL 40 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~ 40 (230)
..-.++++|++|+|||||+..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999976664
No 496
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.73 E-value=0.0072 Score=49.04 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHH
Q 026970 17 NGERTVVLVGRTGNGKSATGNSI 39 (230)
Q Consensus 17 ~~~~~i~liG~~g~GKStlin~l 39 (230)
....+|+|+|.+|+|||||++.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 34589999999999999999876
No 497
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.71 E-value=0.0049 Score=49.42 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~ 42 (230)
.++|.|++|+||||+++.+++.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998765
No 498
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.70 E-value=0.0059 Score=50.04 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 026970 18 GERTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 18 ~~~~i~liG~~g~GKStlin~l~~~ 42 (230)
....++++|++|+||||+++.|+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3468899999999999999998754
No 499
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.68 E-value=0.0041 Score=43.32 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 026970 20 RTVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 20 ~~i~liG~~g~GKStlin~l~~~ 42 (230)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 56899999999999999988654
No 500
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.68 E-value=0.0072 Score=44.67 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 026970 21 TVVLVGRTGNGKSATGNSILGR 42 (230)
Q Consensus 21 ~i~liG~~g~GKStlin~l~~~ 42 (230)
.++|.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998753
Done!